{"aaby m": {"display": "Aaby M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746290", "pmid": "35210415", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Circulating Microbiome in Myeloid Malignancy"}]}, "aagaard k": {"display": "Aagaard K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB29078", "pmid": "37874156", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA296814", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA322188", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}]}, "aagaard km": {"display": "Aagaard KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA400259", "pmid": "33328537", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human Milk Microbiome Metagenome"}]}, "aalvink s": {"display": "Aalvink S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}]}, "aarestrup fm": {"display": "Aarestrup FM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12466", "pmid": "26161690", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Meta-genomic analysis of toilet waste from long distance flights"}]}, "abagnale m": {"display": "Abagnale M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "abana co": {"display": "Abana CO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "abarchi m": {"display": "Abarchi M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "abasolo n": {"display": "Abasolo N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA949443", "pmid": "37175775", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Targeted Locus (Loci)"}]}, "abbas a": {"display": "Abbas A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "abbas m": {"display": "Abbas M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44214", "pmid": "34983654", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in the gut microbiome in colon cancer surgery patients: a pilot observational stu…"}]}, "abdalbaqi m": {"display": "Abdalbaqi M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130109", "pmid": "39081889", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome study"}]}, "abdelghany m": {"display": "Abdelghany M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "abdou a": {"display": "Abdou A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "abdul azeez i": {"display": "Abdul Azeez I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39143045", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}, {"acc": "PRJNA1081952", "pmid": "39367018", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "abdullah ma": {"display": "Abdullah MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445932", "pmid": "29297933", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA445932", "pmid": "30121305", "pos": "last", "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}]}, "abdulle a": {"display": "Abdulle A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130109", "pmid": "39081889", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome study"}]}, "abecasis g": {"display": "Abecasis G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "abegglen lm": {"display": "Abegglen LM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "abel h": {"display": "Abel H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA259274", "pmid": "25568281", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Wake Forest Vervet Microbiome Project"}]}, "abengozar r": {"display": "Abengozar R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}]}, "abeysinghe s": {"display": "Abeysinghe S", "group": false, "n_studies": 40, "studies": [{"acc": "PRJEB1220", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB22207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJEB32135", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9576", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA188481", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA221723", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA305507", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA319574", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA322188", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA328899", "pmid": "38172624", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA398089", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA436562", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA485056", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA489090", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA504891", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA510445", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA542703", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA557731", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA633576", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA715601", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA853174", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "ablaeva j": {"display": "Ablaeva J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "aboshanab km": {"display": "Aboshanab KM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA771993", "pmid": "34827320", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Antimicrobial Discovery from Alcaligenes faecalis A Metagenomics-Nanopore sequencing Appr…"}, {"acc": "PRJNA785410", "pmid": "35052889", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Antimicrobial Discovery from Paenibacillus ehimensis A Metagenomics-Nanopore sequencing A…"}]}, "abou hachem m": {"display": "Abou Hachem M", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB6456", "pmid": "42203770", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB97976", "pmid": "42203770", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome maturation during weaning"}, {"acc": "PRJEB97980", "pmid": "42203770", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential impact of doxycycline treatment on antimicrobial resistance genes in the enteri…"}, {"acc": "PRJEB98012", "pmid": "42203770", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Creeping Fat"}, {"acc": "PRJEB98069", "pmid": "42203770", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Distinct Microbial and Resistome Signatures Differentiate Healthy and Inflamed Ileal Pouc…"}]}, "abraham al": {"display": "Abraham AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6314", "pmid": "25496341", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Construction of a dairy microbial genome catalog opens new perspectives for the metagenom…"}]}, "abraham t": {"display": "Abraham T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "abramova a": {"display": "Abramova A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1262354", "pmid": "41603547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMBARK - Establishing a Monitoring Baseline for Antimicrobial Resistance in Key environme…"}]}, "abrantes ma": {"display": "Abrantes MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA630999", "pmid": "33665175", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}]}, "abuoun m": {"display": "AbuOun M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "34609275", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}, {"acc": "PRJNA1031997", "pmid": "38659981", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "aby es": {"display": "Aby ES", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468588", "pmid": "42490468", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome dynamics in a primary sclerosing cholangitis patient treated with vancomyc…"}]}, "accetto t": {"display": "Accetto T", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA339914", "pmid": "36170451", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA343144", "pmid": "36170451", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome Metagenomic assembly"}, {"acc": "PRJNA400259", "pmid": "36170451", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human Milk Microbiome Metagenome"}, {"acc": "PRJNA524170", "pmid": "36170451", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Resistant microbiome underlies antibiotic therapy in pouchitis"}]}, "accordini s": {"display": "Accordini S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB121228", "pmid": "38793608", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}, {"acc": "PRJEB121228", "pmid": "41683794", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}]}, "accorsi ek": {"display": "Accorsi EK", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA398089", "pmid": "35614211", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA610982", "pmid": "33308267", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Determinants of S. aureus carriage in the developing infant nasal microbiome"}]}, "acerbi e": {"display": "Acerbi E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "acevedo flores m": {"display": "Acevedo Flores M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA938144", "pmid": "37754563", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HOLA gut microbiome"}]}, "acford-palmer h": {"display": "Acford-Palmer H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22207", "pmid": "31844297", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}]}, "achari a": {"display": "Achari A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188190", "pmid": "37113001", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two…"}]}, "acharya m": {"display": "Acharya M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29668933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "acharya s": {"display": "Acharya S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32631", "pmid": "40328944", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA400628", "pmid": "40328944", "pos": null, "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "Escherichia coli Genome sequencing and assembly"}]}, "acherman yiz": {"display": "Acherman YIZ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "achudhan ab": {"display": "Achudhan AB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA941822", "pmid": "37006617", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Mining nitrile hydrolysing enzymes from coal metagenome"}, {"acc": "PRJNA941822", "pmid": "37043060", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Mining nitrile hydrolysing enzymes from coal metagenome"}]}, "ackerman cm": {"display": "Ackerman CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA623215", "pmid": "32349121", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing to evaluate massively multiplexed detection with Cas13"}]}, "ackermann g": {"display": "Ackermann G", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB29078", "pmid": "37874156", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}, {"acc": "PRJNA296814", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA322188", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}]}, "ackermans mt": {"display": "Ackermans MT", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "acra sa": {"display": "Acra SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA986525", "pmid": "38441000", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "2'-fucoysllactose treatment of C57BL/6 adult mice fecal metagenomics"}]}, "acuna-gonzales a": {"display": "Acuna-Gonzales A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1230889", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}]}, "acuna-gonzalez a": {"display": "Acuna-Gonzalez A", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1191223", "pmid": "40813371", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of early life antibiotic and probiotic treatment on gut microbiome and resistome o…"}, {"acc": "PRJNA1230889", "pmid": "42020426", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}, {"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "adamow m": {"display": "Adamow M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445968", "pmid": "30282828", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}]}, "adams lb": {"display": "Adams LB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "addetia a": {"display": "Addetia A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29564400", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "33827948", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "addis mf": {"display": "Addis MF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB19090", "pmid": "27671352", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}]}, "adegbite br": {"display": "Adegbite BR", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46788", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB86954", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Integrating Metagenomics for Helminth Detection"}, {"acc": "PRJNA48479", "pmid": "41358671", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "adegnika aa": {"display": "Adegnika AA", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46788", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB86954", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Integrating Metagenomics for Helminth Detection"}, {"acc": "PRJNA48479", "pmid": "41358671", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "adeniji ja": {"display": "Adeniji JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27927929", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "adetunji as": {"display": "Adetunji AS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273078", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Noma oral microbiome raw sequence reads"}]}, "adhiambo j": {"display": "Adhiambo J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1045584", "pmid": "39185682", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of SARS-CoV-2 in stool sample from women living with HIV and HIV-negative women an…"}]}, "adiouch s": {"display": "Adiouch S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "adler a": {"display": "Adler A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28379561", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29564400", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "adler al": {"display": "Adler AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "27795347", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30576430", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "adoum a": {"display": "Adoum A", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA400115", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}, {"acc": "PRJNA806984", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}, {"acc": "PRJNA994433", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Variability of Bifidobacterium Species in the Infant Gut is Independent of M…"}]}, "adriouch s": {"display": "Adriouch S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}]}, "aepfelbacher m": {"display": "Aepfelbacher M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1775", "pmid": "23571589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diagnostic Metagenomics: A Culture-Independent Approach to the Investigation of Bacterial…"}]}, "aerts jgjv": {"display": "Aerts JGJV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "affourtit j": {"display": "Affourtit J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA43253", "pmid": "20363958", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human fecal microbiome"}]}, "affourtit jp": {"display": "Affourtit JP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA32089", "pmid": "19043404", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}]}, "afjehi-sadat l": {"display": "Afjehi-Sadat L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85785", "pmid": "41437131", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Seawater Metagenomes from a Wastewater Exposure Experiment"}]}, "afonso bc": {"display": "Afonso BC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA847605", "pmid": "36565815", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosa…"}]}, "afshinnekoo e": {"display": "Afshinnekoo E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "agak gw": {"display": "Agak GW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA856701", "pmid": "36165604", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin microbiome of forehead in children with and without acne"}]}, "agamennone v": {"display": "Agamennone V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473421", "pmid": "31086216", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Folsomia candida gut metagenome sequence reads"}]}, "agardh d": {"display": "Agardh D", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA268964", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA392180", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA485056", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA497734", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "agee w": {"display": "Agee W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1067813", "pmid": "39731916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C. difficile-associated mouse and human fecal metagenomes"}]}, "agga ge": {"display": "Agga GE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1168161", "pmid": "39858820", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Effect of anaerobic digestion of simple sugar amended dairy manure on microbial profiling"}]}, "aggarwal m": {"display": "Aggarwal M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "aghaeepour n": {"display": "Aghaeepour N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "agius je": {"display": "Agius JE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "agnese v": {"display": "Agnese V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1294276", "pmid": "41019762", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human pegivirus isolate Pegi-ITA-25, complete genome."}]}, "agnez-lima lf": {"display": "Agnez-Lima LF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA60545", "pmid": "24706600", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes isolated from NE Brazil"}]}, "agoti cn": {"display": "Agoti CN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156362", "pmid": "39319086", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Genomic epidemiology of human adenoviruses"}]}, "agrawal m": {"display": "Agrawal M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39474439", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "agronin m": {"display": "Agronin M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912638", "pmid": "37213047", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MICROBIOME IN AGING GUT AND BRAIN (MiaGB) STUDY"}]}, "aguado-garcia y": {"display": "Aguado-García Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA592261", "pmid": "32788688", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}]}, "aguilar ramos ma": {"display": "Aguilar Ramos MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA955235", "pmid": "42262087", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}]}, "aguilar-aguilar e": {"display": "Aguilar-Aguilar E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "agustinho dp": {"display": "Agustinho DP", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1195144", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1224818", "pmid": "38361816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with n…"}]}, "ahern gj": {"display": "Ahern GJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}]}, "ahlstrom t": {"display": "Ahlström T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "ahmad a": {"display": "Ahmad A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130109", "pmid": "39081889", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome study"}]}, "ahmad hm": {"display": "Ahmad HM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB23207", "pmid": "29468143", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic characterization of the human intestinal microbiota in faecal samples from ST…"}]}, "ahmad s": {"display": "Ahmad S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "ahmad sm": {"display": "Ahmad SM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB6456", "pmid": "30258040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA436562", "pmid": "30258040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}]}, "ahmadi s": {"display": "Ahmadi S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA301903", "pmid": "27572443", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}]}, "ahmadov g": {"display": "Ahmadov G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445932", "pmid": "29297933", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA445932", "pmid": "30121305", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}]}, "ahmed s": {"display": "Ahmed S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "ahmed ss": {"display": "Ahmed SS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "ahmed t": {"display": "Ahmed T", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}, {"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}]}, "ahn-jarvis j": {"display": "Ahn-Jarvis J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA722408", "pmid": "36076058", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}, {"acc": "PRJNA722408", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}]}, "ahouidi ad": {"display": "Ahouidi AD", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1079728", "pmid": "38655084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Next-generation sequencing survey of acute febrile illness in Senegal (2020-2022)"}, {"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "ahsan k": {"display": "Ahsan K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45356", "pmid": "42014682", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}]}, "ahsanuddin s": {"display": "Ahsanuddin S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "ahyong v": {"display": "Ahyong V", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1019500", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}, {"acc": "PRJNA843963", "pmid": "32351922", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "ai j": {"display": "Ai J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB38192", "pmid": "37674580", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Utility of clinical metagenomics in diagnosing malignancies in a cohort of patients with…"}]}, "ai p": {"display": "Ai P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1127293", "pmid": "39065200", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "fecal microbial composition in Parkinson's disease"}]}, "aichatou b": {"display": "Aichatou B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "ainsworth s": {"display": "Ainsworth S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273078", "pmid": null, "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Noma oral microbiome raw sequence reads"}]}, "airende m": {"display": "Airende M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "aiyepada j": {"display": "Aiyepada J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "ajami n": {"display": "Ajami N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "ajami nj": {"display": "Ajami NJ", "group": false, "n_studies": 7, "studies": [{"acc": "PRJNA268964", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA392180", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA485056", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA497734", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}, {"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "ajibola o": {"display": "Ajibola O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "ajimoto m": {"display": "Ajimoto M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB15258", "pmid": "38265980", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of 7,000 to 5,500 years old coprolites excavated from the Torihama s…"}]}, "ajjampur ss": {"display": "Ajjampur SS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "ajogbasile f": {"display": "Ajogbasile F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "akanni gb": {"display": "Akanni GB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73590", "pmid": "38003822", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}]}, "akdag g": {"display": "Akdag G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB72531", "pmid": "38424099", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prebiotic intervention for muscle function and cognition"}]}, "akgun g": {"display": "Akgun G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "akhilomen p": {"display": "Akhilomen P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "akimkin vg": {"display": "Akimkin VG", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA755866", "pmid": "34696436", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viruses in Bats"}, {"acc": "PRJNA755887", "pmid": "34696436", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Viruses in Bats"}]}, "akinbi h": {"display": "Akinbi H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1364313", "pmid": "35794664", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Antibiotic impact on preterm infant microbiome maturation"}]}, "akinsuyi o": {"display": "Akinsuyi O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1095378", "pmid": "39373498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic resistance"}]}, "akiyama y": {"display": "Akiyama Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11203", "pmid": "34069916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Taxonomic and gene category analysis of subgingival plaques with and without periodontal…"}]}, "akkelle b": {"display": "Akkelle B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "akolkar b": {"display": "Akolkar B", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA268964", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA392180", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA485056", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA497734", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "akpede g": {"display": "Akpede G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "akrami r": {"display": "Akrami R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB127029", "pmid": "26552345", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abun…"}]}, "akre s": {"display": "Akre S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB6456", "pmid": "30258040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA436562", "pmid": "30258040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}]}, "aksenov aa": {"display": "Aksenov AA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA772730", "pmid": "35071138", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The FOUNDATION Study: Hospital Formulation Of B. infantis EVC001 Utilized In The NICU To…"}]}, "al-aama jy": {"display": "Al-Aama JY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}]}, "al-ghalith ga": {"display": "Al-Ghalith GA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA903921", "pmid": "40469735", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Mycobiome Maturation and Its Determinants during Infancy: A Comparison of Shotgun Met…"}]}, "al-haroni m": {"display": "Al-Haroni M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1018099", "pmid": "38938117", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Cell-Lysis Treatment Prior to Saliva Metagenomic DNA Extraction on the Oral Mic…"}]}, "al-nakib w": {"display": "Al-Nakib W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA587350", "pmid": "32000795", "pos": "last", "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "viral metagenomic sequencing in Kuwait"}]}, "alam m": {"display": "Alam M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945262", "pmid": "37067419", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Gut Microbiome in a mother child paired design"}]}, "alasmari f": {"display": "Alasmari F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38089", "pmid": "32091380", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics study of an Imported Multidrug-Resistant Mycobacterium leprae, Saudi Arabia,…"}]}, "alassaf a": {"display": "Alassaf A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445932", "pmid": "29297933", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA445932", "pmid": "30121305", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}]}, "alawi m": {"display": "Alawi M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB15376", "pmid": "29067007", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome, metatranscriptome and exo-proteome analyses identify molecular keys and main…"}, {"acc": "PRJEB40662", "pmid": "34675897", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Deep (Meta)genomics and (Meta)transcriptome Analyses of Fungal and Bacteria Consortia Fro…"}, {"acc": "PRJNA240141", "pmid": "25208077", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "alba c": {"display": "Alba C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "alba j": {"display": "Alba J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819232", "pmid": "35618952", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Integrase Inhibitors on gut and oral microbiome"}]}, "albathi f": {"display": "Albathi F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1201756", "pmid": "37940330", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome Metagenome"}]}, "alberdi a": {"display": "Alberdi A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB76898", "pmid": "38777633", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "EHI Data Release 1"}, {"acc": "PRJEB77033", "pmid": "38777633", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "EHI data release 2"}]}, "albert bb": {"display": "Albert BB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA637785", "pmid": "33346848", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA637785", "pmid": "33985595", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}]}, "albert fw": {"display": "Albert FW", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1019702", "pmid": "39043677", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "39265573", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1198101", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic re-sequencing of human milk"}]}, "albert j": {"display": "Albert J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64634", "pmid": "32067542", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Fatal encephalitis associated with coronavirus OC43 in an immunocompromised child"}]}, "alberts sc": {"display": "Alberts SC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB29065", "pmid": "37158607", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Daily sampling reveals personalized diet-microbiome associations"}, {"acc": "PRJNA290380", "pmid": "37158607", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "albertsen m": {"display": "Albertsen M", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB48021", "pmid": "35789207", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of anaerobic digester at Fredericia WWTP with short and long read s…"}, {"acc": "PRJEB48692", "pmid": "35789207", "pos": "last", "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Sequenced reads for ZymoBIOMICS HMW DNA Standard, including reads from Illumina, Nanopore…"}, {"acc": "PRJEB50688", "pmid": "35972375", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sequencing read data for Danish soil samples"}, {"acc": "PRJEB52550", "pmid": "36697964", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of samples suspected of featuring cable bacteria genomic DNA with s…"}, {"acc": "PRJEB58634", "pmid": "40707831", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencin…"}]}, "albiges l": {"display": "Albiges L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "albright j": {"display": "Albright J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "albright vc": {"display": "Albright VC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1107349", "pmid": "38980166", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Polysaccharide degradation by microbial communities"}]}, "alcaide m": {"display": "Alcaide M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA158313", "pmid": "23251564", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Iberian lynx fecal Metagenome"}]}, "alcaniz aj": {"display": "Alcañiz AJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB74322", "pmid": "40603287", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJNA1227883", "pmid": "40603287", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}]}, "alcantara c": {"display": "Alcántara C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1227883", "pmid": "31053102", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}]}, "alcolea s": {"display": "Alcolea S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB71847", "pmid": "38785596", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Gut and respiratory tract microbiota in children younger than 12 months hospitalised for…"}]}, "alcon-giner c": {"display": "Alcon-Giner C", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB14935", "pmid": "29096601", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Term and preterm shotgun samples"}, {"acc": "PRJEB22207", "pmid": "31844297", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJNA1191223", "pmid": "40813371", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of early life antibiotic and probiotic treatment on gut microbiome and resistome o…"}, {"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA63661", "pmid": "32436839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "alcorta j": {"display": "Alcorta J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA930765", "pmid": "36869137", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia felis reads and MAG recovered from a child who lived in southern Africa 2000 y…"}]}, "aldeia c": {"display": "Aldeia C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA931814", "pmid": "37720151", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistome and microbiome analysis of stool samples from healthy people using shotgun meta…"}, {"acc": "PRJNA931814", "pmid": "39198442", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistome and microbiome analysis of stool samples from healthy people using shotgun meta…"}]}, "aldenderfer m": {"display": "Aldenderfer M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445215", "pmid": "29959351", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "aldrovandi gm": {"display": "Aldrovandi GM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA836336", "pmid": "36179550", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenome of MSM prior to and following HIV seroconversion"}]}, "alessandri g": {"display": "Alessandri G", "group": false, "n_studies": 210, "studies": [{"acc": "PRJDB4176", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB10878", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB1220", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB1220", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36316342", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB14935", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Term and preterm shotgun samples"}, {"acc": "PRJEB15257", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB15371", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB17784", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The fecal microbiota in L-DOPA naive PD patients"}, {"acc": "PRJEB1786", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB18755", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Connections between the gut microbiome and gestational diabetes mellitus"}, {"acc": "PRJEB21528", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB23662", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A novel affordable reagent for room temperature storage and transport of fecal samples fo…"}, {"acc": "PRJEB24006", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24557", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Alterations of the intestinal microbiome in patients with retinal artery occlusion"}, {"acc": "PRJEB24771", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36316342", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB25514", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A cross-sectional study of compositional and functional profiles of gut microbiota in Sar…"}, {"acc": "PRJEB26795", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB27005", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27005", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27928", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB28338", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Influence of travel on the gut microbiome of cricketers"}, {"acc": "PRJEB28687", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "U.S. immigration westernizes the human gut microbiome"}, {"acc": "PRJEB29052", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29052", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29127", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB29127", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB30834", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30834", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30924", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Comparative analysis of amplicon and metagenomic sequencing methods reveals key features…"}, {"acc": "PRJEB32135", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36316342", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32794", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Distinct microbiome composition and metabolome exists across subgroups of elite Irish ath…"}, {"acc": "PRJEB33013", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB33098", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB33098", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB35615", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Associations between the intestinal microbiome and the complement system in age-related m…"}, {"acc": "PRJEB36820", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB38528", "pmid": "38441032", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB39610", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39610", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39813", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenomic study of the oral (saliva) and Gut (stool) microbiome in subjects with Croh…"}, {"acc": "PRJEB41102", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB41463", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB42363", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB44737", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB46788", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB6070", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6070", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6092", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "metagenome fecal microbiota, Ilumina seq reads of 12 individuals at 2 timepoints"}, {"acc": "PRJEB6456", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36316342", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB7774", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB7774", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB8347", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJEB9150", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbial succession follows acute secretory diarrhea in humans"}, {"acc": "PRJEB9576", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA1046438", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA188481", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA215106", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA221723", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA231909", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA268964", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA275349", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA278393", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA287207", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36316342", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA289586", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA290380", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36316342", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA299502", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA301903", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA305507", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA307231", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA317435", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "ImMicroDyn"}, {"acc": "PRJNA319574", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA320015", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Technical validation of ethanol fixation on stool canine and infant metagenomes"}, {"acc": "PRJNA321218", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA321218", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA322188", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36316342", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA324129", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human fecal microbiome before and after consumption of AH1206 - Raw sequence reads"}, {"acc": "PRJNA324672", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA327106", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA331138", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of Italian metagenome"}, {"acc": "PRJNA336518", "pmid": "36123315", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA339012", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics analysis of donor and recepient samples from fecal transplant for Recurrent…"}, {"acc": "PRJNA339914", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36316342", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA340216", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota and metagenomic diversity of omnivore, vegetarian and vegan healthy subjec…"}, {"acc": "PRJNA345144", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36316342", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36316342", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA360177", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA360177", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA362284", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA371647", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Raw sequence reads"}, {"acc": "PRJNA373879", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Healthy human fecal metagenomes variably reactivate Irinotecan active metabolite"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379741", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "MECFS metagenomics"}, {"acc": "PRJNA380118", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA382011", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics-Guided Pathogen Discovery in Travelers' Diarrhea"}, {"acc": "PRJNA384716", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA386422", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA386422", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA389927", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Viral and Bacterial Communities of Colorectal Cancer"}, {"acc": "PRJNA390646", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA392180", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA396794", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA397219", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA400072", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA400072", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA401385", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA401385", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA412411", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA413160", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenome data from infant stools samples raw sequence reads"}, {"acc": "PRJNA413162", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenome data from infant (PD and ProD) stools samples raw sequence reads"}, {"acc": "PRJNA414479", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Total lipopolysaccharide from the human gut microbiome silences toll-like receptor signal…"}, {"acc": "PRJNA417343", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y5 Cohort)"}, {"acc": "PRJNA418941", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota functionality of healthy controls and individuals with kidney stones"}, {"acc": "PRJNA421881", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA422434", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422569", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "36316342", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA428202", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "healthy human gut metagenomics"}, {"acc": "PRJNA431482", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA431482", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA433459", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "gut metagenome Metagenome"}, {"acc": "PRJNA436562", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA438847", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA438847", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA445968", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA449784", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA449784", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA472785", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Gut Microbiome Metagenomic Sequencing"}, {"acc": "PRJNA473126", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36316342", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36316342", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA482729", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of native and acetylated high amylose maize starch on fecal pH, short chain fatty…"}, {"acc": "PRJNA485056", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA486782", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486795", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Modification of gut microbiota-bile acid-intestinal FXR signaling leads to the clinical b…"}, {"acc": "PRJNA487305", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Effects of non-nutritive sweeteners on the composition of the human gut microbiome"}, {"acc": "PRJNA489090", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489693", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA492716", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA497734", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA499081", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}, {"acc": "PRJNA503909", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA503909", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA509512", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiota changes are associated with acquisition of antibiotic resistant genes among in…"}, {"acc": "PRJNA518912", "pmid": "36123315", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA521587", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521587", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521878", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36316342", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA527208", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA527208", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA529124", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529230", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "n of 1 study: Fecal Microbiota Transplantation in Multiple Sclerosis"}, {"acc": "PRJNA531203", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531203", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA532310", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut metagenome"}, {"acc": "PRJNA532538", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome of the gut microbiota in multiple system atrophy patients"}, {"acc": "PRJNA542703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36316342", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA544527", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA547591", "pmid": "36177457", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547591", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547717", "pmid": "36123315", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "human oral metagenome Raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36316342", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA553191", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA553191", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA555020", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA557731", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36316342", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA562600", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Multi-omic analysis of Clostridioides difficile infection and response to therapy in pedi…"}, {"acc": "PRJNA562766", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA588513", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA588513", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA589622", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Underfeeding and oral vancomycin perturb the human gut microbiome and impair nutrient abs…"}, {"acc": "PRJNA597839", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota, visceral fat and sleeve gastrectomy"}, {"acc": "PRJNA613834", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Functional Microbial Responses to Alcohol Abstinence in Patients with Alcohol Use Disorder"}, {"acc": "PRJNA615162", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615842", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}, {"acc": "PRJNA624223", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624223", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624763", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA624763", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA626004", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics Fecal Microbiome Dysbiosis in Parkinsons Disease"}, {"acc": "PRJNA628604", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}, {"acc": "PRJNA629392", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}, {"acc": "PRJNA630999", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA633576", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA634145", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA63661", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA637175", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}, {"acc": "PRJNA637878", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA637878", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA644725", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA644725", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA648487", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA648487", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA649316", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Hi-C and metagenomic sequencing of neutropenic patient microbiomes"}, {"acc": "PRJNA658422", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "gut microbiome shifts associated with Henoch-Schonlein purpura"}, {"acc": "PRJNA663646", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "External validation cohorts for CRC-SNP analysis"}, {"acc": "PRJNA664544", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut microbes Metagenome"}, {"acc": "PRJNA665061", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665854", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS of feces and saliva of pancreatic cancer patients"}, {"acc": "PRJNA678426", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes."}, {"acc": "PRJNA678454", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of stool samples from two South African cohorts"}, {"acc": "PRJNA679346", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA679346", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA685797", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The Influence of the gut microbiome on BCG-induced trained immunity"}, {"acc": "PRJNA686265", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-mediated metabolism effects on immunity in rural and urban African populat…"}, {"acc": "PRJNA687536", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA687536", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA688164", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688164", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688274", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA688881", "pmid": "36177457", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Metagenome-wide association study of gut microbiome revealed potential etiology of Pediat…"}, {"acc": "PRJNA692830", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole genome metagenomic analysis of the gut microbiome in HIV-1 infected individuals on…"}, {"acc": "PRJNA695570", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA698773", "pmid": "33973321", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA698773", "pmid": "34715437", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA698986", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA705895", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA714678", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA714678", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA715615", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural infant gut microbiota"}, {"acc": "PRJNA730640", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}, {"acc": "PRJNA742740", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiota of Kidney Stone patients and live-in partners"}, {"acc": "PRJNA750475", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Longitudinal Analysis of Gut Microbiome among healthy women"}, {"acc": "PRJNA752006", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing to Examine the Gut Microbiome in Konzo"}, {"acc": "PRJNA762543", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA763503", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Character of microbial engraftment following the fecal microbiota transplantation in pati…"}, {"acc": "PRJNA772518", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA772518", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA782810", "pmid": "36316342", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Exploring the species-level infant gut bacterial biodiversity through a meta-analysis and…"}, {"acc": "PRJNA845806", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Trial of Diet in Gestational Diabetes Mellitus: Metabolic Consequences to Mother and Offs…"}, {"acc": "PRJNA975734", "pmid": "37728335", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Disentangling the interactions between nasopharyngeal and gut microbiome and their involv…"}]}, "alexander dc": {"display": "Alexander DC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "42311381", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "alexander je": {"display": "Alexander JE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}]}, "alexander n": {"display": "Alexander N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "alexander t": {"display": "Alexander T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA648487", "pmid": "33732655", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}]}, "alexandersen s": {"display": "Alexandersen S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36405", "pmid": "34603219", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Study of the bacterial resistome in people and animals from Australia"}]}, "alexiou a": {"display": "Alexiou A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "alfonsetti d": {"display": "Alfonsetti D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32631", "pmid": "40328944", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA400628", "pmid": "40328944", "pos": null, "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "Escherichia coli Genome sequencing and assembly"}]}, "alhalouli t": {"display": "Alhalouli T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38089", "pmid": "32091380", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics study of an Imported Multidrug-Resistant Mycobacterium leprae, Saudi Arabia,…"}]}, "alhquist d": {"display": "Alhquist D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA312222", "pmid": "27303377", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genome reconstructions from human gut metagenomes"}]}, "ali a": {"display": "Ali A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "ali r": {"display": "Ali R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130109", "pmid": "39081889", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome study"}]}, "ali t": {"display": "Ali T", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB14383", "pmid": "34551287", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Oral microbiome samples from the Philippines"}, {"acc": "PRJNA275349", "pmid": "34551287", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA48479", "pmid": "34551287", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "alinde bl": {"display": "Alinde BL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1143669", "pmid": "39707483", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of neonates exposed to HIV"}]}, "alla l": {"display": "Alla L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "allaband c": {"display": "Allaband C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA597371", "pmid": "34193290", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal Selective Pressure and Coevolution Project Part 4 human placebo Metagenome"}]}, "allard sm": {"display": "Allard SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1086674", "pmid": "39138352", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Impact of Oral Feedings on the Preterm Infant Microbiome and Metabolome"}]}, "allen ccr": {"display": "Allen CCR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB30955", "pmid": "30625669", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic Characterization of Viral and Bacterial Communities in Groundwater Associated…"}]}, "allen ee": {"display": "Allen EE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA81851", "pmid": "22773627", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Hypersaline Lake Metagenome"}, {"acc": "PRJNA81851", "pmid": "23853523", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Hypersaline Lake Metagenome"}, {"acc": "PRJNA819194", "pmid": "35606844", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "KRuMBS: Kyphosid Ruminant Microbial Biodigestor of Seaweeds"}]}, "allen je": {"display": "Allen JE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352376", "pmid": "28072390", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}]}, "allen jm": {"display": "Allen JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657304", "pmid": "33542301", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun Sequencing of Dog Coprolites"}]}, "allen kj": {"display": "Allen KJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "allen sj": {"display": "Allen SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB82926", "pmid": "40431157", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic Supplementation Impacts Gut Microbiota Development in Infants at Risk of Atopy:…"}]}, "allen sv": {"display": "Allen SV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821920", "pmid": "41782637", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mental Health Screening for Babies. What can we learn from infant and caregiver behaviors…"}]}, "allentoft me": {"display": "Allentoft ME", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}, {"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "allert m": {"display": "Allert M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1019702", "pmid": "39043677", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "39265573", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1198101", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic re-sequencing of human milk"}]}, "allison jp": {"display": "Allison JP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "allnutt tr": {"display": "Allnutt TR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}]}, "allsing n": {"display": "Allsing N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB57859", "pmid": "36612923", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Analysis of Microbial Contamination in the U.S. Portion of the Tijuana River…"}]}, "alm ej": {"display": "Alm EJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA396275", "pmid": "29988721", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Association between oral and gut microbiota in Periodontal Disease"}, {"acc": "PRJNA544527", "pmid": "31477907", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}]}, "alm j": {"display": "Alm J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB84944", "pmid": "40885737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of 56 mother-infant dyads from the ALADDIN birth cohort"}]}, "almas s": {"display": "Almas S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA986135", "pmid": "37469596", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "UTI microbiome"}, {"acc": "PRJNA995059", "pmid": "36825940", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Respiratory Microbiome"}]}, "almeida a": {"display": "Almeida A", "group": false, "n_studies": 43, "studies": [{"acc": "PRJEB24006", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB27928", "pmid": "36050292", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB27928", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB29052", "pmid": "39794474", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB32631", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "36050292", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB32731", "pmid": "38424077", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB36820", "pmid": "36050292", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB36820", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB6456", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9524", "pmid": "38424077", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Expanded Enteric Virome and Altered Bacterial Microbiome in Acquired Immunodeficiency Syn…"}, {"acc": "PRJNA272371", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA301903", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA301903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA385126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA387903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Intestinal Virome Changes Precede Autoimmunity in Type I Diabetes Susceptible Children"}, {"acc": "PRJNA390646", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA390646", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA396794", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA407341", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA436562", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA446038", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}, {"acc": "PRJNA46333", "pmid": "37054678", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA473126", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA491626", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut virome of Cameroonians living in close proximity with bats"}, {"acc": "PRJNA521878", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA521878", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA545408", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Longitudinal study of the human gut virome"}, {"acc": "PRJNA555020", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA562766", "pmid": "36050292", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA562766", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA657818", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA657818", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}]}, "almeida as": {"display": "Almeida AS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29052", "pmid": "39794474", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}]}, "almeida m": {"display": "Almeida M", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB4413", "pmid": "23985875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary intervention impact on gut microbial gene richness based on SOLiD next generation…"}, {"acc": "PRJEB50473", "pmid": "35532226", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "PacBio HiFi sequencing of a human fecal metagenome"}, {"acc": "PRJEB52431", "pmid": "36971547", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In Vitro Modelling of Oral Microbial Invasion in the Human Colon"}, {"acc": "PRJEB59994", "pmid": "37892187", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evaluation of an Adapted Semi-Automated DNA Extraction for Human Salivary Shotgun Metagen…"}, {"acc": "PRJEB6314", "pmid": "25496341", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Construction of a dairy microbial genome catalog opens new perspectives for the metagenom…"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "almutairi ts": {"display": "Almutairi TS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38089", "pmid": "32091380", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics study of an Imported Multidrug-Resistant Mycobacterium leprae, Saudi Arabia,…"}]}, "alonso l": {"display": "Alonso L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991269", "pmid": "38589361", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "alou mt": {"display": "Alou MT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "alousi am": {"display": "Alousi AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "alpalhao m": {"display": "Alpalhão M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "alper hs": {"display": "Alper HS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA497801", "pmid": "31701197", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "bovine fecal metagenome"}]}, "alsheikh-hussain a": {"display": "Alsheikh-Hussain A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1156595", "pmid": "39827146", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics: a new frontier for routine pathology testing of gastrointestinal pathogens"}, {"acc": "PRJNA1200893", "pmid": "41809988", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}]}, "alt kw": {"display": "Alt KW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}]}, "altamura f": {"display": "Altamura F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA925842", "pmid": "36750571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut bacteria glycan metabolism - Raw sequence reads"}]}, "altan e": {"display": "Altan E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA495079", "pmid": "31097029", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "New circovirus infecting phyton liver"}, {"acc": "PRJNA548968", "pmid": "31652508", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Fecal virome of wild and captive Cynomolgus macaques (Macaca fascicularis) in Thailand."}]}, "alter e": {"display": "Alter E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "altinbaev r": {"display": "Altinbaev R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1061168", "pmid": "38440790", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Excess fermentation and lactic acidosis as detrimental functions of the gut microbes in t…"}, {"acc": "PRJNA1366497", "pmid": "42553090", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Bifidobacterium- and Escherichia-dominated gut microbiome metabolic shifts in tuberculosi…"}]}, "altrichter s": {"display": "Altrichter S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "alvarez as": {"display": "Alvarez AS", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}, {"acc": "PRJEB43611", "pmid": "35140493", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in gut microbiota during balneotherapy"}]}, "alvarez jc": {"display": "Alvarez JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "alvarez r": {"display": "Alvarez R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA624185", "pmid": "33239396", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Deep metagenomics examines the oral microbiome during advanced dental caries in children,…"}]}, "alvarez-estape m": {"display": "Alvarez-Estape M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB32319", "pmid": "32004756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Reads sequenced from a parchment blood stain attributed to the french revolutionary Jean…"}]}, "alvarez-fraga l": {"display": "Alvarez-Fraga L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893826", "pmid": "38622998", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Culture-independent long read metagenomic diagnostics for genomic surveillance and infect…"}]}, "alvarez-ordonez a": {"display": "Alvarez-Ordóñez A", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA997800", "pmid": "38267717", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39407346", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "alverdy j": {"display": "Alverdy J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14474", "pmid": "28539477", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}]}, "alves costa silva c": {"display": "Alves Costa Silva C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "alves j": {"display": "Alves J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "alves jv": {"display": "Alves JV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "alves ma": {"display": "Alves MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "36195095", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "alves r": {"display": "Alves R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "alves rj": {"display": "Alves RJ", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJNA289586", "pmid": "30747106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}]}, "alymkulov s": {"display": "Alymkulov S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884026", "pmid": "36724220", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic investigation of lake Issyk-Kul, Kyrgyzstan"}]}, "amani n": {"display": "Amani N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73590", "pmid": "38235427", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}]}, "amani nb": {"display": "Amani NB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73590", "pmid": "37111504", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}]}, "amaretti a": {"display": "Amaretti A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "38047279", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "42039832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "42039832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "amaria rn": {"display": "Amaria RN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "amato c": {"display": "Amato C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1294276", "pmid": "41019762", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human pegivirus isolate Pegi-ITA-25, complete genome."}]}, "amatullah h": {"display": "Amatullah H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "ambalavanan n": {"display": "Ambalavanan N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA63661", "pmid": "25332767", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA63661", "pmid": "26110908", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "ambrose sh": {"display": "Ambrose SH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657304", "pmid": "33542301", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun Sequencing of Dog Coprolites"}]}, "amdal ha": {"display": "Åmdal HA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1009231", "pmid": "39019886", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Born in the twilight of antbiotics"}, {"acc": "PRJNA876384", "pmid": "36620054", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Microbial DNA extraction of high-host content and low biomass samples: optimized protocol…"}]}, "ame s": {"display": "Ame S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1211045", "pmid": "40833797", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Freshwater snail faeces raw sequence reads"}]}, "ameha n": {"display": "Ameha N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "33553097", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "amend l": {"display": "Amend L", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}, {"acc": "PRJNA1115039", "pmid": "39673707", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary selective effects manifest in the human gut microbiota from species composition t…"}, {"acc": "PRJNA947377", "pmid": "38366600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Establishment of a non-Westernized gut microbiota in men who have sex with men is associa…"}]}, "amin s": {"display": "Amin S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "amirkhani a": {"display": "Amirkhani A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}, {"acc": "PRJNA1369410", "pmid": "42242497", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics sequencing from patients with CD4 lymphopenia"}]}, "amirtharajah m": {"display": "Amirtharajah M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273078", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Noma oral microbiome raw sequence reads"}]}, "amor n": {"display": "Amor N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}]}, "amoretti l": {"display": "Amoretti L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}]}, "amoretti la": {"display": "Amoretti LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "amoroso l": {"display": "Amoroso L", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB63351", "pmid": "38104504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neuroblastoma is associated with alterations in gut microbiome composition subsequent to…"}, {"acc": "PRJEB6456", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "amoruso a": {"display": "Amoruso A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746509", "pmid": "34946200", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota in an infant with propionic acidemia before and after probiotic supplement…"}]}, "amos gca": {"display": "Amos GCA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1222153", "pmid": "41547860", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Waltham Catalogue for the Canine Gut Microbiome: A complete taxonomic and functional cata…"}]}, "amso d": {"display": "Amso D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "42311381", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "amuasi j": {"display": "Amuasi J", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "ananda s": {"display": "Ananda S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "41265504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "anang nas": {"display": "Anang NAS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "ananthakrishnan an": {"display": "Ananthakrishnan AN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685168", "pmid": "34297922", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics suggest diverse mechanisms for response to biologic therapies in IBD"}]}, "andama m": {"display": "Andama M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573108", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Sedimentary DNA from Mubwindi Swamp"}]}, "andermann tm": {"display": "Andermann TM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA787952", "pmid": "35239511", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}]}, "andersen gl": {"display": "Andersen GL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA278302", "pmid": "26787827", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Alaska oil reservoir Metagenome"}]}, "andersen kg": {"display": "Andersen KG", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}, {"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}, {"acc": "PRJNA679286", "pmid": "34320399", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Global genome analyses reveal a vast and dynamic anellovirus landscape within the human v…"}]}, "andersen lp": {"display": "Andersen LP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA592050", "pmid": "31738985", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Air genomes from surgical room Raw sequence reads"}]}, "andersen mhb": {"display": "Andersen MHB", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB6456", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB97976", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome maturation during weaning"}, {"acc": "PRJEB97980", "pmid": "42203770", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential impact of doxycycline treatment on antimicrobial resistance genes in the enteri…"}, {"acc": "PRJEB98012", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Creeping Fat"}, {"acc": "PRJEB98069", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Distinct Microbial and Resistome Signatures Differentiate Healthy and Inflamed Ileal Pouc…"}]}, "andersen sb": {"display": "Andersen SB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893826", "pmid": "38622998", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Culture-independent long read metagenomic diagnostics for genomic surveillance and infect…"}]}, "anderson j": {"display": "Anderson J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "anderson m": {"display": "Anderson M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1086504", "pmid": "38752784", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gardnerella diversity by metagenomic sequencing in the vaginal microbiome"}]}, "anderson mv": {"display": "Anderson MV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1369410", "pmid": "42242497", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics sequencing from patients with CD4 lymphopenia"}]}, "anderson rm": {"display": "Anderson RM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "anderson rr": {"display": "Anderson RR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA667736", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Milk Metagenome Anomaly Detection Project"}]}, "andersson af": {"display": "Andersson AF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA379120", "pmid": "30504906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}]}, "andersson s": {"display": "Andersson S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64567", "pmid": "33007265", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Maternal FMT in Cesarean-Born Infants - WGS sequencing of infants (1w to 1year) and mater…"}]}, "andino r": {"display": "Andino R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644725", "pmid": "32958861", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}]}, "andrade bgn": {"display": "Andrade BGN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA987743", "pmid": "38163076", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Ruminal and Fecal Microbiomes of Brazilian Nelore Cattle"}, {"acc": "PRJNA987743", "pmid": "39695297", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Ruminal and Fecal Microbiomes of Brazilian Nelore Cattle"}]}, "andrade k": {"display": "Andrade K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA81851", "pmid": "22773627", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Hypersaline Lake Metagenome"}, {"acc": "PRJNA81851", "pmid": "23853523", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Hypersaline Lake Metagenome"}]}, "andralojc km": {"display": "Andralojc KM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA856437", "pmid": "36171433", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cervicovaginal microbial communities and hrHPV infections"}, {"acc": "PRJNA856437", "pmid": "37731597", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cervicovaginal microbial communities and hrHPV infections"}, {"acc": "PRJNA856437", "pmid": null, "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cervicovaginal microbial communities and hrHPV infections"}, {"acc": "PRJNA888791", "pmid": "36171433", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Longitudinal profiling of the cervicovaginal microbiome"}, {"acc": "PRJNA888791", "pmid": "37731597", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Longitudinal profiling of the cervicovaginal microbiome"}, {"acc": "PRJNA888791", "pmid": null, "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Longitudinal profiling of the cervicovaginal microbiome"}]}, "andre-frei v": {"display": "André-Frei V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1013332", "pmid": "38206014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Scalp microbiome study"}]}, "andree c": {"display": "Andree C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42185", "pmid": "34192537", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}]}, "andrei as": {"display": "Andrei AS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884026", "pmid": "36724220", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic investigation of lake Issyk-Kul, Kyrgyzstan"}]}, "andremont a": {"display": "Andremont A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB24843", "pmid": "30714464", "pos": null, "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "The intestinal microbiota predisposes to traveller’s diarrhoea and to the carriage of mul…"}, {"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}]}, "andres c": {"display": "Andrés C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "andresen jh": {"display": "Andresen JH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29052", "pmid": "30505830", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}]}, "andreu-sanchez s": {"display": "Andreu-Sánchez S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}, {"acc": "PRJNA592050", "pmid": "31738985", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Air genomes from surgical room Raw sequence reads"}]}, "andrews b": {"display": "Andrews B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1236379", "pmid": "40886152", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Infant BBB"}, {"acc": "PRJNA895372", "pmid": "38303501", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiome function and neurodevelopment in Black infants: Vitamin B12 biosynthesis emerg…"}]}, "andrews mc": {"display": "Andrews MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "andrey do": {"display": "Andrey DO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44214", "pmid": "34983654", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in the gut microbiome in colon cancer surgery patients: a pilot observational stu…"}]}, "andrikopoulos p": {"display": "Andrikopoulos P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "androphy ej": {"display": "Androphy EJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "ang l": {"display": "Ang L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6972", "pmid": "25491920", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The microbial colonization of the intestine during the first monthsof life constitutes th…"}]}, "ang qy": {"display": "Ang QY", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA412411", "pmid": "34163067", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "angel nz": {"display": "Angel NZ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1156595", "pmid": "39827146", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics: a new frontier for routine pathology testing of gastrointestinal pathogens"}, {"acc": "PRJNA1200893", "pmid": "41809988", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}]}, "angelini l": {"display": "Angelini L", "group": false, "n_studies": 76, "studies": [{"acc": "PRJDB4176", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB17784", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The fecal microbiota in L-DOPA naive PD patients"}, {"acc": "PRJEB21528", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB23662", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A novel affordable reagent for room temperature storage and transport of fecal samples fo…"}, {"acc": "PRJEB24557", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Alterations of the intestinal microbiome in patients with retinal artery occlusion"}, {"acc": "PRJEB25514", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A cross-sectional study of compositional and functional profiles of gut microbiota in Sar…"}, {"acc": "PRJEB28338", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Influence of travel on the gut microbiome of cricketers"}, {"acc": "PRJEB30924", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Comparative analysis of amplicon and metagenomic sequencing methods reveals key features…"}, {"acc": "PRJEB33013", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB35615", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Associations between the intestinal microbiome and the complement system in age-related m…"}, {"acc": "PRJEB36820", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB39813", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenomic study of the oral (saliva) and Gut (stool) microbiome in subjects with Croh…"}, {"acc": "PRJEB44737", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB6092", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "metagenome fecal microbiota, Ilumina seq reads of 12 individuals at 2 timepoints"}, {"acc": "PRJEB8347", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJEB9576", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA299502", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA319574", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA321218", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA324129", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human fecal microbiome before and after consumption of AH1206 - Raw sequence reads"}, {"acc": "PRJNA324672", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA331138", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of Italian metagenome"}, {"acc": "PRJNA339012", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics analysis of donor and recepient samples from fecal transplant for Recurrent…"}, {"acc": "PRJNA340216", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota and metagenomic diversity of omnivore, vegetarian and vegan healthy subjec…"}, {"acc": "PRJNA356102", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA360177", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA371647", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Raw sequence reads"}, {"acc": "PRJNA373879", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Healthy human fecal metagenomes variably reactivate Irinotecan active metabolite"}, {"acc": "PRJNA379741", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "MECFS metagenomics"}, {"acc": "PRJNA382011", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics-Guided Pathogen Discovery in Travelers' Diarrhea"}, {"acc": "PRJNA384716", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA389927", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Viral and Bacterial Communities of Colorectal Cancer"}, {"acc": "PRJNA397219", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA412411", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA414479", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Total lipopolysaccharide from the human gut microbiome silences toll-like receptor signal…"}, {"acc": "PRJNA418941", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota functionality of healthy controls and individuals with kidney stones"}, {"acc": "PRJNA421881", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA428202", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "healthy human gut metagenomics"}, {"acc": "PRJNA431482", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA449784", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA485056", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA487305", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Effects of non-nutritive sweeteners on the composition of the human gut microbiome"}, {"acc": "PRJNA499081", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}, {"acc": "PRJNA503909", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA509512", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiota changes are associated with acquisition of antibiotic resistant genes among in…"}, {"acc": "PRJNA521587", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA529124", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA532538", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome of the gut microbiota in multiple system atrophy patients"}, {"acc": "PRJNA597839", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota, visceral fat and sleeve gastrectomy"}, {"acc": "PRJNA613834", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Functional Microbial Responses to Alcohol Abstinence in Patients with Alcohol Use Disorder"}, {"acc": "PRJNA615162", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615842", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}, {"acc": "PRJNA626004", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics Fecal Microbiome Dysbiosis in Parkinsons Disease"}, {"acc": "PRJNA628604", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}, {"acc": "PRJNA634145", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA637175", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}, {"acc": "PRJNA637878", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA649316", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Hi-C and metagenomic sequencing of neutropenic patient microbiomes"}, {"acc": "PRJNA663646", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "External validation cohorts for CRC-SNP analysis"}, {"acc": "PRJNA664544", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut microbes Metagenome"}, {"acc": "PRJNA665061", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665854", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS of feces and saliva of pancreatic cancer patients"}, {"acc": "PRJNA678426", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes."}, {"acc": "PRJNA678454", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of stool samples from two South African cohorts"}, {"acc": "PRJNA679346", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA685797", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The Influence of the gut microbiome on BCG-induced trained immunity"}, {"acc": "PRJNA686265", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-mediated metabolism effects on immunity in rural and urban African populat…"}, {"acc": "PRJNA692830", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole genome metagenomic analysis of the gut microbiome in HIV-1 infected individuals on…"}, {"acc": "PRJNA705895", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA714678", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA742740", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiota of Kidney Stone patients and live-in partners"}, {"acc": "PRJNA750475", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Longitudinal Analysis of Gut Microbiome among healthy women"}, {"acc": "PRJNA762543", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA763503", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Character of microbial engraftment following the fecal microbiota transplantation in pati…"}, {"acc": "PRJNA772518", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}]}, "angheben a": {"display": "Angheben A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB121228", "pmid": "38793608", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}, {"acc": "PRJEB121228", "pmid": "41683794", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}]}, "angioni s": {"display": "Angioni S", "group": false, "n_studies": 36, "studies": [{"acc": "PRJDB4525", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics of fecal bacterial consortium inhabiting healthy Asian children"}, {"acc": "PRJEB12669", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB32631", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB41102", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB42363", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB6456", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA215106", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA268964", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA290380", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA300541", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA322188", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA345144", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA422569", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA436562", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489693", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA497734", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA521878", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA549787", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA633576", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA644725", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA686821", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics data from human stool microorganism Raw sequence reads"}, {"acc": "PRJNA688164", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA695570", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA833139", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gender-specific cross-generational microbial persistence of human gut microbes"}, {"acc": "PRJNA991269", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "angius a": {"display": "Angius A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}, {"acc": "PRJNA615842", "pmid": "33494335", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}]}, "anjum mf": {"display": "Anjum MF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "34609275", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "annan mo": {"display": "Annan MO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "annibaldis g": {"display": "Annibaldis G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "anr microobes consortium": {"display": "ANR MicroObes consortium", "group": true, "n_studies": 1, "studies": [{"acc": "PRJEB4413", "pmid": "23985875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary intervention impact on gut microbial gene richness based on SOLiD next generation…"}]}, "ansa u": {"display": "Ansa U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "ansone l": {"display": "Ansone L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62817", "pmid": "38868903", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome encoded purine and amino acid pathways present prospective biomarkers for…"}]}, "anticipate study group": {"display": "ANTICIPATE study group", "group": true, "n_studies": 1, "studies": [{"acc": "PRJNA685914", "pmid": "33854066", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiota-based markers predictive of development of Clostridioides difficile infection"}]}, "antin jh": {"display": "Antin JH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "anton a": {"display": "Antón A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "antonio m": {"display": "Antonio M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "antony at": {"display": "Antony AT", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37731", "pmid": "42203854", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB38528", "pmid": "42203854", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}]}, "antony l": {"display": "Antony L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA484151", "pmid": "31379808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural and Urban infant''s fecal microbiota study"}]}, "antranikian g": {"display": "Antranikian G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA609054", "pmid": "33416984", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic data set of enrichment samples from azores 2018 Raw sequence reads"}]}, "antson a": {"display": "Antson A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA950101", "pmid": "39449105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomes from aquatic ecosystems of the Central Arctic"}]}, "anzalone r": {"display": "Anzalone R", "group": false, "n_studies": 113, "studies": [{"acc": "PRJDB4176", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB12669", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB17784", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The fecal microbiota in L-DOPA naive PD patients"}, {"acc": "PRJEB1786", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB21528", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB23662", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A novel affordable reagent for room temperature storage and transport of fecal samples fo…"}, {"acc": "PRJEB24557", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Alterations of the intestinal microbiome in patients with retinal artery occlusion"}, {"acc": "PRJEB24771", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB25514", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A cross-sectional study of compositional and functional profiles of gut microbiota in Sar…"}, {"acc": "PRJEB28338", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Influence of travel on the gut microbiome of cricketers"}, {"acc": "PRJEB30924", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Comparative analysis of amplicon and metagenomic sequencing methods reveals key features…"}, {"acc": "PRJEB32135", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB33013", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB35615", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Associations between the intestinal microbiome and the complement system in age-related m…"}, {"acc": "PRJEB36820", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB39813", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenomic study of the oral (saliva) and Gut (stool) microbiome in subjects with Croh…"}, {"acc": "PRJEB44737", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB6092", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "metagenome fecal microbiota, Ilumina seq reads of 12 individuals at 2 timepoints"}, {"acc": "PRJEB6456", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB8347", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJEB9576", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA272371", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA319574", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA321218", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA321218", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA322188", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA324129", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human fecal microbiome before and after consumption of AH1206 - Raw sequence reads"}, {"acc": "PRJNA324672", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA331138", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of Italian metagenome"}, {"acc": "PRJNA336518", "pmid": "36123315", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA339012", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics analysis of donor and recepient samples from fecal transplant for Recurrent…"}, {"acc": "PRJNA339914", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA340216", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota and metagenomic diversity of omnivore, vegetarian and vegan healthy subjec…"}, {"acc": "PRJNA345144", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA360177", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA362284", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA371647", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Raw sequence reads"}, {"acc": "PRJNA373879", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Healthy human fecal metagenomes variably reactivate Irinotecan active metabolite"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379741", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "MECFS metagenomics"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}, {"acc": "PRJNA382011", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics-Guided Pathogen Discovery in Travelers' Diarrhea"}, {"acc": "PRJNA384716", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA389927", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Viral and Bacterial Communities of Colorectal Cancer"}, {"acc": "PRJNA397219", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA412411", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA414479", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Total lipopolysaccharide from the human gut microbiome silences toll-like receptor signal…"}, {"acc": "PRJNA418941", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota functionality of healthy controls and individuals with kidney stones"}, {"acc": "PRJNA421881", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA422434", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422569", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA428202", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "healthy human gut metagenomics"}, {"acc": "PRJNA431482", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA449784", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA473126", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA482729", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of native and acetylated high amylose maize starch on fecal pH, short chain fatty…"}, {"acc": "PRJNA485056", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA486795", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Modification of gut microbiota-bile acid-intestinal FXR signaling leads to the clinical b…"}, {"acc": "PRJNA487305", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Effects of non-nutritive sweeteners on the composition of the human gut microbiome"}, {"acc": "PRJNA492716", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA499081", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}, {"acc": "PRJNA503909", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA509512", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiota changes are associated with acquisition of antibiotic resistant genes among in…"}, {"acc": "PRJNA518912", "pmid": "36123315", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA521587", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA524703", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA529124", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA532538", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome of the gut microbiota in multiple system atrophy patients"}, {"acc": "PRJNA542703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA547717", "pmid": "36123315", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "human oral metagenome Raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA557731", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA562766", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA597839", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota, visceral fat and sleeve gastrectomy"}, {"acc": "PRJNA613834", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Functional Microbial Responses to Alcohol Abstinence in Patients with Alcohol Use Disorder"}, {"acc": "PRJNA615162", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615842", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}, {"acc": "PRJNA626004", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics Fecal Microbiome Dysbiosis in Parkinsons Disease"}, {"acc": "PRJNA628604", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}, {"acc": "PRJNA634145", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA637175", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}, {"acc": "PRJNA637878", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA637878", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA649316", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Hi-C and metagenomic sequencing of neutropenic patient microbiomes"}, {"acc": "PRJNA663646", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "External validation cohorts for CRC-SNP analysis"}, {"acc": "PRJNA664544", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut microbes Metagenome"}, {"acc": "PRJNA665061", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665854", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS of feces and saliva of pancreatic cancer patients"}, {"acc": "PRJNA678426", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes."}, {"acc": "PRJNA678454", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of stool samples from two South African cohorts"}, {"acc": "PRJNA679346", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA685797", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The Influence of the gut microbiome on BCG-induced trained immunity"}, {"acc": "PRJNA686265", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-mediated metabolism effects on immunity in rural and urban African populat…"}, {"acc": "PRJNA692830", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole genome metagenomic analysis of the gut microbiome in HIV-1 infected individuals on…"}, {"acc": "PRJNA698986", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA705895", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA714678", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA715615", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural infant gut microbiota"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}, {"acc": "PRJNA742740", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiota of Kidney Stone patients and live-in partners"}, {"acc": "PRJNA750475", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Longitudinal Analysis of Gut Microbiome among healthy women"}, {"acc": "PRJNA762543", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA763503", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Character of microbial engraftment following the fecal microbiota transplantation in pati…"}, {"acc": "PRJNA772518", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}]}, "anzinger jj": {"display": "Anzinger JJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "aoki h": {"display": "Aoki H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB5383", "pmid": "28095784", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of a novel bovine enterovirus possessing highly divergent amino acid seque…"}]}, "aoki r": {"display": "Aoki R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "appelberg ks": {"display": "Appelberg KS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633381", "pmid": "33662387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "IgA deficiency microbiota"}]}, "appenzeller bmr": {"display": "Appenzeller BMR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA478488", "pmid": "32591010", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Chinese human skin metagenome"}]}, "apps r": {"display": "Apps R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "aquino db": {"display": "Aquino DB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29970463", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "aquino jn": {"display": "Aquino JN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "arai y": {"display": "Arai Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "arboleya s": {"display": "Arboleya S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6972", "pmid": "25491920", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The microbial colonization of the intestine during the first monthsof life constitutes th…"}]}, "archer sd": {"display": "Archer SD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "archie ea": {"display": "Archie EA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB29065", "pmid": "37158607", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Daily sampling reveals personalized diet-microbiome associations"}, {"acc": "PRJNA290380", "pmid": "37158607", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "arcila me": {"display": "Arcila ME", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "arcilla ms": {"display": "Arcilla MS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA688274", "pmid": "34092249", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Netherland Travelers"}]}, "ard kl": {"display": "Ard KL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "30429252", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "ardelean cf": {"display": "Ardelean CF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "ardis ak": {"display": "Ardis AK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}]}, "ardis ck": {"display": "Ardis CK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}]}, "arduino m": {"display": "Arduino M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156457", "pmid": "39731681", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acanthamoeba sequencing"}]}, "arefaine b": {"display": "Arefaine B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1307628", "pmid": "41461922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbial oral-gut translocation in advanced chronic liver disease is linked to exacerbat…"}]}, "argaw a": {"display": "Argaw A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1113165", "pmid": "40102379", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}]}, "argentini c": {"display": "Argentini C", "group": false, "n_studies": 108, "studies": [{"acc": "PRJDB4176", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB12669", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB17784", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The fecal microbiota in L-DOPA naive PD patients"}, {"acc": "PRJEB1786", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB21528", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB23662", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A novel affordable reagent for room temperature storage and transport of fecal samples fo…"}, {"acc": "PRJEB24557", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Alterations of the intestinal microbiome in patients with retinal artery occlusion"}, {"acc": "PRJEB24771", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB25514", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A cross-sectional study of compositional and functional profiles of gut microbiota in Sar…"}, {"acc": "PRJEB28338", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Influence of travel on the gut microbiome of cricketers"}, {"acc": "PRJEB30924", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Comparative analysis of amplicon and metagenomic sequencing methods reveals key features…"}, {"acc": "PRJEB32135", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB33013", "pmid": "38426063", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB35615", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Associations between the intestinal microbiome and the complement system in age-related m…"}, {"acc": "PRJEB36820", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB39813", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenomic study of the oral (saliva) and Gut (stool) microbiome in subjects with Croh…"}, {"acc": "PRJEB44737", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB6092", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "metagenome fecal microbiota, Ilumina seq reads of 12 individuals at 2 timepoints"}, {"acc": "PRJEB6456", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB8347", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJEB9576", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA272371", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA287207", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA319574", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA321218", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA321218", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA322188", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA324129", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human fecal microbiome before and after consumption of AH1206 - Raw sequence reads"}, {"acc": "PRJNA324672", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA331138", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of Italian metagenome"}, {"acc": "PRJNA336518", "pmid": "36123315", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA339012", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics analysis of donor and recepient samples from fecal transplant for Recurrent…"}, {"acc": "PRJNA339914", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA340216", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota and metagenomic diversity of omnivore, vegetarian and vegan healthy subjec…"}, {"acc": "PRJNA345144", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA360177", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA362284", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA371647", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Raw sequence reads"}, {"acc": "PRJNA373879", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Healthy human fecal metagenomes variably reactivate Irinotecan active metabolite"}, {"acc": "PRJNA379741", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "MECFS metagenomics"}, {"acc": "PRJNA382011", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics-Guided Pathogen Discovery in Travelers' Diarrhea"}, {"acc": "PRJNA384716", "pmid": "38426063", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA389927", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Viral and Bacterial Communities of Colorectal Cancer"}, {"acc": "PRJNA397219", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA412411", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA414479", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Total lipopolysaccharide from the human gut microbiome silences toll-like receptor signal…"}, {"acc": "PRJNA418941", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota functionality of healthy controls and individuals with kidney stones"}, {"acc": "PRJNA421881", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA422434", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422569", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA428202", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "healthy human gut metagenomics"}, {"acc": "PRJNA431482", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA449784", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA482729", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of native and acetylated high amylose maize starch on fecal pH, short chain fatty…"}, {"acc": "PRJNA485056", "pmid": "38426063", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA486795", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Modification of gut microbiota-bile acid-intestinal FXR signaling leads to the clinical b…"}, {"acc": "PRJNA487305", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Effects of non-nutritive sweeteners on the composition of the human gut microbiome"}, {"acc": "PRJNA492716", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA499081", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}, {"acc": "PRJNA503909", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38426063", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA509512", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiota changes are associated with acquisition of antibiotic resistant genes among in…"}, {"acc": "PRJNA518912", "pmid": "36123315", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA521587", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA524703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA529124", "pmid": "38426063", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA532538", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome of the gut microbiota in multiple system atrophy patients"}, {"acc": "PRJNA542703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA547717", "pmid": "36123315", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "human oral metagenome Raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA557731", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA562766", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA597839", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota, visceral fat and sleeve gastrectomy"}, {"acc": "PRJNA613834", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Functional Microbial Responses to Alcohol Abstinence in Patients with Alcohol Use Disorder"}, {"acc": "PRJNA615162", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615842", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}, {"acc": "PRJNA626004", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics Fecal Microbiome Dysbiosis in Parkinsons Disease"}, {"acc": "PRJNA628604", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}, {"acc": "PRJNA634145", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA637175", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}, {"acc": "PRJNA637878", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA637878", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA649316", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Hi-C and metagenomic sequencing of neutropenic patient microbiomes"}, {"acc": "PRJNA663646", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "External validation cohorts for CRC-SNP analysis"}, {"acc": "PRJNA664544", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut microbes Metagenome"}, {"acc": "PRJNA665061", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665854", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS of feces and saliva of pancreatic cancer patients"}, {"acc": "PRJNA678426", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes."}, {"acc": "PRJNA678454", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of stool samples from two South African cohorts"}, {"acc": "PRJNA679346", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA685797", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The Influence of the gut microbiome on BCG-induced trained immunity"}, {"acc": "PRJNA686265", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-mediated metabolism effects on immunity in rural and urban African populat…"}, {"acc": "PRJNA692830", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole genome metagenomic analysis of the gut microbiome in HIV-1 infected individuals on…"}, {"acc": "PRJNA698773", "pmid": "33973321", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA698986", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA705895", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA714678", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA742740", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiota of Kidney Stone patients and live-in partners"}, {"acc": "PRJNA750475", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Longitudinal Analysis of Gut Microbiome among healthy women"}, {"acc": "PRJNA762543", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA763503", "pmid": "38426063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Character of microbial engraftment following the fecal microbiota transplantation in pati…"}, {"acc": "PRJNA772518", "pmid": "38426063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA782810", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Exploring the species-level infant gut bacterial biodiversity through a meta-analysis and…"}]}, "ariani y": {"display": "Ariani Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1077459", "pmid": "38883202", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Trio Whole Exome Sequencing of Rare Disease"}]}, "arias cf": {"display": "Arias CF", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA171119", "pmid": "20976137", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}, {"acc": "PRJNA592261", "pmid": "32788688", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "35196791", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "36650178", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}]}, "arias guzman ne": {"display": "Arias Guzman NE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1200893", "pmid": "41809988", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}]}, "arifeen se": {"display": "Arifeen SE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39143045", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "arikan m": {"display": "Arıkan M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB22200", "pmid": "31957879", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenomic Analysis of Microbial Composition of Kombucha"}, {"acc": "PRJNA1375659", "pmid": "42003651", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Antibiotic resistance gene profile in pigeon fecal microbiomes by shotgun metagenomics"}]}, "arikawa ay": {"display": "Arikawa AY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912638", "pmid": "37213047", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MICROBIOME IN AGING GUT AND BRAIN (MiaGB) STUDY"}]}, "arikawa k": {"display": "Arikawa K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA692334", "pmid": "34641955", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Recovery of high-quality assembled genomes via single-cell genome-guided binning of metag…"}]}, "arilli c": {"display": "Arilli C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "arino m": {"display": "Arino M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1184197", "pmid": "39856104", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Dietary fiber content in clinical ketogenic diets modifies the gut microbiome and seizure…"}]}, "arita m": {"display": "Arita M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "arkkila pa": {"display": "Arkkila PA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA446038", "pmid": "30526683", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}]}, "armand-lefevre l": {"display": "Armand-Lefèvre L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24843", "pmid": "30714464", "pos": null, "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "The intestinal microbiota predisposes to traveller’s diarrhoea and to the carriage of mul…"}]}, "armanini f": {"display": "Armanini F", "group": false, "n_studies": 24, "studies": [{"acc": "PRJEB15371", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB63351", "pmid": "38104504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neuroblastoma is associated with alterations in gut microbiome composition subsequent to…"}, {"acc": "PRJEB6456", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB74322", "pmid": "38870906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJNA1140720", "pmid": "41565819", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Modelling human microbiome transmission in a nursery setting"}, {"acc": "PRJNA231909", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "30661755", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "28144631", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}, {"acc": "PRJNA48479", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA504891", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA643802", "pmid": "32859933", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "FMT for diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal…"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "armbruster cr": {"display": "Armbruster CR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081394", "pmid": "38564694", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sinus, throat, and sputum airway microbiology in cystic fibrosis"}]}, "armijo g": {"display": "Armijo G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "armstrong d": {"display": "Armstrong D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "armstrong e": {"display": "Armstrong E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA208535", "pmid": "40607829", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The daily dynamics of the vaginal microbiota before and after bacterial vaginosis"}]}, "armstrong hk": {"display": "Armstrong HK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "arnau v": {"display": "Arnau V", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB39661", "pmid": "41513932", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}, {"acc": "PRJEB62571", "pmid": "41513932", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}]}, "arnau-soler a": {"display": "Arnau-Soler A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "arner e": {"display": "Arner E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "arnlov j": {"display": "Ärnlöv J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "arnold bf": {"display": "Arnold BF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "arnott a": {"display": "Arnott A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "aron-wisnewsky j": {"display": "Aron-Wisnewsky J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB23292", "pmid": "29899081", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysbiosis, including decreased gut microbial richness (MGR) and composition modifications…"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "arora m": {"display": "Arora M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39474439", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}, {"acc": "PRJNA975184", "pmid": "39640590", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "arora r": {"display": "Arora R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}, {"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "arora t": {"display": "Arora T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB127029", "pmid": "26552345", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abun…"}, {"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}]}, "arp g": {"display": "Arp G", "group": false, "n_studies": 40, "studies": [{"acc": "PRJEB1220", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB22207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJEB32135", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9576", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA188481", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA221723", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA305507", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA319574", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA322188", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA328899", "pmid": "38172624", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA398089", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA436562", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA485056", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA489090", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA504891", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA510445", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA542703", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA557731", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA633576", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA715601", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA853174", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "arp k": {"display": "Arp K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA555020", "pmid": "31676793", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA613032", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life and effects of early life antibiotics, annotated shotgun s…"}, {"acc": "PRJNA613054", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal resistome in early life and effects of early life antibiotics, annotated shotgun se…"}]}, "arriaza b": {"display": "Arriaza B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB104199", "pmid": "42531397", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "The genomic identity of early smallpox in South America"}]}, "arrieta mc": {"display": "Arrieta MC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1055141", "pmid": "42336834", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool shallow shotgun sequencing (ANTIBIO)"}, {"acc": "PRJNA1258733", "pmid": "42127418", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Metagenome"}]}, "arroyas m": {"display": "Arroyas M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB71847", "pmid": "38785596", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Gut and respiratory tract microbiota in children younger than 12 months hospitalised for…"}]}, "arroyo-cabrales j": {"display": "Arroyo-Cabrales J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "arscott-mills t": {"display": "Arscott-Mills T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "arshad m": {"display": "Arshad M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130109", "pmid": "39081889", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome study"}]}, "arslanoglu s": {"display": "Arslanoglu S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26810", "pmid": "34071061", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}, {"acc": "PRJEB26810", "pmid": "38257101", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}]}, "arsuaga jl": {"display": "Arsuaga JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9783", "pmid": "26351665", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing Chalcolithic human remains from El Portalón, Spain"}]}, "artacho a": {"display": "Artacho A", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB3085", "pmid": "23236009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}, {"acc": "PRJEB39661", "pmid": "41513932", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}, {"acc": "PRJEB5185", "pmid": "25407519", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysfunctional gut microbiota drives chronic immune activation in HIV-treated individuals"}, {"acc": "PRJEB62571", "pmid": "41513932", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}]}, "artan r": {"display": "Artan R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "arthur td": {"display": "Arthur TD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "arts icw": {"display": "Arts ICW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26795", "pmid": "30609941", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}]}, "artyushin iv": {"display": "Artyushin IV", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA755866", "pmid": "34696436", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viruses in Bats"}, {"acc": "PRJNA755887", "pmid": "34696436", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Viruses in Bats"}]}, "arumugam m": {"display": "Arumugam M", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "arzamasov aa": {"display": "Arzamasov AA", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB6456", "pmid": "35768643", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}]}, "arze c": {"display": "Arze C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA398089", "pmid": "35614211", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}]}, "arze ca": {"display": "Arze CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA679286", "pmid": "34320399", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Global genome analyses reveal a vast and dynamic anellovirus landscape within the human v…"}]}, "arzika am": {"display": "Arzika AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "arzoomand a": {"display": "Arzoomand A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "ashour mse": {"display": "Ashour MSE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA771993", "pmid": "34827320", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Antimicrobial Discovery from Alcaligenes faecalis A Metagenomics-Nanopore sequencing Appr…"}, {"acc": "PRJNA785410", "pmid": "35052889", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Antimicrobial Discovery from Paenibacillus ehimensis A Metagenomics-Nanopore sequencing A…"}]}, "ashraf s": {"display": "Ashraf S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}]}, "ashrafian h": {"display": "Ashrafian H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473348", "pmid": "36217535", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effect of bariatric surgery on the faecal metagenome"}]}, "aslampaloglou a": {"display": "Aslampaloglou A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA926386", "pmid": "37635262", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Phagestorage"}]}, "asnaghi l": {"display": "Asnaghi L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA745199", "pmid": "29340642", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics sequencing of infectious microbes from ocular sarcoidosis tissue specimens"}]}, "asnicar f": {"display": "Asnicar F", "group": false, "n_studies": 22, "studies": [{"acc": "PRJEB15371", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB63351", "pmid": "38104504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neuroblastoma is associated with alterations in gut microbiome composition subsequent to…"}, {"acc": "PRJEB6456", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1140720", "pmid": "41565819", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Modelling human microbiome transmission in a nursery setting"}, {"acc": "PRJNA231909", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA300541", "pmid": "42312244", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA328899", "pmid": "30661755", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "28144631", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}, {"acc": "PRJNA48479", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA504891", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "32427907", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA643802", "pmid": "32859933", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "FMT for diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal…"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}]}, "aspillaga e": {"display": "Aspillaga E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "assefa n": {"display": "Assefa N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "33553097", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "assis jm": {"display": "Assis JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA649484", "pmid": "34389536", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "assmann k": {"display": "Assmann K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}]}, "assumpcao alfv": {"display": "Assumpcao ALFV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA977671", "pmid": "38320392", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Microbiome analysis of cold related stress in poultry"}]}, "astolfi a": {"display": "Astolfi A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA877820", "pmid": "32209716", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "astorga alsina al": {"display": "Astorga Alsina AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA907943", "pmid": "36949471", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Characterisation and isolation of novel host-associated Methanocorpusculum species from n…"}]}, "astrup a": {"display": "Astrup A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB25727", "pmid": "31138673", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The impact of AXOS intake in overweight individuals with metabolic syndrome."}]}, "aswath k": {"display": "Aswath K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28302791", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "ataeian m": {"display": "Ataeian M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA377096", "pmid": "35222325", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soda lake innocuated bioreactors"}]}, "ataide r": {"display": "Ataide R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39143045", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}, {"acc": "PRJNA1081952", "pmid": "39367018", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "atarashi k": {"display": "Atarashi K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}, {"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "atherton l": {"display": "Atherton L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "atienza ee": {"display": "Atienza EE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "27974546", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28100494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "atmar rl": {"display": "Atmar RL", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "39282326", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "aton m": {"display": "Aton M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA602729", "pmid": "40158141", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}]}, "atteih s": {"display": "Atteih S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081394", "pmid": "38564694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sinus, throat, and sputum airway microbiology in cystic fibrosis"}]}, "attri sv": {"display": "Attri SV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1304237", "pmid": "41017911", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota Signatures in Indian Preterm Infants with Necrotizing Enterocolitis"}]}, "attwood gt": {"display": "Attwood GT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "atua r": {"display": "Atua R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "atucha j": {"display": "Atucha J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB71847", "pmid": "38785596", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Gut and respiratory tract microbiota in children younger than 12 months hospitalised for…"}]}, "aube j": {"display": "Aubé J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445968", "pmid": "30282828", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}]}, "auchtung jm": {"display": "Auchtung JM", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA268964", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA392180", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA485056", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA497734", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "auchtung ta": {"display": "Auchtung TA", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA268964", "pmid": "35672407", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "35672407", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA392180", "pmid": "35672407", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA485056", "pmid": "35672407", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA497734", "pmid": "35672407", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "audinot jn": {"display": "Audinot JN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "26505828", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "auer mk": {"display": "Auer MK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB86263", "pmid": "39218875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gender-affirming hormonal therapy induces a gender-concordant fecal metagenome transition…"}]}, "auewarakul cu": {"display": "Auewarakul CU", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "auffret md": {"display": "Auffret MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21624", "pmid": "29491419", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of the rumen of Scottish cattle."}]}, "aunsholt l": {"display": "Aunsholt L", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB6456", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB97976", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome maturation during weaning"}, {"acc": "PRJEB97980", "pmid": "42203770", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential impact of doxycycline treatment on antimicrobial resistance genes in the enteri…"}, {"acc": "PRJEB98012", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Creeping Fat"}, {"acc": "PRJEB98069", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Distinct Microbial and Resistome Signatures Differentiate Healthy and Inflamed Ileal Pouc…"}]}, "autenrieth ib": {"display": "Autenrieth IB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB10391", "pmid": "26369961", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of ciprofloxacin pertubation on the intestinal resistome and microbiota in two hea…"}]}, "auvinen p": {"display": "Auvinen P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59350", "pmid": "39143178", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "deep shotgun DNA sequencing of 136 patient’s fecal samples (Parkinson vs Control)"}, {"acc": "PRJEB59350", "pmid": "40258842", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "deep shotgun DNA sequencing of 136 patient’s fecal samples (Parkinson vs Control)"}]}, "avadhanula v": {"display": "Avadhanula V", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1195144", "pmid": null, "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1224818", "pmid": "38361816", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with n…"}]}, "avagliano m": {"display": "Avagliano M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}]}, "avanzi c": {"display": "Avanzi C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}, {"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "avenant nl": {"display": "Avenant NL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA942254", "pmid": "37650612", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomics of fecal samples from ant-eating mammal species"}]}, "avendano cc": {"display": "Avendaño CC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA907865", "pmid": "37486790", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhinovirus raw sequence reads"}]}, "averhoff f": {"display": "Averhoff F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1079728", "pmid": "38655084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Next-generation sequencing survey of acute febrile illness in Senegal (2020-2022)"}]}, "avery eg": {"display": "Avery EG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}]}, "avila-pacheco j": {"display": "Avila-Pacheco J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}]}, "avnit-sagi t": {"display": "Avnit-Sagi T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "aw mm": {"display": "Aw MM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA272371", "pmid": "29049378", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}]}, "axfors c": {"display": "Axfors C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62678", "pmid": "31641004", "pos": "first", "reason_code": null, "src": "B", "status": "human_review", "title_short": "BASIC: Biology, Affect, Stress, Imaging and Cognition in pregnancy"}]}, "aydemir o": {"display": "Aydemir O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26810", "pmid": "34071061", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}, {"acc": "PRJEB26810", "pmid": "38257101", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}]}, "aydin a": {"display": "Aydin A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA722408", "pmid": "36076058", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}, {"acc": "PRJNA722408", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}]}, "aydin o": {"display": "Aydin O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "aykut b": {"display": "Aykut B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557226", "pmid": "31578522", "pos": "first", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}]}, "aylward w": {"display": "Aylward W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352376", "pmid": "28072390", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}]}, "ayolabi ci": {"display": "Ayolabi CI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73590", "pmid": "38003822", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}]}, "azad mb": {"display": "Azad MB", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "37644001", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "40623174", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "42337243", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "azimzadeh pn": {"display": "Azimzadeh PN", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32631", "pmid": "40328944", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA400628", "pmid": "40328944", "pos": null, "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "Escherichia coli Genome sequencing and assembly"}]}, "azua i": {"display": "Azua I", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "azzatto f": {"display": "Azzatto F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "babak v": {"display": "Babak V", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB12124", "pmid": "38652229", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-dependent stratification of patients for anti-diabetic treatment"}, {"acc": "PRJNA563062", "pmid": "38652229", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Capybara (Hydrochoerus hydrochaeris) Metagenome"}, {"acc": "PRJNA684904", "pmid": "38652229", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "human gut metagenome Genome sequencing and assembly"}, {"acc": "PRJNA747761", "pmid": "38652229", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Atlanta, USA and Maputo, Mozambique Children gut microbiome Metagenome"}]}, "babdor j": {"display": "Babdor J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "babina m": {"display": "Babina M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "bacallado s": {"display": "Bacallado S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA400072", "pmid": "41299229", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA615162", "pmid": "41299229", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA821542", "pmid": "41299229", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut metagenomes from mothers and their infants in the EDIA study"}]}, "bacalzo np": {"display": "Bacalzo NP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}]}, "bacharier lb": {"display": "Bacharier LB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59709", "pmid": "38560624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut metagenome harbors metabolic and antibiotic resistance signatures of established…"}]}, "bachmann g": {"display": "Bachmann G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}]}, "backer s": {"display": "Backer S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1107349", "pmid": "38980166", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Polysaccharide degradation by microbial communities"}]}, "backhed f": {"display": "Bäckhed F", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB127029", "pmid": "26552345", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abun…"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}, {"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}]}, "backshell l": {"display": "Backshell L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}]}, "bacon t": {"display": "Bacon T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA977671", "pmid": "38320392", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Microbiome analysis of cold related stress in poultry"}]}, "bacorn m": {"display": "Bacorn M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA988496", "pmid": "38773685", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}]}, "baden lr": {"display": "Baden LR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "bader ac": {"display": "Bader AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657304", "pmid": "33542301", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun Sequencing of Dog Coprolites"}]}, "badger jh": {"display": "Badger JH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "badolato r": {"display": "Badolato R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "bae s": {"display": "Bae S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA398089", "pmid": "35614211", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}]}, "baelum j": {"display": "Bælum J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12466", "pmid": "26161690", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Meta-genomic analysis of toilet waste from long distance flights"}]}, "bagacay jfe": {"display": "Bagacay JFE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": "40631735", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "bagci s": {"display": "Bagci S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "baginska k": {"display": "Bagińska K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA943135", "pmid": "37577378", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diarrhoeal-associated gut dysbiosis in cancer and inflammatory bowel disease patients i…"}]}, "baguma a": {"display": "Baguma A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}]}, "baharmand i": {"display": "Baharmand I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB51728", "pmid": "39341154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "bahl mi": {"display": "Bahl MI", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA633381", "pmid": "33662387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "IgA deficiency microbiota"}, {"acc": "PRJNA812583", "pmid": "36352460", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level metagenomics reveal microbial transfer from donor to infant after fecal micr…"}]}, "bahr ls": {"display": "Bahr LS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}]}, "bahram m": {"display": "Bahram M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}]}, "bahre h": {"display": "Bähre H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51501", "pmid": "36416760", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Predicting butyrate- and propionate-forming bacteria of gut microbiota from sequencing da…"}, {"acc": "PRJEB51501", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Predicting butyrate- and propionate-forming bacteria of gut microbiota from sequencing da…"}]}, "bahring s": {"display": "Bähring S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}]}, "bai f": {"display": "Bai F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA497801", "pmid": "31701197", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "bovine fecal metagenome"}]}, "bai h": {"display": "Bai H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA776087", "pmid": "36973820", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}]}, "bai lp": {"display": "Bai LP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB57970", "pmid": "37139490", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "CCU infection"}]}, "bai m": {"display": "Bai M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA776087", "pmid": "36973820", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}]}, "bai q": {"display": "Bai Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA973819", "pmid": "38188910", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Pathogenetic characterization of a Micrococcus luteus strain isolated from an infant"}]}, "bai s": {"display": "Bai S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA336061", "pmid": "28801639", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prevotella enterotype related metagenome sequencing"}]}, "bai-tong ss": {"display": "Bai-Tong SS", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52147", "pmid": "35440708", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The Association Between Milk Feedings in the Preterm Population, the Microbiome and Risk…"}, {"acc": "PRJNA1086674", "pmid": "39138352", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Impact of Oral Feedings on the Preterm Infant Microbiome and Metabolome"}]}, "bailey r": {"display": "Bailey R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "bain jr": {"display": "Bain JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA145005", "pmid": "22030749", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}]}, "baird rw": {"display": "Baird RW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "bajagai ys": {"display": "Bajagai YS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA997754", "pmid": "38231265", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Pioneering gut health improvements in piglets with phytogenic feed additives"}]}, "bajic d": {"display": "Bajic D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "bajinting a": {"display": "Bajinting A", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA301903", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA701982", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic-driven intestinal dysbiosis in paediatric SBS alters microbiome functions and…"}]}, "bajorek s": {"display": "Bajorek S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA772730", "pmid": "35071138", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The FOUNDATION Study: Hospital Formulation Of B. infantis EVC001 Utilized In The NICU To…"}]}, "bak holm j": {"display": "Bak Holm J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "baker a": {"display": "Baker A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB62690", "pmid": "37513505", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, 5-HMO supplemented formula vs. control formula vs. breastfed"}, {"acc": "PRJNA1159139", "pmid": "39377603", "pos": null, "reason_code": "host_synthetic", "src": "L", "status": "excluded", "title_short": "I-TIM-2 validation (VAL)"}]}, "baker bj": {"display": "Baker BJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA278302", "pmid": "26787827", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Alaska oil reservoir Metagenome"}]}, "baker er": {"display": "Baker ER", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "32968156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "34215179", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35847562", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "36632065", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "36777525", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "baker jl": {"display": "Baker JL", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA478018", "pmid": "38826395", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The unexplored social language of bacteria in human oral health and disease"}, {"acc": "PRJNA525517", "pmid": "30975748", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Klebsiella and Providencia notch a tag-team victory in a battle royale of oral bacteria"}, {"acc": "PRJNA624185", "pmid": "33239396", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Deep metagenomics examines the oral microbiome during advanced dental caries in children,…"}, {"acc": "PRJNA624185", "pmid": "34110243", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Deep metagenomics examines the oral microbiome during advanced dental caries in children,…"}, {"acc": "PRJNA624185", "pmid": "34378983", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Deep metagenomics examines the oral microbiome during advanced dental caries in children,…"}]}, "baker js": {"display": "Baker JS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1052084", "pmid": "38260404", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intraspecies dynamics underlie the apparent stability of two important skin microbiome sp…"}, {"acc": "PRJNA1052084", "pmid": "40315837", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intraspecies dynamics underlie the apparent stability of two important skin microbiome sp…"}]}, "baker ks": {"display": "Baker KS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4647", "pmid": "26197475", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Search Engine for Antimicrobial Resistance: a cloud compatible pipeline and web interface…"}]}, "baker ld": {"display": "Baker LD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1088536", "pmid": "39030654", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of dietary zinc on the gut microbiome and resistome of the gestating cow and neon…"}]}, "baker r": {"display": "Baker R", "group": false, "n_studies": 11, "studies": [{"acc": "PRJNA221723", "pmid": "24468033", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "29180750", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "29180750", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA327106", "pmid": "28073918", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "29180750", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "29925423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376580", "pmid": "29180750", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hospital (NICU) surfaces and sinks"}, {"acc": "PRJNA376580", "pmid": "30770768", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hospital (NICU) surfaces and sinks"}, {"acc": "PRJNA396794", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA417343", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y5 Cohort)"}, {"acc": "PRJNA60717", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analysis of infant stool sample"}, {"acc": "PRJNA698986", "pmid": "34622230", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA698986", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA717139", "pmid": "34154658", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitaliz…"}]}, "baker rl": {"display": "Baker RL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417283", "pmid": "29988506", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}]}, "baker s": {"display": "Baker S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}, {"acc": "PRJEB21259", "pmid": "41144256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}, {"acc": "PRJEB21259", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}]}, "baker-austin c": {"display": "Baker-Austin C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB12083", "pmid": "28175320", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Metagenomes"}, {"acc": "PRJEB4647", "pmid": "26197475", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Search Engine for Antimicrobial Resistance: a cloud compatible pipeline and web interface…"}]}, "bakhash sakm": {"display": "Bakhash SAKM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA907066", "pmid": "36878012", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human respiratory syncytial virus Genome sequencing"}]}, "bakke i": {"display": "Bakke I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1233203", "pmid": null, "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Microbiome of recirculating aquaculture systems under different particle loads (MikroRAS)"}]}, "bakker a": {"display": "Bakker A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52640", "pmid": "37474785", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Longitudinal development of the airway metagenome of preterm very low birth weight infant…"}]}, "bakshani c": {"display": "Bakshani C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1230889", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}]}, "bakshani cr": {"display": "Bakshani CR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1230889", "pmid": "42020426", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}]}, "balabas a": {"display": "Bałabas A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA943135", "pmid": "37577378", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diarrhoeal-associated gut dysbiosis in cancer and inflammatory bowel disease patients i…"}]}, "balakrishnan s": {"display": "Balakrishnan S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "balasubramanian a": {"display": "Balasubramanian A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078280", "pmid": "38405928", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Quantifying forms and functions of intestinal bile acid pools in mice"}]}, "balcazo np": {"display": "Balcazo NP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}]}, "baldanzi g": {"display": "Baldanzi G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}, {"acc": "PRJNA300541", "pmid": "42312244", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "baldassano r": {"display": "Baldassano R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}]}, "baldassano rn": {"display": "Baldassano RN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "baldi a": {"display": "Baldi A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39143045", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}, {"acc": "PRJNA1081952", "pmid": "39367018", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "baldridge mt": {"display": "Baldridge MT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB7772", "pmid": "25619688", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}]}, "baldwin a": {"display": "Baldwin A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1235110", "pmid": "39798461", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome"}]}, "baleanu af": {"display": "Baleanu AF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB72531", "pmid": "38424099", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prebiotic intervention for muscle function and cognition"}]}, "bales kl": {"display": "Bales KL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "21779173", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "balestra c": {"display": "Balestra C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB77875", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Seawater metagenomes collected during Jellyfish enrichment experiment"}]}, "baliere c": {"display": "Balière C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1004259", "pmid": "38047654", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic and Amplicon-based Nanopore Sequencing of French Human Monkeypox direct from…"}]}, "baliga ns": {"display": "Baliga NS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "balini e": {"display": "Balini E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1113165", "pmid": "40102379", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}]}, "balkus je": {"display": "Balkus JE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA876771", "pmid": "36975801", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Vaginal microbiome metagenome inference accuracy: differential measurement error accordin…"}]}, "ballen kk": {"display": "Ballen KK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "ballesteros solis fa": {"display": "Ballesteros Solís FA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "balloux f": {"display": "Balloux F", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32319", "pmid": "32004756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Reads sequenced from a parchment blood stain attributed to the french revolutionary Jean…"}, {"acc": "PRJEB43276", "pmid": "34527890", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Salmonella enterica from a soldier from the 1652-siege of Barcelona (Spain) supports hist…"}]}, "bally jf": {"display": "Bally JF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39870", "pmid": "33646178", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Oral microbial community profiles in Parkinson’s disease"}]}, "balskus ep": {"display": "Balskus EP", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA559861", "pmid": "32544460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cholesterol Metabolism by Uncultured Human Gut Bacteria Influences Host Cholesterol Level."}, {"acc": "PRJNA955235", "pmid": "42262087", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}]}, "baltrunaite l": {"display": "Baltrūnaitė L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA725899", "pmid": "36747007", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of wild rodent colon, cecum and faeces"}]}, "baluyot k": {"display": "Baluyot K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63183", "pmid": "37457984", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Interactions Between Bifidobacterium and Bacteroides and Human Milk Oligosaccharides and…"}]}, "bana z": {"display": "Baña Z", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "banaei n": {"display": "Banaei N", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1236482", "pmid": "42020750", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Short-term clinical evolution of Enterococcus faecium"}, {"acc": "PRJNA787952", "pmid": "35239511", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}]}, "banda l": {"display": "Banda L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "bandala-sanchez e": {"display": "Bandala-Sanchez E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}]}, "bandsma rhj": {"display": "Bandsma RHJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "bandyopadhyay s": {"display": "Bandyopadhyay S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "bane s": {"display": "Bane S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "banerjee a": {"display": "Banerjee A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA674643", "pmid": "35474894", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Validation of Coronavirus and Sepsis Probe Sets designed using HUBDesign"}]}, "banerjee ct": {"display": "Banerjee CT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156457", "pmid": "39731681", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acanthamoeba sequencing"}]}, "banerjee k": {"display": "Banerjee K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA856701", "pmid": "36165604", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin microbiome of forehead in children with and without acne"}]}, "banerjee p": {"display": "Banerjee P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "banerjee r": {"display": "Banerjee R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1502892", "pmid": "40490486", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Associations between antibiotic exposure intensity, intestinal microbiome perturbations,…"}]}, "banfield jf": {"display": "Banfield JF", "group": false, "n_studies": 19, "studies": [{"acc": "PRJEB21259", "pmid": null, "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}, {"acc": "PRJNA215102", "pmid": "24451181", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant gut Metagenome"}, {"acc": "PRJNA221723", "pmid": "24468033", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "29180750", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "29636439", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "31844663", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA278302", "pmid": "26787827", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Alaska oil reservoir Metagenome"}, {"acc": "PRJNA294605", "pmid": "29180750", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "29636439", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "31844663", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA321218", "pmid": "24137540", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA321218", "pmid": "27819664", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA327106", "pmid": "28073918", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA362245", "pmid": "28630471", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Microbiome assembly across multiple body sites in low-birthweight infants"}, {"acc": "PRJNA376566", "pmid": "29180750", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "29636439", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "29925423", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "31844663", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376580", "pmid": "29180750", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hospital (NICU) surfaces and sinks"}, {"acc": "PRJNA376580", "pmid": "30770768", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hospital (NICU) surfaces and sinks"}, {"acc": "PRJNA396794", "pmid": "29359195", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA396794", "pmid": "31844663", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA417343", "pmid": null, "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y5 Cohort)"}, {"acc": "PRJNA60717", "pmid": "21191099", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomic analysis of infant stool sample"}, {"acc": "PRJNA60717", "pmid": "31844663", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analysis of infant stool sample"}, {"acc": "PRJNA61745", "pmid": "21191099", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Strain-resolved community genomic analysis of gut microbial colonization in a premature i…"}, {"acc": "PRJNA698986", "pmid": "34622230", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA698986", "pmid": "37973815", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA698986", "pmid": null, "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA717139", "pmid": "34154658", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitaliz…"}, {"acc": "PRJNA81851", "pmid": "22773627", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Hypersaline Lake Metagenome"}, {"acc": "PRJNA81851", "pmid": "23853523", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Hypersaline Lake Metagenome"}, {"acc": "PRJNA914281", "pmid": null, "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Tandem repeats in giant archaeal Borg elements undergo rapid evolution and create new int…"}]}, "bang c": {"display": "Bang C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB86263", "pmid": "39218875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gender-affirming hormonal therapy induces a gender-concordant fecal metagenome transition…"}, {"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "baniecki ml": {"display": "Baniecki ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "bankamp b": {"display": "Bankamp B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28818890", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "bansah da": {"display": "Bansah DA", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1173239", "pmid": "40763731", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Amino acid competition shapes Acinetobacter baumannii gut carriage"}]}, "banyai k": {"display": "Bányai K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644779", "pmid": "33384459", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "yogurt and kefir seed culture sequencing"}]}, "bao j": {"display": "Bao J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "baouendi m": {"display": "Baouendi M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762668", "pmid": "35547149", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal and comparative analysis of Tunisian newborns gut microbiota according to de…"}]}, "baptista t": {"display": "Baptista T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "baquero f": {"display": "Baquero F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}]}, "bar dz": {"display": "Bar DZ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1187541", "pmid": "39753133", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Raw metagenomics sequencing from human hippocampi."}]}, "bar hy": {"display": "Bar HY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27308", "pmid": "30974084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome metagenome analysis of stool samples from individuals with low and high saliva…"}]}, "bar n": {"display": "Bar N", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJNA524170", "pmid": "31605691", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistant microbiome underlies antibiotic therapy in pouchitis"}]}, "bar-shalom r": {"display": "Bar-Shalom R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA515489", "pmid": "31086829", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genomic collection of symbionts associated with Petrosia ficiformis"}]}, "bar-yoseph h": {"display": "Bar-Yoseph H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA628604", "pmid": "32511695", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}]}, "baragetti a": {"display": "Baragetti A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA615842", "pmid": "33494335", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}]}, "barba-pingaron l": {"display": "Barba-Pingarón L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "barbarossa d": {"display": "Barbarossa D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1168703", "pmid": "38485093", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of an epilepsy-linked gut microbiota signature in a pediatric rat model of…"}]}, "barbas c": {"display": "Barbas C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB3085", "pmid": "23236009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}, {"acc": "PRJNA991269", "pmid": "38589361", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "barber cm": {"display": "Barber CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54991", "pmid": "36211486", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics of infant formula study"}]}, "barber d": {"display": "Barber D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991269", "pmid": "38589361", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "barbera mc": {"display": "Barbera MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1168703", "pmid": "38485093", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of an epilepsy-linked gut microbiota signature in a pediatric rat model of…"}]}, "barbosa-lima g": {"display": "Barbosa-Lima G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "barbour la": {"display": "Barbour LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA845806", "pmid": "35966074", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Trial of Diet in Gestational Diabetes Mellitus: Metabolic Consequences to Mother and Offs…"}]}, "barcellona cm": {"display": "Barcellona CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "barcenilla c": {"display": "Barcenilla C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA997800", "pmid": "38267717", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39407346", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "barch dm": {"display": "Barch DM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA911205", "pmid": "37726348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Psychosocial adversity experienced in utero and early life is associated with variation i…"}]}, "bardosh k": {"display": "Bardosh K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "33553097", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "bardosh kl": {"display": "Bardosh KL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "33829128", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "bargheet a": {"display": "Bargheet A", "group": false, "n_studies": 12, "studies": [{"acc": "PRJEB32631", "pmid": "40048849", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB51728", "pmid": "40048849", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB6456", "pmid": "40048849", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1305341", "pmid": "42013844", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "ProRIDE Deep Seq Metagenomics Raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "40048849", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA352475", "pmid": "40048849", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "40048849", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA473126", "pmid": "40048849", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "40048849", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA549787", "pmid": "40048849", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA595749", "pmid": "40048849", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}, {"acc": "PRJNA898628", "pmid": "37187112", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "PINGU Fecal samples Metagenome"}, {"acc": "PRJNA898628", "pmid": "40048849", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "PINGU Fecal samples Metagenome"}]}, "bargiela r": {"display": "Bargiela R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB3085", "pmid": "23236009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}, {"acc": "PRJNA158313", "pmid": "23251564", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Iberian lynx fecal Metagenome"}]}, "barile d": {"display": "Barile D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA390646", "pmid": "29242832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}]}, "bariletti i": {"display": "Bariletti I", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}]}, "baris s": {"display": "Baris S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "barker-tejeda tc": {"display": "Barker-Tejeda TC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991269", "pmid": "38589361", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "barman d": {"display": "Barman D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945262", "pmid": "37067419", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Gut Microbiome in a mother child paired design"}]}, "barnaba tj": {"display": "Barnaba TJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA336518", "pmid": "29954907", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA336518", "pmid": "29954914", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA336518", "pmid": "35023776", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA336518", "pmid": "35616377", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}]}, "barnes he": {"display": "Barnes HE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA255985", "pmid": "25279840", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human saliva, creek water, and synthetic metagenomic samples used in selective DNA isolat…"}]}, "barnes jr": {"display": "Barnes JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA623215", "pmid": "32349121", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing to evaluate massively multiplexed detection with Cas13"}]}, "barnes k": {"display": "Barnes K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "barnes kg": {"display": "Barnes KG", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}, {"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "barnes s": {"display": "Barnes S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1066815", "pmid": "38963827", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human rhinovirus A, B and C in Washington State"}, {"acc": "PRJNA723895", "pmid": "38963827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Rhinovirus NGS"}]}, "barnett e": {"display": "Barnett E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB10057", "pmid": "26180832", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Variation in the Microbiota of Ixodes ticks with geography, species and sex"}, {"acc": "PRJEB10073", "pmid": "26180832", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Variation in the Microbiota of Ixodes ticks with geography, species and sex illumina"}]}, "baron j": {"display": "Baron J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "barone m": {"display": "Barone M", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA525982", "pmid": "30948795", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transpl…"}, {"acc": "PRJNA877820", "pmid": "32209716", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}, {"acc": "PRJNA914532", "pmid": "36639555", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "Levofloxacin prophylaxis and parenteral nutrition have a detrimental effect on intestinal…"}, {"acc": "PRJNA991320", "pmid": "37794974", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Depression in older adults"}]}, "barquera r": {"display": "Barquera R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "barr t": {"display": "Barr T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA546004", "pmid": "31451108", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Maturation of the infant rhesus macaque (Macaca mulatta) gut microbiome and its role in t…"}]}, "barrack k": {"display": "Barrack K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA955235", "pmid": "39945545", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}]}, "barrack ke": {"display": "Barrack KE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1078280", "pmid": "38405928", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Quantifying forms and functions of intestinal bile acid pools in mice"}, {"acc": "PRJNA955235", "pmid": "42262087", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}]}, "barratt mj": {"display": "Barratt MJ", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB38446", "pmid": "34001614", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiota (16S rDNA sequencing) and microbiome (shotgun sequencing) data of a pig model…"}, {"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}]}, "barreiro lb": {"display": "Barreiro LB", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB29065", "pmid": "37158607", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Daily sampling reveals personalized diet-microbiome associations"}, {"acc": "PRJNA290380", "pmid": "37158607", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "barrett e": {"display": "Barrett E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}]}, "barrett hl": {"display": "Barrett HL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1185841", "pmid": "40232948", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Buccal swab and saliva rinse samples from pregnant women with and without T2DM - Raw sequ…"}]}, "barretto c": {"display": "Barretto C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA506325", "pmid": "23102968", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Phages Raw sequence reads"}]}, "barrey e": {"display": "Barrey E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA438436", "pmid": "31270376", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The gut microbiota influence the basal physiological parameters in equine athletes"}, {"acc": "PRJNA438436", "pmid": "33898524", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The gut microbiota influence the basal physiological parameters in equine athletes"}]}, "barrios m": {"display": "Barrios M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39143045", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}, {"acc": "PRJNA1081952", "pmid": "39367018", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "barroso-sousa r": {"display": "Barroso-Sousa R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1295573", "pmid": "41760690", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The intestinal microbiome of patients with newly diagnosed invasive breast cancer and duc…"}]}, "barrs vr": {"display": "Barrs VR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA841246", "pmid": "35765950", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Feline panleukopenia and healthy control feline faecal samples"}]}, "barry ka": {"display": "Barry KA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA49397", "pmid": "20962874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Canine gastrointestinal metagenome"}]}, "bartelsman jf": {"display": "Bartelsman JF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}]}, "bartenschlager r": {"display": "Bartenschlager R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "bartholomaus a": {"display": "Bartholomäus A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB66721", "pmid": "39384533", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metabolic features explaining the prevalence Bathyarchaeia among microbial communities in…"}, {"acc": "PRJEB98232", "pmid": "41459228", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Cryptic sulfur cycling sustains lithotrophy in the deep biosphere of ferruginous Lake Tow…"}]}, "bartlett jg": {"display": "Bartlett JG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39023", "pmid": "24440222", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Treatment of recurrent Clostridioides difficile infection with Fecal Microbiota Transplan…"}]}, "bartolomaeus h": {"display": "Bartolomaeus H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}, {"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}]}, "bartolomaeus tup": {"display": "Bartolomaeus TUP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}]}, "bartosiewicz m": {"display": "Bartosiewicz M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675607", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Biogeochemistry study on Lake Tanganyika in Tanzania"}]}, "bartsch lj": {"display": "Bartsch LJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "38659981", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "baruch en": {"display": "Baruch EN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "bashir h": {"display": "Bashir H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}]}, "bashir z": {"display": "Bashir Z", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37731", "pmid": "33208514", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "33816334", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "35553675", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "39015337", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "39160615", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "42203854", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB38528", "pmid": "42203854", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}]}, "basile k": {"display": "Basile K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}, {"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "baskaran s": {"display": "Baskaran S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}]}, "bassani dg": {"display": "Bassani DG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "bassi c": {"display": "Bassi C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB67641", "pmid": "38709303", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental Plaque Microbiota Sequence Counts for Microbial Profiling and Resistance Genes Det…"}]}, "bassi i": {"display": "Bassi I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43505", "pmid": "34535959", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut barrier and microbiota changes with glycine and branched chain amino acids supplement…"}]}, "bassis cm": {"display": "Bassis CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "38782975", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB46659", "pmid": "41265504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "bastard jp": {"display": "Bastard JP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}]}, "bastianini m": {"display": "Bastianini M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "bastien p": {"display": "Bastien P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA478488", "pmid": "32591010", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Chinese human skin metagenome"}]}, "bastos-moreira y": {"display": "Bastos-Moreira Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1113165", "pmid": "40102379", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}]}, "basu a": {"display": "Basu A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945262", "pmid": "37067419", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Gut Microbiome in a mother child paired design"}]}, "batachari le": {"display": "Batachari LE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}]}, "batejat c": {"display": "Batéjat C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1004259", "pmid": "38047654", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic and Amplicon-based Nanopore Sequencing of French Human Monkeypox direct from…"}]}, "bateman ac": {"display": "Bateman AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "27974546", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28100494", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28935730", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "batista r": {"display": "Batista R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1121295", "pmid": "38964511", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FEDEX Study Fecal Metagenomes"}]}, "bato e": {"display": "Bató E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA885840", "pmid": "38151716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Superfoods Raw data"}]}, "battin tj": {"display": "Battin TJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA781406", "pmid": "35444202", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Vanishing Glaciers Project"}]}, "battista vm": {"display": "Battista VM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "batto jm": {"display": "Batto JM", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB4413", "pmid": "23985875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary intervention impact on gut microbial gene richness based on SOLiD next generation…"}, {"acc": "PRJEB6314", "pmid": "25496341", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Construction of a dairy microbial genome catalog opens new perspectives for the metagenom…"}, {"acc": "PRJEB7925", "pmid": "25887914", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Quality control of microbiota metagenomics by k-mer analysis with SOLiD sequencing techno…"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "batts wn": {"display": "Batts WN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28870221", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "baud a": {"display": "Baud A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB77434", "pmid": "37271782", "pos": "first", "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Vaginal Microbiota Dynamics in Pregnancy"}]}, "baudot a": {"display": "Baudot A", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1160256", "pmid": "39919360", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": "40941064", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1177813", "pmid": "39796584", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "2FL age specific bifidobacterium effect"}, {"acc": "PRJNA1456031", "pmid": "42353547", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of selected contaminants on the human gut microbiome tested ex vivo"}, {"acc": "PRJNA961974", "pmid": "38236043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The effects of selected plant extracts on the human gut microbiome"}]}, "baudry l": {"display": "Baudry L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "bauer km": {"display": "Bauer KM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA390646", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA633576", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}]}, "baumann kb": {"display": "Baumann KB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675607", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Biogeochemistry study on Lake Tanganyika in Tanzania"}]}, "baumann-dudenhoeffer am": {"display": "Baumann-Dudenhoeffer AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "30374198", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "baunwall smd": {"display": "Baunwall SMD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA812583", "pmid": "36352460", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level metagenomics reveal microbial transfer from donor to infant after fecal micr…"}]}, "bautista g": {"display": "Bautista G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA530252", "pmid": "32631930", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effect of cycled, inhaled tobramycin on the sputum microbiome in cystic fibrosis"}]}, "baveja r": {"display": "Baveja R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417283", "pmid": "29988506", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}]}, "bay sk": {"display": "Bay SK", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1130617", "pmid": "41505541", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA630822", "pmid": "34732568", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA630822", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "baya b": {"display": "Baya B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "bayard nu": {"display": "Bayard NU", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1042647", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}]}, "bazire r": {"display": "Bazire R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991269", "pmid": "38589361", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "bbosa n": {"display": "Bbosa N", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}, {"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "beale ma": {"display": "Beale MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "beaman j": {"display": "Beaman J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "bean j": {"display": "Bean J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445968", "pmid": "30282828", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}]}, "bean jm": {"display": "Bean JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445968", "pmid": "28883399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}]}, "beatson ma": {"display": "Beatson MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46333", "pmid": "22310478", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "beatson sa": {"display": "Beatson SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893826", "pmid": "38622998", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Culture-independent long read metagenomic diagnostics for genomic surveillance and infect…"}]}, "beatty ja": {"display": "Beatty JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA841246", "pmid": "35765950", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Feline panleukopenia and healthy control feline faecal samples"}]}, "beavers wn": {"display": "Beavers WN", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1042647", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}]}, "beblavy r": {"display": "Beblavy R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1290379", "pmid": "41593042", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool"}]}, "becattini s": {"display": "Becattini S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}]}, "becerra je": {"display": "Becerra JE", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "becerra-valdivia l": {"display": "Becerra-Valdivia L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "beck kl": {"display": "Beck KL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA637785", "pmid": "33346848", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA637785", "pmid": "33985595", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA667736", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Milk Metagenome Anomaly Detection Project"}]}, "beck lc": {"display": "Beck LC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB39610", "pmid": "39216480", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB49383", "pmid": "36163498", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm Neonatal Stool Metagenomes"}, {"acc": "PRJEB49383", "pmid": "39183307", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm Neonatal Stool Metagenomes"}]}, "becker ab": {"display": "Becker AB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA838575", "pmid": "37644001", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "becker jb": {"display": "Becker JB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB20527", "pmid": "26627545", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Corticosteroid therapy and airflow obstruction influence the bronchial microbiome, which…"}]}, "becker-dreps s": {"display": "Becker-Dreps S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA853174", "pmid": "35891376", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "beckford a": {"display": "Beckford A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}]}, "bediako-bowan a": {"display": "Bediako-Bowan A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA592050", "pmid": "31738985", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Air genomes from surgical room Raw sequence reads"}]}, "bedwell h": {"display": "Bedwell H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "beghini f": {"display": "Beghini F", "group": false, "n_studies": 34, "studies": [{"acc": "PRJEB10878", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB12449", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Reproducibility of associations between the human gut microbiome and colorectal cancer as…"}, {"acc": "PRJEB15371", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB24041", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Selective maternal seeding and environment shape the human gut microbiome"}, {"acc": "PRJEB32631", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB33500", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Mediterranean diet intervention in overweight and obese subjects leads to multiple benefi…"}, {"acc": "PRJEB35738", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Clostridium difficile infection patient microbiome"}, {"acc": "PRJEB37249", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Statin therapy is associated with lower prevalence of gut microbiota dysbiosis"}, {"acc": "PRJEB38742", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Imidazole propionate is increased in diabetes and associated with dietary patterns and al…"}, {"acc": "PRJEB45799", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB6070", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6456", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6997", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut and Oral Microbiome Dysbiosis in Rheumatoid Arthritis"}, {"acc": "PRJEB7774", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB9584", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "KCL_twins2"}, {"acc": "PRJNA1019702", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA231909", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "30661755", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA398089", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA422434", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}, {"acc": "PRJNA447983", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}, {"acc": "PRJNA48479", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA48479", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA504891", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "32427907", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA564397", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics Reveals Impact of Geography, Antibiotics and Acute Diarrhoeal Disease on the…"}, {"acc": "PRJNA674880", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Microbiota Restoration Reduces Antibiotic Resistant Bacteria Gut Colonization in Patients…"}, {"acc": "PRJNA685168", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Multi-omics suggest diverse mechanisms for response to biologic therapies in IBD"}, {"acc": "PRJNA705895", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA748262", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}, {"acc": "PRJNA752686", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Profile of the Gut Microbiome of Preterm Infants and its Association to Infan…"}, {"acc": "PRJNA999635", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut Microbiome of isolated villages in rural Honduras"}]}, "beglinger c": {"display": "Beglinger C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36461", "pmid": "32360114", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Laparoscopic Roux-en-Y gastric bypass and sleeve gastrectomy on gut microbiota:…"}]}, "begnel er": {"display": "Begnel ER", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1045584", "pmid": "39185682", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of SARS-CoV-2 in stool sample from women living with HIV and HIV-negative women an…"}, {"acc": "PRJNA635738", "pmid": "33727396", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Breast milk Microbiome/Virome of HIV+ Kenyan Women is Not Altered by Immunosuppression"}]}, "behera du": {"display": "Behera DU", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1020650", "pmid": "36676144", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Apical Periodontal sample Metagenomes"}]}, "behnsen j": {"display": "Behnsen J", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1173239", "pmid": "40763731", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Amino acid competition shapes Acinetobacter baumannii gut carriage"}]}, "behr aa": {"display": "Behr AA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1236482", "pmid": "42020750", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Short-term clinical evolution of Enterococcus faecium"}]}, "beidi d": {"display": "Beidi D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "beiersdorfer t": {"display": "Beiersdorfer T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1364313", "pmid": "35794664", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Antibiotic impact on preterm infant microbiome maturation"}]}, "beitzel bf": {"display": "Beitzel BF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA683873", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Severe acute respiratory syndrome coronavirus 2 Genome sequencing"}]}, "bekesi l": {"display": "Békési L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685398", "pmid": "36083885", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Honey bee gut microbiome"}]}, "bekkat n": {"display": "Bekkat N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43454", "pmid": "35151268", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Long-term diosmectite use does not alter the gut microbiota in adults with chronic diarrh…"}]}, "belcastro mg": {"display": "Belcastro MG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "belda e": {"display": "Belda E", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB23292", "pmid": "29899081", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysbiosis, including decreased gut microbial richness (MGR) and composition modifications…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJNA728908", "pmid": "35675435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of baseline individuals in a 4.6-year non-alcoholic fatty liver disease pr…"}]}, "belda-ferre p": {"display": "Belda-Ferre P", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA597371", "pmid": "34193290", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal Selective Pressure and Coevolution Project Part 4 human placebo Metagenome"}, {"acc": "PRJNA602729", "pmid": "34079079", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}]}, "beleem i": {"display": "Beleem I", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB26614", "pmid": "31754151", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Khambhat"}, {"acc": "PRJEB26615", "pmid": "31754151", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Kutch"}]}, "belghith m": {"display": "Belghith M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762668", "pmid": "35547149", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal and comparative analysis of Tunisian newborns gut microbiota according to de…"}]}, "belibasakis gn": {"display": "Belibasakis GN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37731", "pmid": "33816334", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}]}, "belkaid y": {"display": "Belkaid Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA46333", "pmid": "28679656", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "belkova n": {"display": "Belkova N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA604466", "pmid": "32939372", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota of adolescens with obesity"}]}, "bell jt": {"display": "Bell JT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA321218", "pmid": "24137540", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}]}, "bell pb": {"display": "Bell PB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}]}, "beller l": {"display": "Beller L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA344863", "pmid": "27666390", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral Metagenomics of fecal samples of fruit bats"}, {"acc": "PRJNA693793", "pmid": "35320047", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "BaBel Infant Gut Virome Raw Data"}]}, "bellini gb": {"display": "Bellini GB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29861", "pmid": "31550653", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "UNVEILING RESISTOME PROFILES IN THE SEDIMENTS OF AN ANTARCTIC VOLCANIC ISLAND"}]}, "bello im": {"display": "Bello IM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "bellora c": {"display": "Bellora C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA289586", "pmid": "27723761", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}]}, "belluomini l": {"display": "Belluomini L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "belogolovski a": {"display": "Belogolovski A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "belone aff": {"display": "Belone AFF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "belotti t": {"display": "Belotti T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA914532", "pmid": "36639555", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "Levofloxacin prophylaxis and parenteral nutrition have a detrimental effect on intestinal…"}]}, "below je": {"display": "Below JE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA734860", "pmid": "34633706", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA734860", "pmid": "35477306", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}]}, "belser c": {"display": "Belser C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "belson m": {"display": "Belson M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "belstrom d": {"display": "Belstrøm D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396840", "pmid": "28979798", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomic and metatranscriptomic analysis of saliva reveals disease-associated microbio…"}]}, "belteki g": {"display": "Belteki G", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB14935", "pmid": "29096601", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Term and preterm shotgun samples"}, {"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "beltran b": {"display": "Beltrán B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB3206", "pmid": "23760301", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of the viral and microbial metagenomes associated with the Crohn's disease"}]}, "beltrao-braga pcb": {"display": "Beltrão-Braga PCB", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1072081", "pmid": "40237336", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Identifying Biomarkers and Trajectories of Typical Neurodevelopment in Children, the BRAI…"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "belykh oi": {"display": "Belykh OI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA547700", "pmid": "31671744", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lake Baikal Viromes Raw sequence reads"}]}, "belzer c": {"display": "Belzer C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB2778", "pmid": "33538807", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}, {"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}, {"acc": "PRJEB46779", "pmid": "29566738", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Extended-Spectrum Beta Lactamase Carriers."}]}, "bemelman fj": {"display": "Bemelman FJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46779", "pmid": "29566738", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Extended-Spectrum Beta Lactamase Carriers."}]}, "ben-amram h": {"display": "Ben-Amram H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "ben-yacov o": {"display": "Ben-Yacov O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "bender o": {"display": "Bender O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1187541", "pmid": "39753133", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Raw metagenomics sequencing from human hippocampi."}]}, "bendixsen c": {"display": "Bendixsen C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "benes v": {"display": "Benes V", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB12357", "pmid": "27126044", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}, {"acc": "PRJEB46778", "pmid": "27126044", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "bengtsson-palme j": {"display": "Bengtsson-Palme J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1262354", "pmid": "41603547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMBARK - Establishing a Monitoring Baseline for Antimicrobial Resistance in Key environme…"}, {"acc": "PRJNA384716", "pmid": "30250208", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA898628", "pmid": "37187112", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "PINGU Fecal samples Metagenome"}]}, "benitez aj": {"display": "Benitez AJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "39856742", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "39856742", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}]}, "benitez-paez a": {"display": "Benítez-Páez A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB25727", "pmid": "31138673", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The impact of AXOS intake in overweight individuals with metabolic syndrome."}, {"acc": "PRJEB36898", "pmid": "33629506", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics analysis on overweight subjects under a caloric restriction intervention with…"}]}, "benjak a": {"display": "Benjak A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "benjamin-chung j": {"display": "Benjamin-Chung J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "benkahla a": {"display": "Benkahla A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762668", "pmid": "35547149", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal and comparative analysis of Tunisian newborns gut microbiota according to de…"}]}, "bennett c": {"display": "Bennett C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39143045", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}, {"acc": "PRJNA1081952", "pmid": "39367018", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "benno y": {"display": "Benno Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "benoit b": {"display": "Benoit B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "benson sc": {"display": "Benson SC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "bensussan m": {"display": "Bensussan M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "bentley g": {"display": "Bentley G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA215106", "pmid": "24236055", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}]}, "bentley sd": {"display": "Bentley SD", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32631", "pmid": "42032281", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB47909", "pmid": "42032281", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "FMT datasets of patients with recurrent Clostridioides difficile infection (rCDI), inflam…"}]}, "benveniste en": {"display": "Benveniste EN", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB32631", "pmid": "32431894", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA288562", "pmid": "32431894", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}, {"acc": "PRJNA593263", "pmid": "32431894", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Feces metagenome"}]}, "benyamin b": {"display": "Benyamin B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1077459", "pmid": "38883202", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Trio Whole Exome Sequencing of Rare Disease"}]}, "bera-maillet c": {"display": "Béra-Maillet C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48663", "pmid": "35311446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Increasing the diversity of dietary fibres in a daily-consumed bread modifies gut microbi…"}]}, "berard a": {"display": "Bérard A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB50897", "pmid": "40244028", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental pulp"}]}, "beraza n": {"display": "Beraza N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1307628", "pmid": "41461922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbial oral-gut translocation in advanced chronic liver disease is linked to exacerbat…"}]}, "berben t": {"display": "Berben T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1215350", "pmid": "40600797", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "16S rRNA sequences of sediment incubations from a eutrophic marine lake"}]}, "berbers gam": {"display": "Berbers GAM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA555020", "pmid": "36380002", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}]}, "bercovici s": {"display": "Bercovici S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "berdy b": {"display": "Berdy B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}]}, "berendonk tu": {"display": "Berendonk TU", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1262354", "pmid": "41603547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMBARK - Establishing a Monitoring Baseline for Antimicrobial Resistance in Key environme…"}]}, "berendsen em": {"display": "Berendsen EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA715634", "pmid": "34035441", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Novel Strain Level Resolution of Crohns Disease Mucosa-Associated Microbiota via an ex vi…"}]}, "beretta l": {"display": "Beretta L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA734860", "pmid": "32258950", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA734860", "pmid": "34633706", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA734860", "pmid": "35477306", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}]}, "berg de": {"display": "Berg DE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA268964", "pmid": "27172044", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "27172044", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "berg k": {"display": "Berg K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "berg mg": {"display": "Berg MG", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1079728", "pmid": "38655084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Next-generation sequencing survey of acute febrile illness in Senegal (2020-2022)"}, {"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}, {"acc": "PRJNA1188190", "pmid": "37113001", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two…"}, {"acc": "PRJNA1328708", "pmid": "41472057", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}, {"acc": "PRJNA789273", "pmid": "34960803", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Emergence of a Distinct Picobirnavirus Genotype Circulating in Patients Hospitalized with…"}]}, "berge ijmt": {"display": "Berge IJMT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46779", "pmid": "29566738", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Extended-Spectrum Beta Lactamase Carriers."}]}, "berger a": {"display": "Berger A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1112760", "pmid": "39679616", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic signatures of early life brain damage"}]}, "berger b": {"display": "Berger B", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "40328944", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB54707", "pmid": "35990340", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, 2-HMO vs. control formula"}, {"acc": "PRJNA400628", "pmid": "40328944", "pos": null, "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "Escherichia coli Genome sequencing and assembly"}, {"acc": "PRJNA504891", "pmid": "32093762", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA506325", "pmid": "23102968", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Phages Raw sequence reads"}]}, "bergerat a": {"display": "Bergerat A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657818", "pmid": "33377127", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}]}, "bergeron mg": {"display": "Bergeron MG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "bergerson jre": {"display": "Bergerson JRE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}]}, "bergh h": {"display": "Bergh H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893826", "pmid": "38622998", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Culture-independent long read metagenomic diagnostics for genomic surveillance and infect…"}]}, "bergia m": {"display": "Bergia M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB71847", "pmid": "38785596", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Gut and respiratory tract microbiota in children younger than 12 months hospitalised for…"}]}, "berglund g": {"display": "Berglund G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "bergman jjghm": {"display": "Bergman JJGHM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "bergmann l": {"display": "Bergmann L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40662", "pmid": "34675897", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Deep (Meta)genomics and (Meta)transcriptome Analyses of Fungal and Bacteria Consortia Fro…"}]}, "bergmark l": {"display": "Bergmark L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12466", "pmid": "26161690", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Meta-genomic analysis of toilet waste from long distance flights"}]}, "bergsten e": {"display": "Bergsten E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA289586", "pmid": "30747106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}]}, "bergstrom g": {"display": "Bergström G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "berild d": {"display": "Berild D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1009231", "pmid": "39019886", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Born in the twilight of antbiotics"}, {"acc": "PRJNA876384", "pmid": "36620054", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Microbial DNA extraction of high-host content and low biomass samples: optimized protocol…"}]}, "berkane n": {"display": "Berkane N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44108", "pmid": "37065965", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A bone of contention"}]}, "berkell m": {"display": "Berkell M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685914", "pmid": "33854066", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiota-based markers predictive of development of Clostridioides difficile infection"}]}, "berkley ja": {"display": "Berkley JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "berla b": {"display": "Berla B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA549787", "pmid": "31832638", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}]}, "berland m": {"display": "Berland M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}]}, "berman hl": {"display": "Berman HL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1086504", "pmid": "38752784", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gardnerella diversity by metagenomic sequencing in the vaginal microbiome"}]}, "berman lm": {"display": "Berman LM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884688", "pmid": "36778973", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiota and protein source"}]}, "bermejo martinez a": {"display": "Bermejo Martínez A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522699", "pmid": "31427729", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}]}, "bermudez de castro jm": {"display": "Bermúdez de Castro JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9783", "pmid": "26351665", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing Chalcolithic human remains from El Portalón, Spain"}]}, "bernard gr": {"display": "Bernard GR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA899808", "pmid": "36543914", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Role of the gut microbiome in lung fibrosis"}]}, "bernardo p": {"display": "Bernardo P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA484151", "pmid": "31379808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural and Urban infant''s fecal microbiota study"}]}, "bernasconi s": {"display": "Bernasconi S", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA273761", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}]}, "berndt a": {"display": "Berndt A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA987743", "pmid": "38163076", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Ruminal and Fecal Microbiomes of Brazilian Nelore Cattle"}]}, "bernhard a": {"display": "Bernhard A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64334", "pmid": "38294254", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Multi-omics of host-gut microbiota interactions in healthy and parasitized farmed Atlanti…"}]}, "bernheim a": {"display": "Bernheim A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45090", "pmid": "39665373", "pos": null, "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "ED Gut"}]}, "bernstein cn": {"display": "Bernstein CN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "bernstein n": {"display": "Bernstein N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "bernstein rm": {"display": "Bernstein RM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15633", "pmid": "28079170", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}]}, "berra l": {"display": "Berra L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "berreira ibraim s": {"display": "Berreira Ibraim S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}]}, "berrington je": {"display": "Berrington JE", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB39610", "pmid": "39216480", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB49383", "pmid": "36163498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm Neonatal Stool Metagenomes"}, {"acc": "PRJEB49383", "pmid": "39183307", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm Neonatal Stool Metagenomes"}, {"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "berry d": {"display": "Berry D", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}, {"acc": "PRJNA1033532", "pmid": "38014294", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Evaluating the impact of pharmaceuticals on the human gut microbiome Raw sequence reads"}, {"acc": "PRJNA1112760", "pmid": "39679616", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic signatures of early life brain damage"}]}, "berry im": {"display": "Berry IM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA683873", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Severe acute respiratory syndrome coronavirus 2 Genome sequencing"}]}, "berson e": {"display": "Berson E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "berta j": {"display": "Berta J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA626477", "pmid": "34002024", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut microbiota Raw sequence reads with and without cancer cachexia"}]}, "bertalan m": {"display": "Bertalan M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}]}, "berthe f": {"display": "Berthé F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA739008", "pmid": "37866373", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Effect of amoxicillin prophylaxis on gut microbiome and resistome for severe acute malnut…"}]}, "bertoli mt": {"display": "Bertoli MT", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA268964", "pmid": "27172044", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "27172044", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "bertolo a": {"display": "Bertolo A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1139160", "pmid": "40229352", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uro-Vaxom Pilot"}]}, "bertorelli r": {"display": "Bertorelli R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "berube e": {"display": "Bérubé È", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "bervoets l": {"display": "Bervoets L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB89491", "pmid": "42057198", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LucKi Gut - Longitudinal metagenomic sequencing of infant gut microbiota"}]}, "berzins v": {"display": "Bērziņš V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42185", "pmid": "34192537", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}]}, "beshah e": {"display": "Beshah E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1406675", "pmid": "41901112", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "GEO accession GSE317287 is currently private and is scheduled to be released on Jul 01, 2…"}]}, "besirlioglu v": {"display": "Besirlioglu V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA240141", "pmid": "36284144", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "bessarab i": {"display": "Bessarab I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "best k": {"display": "Best K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961698", "pmid": "37610205", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Very Early Life Microbiome and Metabolome Correlates with Primary Vaccination Variability…"}]}, "betel d": {"display": "Betel D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA297869", "pmid": "26614063", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human gastric microbiome metagenome"}]}, "betley jr": {"display": "Betley JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1775", "pmid": "23571589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diagnostic Metagenomics: A Culture-Independent Approach to the Investigation of Bacterial…"}]}, "betts rj": {"display": "Betts RJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA478488", "pmid": "32591010", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Chinese human skin metagenome"}]}, "beurdelay p": {"display": "Beurdelay P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1011899", "pmid": "40155393", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Collaborative spiking study 2B for high throughput sequencing for virus detection"}]}, "beuthien-baumann b": {"display": "Beuthien-Baumann B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "beutler m": {"display": "Beutler M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}]}, "bexkens e": {"display": "Bexkens E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA599270", "pmid": "32179689", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Honey bee gut virome"}]}, "beyer k": {"display": "Beyer K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "beyhan s": {"display": "Beyhan S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA475137", "pmid": "33245689", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhizopus oryzae Genome sequencing and assembly"}]}, "beyi af": {"display": "Beyi AF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA704056", "pmid": "33672258", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Tracking reservoirs of antimicrobial resistance genes in microbiota using metagenomic Hi-C"}]}, "bhagat s": {"display": "Bhagat S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1463324", "pmid": "41342324", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "VE202 phase 1 stool metagenomes"}]}, "bhamidipati sv": {"display": "Bhamidipati SV", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": "first", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "bhan p": {"display": "Bhan P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA704313", "pmid": "34835435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating sepsis with culture-Independent mNGS"}]}, "bhandari d": {"display": "Bhandari D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49206", "pmid": "30439937", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}]}, "bhandari y": {"display": "Bhandari Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "bhardwaj a": {"display": "Bhardwaj A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA376580", "pmid": "28232747", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hospital (NICU) surfaces and sinks"}]}, "bhatt as": {"display": "Bhatt AS", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1236482", "pmid": "42020750", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Short-term clinical evolution of Enterococcus faecium"}, {"acc": "PRJNA174084", "pmid": "23924002", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}, {"acc": "PRJNA508395", "pmid": "32042169", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Nanopore long read assembly of the human gut metagenome"}, {"acc": "PRJNA787952", "pmid": "35239511", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}]}, "bhattacharya c": {"display": "Bhattacharya C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945262", "pmid": "37067419", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Gut Microbiome in a mother child paired design"}]}, "bhattacharya n": {"display": "Bhattacharya N", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA273761", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA376566", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA396794", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA60717", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analysis of infant stool sample"}]}, "bhattacharyya a": {"display": "Bhattacharyya A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA679286", "pmid": "34320399", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Global genome analyses reveal a vast and dynamic anellovirus landscape within the human v…"}]}, "bhattacharyya c": {"display": "Bhattacharyya C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945262", "pmid": "37067419", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Gut Microbiome in a mother child paired design"}]}, "bhattarai sk": {"display": "Bhattarai SK", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1071720", "pmid": "38572716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FECBUD Study Fecal Metagenomes"}, {"acc": "PRJNA1121316", "pmid": "39747680", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}, {"acc": "PRJNA445968", "pmid": "30282828", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "bhatti p": {"display": "Bhatti P", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB6456", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA475246", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA486782", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA510445", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA630999", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}]}, "bhosle a": {"display": "Bhosle A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA398089", "pmid": "35614211", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "bhuiyan msa": {"display": "Bhuiyan MSA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39367018", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "bi x": {"display": "Bi X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "bi y": {"display": "Bi Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB14607", "pmid": "25721383", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "By taking three metagenomic approaches to reveal the microplankton communities from compo…"}, {"acc": "PRJNA741606", "pmid": "38254181", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Rumen content metagenome of goat kids"}]}, "biagi e": {"display": "Biagi E", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA278393", "pmid": "27462302", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA525982", "pmid": "30948795", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transpl…"}, {"acc": "PRJNA877820", "pmid": "32209716", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "biagtan m": {"display": "Biagtan M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}]}, "bian x": {"display": "Bian X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB29433", "pmid": "39510074", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nanopore-based metagenomic sequencing analysis of control subjects and patients with AD.…"}]}, "bianchi m": {"display": "Bianchi M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975734", "pmid": "37728335", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Disentangling the interactions between nasopharyngeal and gut microbiome and their involv…"}]}, "bianchi mg": {"display": "Bianchi MG", "group": false, "n_studies": 129, "studies": [{"acc": "PRJDB4176", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB12669", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB15257", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB17784", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The fecal microbiota in L-DOPA naive PD patients"}, {"acc": "PRJEB1786", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB21528", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB23662", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A novel affordable reagent for room temperature storage and transport of fecal samples fo…"}, {"acc": "PRJEB24006", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24557", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Alterations of the intestinal microbiome in patients with retinal artery occlusion"}, {"acc": "PRJEB24771", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB25514", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A cross-sectional study of compositional and functional profiles of gut microbiota in Sar…"}, {"acc": "PRJEB28338", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Influence of travel on the gut microbiome of cricketers"}, {"acc": "PRJEB29052", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB30924", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Comparative analysis of amplicon and metagenomic sequencing methods reveals key features…"}, {"acc": "PRJEB32135", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB33013", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB35615", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Associations between the intestinal microbiome and the complement system in age-related m…"}, {"acc": "PRJEB36820", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB39610", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39813", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenomic study of the oral (saliva) and Gut (stool) microbiome in subjects with Croh…"}, {"acc": "PRJEB41463", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB42363", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB44737", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB6092", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "metagenome fecal microbiota, Ilumina seq reads of 12 individuals at 2 timepoints"}, {"acc": "PRJEB6456", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB8347", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJEB9576", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA215106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA221723", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA272371", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA287207", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA319574", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA321218", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA321218", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA322188", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA324129", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human fecal microbiome before and after consumption of AH1206 - Raw sequence reads"}, {"acc": "PRJNA324672", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA327106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA331138", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of Italian metagenome"}, {"acc": "PRJNA336518", "pmid": "36123315", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA339012", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics analysis of donor and recepient samples from fecal transplant for Recurrent…"}, {"acc": "PRJNA339914", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA340216", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota and metagenomic diversity of omnivore, vegetarian and vegan healthy subjec…"}, {"acc": "PRJNA345144", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA360177", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA362284", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA371647", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Raw sequence reads"}, {"acc": "PRJNA373879", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Healthy human fecal metagenomes variably reactivate Irinotecan active metabolite"}, {"acc": "PRJNA379120", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379741", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "MECFS metagenomics"}, {"acc": "PRJNA382011", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics-Guided Pathogen Discovery in Travelers' Diarrhea"}, {"acc": "PRJNA384716", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA389927", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Viral and Bacterial Communities of Colorectal Cancer"}, {"acc": "PRJNA397219", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA412411", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA414479", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Total lipopolysaccharide from the human gut microbiome silences toll-like receptor signal…"}, {"acc": "PRJNA418941", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota functionality of healthy controls and individuals with kidney stones"}, {"acc": "PRJNA421881", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA422434", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422569", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA428202", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "healthy human gut metagenomics"}, {"acc": "PRJNA431482", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA436562", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA449784", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA482729", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of native and acetylated high amylose maize starch on fecal pH, short chain fatty…"}, {"acc": "PRJNA485056", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA486782", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486795", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Modification of gut microbiota-bile acid-intestinal FXR signaling leads to the clinical b…"}, {"acc": "PRJNA487305", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Effects of non-nutritive sweeteners on the composition of the human gut microbiome"}, {"acc": "PRJNA489693", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA492716", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA497734", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA499081", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}, {"acc": "PRJNA503909", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA509512", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiota changes are associated with acquisition of antibiotic resistant genes among in…"}, {"acc": "PRJNA518912", "pmid": "36123315", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA521587", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA524703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA529124", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA532538", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome of the gut microbiota in multiple system atrophy patients"}, {"acc": "PRJNA542703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA547717", "pmid": "36123315", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "human oral metagenome Raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA555020", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA557731", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA562766", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA597839", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota, visceral fat and sleeve gastrectomy"}, {"acc": "PRJNA613834", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Functional Microbial Responses to Alcohol Abstinence in Patients with Alcohol Use Disorder"}, {"acc": "PRJNA615162", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615842", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}, {"acc": "PRJNA626004", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics Fecal Microbiome Dysbiosis in Parkinsons Disease"}, {"acc": "PRJNA628604", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}, {"acc": "PRJNA630999", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA633576", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA637175", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}, {"acc": "PRJNA637878", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA637878", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA644725", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA648487", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA649316", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Hi-C and metagenomic sequencing of neutropenic patient microbiomes"}, {"acc": "PRJNA663646", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "External validation cohorts for CRC-SNP analysis"}, {"acc": "PRJNA664544", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut microbes Metagenome"}, {"acc": "PRJNA665061", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665854", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS of feces and saliva of pancreatic cancer patients"}, {"acc": "PRJNA678426", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes."}, {"acc": "PRJNA678454", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of stool samples from two South African cohorts"}, {"acc": "PRJNA679346", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA685797", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The Influence of the gut microbiome on BCG-induced trained immunity"}, {"acc": "PRJNA686265", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-mediated metabolism effects on immunity in rural and urban African populat…"}, {"acc": "PRJNA692830", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole genome metagenomic analysis of the gut microbiome in HIV-1 infected individuals on…"}, {"acc": "PRJNA695570", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA698986", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA705895", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA714678", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA730640", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA742740", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiota of Kidney Stone patients and live-in partners"}, {"acc": "PRJNA750475", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Longitudinal Analysis of Gut Microbiome among healthy women"}, {"acc": "PRJNA762543", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA763503", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Character of microbial engraftment following the fecal microbiota transplantation in pati…"}, {"acc": "PRJNA772518", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA845806", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Trial of Diet in Gestational Diabetes Mellitus: Metabolic Consequences to Mother and Offs…"}]}, "bianco ra": {"display": "Bianco RA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "biashad sa": {"display": "Biashad SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "bibiloni r": {"display": "Bibiloni R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA506325", "pmid": "23102968", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Phages Raw sequence reads"}]}, "bichiou h": {"display": "Bichiou H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762668", "pmid": "35547149", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal and comparative analysis of Tunisian newborns gut microbiota according to de…"}]}, "bicknese e": {"display": "Bicknese E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA495079", "pmid": "31097029", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "New circovirus infecting phyton liver"}]}, "biedermann sv": {"display": "Biedermann SV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB86263", "pmid": "39218875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gender-affirming hormonal therapy induces a gender-concordant fecal metagenome transition…"}]}, "bielawski jp": {"display": "Bielawski JP", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB29237", "pmid": "35967843", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}, {"acc": "PRJEB29237", "pmid": "36909730", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}, {"acc": "PRJEB41463", "pmid": "35967843", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB41463", "pmid": "36909730", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB59728", "pmid": "36909730", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "This study examined pediatric patients undergoing treatment for various cancers and exami…"}]}, "bielecka a": {"display": "Bielecka A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA947377", "pmid": "38366600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Establishment of a non-Westernized gut microbiota in men who have sex with men is associa…"}]}, "bielecka aa": {"display": "Bielecka AA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}, {"acc": "PRJNA1115039", "pmid": "39673707", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary selective effects manifest in the human gut microbiota from species composition t…"}]}, "bigg m": {"display": "Bigg M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA297869", "pmid": "26614063", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human gastric microbiome metagenome"}]}, "biggs ba": {"display": "Biggs BA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}, {"acc": "PRJNA1081952", "pmid": "39143045", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}, {"acc": "PRJNA1081952", "pmid": "39367018", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "bik em": {"display": "Bik EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA362245", "pmid": "24169577", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Microbiome assembly across multiple body sites in low-birthweight infants"}]}, "bikovsky r": {"display": "Bikovsky R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "bilalov f": {"display": "Bilalov F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1061168", "pmid": "38440790", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Excess fermentation and lactic acidosis as detrimental functions of the gut microbes in t…"}]}, "bilbao i": {"display": "Bilbao I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1146994", "pmid": "38556088", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Personal traits, lifestyle decisions, and geography shape our dietary intake and conseque…"}]}, "bilbao j": {"display": "Bilbao J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "bilige m": {"display": "Bilige M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA810575", "pmid": "36419187", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes of maternal and infant faecal samples"}]}, "billon-crossouard s": {"display": "Billon-Crossouard S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1104421", "pmid": "39078043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Serum Bile Acids profiles are altered without change of the Gut Microbiota composition fo…"}]}, "bimali nk": {"display": "Bimali NK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29668933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "bindl l": {"display": "Bindl L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA379120", "pmid": "30504906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}]}, "binetti ag": {"display": "Binetti AG", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "bingham ma": {"display": "Bingham MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}]}, "bingol a": {"display": "Bingol A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "binia a": {"display": "Binia A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB42539", "pmid": "34756056", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "FUT2/FUT3 genes sequences and nasopharyngeal shotgun metagenomics from the Microbiota and…"}, {"acc": "PRJNA806984", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}]}, "binod g": {"display": "Binod G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019500", "pmid": "39054413", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}]}, "birbrayer o": {"display": "Birbrayer O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA787952", "pmid": "35239511", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}]}, "birch jm": {"display": "Birch JM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA679730", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2018"}, {"acc": "PRJNA702522", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2019"}]}, "bird k": {"display": "Bird K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "birkeland ki": {"display": "Birkeland KI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}, {"acc": "PRJEB59861", "pmid": "31678062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "birkner t": {"display": "Birkner T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "birzniece l": {"display": "Birzniece L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62817", "pmid": "38868903", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome encoded purine and amino acid pathways present prospective biomarkers for…"}]}, "bisanz je": {"display": "Bisanz JE", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}, {"acc": "PRJNA412411", "pmid": "34163067", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "bisgaard h": {"display": "Bisgaard H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB46943", "pmid": "35181661", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40396485", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA715601", "pmid": "38730321", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}]}, "bishai wr": {"display": "Bishai WR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "bishop j": {"display": "Bishop J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA986135", "pmid": "37469596", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "UTI microbiome"}]}, "bittinger k": {"display": "Bittinger K", "group": false, "n_studies": 10, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1042647", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1042647", "pmid": "39856742", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1088536", "pmid": "39030654", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of dietary zinc on the gut microbiome and resistome of the gestating cow and neon…"}, {"acc": "PRJNA1106565", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1106565", "pmid": "39856742", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1209098", "pmid": "40597335", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "The effect of dietary zinc on the microbiome and resistome of the gestating sow and neona…"}, {"acc": "PRJNA451186", "pmid": "30376898", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Placenta Microbiome"}, {"acc": "PRJNA557731", "pmid": "32284564", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA872399", "pmid": "36474348", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}, {"acc": "PRJNA893635", "pmid": "36361763", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}, {"acc": "PRJNA893635", "pmid": "37297350", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}, {"acc": "PRJNA930375", "pmid": "37264481", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Addition of cariogenic pathogens to complex oral microbiota drives significant changes in…"}]}, "bitz-thorsen j": {"display": "Bitz-Thorsen J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "bize a": {"display": "Bize A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46489", "pmid": "35848130", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In situ characterization of the genomic content of viruses of methanogenic archaea in ana…"}]}, "bjerrum s": {"display": "Bjerrum S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA592050", "pmid": "31738985", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Air genomes from surgical room Raw sequence reads"}]}, "bjorck i": {"display": "Björck I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB127029", "pmid": "26552345", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abun…"}]}, "bjork jr": {"display": "Bjork JR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB29065", "pmid": "37158607", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Daily sampling reveals personalized diet-microbiome associations"}, {"acc": "PRJNA290380", "pmid": "37158607", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "blaak ee": {"display": "Blaak EE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB26795", "pmid": "30609941", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "black sr": {"display": "Black SR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}]}, "blackledge m": {"display": "Blackledge M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA530252", "pmid": "32631930", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effect of cycled, inhaled tobramycin on the sputum microbiome in cystic fibrosis"}]}, "blackstad m": {"display": "Blackstad M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019702", "pmid": "39043677", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}]}, "blainey pc": {"display": "Blainey PC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA623215", "pmid": "32349121", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing to evaluate massively multiplexed detection with Cas13"}]}, "blair em": {"display": "Blair EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1023249", "pmid": "38881311", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "cultivated microbial species from anaerobic digester sludge and goat feces"}]}, "blair l": {"display": "Blair L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "blair pj": {"display": "Blair PJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA80601", "pmid": "23554892", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterization of the nasopharyngeal virome in patients with influenza-like illness of…"}]}, "blake ks": {"display": "Blake KS", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA698223", "pmid": "36470885", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "TD Cusco travelers study"}, {"acc": "PRJNA945408", "pmid": "38085102", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prev…"}]}, "blake sj": {"display": "Blake SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "blake t": {"display": "Blake T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA385126", "pmid": "29761040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA48479", "pmid": "29761040", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "blanca piazuelo m": {"display": "Blanca Piazuelo M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA899808", "pmid": "36543914", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Role of the gut microbiome in lung fibrosis"}]}, "blancas-vazquez j": {"display": "Blancas-Vázquez J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "blanchard p": {"display": "Blanchard P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "blanco-miguez a": {"display": "Blanco-Míguez A", "group": false, "n_studies": 14, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB63351", "pmid": "38104504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neuroblastoma is associated with alterations in gut microbiome composition subsequent to…"}, {"acc": "PRJEB6456", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA643802", "pmid": "32859933", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "FMT for diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal…"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA947377", "pmid": "38366600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Establishment of a non-Westernized gut microbiota in men who have sex with men is associa…"}, {"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "blanco-navarrete p": {"display": "Blanco-Navarrete P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819232", "pmid": "35618952", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Integrase Inhibitors on gut and oral microbiome"}]}, "blanco-picazo p": {"display": "Blanco-Picazo P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA590575", "pmid": "32317653", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Bacteriophages in human samples"}]}, "blank rb": {"display": "Blank RB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1420872", "pmid": "41027803", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of gut/stool samples Metagenome"}]}, "blanquart f": {"display": "Blanquart F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45090", "pmid": "39665373", "pos": null, "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "ED Gut"}]}, "blanquet-diot s": {"display": "Blanquet-Diot S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52431", "pmid": "36971547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In Vitro Modelling of Oral Microbial Invasion in the Human Colon"}]}, "blanton lv": {"display": "Blanton LV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9818", "pmid": "26351661", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The gut DNA viromes of Malawian twins discordant for severe acute undernutrition"}]}, "blasche s": {"display": "Blasche S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}]}, "blaser mj": {"display": "Blaser MJ", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}, {"acc": "PRJNA1275869", "pmid": "41620544", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Sequencing of stool samples from Ethiopian children from Adama (Ethiopia)"}, {"acc": "PRJNA1345963", "pmid": "41620544", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Sequencing of stool samples from Ethiopian children from Adama (Ethiopia)"}, {"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}, {"acc": "PRJNA504891", "pmid": "41620544", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA716780", "pmid": "41620544", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "blaustein ra": {"display": "Blaustein RA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1062331", "pmid": "38242477", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Pond microbiome spatiotemporal variation"}]}, "blauwkamp ta": {"display": "Blauwkamp TA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "blekhman r": {"display": "Blekhman R", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB29065", "pmid": "37158607", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Daily sampling reveals personalized diet-microbiome associations"}, {"acc": "PRJNA1019702", "pmid": "39043677", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "39265573", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "41274878", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1198101", "pmid": "41274878", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic re-sequencing of human milk"}, {"acc": "PRJNA290380", "pmid": "37158607", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "bleskina m": {"display": "Bleskina M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "bligh mw": {"display": "Bligh MW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14718", "pmid": "28667104", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Study of the changes in the metagenome of the groundwater community at Little Forest Lega…"}, {"acc": "PRJEB14718", "pmid": "34737728", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Study of the changes in the metagenome of the groundwater community at Little Forest Lega…"}, {"acc": "PRJEB14718", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Study of the changes in the metagenome of the groundwater community at Little Forest Lega…"}]}, "bliskovsky v": {"display": "Bliskovsky V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "bloemen b": {"display": "Bloemen B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1031997", "pmid": "38659981", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}, {"acc": "PRJNA954551", "pmid": "37537550", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Nanopore sequencing of HMW-DNA to compare DNA extraction methods for metagenomics"}]}, "bloks vw": {"display": "Bloks VW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}]}, "blom n": {"display": "Blom N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}]}, "blombach f": {"display": "Blombach F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA240141", "pmid": "36284144", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "blomberg a": {"display": "Blomberg A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "blomberg b": {"display": "Blomberg B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1305341", "pmid": "42013844", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "ProRIDE Deep Seq Metagenomics Raw sequence reads"}]}, "blond e": {"display": "Blond E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "bloomfield fh": {"display": "Bloomfield FH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA648487", "pmid": "33732655", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}]}, "bloomfield sj": {"display": "Bloomfield SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21259", "pmid": "41144256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}]}, "blosser eg": {"display": "Blosser EG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542320", "pmid": "31700190", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacteria Genome sequencing and assembly"}]}, "blottiere hm": {"display": "Blottière HM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}, {"acc": "PRJEB60621", "pmid": "37989857", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Is the oral microbiota implicated in taste perception? Investigation of saliva and tongue…"}]}, "blum se": {"display": "Blum SE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA598014", "pmid": "34454634", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Broiler Chicken Cloacal and Litter Meta-genomic Samples"}]}, "blumenberg v": {"display": "Blumenberg V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "bo gh": {"display": "Bø GH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1305341", "pmid": "42013844", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "ProRIDE Deep Seq Metagenomics Raw sequence reads"}]}, "boardman l": {"display": "Boardman L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA312222", "pmid": "27303377", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genome reconstructions from human gut metagenomes"}, {"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "boberska j": {"display": "Boberska J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB25727", "pmid": "31138673", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The impact of AXOS intake in overweight individuals with metabolic syndrome."}]}, "bobilev d": {"display": "Bobilev D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1121316", "pmid": "37060545", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}, {"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "bobokalonov j": {"display": "Bobokalonov J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893635", "pmid": "36361763", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}]}, "bobokalonov jt": {"display": "Bobokalonov JT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893635", "pmid": "37297350", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}]}, "bocchio f": {"display": "Bocchio F", "group": false, "n_studies": 72, "studies": [{"acc": "PRJEB10878", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB1220", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB26795", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB27005", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27928", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB29052", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29127", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB30834", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB33098", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB38528", "pmid": "38441032", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB39610", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB41102", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB46788", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB6070", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB7774", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJNA1046438", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA268964", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA289586", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA290380", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA307231", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA327106", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA345144", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA360177", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA379120", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA380118", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA386422", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA392180", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA397112", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA400072", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA401385", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA422434", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA431482", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA438847", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA445968", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA449784", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA503909", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA521587", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA527208", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA529124", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA531203", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA542703", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA547591", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA549787", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA553191", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA562600", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Multi-omic analysis of Clostridioides difficile infection and response to therapy in pedi…"}, {"acc": "PRJNA588513", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA624223", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624763", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA633576", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA644725", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA658422", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "gut microbiome shifts associated with Henoch-Schonlein purpura"}, {"acc": "PRJNA679346", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA687536", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA688164", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688274", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA695570", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA714678", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA752006", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing to Examine the Gut Microbiome in Konzo"}, {"acc": "PRJNA772518", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}]}, "bocek m": {"display": "Bocek M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA605028", "pmid": "32690954", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Genome sequencing and assembly"}]}, "bochaton-piallat ml": {"display": "Bochaton-Piallat ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36797", "pmid": "32711187", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The GLP-1R agonist liraglutide limits hepatic lipotoxicity and inflammatory response in m…"}]}, "bockmann m": {"display": "Bockmann M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA383868", "pmid": "28910633", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "30482830", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "32409670", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}]}, "boday a": {"display": "Bóday Á", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA885840", "pmid": "38151716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Superfoods Raw data"}]}, "boday p": {"display": "Bóday P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA885840", "pmid": "38151716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Superfoods Raw data"}]}, "bodduluri sr": {"display": "Bodduluri SR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA899808", "pmid": "36543914", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Role of the gut microbiome in lung fibrosis"}]}, "bode l": {"display": "Bode L", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB39610", "pmid": "39216480", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB52147", "pmid": "35440708", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Association Between Milk Feedings in the Preterm Population, the Microbiome and Risk…"}, {"acc": "PRJEB74322", "pmid": "38870906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJNA1019702", "pmid": "39265573", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1086674", "pmid": "39138352", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Impact of Oral Feedings on the Preterm Infant Microbiome and Metabolome"}, {"acc": "PRJNA400259", "pmid": "33328537", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human Milk Microbiome Metagenome"}]}, "boeck s": {"display": "Boeck S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "boeckh m": {"display": "Boeckh M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA338014", "pmid": "28838146", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29554870", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA907865", "pmid": "37486790", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhinovirus raw sequence reads"}]}, "boehm ck": {"display": "Boehm CK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA623215", "pmid": "32349121", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing to evaluate massively multiplexed detection with Cas13"}]}, "boehme m": {"display": "Boehme M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44042", "pmid": "34252569", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Kefir ameliorates specific microbiota-gut-brain axis impairments in a mouse model relevan…"}]}, "boettcher t": {"display": "Boettcher T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1033532", "pmid": "38014294", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Evaluating the impact of pharmaceuticals on the human gut microbiome Raw sequence reads"}]}, "bogaert d": {"display": "Bogaert D", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA555020", "pmid": "31676793", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "35173154", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "36380002", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA613032", "pmid": "35173154", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life and effects of early life antibiotics, annotated shotgun s…"}, {"acc": "PRJNA613054", "pmid": "35173154", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal resistome in early life and effects of early life antibiotics, annotated shotgun se…"}]}, "bogdanova a": {"display": "Bogdanova A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1061168", "pmid": "38440790", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Excess fermentation and lactic acidosis as detrimental functions of the gut microbes in t…"}]}, "bogovic matijasic b": {"display": "Bogovič Matijašić B", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA203137", "pmid": "25059871", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Lactobacillus paragasseri K7 strain:K7 Genome sequencing and assembly"}, {"acc": "PRJNA339914", "pmid": "36170451", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA343144", "pmid": "36170451", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome Metagenomic assembly"}, {"acc": "PRJNA400259", "pmid": "36170451", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human Milk Microbiome Metagenome"}, {"acc": "PRJNA524170", "pmid": "36170451", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Resistant microbiome underlies antibiotic therapy in pouchitis"}]}, "bohannon l": {"display": "Bohannon L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "boiditswe s": {"display": "Boiditswe S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "boissinot m": {"display": "Boissinot M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "boix-amoros a": {"display": "Boix-Amorós A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1227883", "pmid": "31053102", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}]}, "bokemeyer c": {"display": "Bokemeyer C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "bokulich na": {"display": "Bokulich NA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB79382", "pmid": "39932403", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Stool microbiota stability"}, {"acc": "PRJEB79382", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Stool microbiota stability"}]}, "boland bs": {"display": "Boland BS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}]}, "boldsen j": {"display": "Boldsen J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB66169", "pmid": "41540446", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient DNA study provides clues to leprosy susceptibility in medieval Europe"}]}, "boldsen jl": {"display": "Boldsen JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "bolduc b": {"display": "Bolduc B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA552463", "pmid": "32841606", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "IBD virome Raw sequence reads"}]}, "boleij a": {"display": "Boleij A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87602", "pmid": "37243505", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteria in colitis associated cancer development"}]}, "bolender l": {"display": "Bolender L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1458854", "pmid": "42370707", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Validation of an Integrated Metagenomic Pipeline Combining Optimized Wet Lab Processing a…"}]}, "bolzan m": {"display": "Bolzan M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "32427907", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "bomberger jm": {"display": "Bomberger JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081394", "pmid": "38564694", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sinus, throat, and sputum airway microbiology in cystic fibrosis"}]}, "bon c": {"display": "Bon C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB32319", "pmid": "32004756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Reads sequenced from a parchment blood stain attributed to the french revolutionary Jean…"}]}, "bonazzi m": {"display": "Bonazzi M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "bonczarowska jh": {"display": "Bonczarowska JH", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB36413", "pmid": "32884081", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Yersinia pestis strains from Latvia show depletion of the pla virulence gene at the end o…"}, {"acc": "PRJEB49648", "pmid": "39155318", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Neolithic Yersinia pestis infections in humans and a dog"}]}, "bonde i": {"display": "Bonde I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}]}, "bondra k": {"display": "Bondra K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA484151", "pmid": "31379808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural and Urban infant''s fecal microbiota study"}]}, "bongers rs": {"display": "Bongers RS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB2778", "pmid": "33538807", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}]}, "bongono sa": {"display": "Bongono SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "bonham k": {"display": "Bonham K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "bonham ks": {"display": "Bonham KS", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1072081", "pmid": "40237336", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Identifying Biomarkers and Trajectories of Typical Neurodevelopment in Children, the BRAI…"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "40586263", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "42311381", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA296814", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA695570", "pmid": "34335499", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "34442687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "34444993", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "bonifaz a": {"display": "Bonifaz A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "bonilla-rosso g": {"display": "Bonilla-Rosso G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA599270", "pmid": "32179689", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Honey bee gut virome"}]}, "bonneau r": {"display": "Bonneau R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "bonnelykke k": {"display": "Bønnelykke K", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40396485", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "41387423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA715601", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA916259", "pmid": "40140473", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}]}, "bonner k": {"display": "Bonner K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1080233", "pmid": "39214237", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Breathing Together severe wheeze and asthma cohort"}]}, "bonnet m": {"display": "Bonnet M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1262354", "pmid": "41603547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMBARK - Establishing a Monitoring Baseline for Antimicrobial Resistance in Key environme…"}]}, "bonny c": {"display": "Bonny C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36461", "pmid": "32360114", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Laparoscopic Roux-en-Y gastric bypass and sleeve gastrectomy on gut microbiota:…"}]}, "bonten m": {"display": "Bonten M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35816", "pmid": "32585945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota of carriers of extended-spectrum beta-lactamase or carbapenemase-producing…"}]}, "bonten mjm": {"display": "Bonten MJM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685914", "pmid": "33854066", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiota-based markers predictive of development of Clostridioides difficile infection"}]}, "boolchandani m": {"display": "Boolchandani M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA688274", "pmid": "34092249", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA698223", "pmid": "36470885", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "TD Cusco travelers study"}]}, "boom ja": {"display": "Boom JA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}, {"acc": "PRJNA1195144", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "boomsma di": {"display": "Boomsma DI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24041", "pmid": "29496731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Selective maternal seeding and environment shape the human gut microbiome"}]}, "boone b": {"display": "Boone B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "booth bw": {"display": "Booth BW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA607328", "pmid": "32381611", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Whole-genome sequencing of bacteria, fungi, plants, and metagenomes"}]}, "booth jg": {"display": "Booth JG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27308", "pmid": "30974084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome metagenome analysis of stool samples from individuals with low and high saliva…"}]}, "borchert ms": {"display": "Borchert MS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA240141", "pmid": "25208077", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "bordenstein sr": {"display": "Bordenstein SR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA899808", "pmid": "36543914", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Role of the gut microbiome in lung fibrosis"}]}, "bording-jorgensen m": {"display": "Bording-Jorgensen M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "bordugo a": {"display": "Bordugo A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746509", "pmid": "34946200", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota in an infant with propionic acidemia before and after probiotic supplement…"}]}, "borecki ib": {"display": "Borecki IB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA259274", "pmid": "25568281", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Wake Forest Vervet Microbiome Project"}]}, "borenstein e": {"display": "Borenstein E", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB6456", "pmid": "30340536", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA314903", "pmid": "24178246", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Pseudomonas Aeruginosa Early CF Adaptive Changes"}, {"acc": "PRJNA504891", "pmid": "36464700", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA510445", "pmid": "31959989", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA510445", "pmid": "34525965", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA516442", "pmid": "30784601", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Depletion of human DNA from complex clinical samples for metagenomic sequencing"}, {"acc": "PRJNA530252", "pmid": "32631930", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effect of cycled, inhaled tobramycin on the sputum microbiome in cystic fibrosis"}]}, "borg dj": {"display": "Borg DJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1076911", "pmid": "38995243", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant and maternal gut microbiomes"}]}, "borgeraas h": {"display": "Borgeraas H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}, {"acc": "PRJEB59861", "pmid": "31678062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "borges al": {"display": "Borges AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698986", "pmid": "37973815", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}]}, "borges rm": {"display": "Borges RM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA649484", "pmid": "34389536", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "borges v": {"display": "Borges V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "35750157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "36131032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "37696933", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "borgogna c": {"display": "Borgogna C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "bork p": {"display": "Bork P", "group": false, "n_studies": 18, "studies": [{"acc": "PRJEB11685", "pmid": "26811868", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children"}, {"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12357", "pmid": "27126044", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB20308", "pmid": "29669589", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Similarity of the dog and human gut microbiomes in gene content and response to diet"}, {"acc": "PRJEB24041", "pmid": "29496731", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Selective maternal seeding and environment shape the human gut microbiome"}, {"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB28730", "pmid": "30658995", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB46778", "pmid": "27126044", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJEB76677", "pmid": "28039159", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota differs between children with Inflammatory Bowel Disease and healthy sibli…"}, {"acc": "PRJNA289586", "pmid": "30747106", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}, {"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "borodina l": {"display": "Borodina L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1061168", "pmid": "38440790", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Excess fermentation and lactic acidosis as detrimental functions of the gut microbes in t…"}, {"acc": "PRJNA1366497", "pmid": "42553090", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Bifidobacterium- and Escherichia-dominated gut microbiome metabolic shifts in tuberculosi…"}]}, "borrego mj": {"display": "Borrego MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "35750157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "36131032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "borrel g": {"display": "Borrel G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA942254", "pmid": "37650612", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomics of fecal samples from ant-eating mammal species"}]}, "borren nz": {"display": "Borren NZ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685168", "pmid": "34297922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics suggest diverse mechanisms for response to biologic therapies in IBD"}]}, "borruel n": {"display": "Borruel N", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}, {"acc": "PRJNA1171764", "pmid": "40524271", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut metagenome of IBD patients and healthy controls"}, {"acc": "PRJNA851554", "pmid": "34938418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomes of the gut microbiota of CD patients that required resection from a Belgian c…"}]}, "borry m": {"display": "Borry M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}]}, "borte s": {"display": "Borte S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633381", "pmid": "33662387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "IgA deficiency microbiota"}]}, "bortz e": {"display": "Bortz E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1198110", "pmid": "40439559", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Clinical infection by Francisella tularensis ssp. holarctica in stranded beluga whales fr…"}]}, "bos ki": {"display": "Bos KI", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB37508", "pmid": "32528126", "pos": "last", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "A treponemal genome from an historic plague victim supports recent emergence of yaws and…"}, {"acc": "PRJEB62879", "pmid": "39694065", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}, {"acc": "PRJNA445215", "pmid": "29959351", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "bosch aatm": {"display": "Bosch AATM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA555020", "pmid": "31676793", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}]}, "bosch de": {"display": "Bosch DE", "group": false, "n_studies": 27, "studies": [{"acc": "PRJEB10878", "pmid": "42171373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB12449", "pmid": "42171373", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Reproducibility of associations between the human gut microbiome and colorectal cancer as…"}, {"acc": "PRJEB24041", "pmid": "42171373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Selective maternal seeding and environment shape the human gut microbiome"}, {"acc": "PRJEB32631", "pmid": "42171373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB33500", "pmid": "42171373", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Mediterranean diet intervention in overweight and obese subjects leads to multiple benefi…"}, {"acc": "PRJEB35738", "pmid": "42171373", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Clostridium difficile infection patient microbiome"}, {"acc": "PRJEB37249", "pmid": "42171373", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Statin therapy is associated with lower prevalence of gut microbiota dysbiosis"}, {"acc": "PRJEB38742", "pmid": "42171373", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Imidazole propionate is increased in diabetes and associated with dietary patterns and al…"}, {"acc": "PRJEB45799", "pmid": "42171373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB6070", "pmid": "42171373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6456", "pmid": "42171373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6997", "pmid": "42171373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut and Oral Microbiome Dysbiosis in Rheumatoid Arthritis"}, {"acc": "PRJEB7774", "pmid": "42171373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "42171373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB9584", "pmid": "42171373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "KCL_twins2"}, {"acc": "PRJNA1019702", "pmid": "42171373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA398089", "pmid": "42171373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA422434", "pmid": "42171373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA447983", "pmid": "42171373", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}, {"acc": "PRJNA48479", "pmid": "42171373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA564397", "pmid": "42171373", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics Reveals Impact of Geography, Antibiotics and Acute Diarrhoeal Disease on the…"}, {"acc": "PRJNA674880", "pmid": "42171373", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Microbiota Restoration Reduces Antibiotic Resistant Bacteria Gut Colonization in Patients…"}, {"acc": "PRJNA685168", "pmid": "42171373", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Multi-omics suggest diverse mechanisms for response to biologic therapies in IBD"}, {"acc": "PRJNA705895", "pmid": "42171373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA748262", "pmid": "42171373", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}, {"acc": "PRJNA752686", "pmid": "42171373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Profile of the Gut Microbiome of Preterm Infants and its Association to Infan…"}, {"acc": "PRJNA999635", "pmid": "42171373", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut Microbiome of isolated villages in rural Honduras"}]}, "bosch i": {"display": "Bosch I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "bosco c": {"display": "Bosco C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "bosma nc": {"display": "Bosma NC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "bosomprah s": {"display": "Bosomprah S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "41986657", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "bosse e": {"display": "Bosse E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}]}, "bossers a": {"display": "Bossers A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1049329", "pmid": "39315772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human oropharyngeal resistome of COPD cases and controls using ResCap"}]}, "bostanci n": {"display": "Bostanci N", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37731", "pmid": "33816334", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "42203854", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB38528", "pmid": "42203854", "pos": "first", "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}]}, "bottacini f": {"display": "Bottacini F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA422569", "pmid": "30126456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}]}, "bottu j": {"display": "Bottu J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA379120", "pmid": "30504906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}]}, "boucher yf": {"display": "Boucher YF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB17097", "pmid": "39878462", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "St Johns Island Resistome project"}, {"acc": "PRJDB17097", "pmid": "40226095", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "St Johns Island Resistome project"}]}, "bouchez t": {"display": "Bouchez T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46489", "pmid": "35848130", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In situ characterization of the genomic content of viruses of methanogenic archaea in ana…"}]}, "bouchier c": {"display": "Bouchier C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA371487", "pmid": "28715422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Leishmania RNA Virus Genomics'' study from French Guiana"}]}, "bouckaert j": {"display": "Bouckaert J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA705894", "pmid": "33883261", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenomics of Belgian mosquitoes"}]}, "boudreau dk": {"display": "Boudreau DK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "bougnoux me": {"display": "Bougnoux ME", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "bouillaguet s": {"display": "Bouillaguet S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB26080", "pmid": "30356779", "pos": "first", "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Microbiota of infected dental roots indentified by 16S rRNA gene amplicon sequencing"}, {"acc": "PRJEB50897", "pmid": "40244028", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental pulp"}]}, "bouillot jl": {"display": "Bouillot JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB23292", "pmid": "29899081", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysbiosis, including decreased gut microbial richness (MGR) and composition modifications…"}]}, "boulund f": {"display": "Boulund F", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB37731", "pmid": "33208514", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "33816334", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "39015337", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "boulund u": {"display": "Boulund U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46943", "pmid": "41387423", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}]}, "boumbaly s": {"display": "Boumbaly S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "boumezbeur f": {"display": "Boumezbeur F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}]}, "bouquet j": {"display": "Bouquet J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644725", "pmid": "32958861", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}]}, "bourdet-sicard r": {"display": "Bourdet-Sicard R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52748", "pmid": "36794816", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome function and composition in infants from rural Kenya and association with…"}, {"acc": "PRJEB6456", "pmid": "36794816", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "bourokba n": {"display": "Bourokba N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA478488", "pmid": "32591010", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Chinese human skin metagenome"}]}, "bourquin m": {"display": "Bourquin M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA781406", "pmid": "35444202", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Vanishing Glaciers Project"}]}, "bourreau e": {"display": "Bourreau E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA371487", "pmid": "28715422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Leishmania RNA Virus Genomics'' study from French Guiana"}]}, "boushey ha": {"display": "Boushey HA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "bouter ke": {"display": "Bouter KE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "bouyahia nm": {"display": "Bouyahia NM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762668", "pmid": "35547149", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal and comparative analysis of Tunisian newborns gut microbiota according to de…"}]}, "bouzek dc": {"display": "Bouzek DC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1015704", "pmid": "40042126", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal and oropharyngeal microbiota from infants with cystic fibrosis on and off beta-lact…"}]}, "bowden r": {"display": "Bowden R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39143045", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}, {"acc": "PRJNA1081952", "pmid": "39367018", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "bowden s": {"display": "Bowden S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1236482", "pmid": "42020750", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Short-term clinical evolution of Enterococcus faecium"}]}, "bowerman kl": {"display": "Bowerman KL", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1200893", "pmid": "41809988", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}, {"acc": "PRJNA544874", "pmid": "31928131", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome analysis of mice in association with graft-vs-host disease"}, {"acc": "PRJNA562766", "pmid": "33208745", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA725899", "pmid": "36747007", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of wild rodent colon, cecum and faeces"}]}, "bowyer rce": {"display": "Bowyer RCE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB72531", "pmid": "38424099", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prebiotic intervention for muscle function and cognition"}]}, "boyaval p": {"display": "Boyaval P", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB32631", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA322188", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA339914", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA475246", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "boyer c": {"display": "Boyer C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "boyle dl": {"display": "Boyle DL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}]}, "bozio ch": {"display": "Bozio CH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "bozorgmehr t": {"display": "Bozorgmehr T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA838575", "pmid": "40623174", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "bozza fa": {"display": "Bozza FA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "bozza pt": {"display": "Bozza PT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "braat s": {"display": "Braat S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39143045", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}, {"acc": "PRJNA1081952", "pmid": "39367018", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "braccia d": {"display": "Braccia D", "group": false, "n_studies": 40, "studies": [{"acc": "PRJEB1220", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB22207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJEB32135", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9576", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA188481", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA221723", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA305507", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA319574", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA322188", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA328899", "pmid": "38172624", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA398089", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA436562", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA485056", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA489090", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA504891", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA510445", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA542703", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA557731", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA633576", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA715601", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA853174", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "bradley bt": {"display": "Bradley BT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "33827948", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "bradley f": {"display": "Bradley F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42304", "pmid": "31843589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differences in Fecal Microbiomes and Metabolomes of People With vs Without Irritable Bowe…"}]}, "bradley je": {"display": "Bradley JE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA725899", "pmid": "36747007", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of wild rodent colon, cecum and faeces"}]}, "bradshaw cs": {"display": "Bradshaw CS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "brady a": {"display": "Brady A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA275349", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA48479", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "brady al": {"display": "Brady AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA377096", "pmid": "28367229", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soda lake innocuated bioreactors"}]}, "brady sf": {"display": "Brady SF", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB14383", "pmid": "34551287", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Oral microbiome samples from the Philippines"}, {"acc": "PRJNA275349", "pmid": "34551287", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA48479", "pmid": "34551287", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "brahe lk": {"display": "Brahe LK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB25727", "pmid": "31138673", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The impact of AXOS intake in overweight individuals with metabolic syndrome."}]}, "brandberg j": {"display": "Brandberg J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "brandslund i": {"display": "Brandslund I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}]}, "brandt c": {"display": "Brandt C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA799199", "pmid": "35256725", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Evaluation of microbiome enrichment and host DNA depletion in human vaginal samples using…"}]}, "brandt s": {"display": "Brandt S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA916259", "pmid": "40140473", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}]}, "brann e": {"display": "Bränn E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62678", "pmid": "31641004", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "BASIC: Biology, Affect, Stress, Imaging and Cognition in pregnancy"}]}, "braun j": {"display": "Braun J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "braun jm": {"display": "Braun JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1139690", "pmid": "40340756", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "HOME Study fecal samples"}]}, "braun l": {"display": "Braun L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}]}, "brauner a": {"display": "Brauner A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893826", "pmid": "38622998", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Culture-independent long read metagenomic diagnostics for genomic surveillance and infect…"}]}, "brazao c": {"display": "Brazão C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "brealey jc": {"display": "Brealey JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64334", "pmid": "38294254", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Multi-omics of host-gut microbiota interactions in healthy and parasitized farmed Atlanti…"}]}, "brearley ca": {"display": "Brearley CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522699", "pmid": "31427729", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}]}, "bredon m": {"display": "Bredon M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB110927", "pmid": "39454892", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Durigast_F_prausnitzii_ICI_gastric_adenocarcinoma"}]}, "brehio p": {"display": "Brehio P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "breitbart m": {"display": "Breitbart M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA16209", "pmid": "16336043", "pos": null, "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of RNA viruses in human feces"}]}, "breitwieser fp": {"display": "Breitwieser FP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA745199", "pmid": "29340642", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics sequencing of infectious microbes from ocular sarcoidosis tissue specimens"}]}, "brejnrod a": {"display": "Brejnrod A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715601", "pmid": "38135681", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "38730321", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA916259", "pmid": "38135681", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}]}, "brennan dc": {"display": "Brennan DC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28510", "pmid": "27633952", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diverse virome in kidney transplant patients contains multiple viral subtypes with dist…"}]}, "brennan pa": {"display": "Brennan PA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA747761", "pmid": "37938667", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Atlanta, USA and Maputo, Mozambique Children gut microbiome Metagenome"}]}, "brenner h": {"display": "Brenner H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "breselge s": {"display": "Breselge S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}]}, "breton l": {"display": "Breton L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA478488", "pmid": "32591010", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Chinese human skin metagenome"}]}, "bridier-nahmias a": {"display": "Bridier-Nahmias A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "briggs de": {"display": "Briggs DE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352376", "pmid": "28072390", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}]}, "brigidi p": {"display": "Brigidi P", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB25727", "pmid": "31138673", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The impact of AXOS intake in overweight individuals with metabolic syndrome."}, {"acc": "PRJNA278393", "pmid": "25981789", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA278393", "pmid": "27462302", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA525982", "pmid": "30948795", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transpl…"}, {"acc": "PRJNA877820", "pmid": "32209716", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}, {"acc": "PRJNA914532", "pmid": "36639555", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "Levofloxacin prophylaxis and parenteral nutrition have a detrimental effect on intestinal…"}]}, "briken p": {"display": "Briken P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB86263", "pmid": "39218875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gender-affirming hormonal therapy induces a gender-concordant fecal metagenome transition…"}]}, "brinkac l": {"display": "Brinkac L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA543520", "pmid": "31337807", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "32239170", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}]}, "brinker u": {"display": "Brinker U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42185", "pmid": "34192537", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}]}, "brittnacher mj": {"display": "Brittnacher MJ", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA285502", "pmid": "26288277", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiota transplantation (FMT) for ulcerative colitis"}, {"acc": "PRJNA314903", "pmid": "24178246", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Pseudomonas Aeruginosa Early CF Adaptive Changes"}, {"acc": "PRJNA510445", "pmid": "31959989", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA510445", "pmid": "34525965", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA516442", "pmid": "30784601", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Depletion of human DNA from complex clinical samples for metagenomic sequencing"}, {"acc": "PRJNA530252", "pmid": "32631930", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effect of cycled, inhaled tobramycin on the sputum microbiome in cystic fibrosis"}]}, "britton gj": {"display": "Britton GJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA946744", "pmid": "39666007", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Homo sapiens metagenomic sequences"}]}, "britton k": {"display": "Britton K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}]}, "britton ra": {"display": "Britton RA", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "britz-mckibbin p": {"display": "Britz-McKibbin P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991269", "pmid": "38589361", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "briviba m": {"display": "Briviba M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62817", "pmid": "38868903", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome encoded purine and amino acid pathways present prospective biomarkers for…"}]}, "brix s": {"display": "Brix S", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB26795", "pmid": "30609941", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB51635", "pmid": "36604748", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}, {"acc": "PRJEB6456", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB84944", "pmid": "40885737", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of 56 mother-infant dyads from the ALADDIN birth cohort"}, {"acc": "PRJEB97976", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome maturation during weaning"}, {"acc": "PRJEB97980", "pmid": "42203770", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential impact of doxycycline treatment on antimicrobial resistance genes in the enteri…"}, {"acc": "PRJEB98012", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Creeping Fat"}, {"acc": "PRJEB98069", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Distinct Microbial and Resistome Signatures Differentiate Healthy and Inflamed Ileal Pouc…"}, {"acc": "PRJNA633381", "pmid": "33662387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "IgA deficiency microbiota"}]}, "brocklehurst p": {"display": "Brocklehurst P", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "31534227", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA400115", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}, {"acc": "PRJNA806984", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}, {"acc": "PRJNA994433", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Variability of Bifidobacterium Species in the Infant Gut is Independent of M…"}]}, "brodin p": {"display": "Brodin P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "brognan m": {"display": "Brognan M", "group": false, "n_studies": 16, "studies": [{"acc": "PRJEB12669", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB24771", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB32135", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA287207", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA322188", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA339914", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA473126", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA524703", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA549787", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA557731", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA715615", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural infant gut microbiota"}]}, "bronk jk": {"display": "Bronk JK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "bronowski c": {"display": "Bronowski C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62041", "pmid": "37980461", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rotavirus Vaccine Immunogenicity (RoVI) shotgun metagenomics"}]}, "brook tc": {"display": "Brook TC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB22207", "pmid": "31844297", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJNA63661", "pmid": "32436839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "brooks b": {"display": "Brooks B", "group": false, "n_studies": 7, "studies": [{"acc": "PRJNA221723", "pmid": "24468033", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "29180750", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "29180750", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA327106", "pmid": "28073918", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "29180750", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "29925423", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376580", "pmid": "29180750", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hospital (NICU) surfaces and sinks"}, {"acc": "PRJNA376580", "pmid": "30770768", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hospital (NICU) surfaces and sinks"}, {"acc": "PRJNA417343", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y5 Cohort)"}]}, "brooks ef": {"display": "Brooks EF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1236482", "pmid": "42020750", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Short-term clinical evolution of Enterococcus faecium"}]}, "broring ts": {"display": "Bröring TS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "brosseau s": {"display": "Brosseau S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "broudin c": {"display": "Broudin C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "brouwer a": {"display": "Brouwer A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473421", "pmid": "31086216", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Folsomia candida gut metagenome sequence reads"}]}, "brouwer msm": {"display": "Brouwer MSM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "38659981", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "brouwer rww": {"display": "Brouwer RWW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA798191", "pmid": "36038938", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bamboo microbiota study in infants"}]}, "brown aa": {"display": "Brown AA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA916259", "pmid": "40140473", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}]}, "brown an": {"display": "Brown AN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "brown bp": {"display": "Brown BP", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1143669", "pmid": "39707483", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of neonates exposed to HIV"}, {"acc": "PRJNA526942", "pmid": "33137401", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "uncultured crAssphage strain:ZA | isolates :M186D4, C0521BW15,C0526BW15, C0521BD4, and C0…"}]}, "brown cm": {"display": "Brown CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "brown ct": {"display": "Brown CT", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA215102", "pmid": "24451181", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant gut Metagenome"}, {"acc": "PRJNA273761", "pmid": "29636439", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "29636439", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA321218", "pmid": "27819664", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA327106", "pmid": "28073918", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "29636439", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}]}, "brown h": {"display": "Brown H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA390646", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA633576", "pmid": "33479326", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}]}, "brown hk": {"display": "Brown HK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA630999", "pmid": "33665175", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}]}, "brown i": {"display": "Brown I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA642893", "pmid": "33212154", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin microbiome from cutaneous T-cell lymphoma patients and healthy volunteers"}]}, "brown j": {"display": "Brown J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA726052", "pmid": "35422497", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effects of drinking water chlorination on childrens intestinal flora and resistomes in Dh…"}, {"acc": "PRJNA747761", "pmid": "37938667", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Atlanta, USA and Maputo, Mozambique Children gut microbiome Metagenome"}]}, "brown jl": {"display": "Brown JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1023249", "pmid": "38881311", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "cultivated microbial species from anaerobic digester sludge and goat feces"}]}, "brown js": {"display": "Brown JS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA558989", "pmid": "32004459", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomics of Staphylococcus epidermidis and contextual metagenome"}]}, "brown-elliott ba": {"display": "Brown-Elliott BA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "30429252", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "brown-jaque m": {"display": "Brown-Jaque M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA590575", "pmid": "32317653", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Bacteriophages in human samples"}]}, "browne hp": {"display": "Browne HP", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}, {"acc": "PRJEB32631", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA400115", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}, {"acc": "PRJNA806984", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}, {"acc": "PRJNA994433", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Variability of Bifidobacterium Species in the Infant Gut is Independent of M…"}]}, "brownell i": {"display": "Brownell I", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}, {"acc": "PRJNA1369410", "pmid": "42242497", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics sequencing from patients with CD4 lymphopenia"}, {"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "bruggeling ce": {"display": "Bruggeling CE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87602", "pmid": "37243505", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteria in colitis associated cancer development"}]}, "brugger d": {"display": "Brugger D", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1029896", "pmid": "39227902", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA660305", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism, up-regulated colon inf…"}, {"acc": "PRJNA660966", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism and up-regulated colon…"}]}, "brugiroux s": {"display": "Brugiroux S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}, {"acc": "PRJEB26596", "pmid": "29051233", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}]}, "brugnara c": {"display": "Brugnara C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA679286", "pmid": "34320399", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Global genome analyses reveal a vast and dynamic anellovirus landscape within the human v…"}]}, "bruin sc": {"display": "Bruin SC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "bruna g": {"display": "Bruna G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1406675", "pmid": "41901112", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "GEO accession GSE317287 is currently private and is scheduled to be released on Jul 01, 2…"}]}, "brunak s": {"display": "Brunak S", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12636", "pmid": "26818667", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of P. acnes levels in NGS data from cancer samples"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "brunck m": {"display": "Brunck M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1260751", "pmid": "41536238", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal Obesity Alters Human Milk Oligosaccharides Content and Promotes Early Acquisitio…"}]}, "brune w": {"display": "Brune W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "brunke s": {"display": "Brunke S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573821", "pmid": "32919472", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Whole Meta-genome shotgun sequencing of stool samples from human treated with antibiotics"}]}, "brunkwall l": {"display": "Brunkwall L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "brunner d": {"display": "Brunner D", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1108908", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1108960", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1109334", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}]}, "bruno vm": {"display": "Bruno VM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA475137", "pmid": "33245689", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhizopus oryzae Genome sequencing and assembly"}]}, "bruscadin jj": {"display": "Bruscadin JJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA987743", "pmid": "38163076", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Ruminal and Fecal Microbiomes of Brazilian Nelore Cattle"}]}, "brushett s": {"display": "Brushett S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "brusselaers n": {"display": "Brusselaers N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB100868", "pmid": "42644416", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "PREVENT 1: Gut microbiota development and health in early life"}]}, "brussow h": {"display": "Brüssow H", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB42539", "pmid": "34756056", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "FUT2/FUT3 genes sequences and nasopharyngeal shotgun metagenomics from the Microbiota and…"}, {"acc": "PRJNA506325", "pmid": "23102968", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Phages Raw sequence reads"}, {"acc": "PRJNA806984", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}]}, "bruttin a": {"display": "Bruttin A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA506325", "pmid": "23102968", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Phages Raw sequence reads"}]}, "bryant a": {"display": "Bryant A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657818", "pmid": "33377127", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}]}, "bryant m": {"display": "Bryant M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}]}, "bryant re": {"display": "Bryant RE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA911205", "pmid": "37726348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Psychosocial adversity experienced in utero and early life is associated with variation i…"}]}, "bu k": {"display": "Bu K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1320699", "pmid": "42088498", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "16S sequencing of infant stool Metagenome"}, {"acc": "PRJNA1420872", "pmid": "41027803", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of gut/stool samples Metagenome"}]}, "bubic b": {"display": "Bubic B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA642893", "pmid": "33212154", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin microbiome from cutaneous T-cell lymphoma patients and healthy volunteers"}]}, "bucardo f": {"display": "Bucardo F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA853174", "pmid": "35891376", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "bucci v": {"display": "Bucci V", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1071720", "pmid": "38572716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FECBUD Study Fecal Metagenomes"}, {"acc": "PRJNA1121316", "pmid": "39747680", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}, {"acc": "PRJNA259179", "pmid": "25337874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Studies of intestinal microbiome and infection resistance"}, {"acc": "PRJNA445968", "pmid": "28883399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA445968", "pmid": "30282828", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "buchacher t": {"display": "Buchacher T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "buchmann jp": {"display": "Buchmann JP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA348754", "pmid": "27939314", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}]}, "buchs nc": {"display": "Buchs NC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44214", "pmid": "34983654", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in the gut microbiome in colon cancer surgery patients: a pilot observational stu…"}]}, "buck cb": {"display": "Buck CB", "group": false, "n_studies": 24, "studies": [{"acc": "PRJEB13870", "pmid": "34083435", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Hypertension is one of the most prevalent cardiovascular diseases worldwide. Recent findi…"}, {"acc": "PRJEB1786", "pmid": "34083435", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB6456", "pmid": "34083435", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6997", "pmid": "34083435", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut and Oral Microbiome Dysbiosis in Rheumatoid Arthritis"}, {"acc": "PRJNA188481", "pmid": "34083435", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA268964", "pmid": "34083435", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "34083435", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA289586", "pmid": "34083435", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA290380", "pmid": "34083435", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA300541", "pmid": "34083435", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA327106", "pmid": "34083435", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA328899", "pmid": "34083435", "pos": "last", "reason_code": "site_unknown", "src": "B", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA354235", "pmid": "34083435", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut metagenome and metatranscriptome raw sequence reads."}, {"acc": "PRJNA396064", "pmid": "30541782", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}, {"acc": "PRJNA422434", "pmid": "34083435", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA46333", "pmid": "34083435", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA48479", "pmid": "34083435", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "34083435", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA491626", "pmid": "34083435", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut virome of Cameroonians living in close proximity with bats"}, {"acc": "PRJNA504891", "pmid": "34083435", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504921", "pmid": "34083435", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA524703", "pmid": "34083435", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA545408", "pmid": "34083435", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Longitudinal study of the human gut virome"}, {"acc": "PRJNA63661", "pmid": "34083435", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "buck ga": {"display": "Buck GA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA876771", "pmid": "36975801", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Vaginal microbiome metagenome inference accuracy: differential measurement error accordin…"}]}, "buck rh": {"display": "Buck RH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177009", "pmid": "40738103", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A human milk oligosaccharide alters the microbiome, circulating hormones, cytokines and m…"}]}, "bucking r": {"display": "Bücking R", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB15633", "pmid": "42618579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJNA284162", "pmid": "42618579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "STL Infant Twins Microbiome"}, {"acc": "PRJNA301903", "pmid": "42618579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA379120", "pmid": "42618579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA497734", "pmid": "42618579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "buckley jp": {"display": "Buckley JP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1139690", "pmid": "40340756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "HOME Study fecal samples"}]}, "buckley rh": {"display": "Buckley RH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}]}, "budden kf": {"display": "Budden KF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA562766", "pmid": "33208745", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}]}, "budhisawasdi v": {"display": "Budhisawasdi V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "budhu a": {"display": "Budhu A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "budkina ay": {"display": "Budkina AY", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA755866", "pmid": "34696436", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viruses in Bats"}, {"acc": "PRJNA755887", "pmid": "34696436", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Viruses in Bats"}]}, "budree s": {"display": "Budree S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "buendia ma": {"display": "Buendia MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA986525", "pmid": "38441000", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "2'-fucoysllactose treatment of C57BL/6 adult mice fecal metagenomics"}]}, "buenrostro jd": {"display": "Buenrostro JD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "buer j": {"display": "Buer J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA947377", "pmid": "38366600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Establishment of a non-Westernized gut microbiota in men who have sex with men is associa…"}]}, "buffie cg": {"display": "Buffie CG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA259179", "pmid": "25337874", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Studies of intestinal microbiome and infection resistance"}]}, "bui-hai m": {"display": "Bui-Hai M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1262354", "pmid": "41603547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMBARK - Establishing a Monitoring Baseline for Antimicrobial Resistance in Key environme…"}]}, "buitron g": {"display": "Buitrón G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807808", "pmid": "37080313", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microalgae-bacteria system for domestic wastewater treatment"}]}, "bukin sv": {"display": "Bukin SV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA875570", "pmid": "38217803", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of microbial communities in gradient zones of the sedimentary strata…"}]}, "bukin ys": {"display": "Bukin YS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA875570", "pmid": "38217803", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of microbial communities in gradient zones of the sedimentary strata…"}]}, "bulatov s": {"display": "Bulatov S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1061168", "pmid": "38440790", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Excess fermentation and lactic acidosis as detrimental functions of the gut microbes in t…"}]}, "bullock k": {"display": "Bullock K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}]}, "bunk b": {"display": "Bunk B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}, {"acc": "PRJEB26596", "pmid": "29051233", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}]}, "buonomo ar": {"display": "Buonomo AR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675110", "pmid": "33659220", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiome signature in COVID-19 positive patients"}]}, "buque a": {"display": "Buqué A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "burchell j": {"display": "Burchell J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA495079", "pmid": "31097029", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "New circovirus infecting phyton liver"}]}, "burdet c": {"display": "Burdet C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "burgdorf k": {"display": "Burgdorf K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}]}, "burgdorf ks": {"display": "Burgdorf KS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}]}, "burgos da silva m": {"display": "Burgos da Silva M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "burgsdorf i": {"display": "Burgsdorf I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA515489", "pmid": "31086829", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genomic collection of symbionts associated with Petrosia ficiformis"}, {"acc": "PRJNA515489", "pmid": "32840024", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genomic collection of symbionts associated with Petrosia ficiformis"}, {"acc": "PRJNA515489", "pmid": "33537022", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genomic collection of symbionts associated with Petrosia ficiformis"}]}, "burguete garcia ai": {"display": "Burguete García AI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA721692", "pmid": "36786619", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "METAGENOMIC ANALYSIS OF MEXICAN CHILDHOOD GUT MICROBIOTA"}]}, "burke b": {"display": "Burke B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1201756", "pmid": "37940330", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome Metagenome"}]}, "burkhard pr": {"display": "Burkhard PR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39870", "pmid": "33646178", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Oral microbial community profiles in Parkinson’s disease"}]}, "burkhardt l": {"display": "Burkhardt L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15376", "pmid": "29067007", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome, metatranscriptome and exo-proteome analyses identify molecular keys and main…"}]}, "burnham ca": {"display": "Burnham CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA301903", "pmid": "27572443", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}]}, "burnham cd": {"display": "Burnham CD", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA1148144", "pmid": "40128855", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Biosignatures of late-onset extraintestinal bacterial infections"}, {"acc": "PRJNA301903", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA701982", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic-driven intestinal dysbiosis in paediatric SBS alters microbiome functions and…"}, {"acc": "PRJNA884103", "pmid": "37134153", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}]}, "burns ar": {"display": "Burns AR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA290380", "pmid": "32728114", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "burns cc": {"display": "Burns CC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27927929", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "burns ds": {"display": "Burns DS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945408", "pmid": "38085102", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prev…"}]}, "burrow w": {"display": "Burrow W", "group": false, "n_studies": 10, "studies": [{"acc": "PRJEB14964", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Maternal Secretor Status and Microbiota Composition"}, {"acc": "PRJEB27914", "pmid": "41751912", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Six-week endurance exercise alters gut metagenome that is not reflected in systemic metab…"}, {"acc": "PRJEB29078", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA307231", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA32089", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}, {"acc": "PRJNA322188", "pmid": "41751912", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA445932", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA541981", "pmid": "41751912", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome in melanoma patients"}, {"acc": "PRJNA565546", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "fecal sample Raw sequence reads"}, {"acc": "PRJNA763023", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Dysbiosis of human gut microbiome in young-onset colorectal cancer"}]}, "burstein d": {"display": "Burstein D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA327106", "pmid": "28073918", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}]}, "burt td": {"display": "Burt TD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "burton em": {"display": "Burton EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "busby b": {"display": "Busby B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB6456", "pmid": "33411719", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA48479", "pmid": "33411719", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "busch p": {"display": "Busch P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA609054", "pmid": "33416984", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic data set of enrichment samples from azores 2018 Raw sequence reads"}]}, "bush a": {"display": "Bush A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1080233", "pmid": "39214237", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Breathing Together severe wheeze and asthma cohort"}, {"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "bushman fd": {"display": "Bushman FD", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA451186", "pmid": "30376898", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Placenta Microbiome"}, {"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "busi e": {"display": "Busi E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "42039832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "42039832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "busi sb": {"display": "Busi SB", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA379120", "pmid": "36717704", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "39739091", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA489090", "pmid": "36717704", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA595749", "pmid": "36717704", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}, {"acc": "PRJNA595749", "pmid": "39739091", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}, {"acc": "PRJNA781406", "pmid": "35444202", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Vanishing Glaciers Project"}]}, "busing p": {"display": "Büsing P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884026", "pmid": "36724220", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic investigation of lake Issyk-Kul, Kyrgyzstan"}]}, "busonero f": {"display": "Busonero F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "buss c": {"display": "Buss C", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB15633", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJNA284162", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "STL Infant Twins Microbiome"}, {"acc": "PRJNA301903", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA379120", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA497734", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "bussolati o": {"display": "Bussolati O", "group": false, "n_studies": 173, "studies": [{"acc": "PRJDB4176", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB10878", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB1220", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB15257", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB17784", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The fecal microbiota in L-DOPA naive PD patients"}, {"acc": "PRJEB1786", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB21528", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB23662", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A novel affordable reagent for room temperature storage and transport of fecal samples fo…"}, {"acc": "PRJEB24006", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24557", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Alterations of the intestinal microbiome in patients with retinal artery occlusion"}, {"acc": "PRJEB24771", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB25514", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A cross-sectional study of compositional and functional profiles of gut microbiota in Sar…"}, {"acc": "PRJEB26795", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB27005", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27928", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB28338", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Influence of travel on the gut microbiome of cricketers"}, {"acc": "PRJEB29052", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29052", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29127", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB30834", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30924", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Comparative analysis of amplicon and metagenomic sequencing methods reveals key features…"}, {"acc": "PRJEB32135", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB33013", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB33098", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB35615", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Associations between the intestinal microbiome and the complement system in age-related m…"}, {"acc": "PRJEB36820", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB38528", "pmid": "38441032", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB39610", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39610", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39813", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenomic study of the oral (saliva) and Gut (stool) microbiome in subjects with Croh…"}, {"acc": "PRJEB41102", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB41463", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB42363", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB44737", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB46788", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB6070", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6092", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "metagenome fecal microbiota, Ilumina seq reads of 12 individuals at 2 timepoints"}, {"acc": "PRJEB6456", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB7774", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB8347", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJEB9576", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA1046438", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA215106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA221723", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA268964", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA287207", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA289586", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA290380", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA307231", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA319574", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA321218", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA321218", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA322188", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA324129", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human fecal microbiome before and after consumption of AH1206 - Raw sequence reads"}, {"acc": "PRJNA324672", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA327106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA331138", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of Italian metagenome"}, {"acc": "PRJNA336518", "pmid": "36123315", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA339012", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics analysis of donor and recepient samples from fecal transplant for Recurrent…"}, {"acc": "PRJNA339914", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA340216", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota and metagenomic diversity of omnivore, vegetarian and vegan healthy subjec…"}, {"acc": "PRJNA345144", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA360177", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA360177", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA362284", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA371647", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Raw sequence reads"}, {"acc": "PRJNA373879", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Healthy human fecal metagenomes variably reactivate Irinotecan active metabolite"}, {"acc": "PRJNA379120", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379741", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "MECFS metagenomics"}, {"acc": "PRJNA380118", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA382011", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics-Guided Pathogen Discovery in Travelers' Diarrhea"}, {"acc": "PRJNA384716", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA386422", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA389927", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Viral and Bacterial Communities of Colorectal Cancer"}, {"acc": "PRJNA392180", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA397112", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA397219", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA400072", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA401385", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA412411", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA414479", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Total lipopolysaccharide from the human gut microbiome silences toll-like receptor signal…"}, {"acc": "PRJNA418941", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota functionality of healthy controls and individuals with kidney stones"}, {"acc": "PRJNA421881", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA422434", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422569", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA428202", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "healthy human gut metagenomics"}, {"acc": "PRJNA431482", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA431482", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA436562", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA438847", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA445968", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA449784", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA449784", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA482729", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of native and acetylated high amylose maize starch on fecal pH, short chain fatty…"}, {"acc": "PRJNA485056", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA486782", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486795", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Modification of gut microbiota-bile acid-intestinal FXR signaling leads to the clinical b…"}, {"acc": "PRJNA487305", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Effects of non-nutritive sweeteners on the composition of the human gut microbiome"}, {"acc": "PRJNA489090", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489693", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA492716", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA497734", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA499081", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}, {"acc": "PRJNA503909", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA503909", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA509512", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiota changes are associated with acquisition of antibiotic resistant genes among in…"}, {"acc": "PRJNA518912", "pmid": "36123315", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA521587", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521587", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA524703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA527208", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA529124", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA531203", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA532538", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome of the gut microbiota in multiple system atrophy patients"}, {"acc": "PRJNA542703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA544527", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA547591", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547717", "pmid": "36123315", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "human oral metagenome Raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA553191", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA555020", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA557731", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA562600", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Multi-omic analysis of Clostridioides difficile infection and response to therapy in pedi…"}, {"acc": "PRJNA562766", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA588513", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA597839", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota, visceral fat and sleeve gastrectomy"}, {"acc": "PRJNA613834", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Functional Microbial Responses to Alcohol Abstinence in Patients with Alcohol Use Disorder"}, {"acc": "PRJNA615162", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615842", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}, {"acc": "PRJNA624223", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624763", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA626004", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics Fecal Microbiome Dysbiosis in Parkinsons Disease"}, {"acc": "PRJNA628604", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}, {"acc": "PRJNA630999", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA633576", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA634145", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA637175", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}, {"acc": "PRJNA637878", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA637878", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA644725", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA644725", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA648487", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA649316", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Hi-C and metagenomic sequencing of neutropenic patient microbiomes"}, {"acc": "PRJNA658422", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "gut microbiome shifts associated with Henoch-Schonlein purpura"}, {"acc": "PRJNA663646", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "External validation cohorts for CRC-SNP analysis"}, {"acc": "PRJNA664544", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut microbes Metagenome"}, {"acc": "PRJNA665061", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665854", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS of feces and saliva of pancreatic cancer patients"}, {"acc": "PRJNA678426", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes."}, {"acc": "PRJNA678454", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of stool samples from two South African cohorts"}, {"acc": "PRJNA679346", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA679346", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA685797", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The Influence of the gut microbiome on BCG-induced trained immunity"}, {"acc": "PRJNA686265", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-mediated metabolism effects on immunity in rural and urban African populat…"}, {"acc": "PRJNA687536", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA688164", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688274", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA692830", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole genome metagenomic analysis of the gut microbiome in HIV-1 infected individuals on…"}, {"acc": "PRJNA695570", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA698986", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA705895", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA714678", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA714678", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA730640", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA742740", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiota of Kidney Stone patients and live-in partners"}, {"acc": "PRJNA750475", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Longitudinal Analysis of Gut Microbiome among healthy women"}, {"acc": "PRJNA752006", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing to Examine the Gut Microbiome in Konzo"}, {"acc": "PRJNA762543", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA763503", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Character of microbial engraftment following the fecal microbiota transplantation in pati…"}, {"acc": "PRJNA772518", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA772518", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA845806", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Trial of Diet in Gestational Diabetes Mellitus: Metabolic Consequences to Mother and Offs…"}, {"acc": "PRJNA975734", "pmid": "37728335", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Disentangling the interactions between nasopharyngeal and gut microbiome and their involv…"}]}, "bustamante cd": {"display": "Bustamante CD", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB49206", "pmid": "30439937", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}, {"acc": "PRJNA246597", "pmid": "24568772", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}, {"acc": "PRJNA246597", "pmid": "24809476", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "bustamante-garrido m": {"display": "Bustamante-Garrido M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352475", "pmid": "36420990", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "bustin ka": {"display": "Bustin KA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "butcher am": {"display": "Butcher AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA551026", "pmid": "32130897", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Monogenic skin disease driven by staphylococcal dysbiosis"}]}, "butcher j": {"display": "Butcher J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA818303", "pmid": "36823020", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated metagenomics, metaviromics, and metatranscriptomics reveal colonic virome-bact…"}]}, "buti m": {"display": "Buti M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "butler a": {"display": "Butler A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49383", "pmid": "36163498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm Neonatal Stool Metagenomes"}]}, "butler em": {"display": "Butler ÉM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701480", "pmid": "34186487", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vaginal seeding in babies born by caesarean section (ECOBABe trial) - shotgun metagenomic…"}]}, "buttler j": {"display": "Buttler J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1198110", "pmid": "40439559", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Clinical infection by Francisella tularensis ssp. holarctica in stranded beluga whales fr…"}]}, "buule j": {"display": "Buule J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}]}, "buyukkahraman e": {"display": "Büyükkahraman E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1375659", "pmid": "42003651", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Antibiotic resistance gene profile in pigeon fecal microbiomes by shotgun metagenomics"}]}, "byrd al": {"display": "Byrd AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46333", "pmid": "25279917", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "28679656", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "byrne a": {"display": "Byrne A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1143669", "pmid": "39707483", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of neonates exposed to HIV"}]}, "byrne d": {"display": "Byrne D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "37230981", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "bzdok d": {"display": "Bzdok D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}]}, "cabada mm": {"display": "Cabada MM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698223", "pmid": "36470885", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "TD Cusco travelers study"}]}, "caballero is": {"display": "Caballero IS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA371487", "pmid": "28715422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Leishmania RNA Virus Genomics'' study from French Guiana"}]}, "caballero s": {"display": "Caballero S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1121295", "pmid": "38964511", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FEDEX Study Fecal Metagenomes"}, {"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}, {"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "cabrera l": {"display": "Cabrera L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA268964", "pmid": "27172044", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "27172044", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "cabrera rubio r": {"display": "Cabrera Rubio R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "cabrera-freitag p": {"display": "Cabrera-Freitag P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991269", "pmid": "38589361", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "cabrera-rubio r": {"display": "Cabrera-Rubio R", "group": false, "n_studies": 11, "studies": [{"acc": "PRJEB6456", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB71847", "pmid": "38785596", "pos": "first", "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Gut and respiratory tract microbiota in children younger than 12 months hospitalised for…"}, {"acc": "PRJEB74322", "pmid": "38870906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "cackett g": {"display": "Cackett G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA240141", "pmid": "36284144", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "caduff l": {"display": "Caduff L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA706606", "pmid": "36416733", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of Water Chlorination of Children's Gut Microbiomes in Bangladesh"}, {"acc": "PRJNA726052", "pmid": "35422497", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effects of drinking water chlorination on childrens intestinal flora and resistomes in Dh…"}]}, "caenepeel c": {"display": "Caenepeel C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA804384", "pmid": "37052201", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Inflammatory bowel disease patients undergoing biological therapy"}]}, "caesar r": {"display": "Caesar R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "caetano cp": {"display": "Caetano CP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "cagney o": {"display": "Cagney O", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA633576", "pmid": "33479326", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA772730", "pmid": "35071138", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The FOUNDATION Study: Hospital Formulation Of B. infantis EVC001 Utilized In The NICU To…"}]}, "cai c": {"display": "Cai C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB23052", "pmid": "33510860", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJNA516054", "pmid": "33510860", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Whole metagenomic analysis of the enteric microbiota in children with autism spectrum dis…"}]}, "cai g": {"display": "Cai G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "cai j": {"display": "Cai J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA412411", "pmid": "34163067", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "cai k": {"display": "Cai K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB26795", "pmid": "30609941", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJNA633381", "pmid": "33662387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "IgA deficiency microbiota"}]}, "cai q": {"display": "Cai Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "cai r": {"display": "Cai R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA973819", "pmid": "38188910", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Pathogenetic characterization of a Micrococcus luteus strain isolated from an infant"}]}, "cai x": {"display": "Cai X", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA924947", "pmid": "38651859", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA986854", "pmid": "40467587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "stool sample of paired mother-infant for 16S rRNA sequencing analysis"}]}, "cai y": {"display": "Cai Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "cai z": {"display": "Cai Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "caim s": {"display": "Caim S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB14935", "pmid": "29096601", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Term and preterm shotgun samples"}, {"acc": "PRJEB22207", "pmid": "31844297", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJNA63661", "pmid": "32436839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "cairns t": {"display": "Cairns T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961698", "pmid": "37610205", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Very Early Life Microbiome and Metabolome Correlates with Primary Vaccination Variability…"}]}, "calabon ms": {"display": "Calabon MS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": "40631735", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "calabrese s": {"display": "Calabrese S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1233203", "pmid": null, "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Microbiome of recirculating aquaculture systems under different particle loads (MikroRAS)"}]}, "caldeira m": {"display": "Caldeira M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "caldera s": {"display": "Caldera S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "calderon m": {"display": "Calderon M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA268964", "pmid": "27172044", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "27172044", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "caldwell j": {"display": "Caldwell J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1187541", "pmid": "39753133", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Raw metagenomics sequencing from human hippocampi."}]}, "calfee cs": {"display": "Calfee CS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "caliebe a": {"display": "Caliebe A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB66169", "pmid": "41540446", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient DNA study provides clues to leprosy susceptibility in medieval Europe"}]}, "callahan bj": {"display": "Callahan BJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1086504", "pmid": "38752784", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gardnerella diversity by metagenomic sequencing in the vaginal microbiome"}, {"acc": "PRJNA288562", "pmid": "26283357", "pos": null, "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}]}, "callan k": {"display": "Callan K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41353", "pmid": "33997698", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Mass burial genomics reveals outbreak of enteric paratyphoid fever in the Late Medieval t…"}]}, "calmy a": {"display": "Calmy A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB25228", "pmid": "31616669", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Cardiobacterium hominis"}]}, "calvete-torre i": {"display": "Calvete-Torre I", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA698773", "pmid": "34715437", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "calvo c": {"display": "Calvo C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB71847", "pmid": "38785596", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Gut and respiratory tract microbiota in children younger than 12 months hospitalised for…"}]}, "calvo m": {"display": "Calvo M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "camacho fr": {"display": "Camacho FR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1148165", "pmid": "39947133", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut metagenomic samples of IBD patients"}]}, "camacho-martinez p": {"display": "Camacho-Martinez P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55075", "pmid": "38524774", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Molecular and phylogenetic characterization of the monkeypox outbreak in Andalusia, Spain"}]}, "camandaroba mp": {"display": "Camandaroba MP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "camara a": {"display": "Camara A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "camara j": {"display": "Camara J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "camargo a": {"display": "Camargo A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1191223", "pmid": "40813371", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of early life antibiotic and probiotic treatment on gut microbiome and resistome o…"}]}, "camargo ca": {"display": "Camargo CA", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB29078", "pmid": "37874156", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA296814", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA322188", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}]}, "cambra-pelleja m": {"display": "Cambra-Pellejà M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "cameron ads": {"display": "Cameron ADS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1279254", "pmid": "41562608", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of synovial joint fluid collected from feedlot cattle. Raw sequenc…"}]}, "cameron h": {"display": "Cameron H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1013332", "pmid": "38206014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Scalp microbiome study"}]}, "cameron sjs": {"display": "Cameron SJS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177813", "pmid": "39796584", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "2FL age specific bifidobacterium effect"}]}, "camhi s": {"display": "Camhi S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "camiolo s": {"display": "Camiolo S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "cammarota g": {"display": "Cammarota G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA643802", "pmid": "32859933", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "FMT for diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal…"}]}, "campana a": {"display": "Campana A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1036590", "pmid": "38318164", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "The Pediatric Gut Microbiome and Virome"}]}, "campana mg": {"display": "Campana MG", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA205039", "pmid": "24568097", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Teposcolula Yucundaa, Oaxaca, Mexico Metagenome"}, {"acc": "PRJNA573108", "pmid": null, "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Sedimentary DNA from Mubwindi Swamp"}]}, "campbell le": {"display": "Campbell LE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1261853", "pmid": "38816345", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia sp. CA6269 genome sequencing from clinical and environmental samples"}]}, "campbell s": {"display": "Campbell S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "campisi sc": {"display": "Campisi SC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "campo jj": {"display": "Campo JJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1320699", "pmid": "42088498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "16S sequencing of infant stool Metagenome"}]}, "campolim cm": {"display": "Campolim CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA894691", "pmid": "37082122", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Maternal exposure to air pollution changes gut microbiota in mice"}]}, "campos ac": {"display": "Campos AC", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1072081", "pmid": "40237336", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Identifying Biomarkers and Trajectories of Typical Neurodevelopment in Children, the BRAI…"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "campos c": {"display": "Campos C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "campos-madueno ei": {"display": "Campos-Madueno EI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA931814", "pmid": "37720151", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistome and microbiome analysis of stool samples from healthy people using shotgun meta…"}, {"acc": "PRJNA931814", "pmid": "39198442", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistome and microbiome analysis of stool samples from healthy people using shotgun meta…"}]}, "camusat m": {"display": "Camusat M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "canalda-baltrons a": {"display": "Canalda-Baltrons A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1146994", "pmid": "38556088", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Personal traits, lifestyle decisions, and geography shape our dietary intake and conseque…"}]}, "cancela j": {"display": "Cancela J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39870", "pmid": "33646178", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Oral microbial community profiles in Parkinson’s disease"}]}, "cancio i": {"display": "Cancio I", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "candela m": {"display": "Candela M", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA278393", "pmid": "25981789", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA278393", "pmid": "27462302", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA525982", "pmid": "30948795", "pos": "last", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transpl…"}, {"acc": "PRJNA877820", "pmid": "32209716", "pos": "last", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}, {"acc": "PRJNA914532", "pmid": "36639555", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "Levofloxacin prophylaxis and parenteral nutrition have a detrimental effect on intestinal…"}]}, "candeliere f": {"display": "Candeliere F", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "38047279", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "42039832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "42039832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "candotti f": {"display": "Candotti F", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}, {"acc": "PRJNA46333", "pmid": "24170601", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "canela n": {"display": "Canela N", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA352475", "pmid": "36420990", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA949443", "pmid": "37175775", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Targeted Locus (Loci)"}]}, "canfield dr": {"display": "Canfield DR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "21779173", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "cani pd": {"display": "Cani PD", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB43505", "pmid": "34535959", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut barrier and microbiota changes with glycine and branched chain amino acids supplement…"}, {"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "cann ik": {"display": "Cann IK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA49397", "pmid": "20962874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Canine gastrointestinal metagenome"}]}, "cannavan fds": {"display": "Cannavan FdS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA717815", "pmid": "38376220", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human salivary metagenome in health and disease"}]}, "cannavan fs": {"display": "Cannavan FS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA717815", "pmid": "35758687", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human salivary metagenome in health and disease"}]}, "cannon jl": {"display": "Cannon JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA853174", "pmid": "35891376", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "cannons ac": {"display": "Cannons AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "cano a": {"display": "Cano A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "cantacessi c": {"display": "Cantacessi C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "cantao me": {"display": "Cantão ME", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA60545", "pmid": "24706600", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes isolated from NE Brazil"}]}, "cantarel bl": {"display": "Cantarel BL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA32089", "pmid": "19043404", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}]}, "canto r": {"display": "Canto R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}]}, "cantor a": {"display": "Cantor A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1320699", "pmid": "42088498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "16S sequencing of infant stool Metagenome"}, {"acc": "PRJNA1420872", "pmid": "41027803", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of gut/stool samples Metagenome"}]}, "cantu j": {"display": "Cantú J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}]}, "cantu v": {"display": "Cantu V", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA597371", "pmid": "34193290", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal Selective Pressure and Coevolution Project Part 4 human placebo Metagenome"}, {"acc": "PRJNA602729", "pmid": "34079079", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}]}, "cao j": {"display": "Cao J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB29433", "pmid": "39510074", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nanopore-based metagenomic sequencing analysis of control subjects and patients with AD.…"}, {"acc": "PRJNA1151839", "pmid": "39663251", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Salivary microbiome in burning mouth syndrome"}]}, "cao l": {"display": "Cao L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA938144", "pmid": "37754563", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HOLA gut microbiome"}]}, "cao lj": {"display": "Cao LJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA784757", "pmid": "35902819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "The Diagnosis Performance of Mycobacterium Tuberculosis Complex by Metagenomic Next-gener…"}]}, "cao m": {"display": "Cao M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390667", "pmid": "42071227", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal sample"}]}, "cao q": {"display": "Cao Q", "group": false, "n_studies": 3, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}, {"acc": "PRJNA504921", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA506811", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "HUMAN GUT RECTAL BACTERIA Metagenome"}]}, "cao s": {"display": "Cao S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9818", "pmid": "26351661", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The gut DNA viromes of Malawian twins discordant for severe acute undernutrition"}]}, "cao xj": {"display": "Cao XJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA778020", "pmid": "35089209", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Clinical metagenomic sequencing for rapid diagnosis of Neonatal meningitis caused by Urea…"}]}, "cao y": {"display": "Cao Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB18471", "pmid": "41695140", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamics of the gut microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA398187", "pmid": "41695140", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Targeted loci environmental"}]}, "cao z": {"display": "Cao Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1052964", "pmid": "39034349", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA1052964", "pmid": "40860434", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}]}, "caplice nm": {"display": "Caplice NM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352475", "pmid": "36420990", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "capobianchi mr": {"display": "Capobianchi MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB121228", "pmid": "38793608", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}]}, "capoluongo e": {"display": "Capoluongo E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675110", "pmid": "33659220", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiome signature in COVID-19 positive patients"}]}, "capri m": {"display": "Capri M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA877820", "pmid": "32209716", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "caputi v": {"display": "Caputi V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA977671", "pmid": "38320392", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Microbiome analysis of cold related stress in poultry"}]}, "caraballo a": {"display": "Caraballo A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "carabin h": {"display": "Carabin H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}]}, "carasso s": {"display": "Carasso S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA628604", "pmid": "32511695", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}]}, "caray-counil l": {"display": "Caray-Counil L", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "carberry c": {"display": "Carberry C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8939", "pmid": "28085156", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of Rumen microbiomes reveals the functional isoforms driving microbi…"}]}, "carbonell e": {"display": "Carbonell E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9783", "pmid": "26351665", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing Chalcolithic human remains from El Portalón, Spain"}]}, "cardenas a": {"display": "Cárdenas A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA437202", "pmid": "33117317", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Red Sea coral metagenomes"}]}, "cardia caserta l": {"display": "Cardia Caserta L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA613851", "pmid": "38091183", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "INVESTIGATION OF THE BACTERIAL AND VIRAL DIVERSITY OF DIDELPHID OPOSSUMS FROM BRAZILIAN F…"}]}, "cardoso pm": {"display": "Cardoso PM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA649484", "pmid": "34389536", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "cardoso tf": {"display": "Cardoso TF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA987743", "pmid": "38163076", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Ruminal and Fecal Microbiomes of Brazilian Nelore Cattle"}]}, "caredda g": {"display": "Caredda G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA615842", "pmid": "33494335", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}]}, "carelli m": {"display": "Carelli M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB67641", "pmid": "38709303", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental Plaque Microbiota Sequence Counts for Microbial Profiling and Resistance Genes Det…"}]}, "caria j": {"display": "Caria J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "carini m": {"display": "Carini M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1121316", "pmid": "37060545", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}]}, "carl ma": {"display": "Carl MA", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA301903", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA701982", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic-driven intestinal dysbiosis in paediatric SBS alters microbiome functions and…"}]}, "carlin lg": {"display": "Carlin LG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "carlino n": {"display": "Carlino N", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39407346", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "carlisle em": {"display": "Carlisle EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA362245", "pmid": "24169577", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Microbiome assembly across multiple body sites in low-birthweight infants"}, {"acc": "PRJNA362245", "pmid": "28630471", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Microbiome assembly across multiple body sites in low-birthweight infants"}]}, "carlton jm": {"display": "Carlton JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "carmeli y": {"display": "Carmeli Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35816", "pmid": "32585945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota of carriers of extended-spectrum beta-lactamase or carbapenemase-producing…"}]}, "carninci p": {"display": "Carninci P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "caro nr": {"display": "Caro NR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "caro v": {"display": "Caro V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1004259", "pmid": "38047654", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic and Amplicon-based Nanopore Sequencing of French Human Monkeypox direct from…"}]}, "caroe c": {"display": "Carøe C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB12466", "pmid": "26161690", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Meta-genomic analysis of toilet waste from long distance flights"}, {"acc": "PRJNA992639", "pmid": "38876584", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Novel misos shape distinct microbial ecologies"}]}, "carol m": {"display": "Carol M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}]}, "carpenter c": {"display": "Carpenter C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}]}, "carpenter ml": {"display": "Carpenter ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24568772", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}, {"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "carpenter re": {"display": "Carpenter RE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA986135", "pmid": "37469596", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "UTI microbiome"}, {"acc": "PRJNA995059", "pmid": "36825940", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Respiratory Microbiome"}]}, "carr l": {"display": "Carr L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB51728", "pmid": "39341154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "carrai m": {"display": "Carrai M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA841246", "pmid": "35765950", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Feline panleukopenia and healthy control feline faecal samples"}]}, "carretero jm": {"display": "Carretero JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9783", "pmid": "26351665", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing Chalcolithic human remains from El Portalón, Spain"}]}, "carrieri a": {"display": "Carrieri A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976261", "pmid": "31153098", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole metagenomic shotgun sequencing of the subgingival microbiome of diabetics and non-d…"}, {"acc": "PRJNA976261", "pmid": "37257865", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole metagenomic shotgun sequencing of the subgingival microbiome of diabetics and non-d…"}]}, "carrigan m": {"display": "Carrigan M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657818", "pmid": "33377127", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}]}, "carrillo de santa pau e": {"display": "Carrillo de Santa Pau E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "carrillo-reyes j": {"display": "Carrillo-Reyes J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807808", "pmid": "37080313", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microalgae-bacteria system for domestic wastewater treatment"}]}, "carrillo-terrazas m": {"display": "Carrillo-Terrazas M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}]}, "carrion o": {"display": "Carrión O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522699", "pmid": "31427729", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}]}, "carrion p": {"display": "Carrión P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43276", "pmid": "34527890", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Salmonella enterica from a soldier from the 1652-siege of Barcelona (Spain) supports hist…"}]}, "carroll mw": {"display": "Carroll MW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "carter a": {"display": "Carter A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}, {"acc": "PRJNA623215", "pmid": "32349121", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing to evaluate massively multiplexed detection with Cas13"}]}, "carter cl": {"display": "Carter CL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA604820", "pmid": "34936382", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin metagenome from antibiotics treated healthy human subjects"}]}, "carter ka": {"display": "Carter KA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA876771", "pmid": "36975801", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Vaginal microbiome metagenome inference accuracy: differential measurement error accordin…"}]}, "carter mm": {"display": "Carter MM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177009", "pmid": "40738103", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A human milk oligosaccharide alters the microbiome, circulating hormones, cytokines and m…"}]}, "carty t": {"display": "Carty T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42304", "pmid": "31843589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differences in Fecal Microbiomes and Metabolomes of People With vs Without Irritable Bowe…"}]}, "caruso d": {"display": "Caruso D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA615842", "pmid": "33494335", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}]}, "carvalho acplf": {"display": "Carvalho ACPLF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1072081", "pmid": "40237336", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Identifying Biomarkers and Trajectories of Typical Neurodevelopment in Children, the BRAI…"}]}, "carvalho fm": {"display": "Carvalho FM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA60545", "pmid": "24706600", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes isolated from NE Brazil"}]}, "cary sc": {"display": "Cary SC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA431961", "pmid": "39696719", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Geothermal fumarole subsurface microbial communities from Mt. Erebus, Antarctica"}]}, "casaburi g": {"display": "Casaburi G", "group": false, "n_studies": 10, "studies": [{"acc": "PRJNA273761", "pmid": "36081629", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "36081629", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "36081629", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA327106", "pmid": "36081629", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "36081629", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA390646", "pmid": "29242832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA390646", "pmid": "30338216", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA390646", "pmid": "31423298", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "36081629", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA630999", "pmid": "33665175", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA633576", "pmid": "33479326", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA63661", "pmid": "36081629", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "casanova s": {"display": "Casanova S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "casar c": {"display": "Casar C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB86263", "pmid": "39218875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gender-affirming hormonal therapy induces a gender-concordant fecal metagenome transition…"}]}, "casas i": {"display": "Casas I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB71847", "pmid": "38785596", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Gut and respiratory tract microbiota in children younger than 12 months hospitalised for…"}]}, "casbarra l": {"display": "Casbarra L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1252002", "pmid": "40615445", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Testing the limits of short-reads metagenomic classifications programs in waste water tre…"}]}, "case rj": {"display": "Case RJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB17097", "pmid": "39878462", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "St Johns Island Resistome project"}, {"acc": "PRJDB17097", "pmid": "40226095", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "St Johns Island Resistome project"}]}, "casellas f": {"display": "Casellas F", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}, {"acc": "PRJNA851554", "pmid": "34938418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomes of the gut microbiota of CD patients that required resection from a Belgian c…"}]}, "caserta m": {"display": "Caserta M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29554870", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "casey e": {"display": "Casey E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA422569", "pmid": "30126456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}]}, "casimiro-soriguer cs": {"display": "Casimiro-Soriguer CS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55075", "pmid": "38524774", "pos": "first", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Molecular and phylogenetic characterization of the monkeypox outbreak in Andalusia, Spain"}]}, "casotti r": {"display": "Casotti R", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "cass c": {"display": "Cass C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1067813", "pmid": "39731916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C. difficile-associated mouse and human fecal metagenomes"}]}, "cassidy lm": {"display": "Cassidy LM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB104199", "pmid": "42531397", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "The genomic identity of early smallpox in South America"}]}, "cassidy skb": {"display": "Cassidy SKB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46333", "pmid": "28679656", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "cassidy-bushrow a": {"display": "Cassidy-Bushrow A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52295", "pmid": "38117587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Precocious infant gut microbiome reprograms enterocytes and promotes childhood obesity ri…"}]}, "castagner b": {"display": "Castagner B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA925842", "pmid": "36750571", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut bacteria glycan metabolism - Raw sequence reads"}]}, "castagnetti a": {"display": "Castagnetti A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA278393", "pmid": "27462302", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}]}, "castaldo g": {"display": "Castaldo G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675110", "pmid": "33659220", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiome signature in COVID-19 positive patients"}]}, "castaneda-marquez ac": {"display": "Castañeda-Márquez AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA721692", "pmid": "36786619", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "METAGENOMIC ANALYSIS OF MEXICAN CHILDHOOD GUT MICROBIOTA"}]}, "castel j": {"display": "Castel J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "castelle cj": {"display": "Castelle CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA215102", "pmid": "24451181", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant gut Metagenome"}]}, "castelo-soccio l": {"display": "Castelo-Soccio L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1111475", "pmid": "39813050", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics in patients with central centrifugal cicatricial alopecia (CCCA)"}, {"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}]}, "castilletti c": {"display": "Castilletti C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB121228", "pmid": "38793608", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}, {"acc": "PRJEB121228", "pmid": "41683794", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}]}, "castillo j": {"display": "Castillo J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB20527", "pmid": "26627545", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Corticosteroid therapy and airflow obstruction influence the bronchial microbiome, which…"}]}, "castillo jj": {"display": "Castillo JJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}]}, "castillo-fernandez j": {"display": "Castillo-Fernandez J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1222153", "pmid": "41547860", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Waltham Catalogue for the Canine Gut Microbiome: A complete taxonomic and functional cata…"}]}, "casto a": {"display": "Casto A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29898986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "casto am": {"display": "Casto AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "30576430", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "castro c": {"display": "Castro C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27932649", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "28302791", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "castro cj": {"display": "Castro CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27927929", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "28418726", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "28818890", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "34673119", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "castro g": {"display": "Castro G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA894691", "pmid": "37082122", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Maternal exposure to air pollution changes gut microbiota in mice"}]}, "castro ja": {"display": "Castro JA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB39661", "pmid": "41513932", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}, {"acc": "PRJEB62571", "pmid": "41513932", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}]}, "castro m": {"display": "Castro M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "castro-mejia jl": {"display": "Castro-Mejía JL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40396485", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA926386", "pmid": "37635262", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Phagestorage"}]}, "castro-nallar e": {"display": "Castro-Nallar E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA446042", "pmid": "37577334", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomic Asthma Chile"}]}, "catapano al": {"display": "Catapano AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA615842", "pmid": "33494335", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}]}, "catassi g": {"display": "Catassi G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA300541", "pmid": "42312244", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "cau l": {"display": "Cau L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA551026", "pmid": "32130897", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Monogenic skin disease driven by staphylococcal dysbiosis"}]}, "caussy c": {"display": "Caussy C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "cavanagh jp": {"display": "Cavanagh JP", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB29052", "pmid": "30505830", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJNA898628", "pmid": "37187112", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "PINGU Fecal samples Metagenome"}]}, "cavani e": {"display": "Cavani E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB100868", "pmid": "42644416", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "PREVENT 1: Gut microbiota development and health in early life"}]}, "cd-gemm team": {"display": "CD-GEMM Team", "group": true, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "cecchi r": {"display": "Cecchi R", "group": false, "n_studies": 72, "studies": [{"acc": "PRJEB10878", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB1220", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB26795", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB27005", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27928", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB29052", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29127", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB30834", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB33098", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB38528", "pmid": "38441032", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB39610", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB41102", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB46788", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB6070", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB7774", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJNA1046438", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA268964", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA289586", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA290380", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA307231", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA327106", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA345144", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA360177", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA379120", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA380118", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA386422", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA392180", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA397112", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA400072", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA401385", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA422434", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA431482", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA438847", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA445968", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA449784", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA503909", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA521587", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA527208", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA529124", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA531203", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA542703", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA547591", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA549787", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA553191", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA562600", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Multi-omic analysis of Clostridioides difficile infection and response to therapy in pedi…"}, {"acc": "PRJNA588513", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA624223", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624763", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA633576", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA644725", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA658422", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "gut microbiome shifts associated with Henoch-Schonlein purpura"}, {"acc": "PRJNA679346", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA687536", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA688164", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688274", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA695570", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA714678", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA752006", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing to Examine the Gut Microbiome in Konzo"}, {"acc": "PRJNA772518", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}]}, "cecil km": {"display": "Cecil KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1139690", "pmid": "40340756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "HOME Study fecal samples"}]}, "celikel c": {"display": "Celikel C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "celiker ot": {"display": "Çeliker OT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1187541", "pmid": "39753133", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Raw metagenomics sequencing from human hippocampi."}]}, "celniker se": {"display": "Celniker SE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA607328", "pmid": "32381611", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Whole-genome sequencing of bacteria, fungi, plants, and metagenomes"}]}, "celum c": {"display": "Celum C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28287142", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28711653", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29281620", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "celussi m": {"display": "Celussi M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB77875", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Seawater metagenomes collected during Jellyfish enrichment experiment"}, {"acc": "PRJEB85785", "pmid": "41437131", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Seawater Metagenomes from a Wastewater Exposure Experiment"}]}, "cembrowska-lech d": {"display": "Cembrowska-Lech D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "cen c": {"display": "Cen C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA602729", "pmid": "34079079", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}]}, "cen x": {"display": "Cen X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1119243", "pmid": "38947127", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbial Metabolism Analysis in the Cecum of New Zealand Rabbits under Short-Term Fatten…"}]}, "cenier a": {"display": "Cenier A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1307628", "pmid": "41461922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbial oral-gut translocation in advanced chronic liver disease is linked to exacerbat…"}]}, "cent a": {"display": "Cent A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29898986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "centurion vb": {"display": "Centurion VB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29861", "pmid": "31550653", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "UNVEILING RESISTOME PROFILES IN THE SEDIMENTS OF AN ANTARCTIC VOLCANIC ISLAND"}]}, "cerbino-neto j": {"display": "Cerbino-Neto J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "cercamondi ci": {"display": "Cercamondi CI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA300541", "pmid": "38049420", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "cereto-massague a": {"display": "Cereto-Massagué A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA949443", "pmid": "37175775", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Targeted Locus (Loci)"}]}, "cerf-bensussan n": {"display": "Cerf-Bensussan N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "cervino acl": {"display": "Cervino ACL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36461", "pmid": "32360114", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Laparoscopic Roux-en-Y gastric bypass and sleeve gastrectomy on gut microbiota:…"}]}, "cesare marincola f": {"display": "Cesare Marincola F", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA273761", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}]}, "cetiner of": {"display": "Cetiner OF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55714", "pmid": "37397142", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analyses of the intestinal microbiome from neonates in the MIS BAIR trial"}, {"acc": "PRJEB55714", "pmid": "41853385", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analyses of the intestinal microbiome from neonates in the MIS BAIR trial"}]}, "cha w": {"display": "Cha W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA660443", "pmid": "34785751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the human gut during enteric infection"}]}, "chaabane c": {"display": "Chaabane C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB50897", "pmid": "40244028", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental pulp"}, {"acc": "PRJEB65720", "pmid": "37722530", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acute bacterial meningitis due to Neisseria meningitidis serotype B missed by a multiplex…"}]}, "chabe m": {"display": "Chabé M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27005", "pmid": "30726303", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}]}, "chabot i": {"display": "Chabot I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "chadee k": {"display": "Chadee K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "chaganti sr": {"display": "Chaganti SR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA679730", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2018"}, {"acc": "PRJNA702522", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2019"}]}, "chai j": {"display": "Chai J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA741606", "pmid": "38254181", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Rumen content metagenome of goat kids"}]}, "chai y": {"display": "Chai Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1107349", "pmid": "38980166", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Polysaccharide degradation by microbial communities"}]}, "chai yf": {"display": "Chai YF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA866095", "pmid": "36046746", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Genome sequencing and assembly"}]}, "chaianant n": {"display": "Chaianant N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1018099", "pmid": "38938117", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Cell-Lysis Treatment Prior to Saliva Metagenomic DNA Extraction on the Oral Mic…"}]}, "chaima d": {"display": "Chaima D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "chaiprasert p": {"display": "Chaiprasert P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA609587", "pmid": null, "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Buffalo rumen microbial community"}]}, "chaisaingmongkol j": {"display": "Chaisaingmongkol J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "chaithongwongwatthana s": {"display": "Chaithongwongwatthana S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "chak b": {"display": "Chak B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}, {"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "chakaroun r": {"display": "Chakaroun R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "chalise m": {"display": "Chalise M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29668933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "challis c": {"display": "Challis C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB17694", "pmid": "27912057", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Di…"}]}, "chamings a": {"display": "Chamings A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36405", "pmid": "34603219", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Study of the bacterial resistome in people and animals from Australia"}]}, "champlin re": {"display": "Champlin RE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "chan at": {"display": "Chan AT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "chan b": {"display": "Chan B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "chan ecy": {"display": "Chan ECY", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "chan fkl": {"display": "Chan FKL", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}, {"acc": "PRJNA353598", "pmid": "28539351", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA504921", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA506811", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "HUMAN GUT RECTAL BACTERIA Metagenome"}, {"acc": "PRJNA644456", "pmid": "33785557", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}, {"acc": "PRJNA876804", "pmid": "36357381", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Human Metagenomic Metagenome"}]}, "chan jcy": {"display": "Chan JCY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "chan jz": {"display": "Chan JZ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1775", "pmid": "23571589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diagnostic Metagenomics: A Culture-Independent Approach to the Investigation of Bacterial…"}]}, "chan kf": {"display": "Chan KF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573821", "pmid": "32919472", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Whole Meta-genome shotgun sequencing of stool samples from human treated with antibiotics"}]}, "chan mcw": {"display": "Chan MCW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA353598", "pmid": "28539351", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}]}, "chan mtv": {"display": "Chan MTV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}]}, "chan pks": {"display": "Chan PKS", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}, {"acc": "PRJNA353598", "pmid": "28539351", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA504921", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA506811", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "HUMAN GUT RECTAL BACTERIA Metagenome"}, {"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}, {"acc": "PRJNA876804", "pmid": "36357381", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Human Metagenomic Metagenome"}]}, "chan shj": {"display": "Chan SHJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "chan sy": {"display": "Chan SY", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA707065", "pmid": "35075183", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "NiPPeR Study - pilot microbiome investigation"}]}, "chan w": {"display": "Chan W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1092681", "pmid": "38696336", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Validation of an automated, end-to-end metagenomic sequencing assay for agnostic detectio…"}]}, "chan yh": {"display": "Chan YH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "chandra s": {"display": "Chandra S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "chang a": {"display": "Chang A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "chang b": {"display": "Chang B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA801796", "pmid": "37482605", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Upper respiratory tract virus infection alters the host microbial feature"}]}, "chang bh": {"display": "Chang BH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156457", "pmid": "39731681", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acanthamoeba sequencing"}]}, "chang cc": {"display": "Chang CC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "chang e": {"display": "Chang E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB10057", "pmid": "26180832", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Variation in the Microbiota of Ixodes ticks with geography, species and sex"}, {"acc": "PRJEB10073", "pmid": "26180832", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Variation in the Microbiota of Ixodes ticks with geography, species and sex illumina"}]}, "chang eb": {"display": "Chang EB", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}]}, "chang h": {"display": "Chang H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA602729", "pmid": "34079079", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}]}, "chang hw": {"display": "Chang HW", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB38446", "pmid": "34001614", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiota (16S rDNA sequencing) and microbiome (shotgun sequencing) data of a pig model…"}, {"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": "42014682", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}]}, "chang jt": {"display": "Chang JT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}]}, "chang kc": {"display": "Chang KC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1056831", "pmid": "39006502", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota of infant cholestasis in Taiwan"}]}, "chang mh": {"display": "Chang MH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1056831", "pmid": "39006502", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota of infant cholestasis in Taiwan"}]}, "changalucha j": {"display": "Changalucha J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49206", "pmid": "28839072", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}, {"acc": "PRJEB49206", "pmid": "30118385", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}]}, "chankhamjon p": {"display": "Chankhamjon P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1148165", "pmid": "39947133", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut metagenomic samples of IBD patients"}]}, "channabasappa n": {"display": "Channabasappa N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA311208", "pmid": "27406942", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Severe gut microbiota dysbiosis is associated with poor growth in patients with short bow…"}]}, "chanon s": {"display": "Chanon S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "chao h": {"display": "Chao H", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "chao nj": {"display": "Chao NJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "chapa v": {"display": "Chapa V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "chapkin rs": {"display": "Chapkin RS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB2778", "pmid": "22546241", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}, {"acc": "PRJEB2778", "pmid": "33353204", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}]}, "chapleur o": {"display": "Chapleur O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46489", "pmid": "35848130", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In situ characterization of the genomic content of viruses of methanogenic archaea in ana…"}]}, "chapman a": {"display": "Chapman A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA899808", "pmid": "36543914", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Role of the gut microbiome in lung fibrosis"}]}, "chapman t": {"display": "Chapman T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "chappell cl": {"display": "Chappell CL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1084251", "pmid": null, "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tryptophan metabolites in fecal samples from healthy humans"}]}, "charlebois rl": {"display": "Charlebois RL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1011899", "pmid": "40155393", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Collaborative spiking study 2B for high throughput sequencing for virus detection"}]}, "charles fr": {"display": "Charles FR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA750571", "pmid": "35306253", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Resistome in sewage surviellance"}]}, "charles m": {"display": "Charles M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1092681", "pmid": "38696336", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Validation of an automated, end-to-end metagenomic sequencing assay for agnostic detectio…"}]}, "charles tc": {"display": "Charles TC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202388", "pmid": "22056233", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}, {"acc": "PRJNA202388", "pmid": "22180823", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}, {"acc": "PRJNA202388", "pmid": "24495694", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}, {"acc": "PRJNA202388", "pmid": "24911009", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}, {"acc": "PRJNA202388", "pmid": "25028422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "charlier p": {"display": "Charlier P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB32319", "pmid": "32004756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Reads sequenced from a parchment blood stain attributed to the french revolutionary Jean…"}]}, "charpagne a": {"display": "Charpagne A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42539", "pmid": "34756056", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "FUT2/FUT3 genes sequences and nasopharyngeal shotgun metagenomics from the Microbiota and…"}]}, "charretier y": {"display": "Charretier Y", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB25228", "pmid": "31616669", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Cardiobacterium hominis"}, {"acc": "PRJEB33794", "pmid": "32185143", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Changes in Microbiota Profiles After Prolonged Frozen Storage of Stool Suspensions"}, {"acc": "PRJEB57944", "pmid": "40182766", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Diagnosing endocarditis by metagenomics"}]}, "charron-lamoureux v": {"display": "Charron-Lamoureux V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "chase ab": {"display": "Chase AB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA647720", "pmid": "33727392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiome sequencing during a high fiber diet intervention"}]}, "chasekwa b": {"display": "Chasekwa B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB51728", "pmid": "39341154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "chassaing b": {"display": "Chassaing B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}]}, "chatman l": {"display": "Chatman L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "chatterjee k": {"display": "Chatterjee K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1187541", "pmid": "39753133", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Raw metagenomics sequencing from human hippocampi."}]}, "chatterjee s": {"display": "Chatterjee S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1148165", "pmid": "39947133", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut metagenomic samples of IBD patients"}]}, "chatzigiannidou i": {"display": "Chatzigiannidou I", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB6456", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB84944", "pmid": "40885737", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of 56 mother-infant dyads from the ALADDIN birth cohort"}, {"acc": "PRJEB97976", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome maturation during weaning"}, {"acc": "PRJEB97980", "pmid": "42203770", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential impact of doxycycline treatment on antimicrobial resistance genes in the enteri…"}, {"acc": "PRJEB98012", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Creeping Fat"}, {"acc": "PRJEB98069", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Distinct Microbial and Resistome Signatures Differentiate Healthy and Inflamed Ileal Pouc…"}]}, "chatzis r": {"display": "Chatzis R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1080233", "pmid": "39214237", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Breathing Together severe wheeze and asthma cohort"}]}, "chau j": {"display": "Chau J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA866654", "pmid": "36358819", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Exploring gut microbiome in predicting efficacy of immuno-therapy in non-small cell lung…"}]}, "chau kk": {"display": "Chau KK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "34609275", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "chaudhari ds": {"display": "Chaudhari DS", "group": false, "n_studies": 11, "studies": [{"acc": "PRJEB14964", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Maternal Secretor Status and Microbiota Composition"}, {"acc": "PRJEB27914", "pmid": "41751912", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Six-week endurance exercise alters gut metagenome that is not reflected in systemic metab…"}, {"acc": "PRJEB29078", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA307231", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA32089", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}, {"acc": "PRJNA322188", "pmid": "41751912", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA445932", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA541981", "pmid": "41751912", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome in melanoma patients"}, {"acc": "PRJNA565546", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "fecal sample Raw sequence reads"}, {"acc": "PRJNA763023", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Dysbiosis of human gut microbiome in young-onset colorectal cancer"}, {"acc": "PRJNA912638", "pmid": "37213047", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MICROBIOME IN AGING GUT AND BRAIN (MiaGB) STUDY"}]}, "chaudhary pp": {"display": "Chaudhary PP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417283", "pmid": "38058267", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}]}, "chauvin sd": {"display": "Chauvin SD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "chavez-caraza k": {"display": "Chávez-Caraza K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1260751", "pmid": "41536238", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal Obesity Alters Human Milk Oligosaccharides Content and Promotes Early Acquisitio…"}]}, "chawes b": {"display": "Chawes B", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40396485", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "41387423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA715601", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA916259", "pmid": "40140473", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}]}, "che y": {"display": "Che Y", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}, {"acc": "PRJNA1369410", "pmid": "42242497", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics sequencing from patients with CD4 lymphopenia"}, {"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA669352", "pmid": "33820946", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome assembly for sulfonamide subsistence and the transfer of genetic determinants"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "chebunina ns": {"display": "Chebunina NS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA547700", "pmid": "31671744", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lake Baikal Viromes Raw sequence reads"}]}, "chechi k": {"display": "Chechi K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "cheek eh": {"display": "Cheek EH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "chemaly rf": {"display": "Chemaly RF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1224818", "pmid": "38361816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with n…"}]}, "chen a": {"display": "Chen A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1139690", "pmid": "40340756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "HOME Study fecal samples"}]}, "chen b": {"display": "Chen B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA290380", "pmid": "38193687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "chen c": {"display": "Chen C", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB23052", "pmid": "41511111", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}, {"acc": "PRJNA1151597", "pmid": "40405038", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Probiotics mixture suppresses MASLD-associated hepatocellular carcinoma"}, {"acc": "PRJNA1229795", "pmid": "40691217", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Theabrownin, in combination with Zearalenone, suppressed colitis-associated colorectal ca…"}, {"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}, {"acc": "PRJNA1366117", "pmid": "39489290", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The Role of Amino Acid-Derived Metabolites in Non-alcoholic fatty liver disease (NAFLD) D…"}, {"acc": "PRJNA1366117", "pmid": "40015656", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The Role of Amino Acid-Derived Metabolites in Non-alcoholic fatty liver disease (NAFLD) D…"}, {"acc": "PRJNA1406675", "pmid": "41901112", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "GEO accession GSE317287 is currently private and is scheduled to be released on Jul 01, 2…"}, {"acc": "PRJNA775062", "pmid": "41877288", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Landscapes of bacterial, viral and metabolic signatures and their interaction in early-we…"}]}, "chen cc": {"display": "Chen CC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762484", "pmid": "34996879", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota in patients with Parkinson disease"}]}, "chen cy": {"display": "Chen CY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}]}, "chen d": {"display": "Chen D", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA237795", "pmid": "35583332", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Swine feces Targeted Locus (Loci)"}, {"acc": "PRJNA497734", "pmid": "39745374", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA843963", "pmid": "32351922", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "33553097", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "chen dw": {"display": "Chen DW", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "35545448", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "35545448", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA352475", "pmid": "35545448", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA422434", "pmid": "35545448", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA475246", "pmid": "35545448", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "chen e": {"display": "Chen E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA911205", "pmid": "37726348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Psychosocial adversity experienced in utero and early life is associated with variation i…"}]}, "chen ec": {"display": "Chen EC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "20976137", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}, {"acc": "PRJNA171119", "pmid": "21559002", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}, {"acc": "PRJNA171119", "pmid": "21779173", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "chen f": {"display": "Chen F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "chen h": {"display": "Chen H", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA1025870", "pmid": "38778483", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota transplantation significantly improved respiratory failure of amyotrophi…"}, {"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}, {"acc": "PRJNA1170175", "pmid": "40248366", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Vaginal Virome of Healthy Women and Patients with Vaginitis"}, {"acc": "PRJNA1464060", "pmid": "42293186", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Efficacy of Bifidobacterium lactis BLa80 in Preventing Early Childhood Eczema and Respira…"}, {"acc": "PRJNA336061", "pmid": "28801639", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prevotella enterotype related metagenome sequencing"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "chen hl": {"display": "Chen HL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1056831", "pmid": "39006502", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota of infant cholestasis in Taiwan"}]}, "chen j": {"display": "Chen J", "group": false, "n_studies": 15, "studies": [{"acc": "PRJEB15111", "pmid": "26932197", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}, {"acc": "PRJEB23524", "pmid": "38868710", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS data from FMT trial for the treatment of recurrent Clostridium difficile infection"}, {"acc": "PRJEB6456", "pmid": "38868710", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB85676", "pmid": "40068595", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}, {"acc": "PRJNA1151839", "pmid": "39663251", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Salivary microbiome in burning mouth syndrome"}, {"acc": "PRJNA1166969", "pmid": "39470277", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Multi-Omics Analysis of the Microbial Profile Characteristics Associated with Pulmonary A…"}, {"acc": "PRJNA1367284", "pmid": "38575146", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Probiotics mixture suppresses diet-induced MASLD: Fecal metagenomics of mice sample"}, {"acc": "PRJNA1425751", "pmid": "41994268", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome"}, {"acc": "PRJNA285502", "pmid": "38868710", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota transplantation (FMT) for ulcerative colitis"}, {"acc": "PRJNA477424", "pmid": "30619206", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "panda gut metagenome raw sequence reads Raw sequence reads"}, {"acc": "PRJNA504891", "pmid": "37596617", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37596617", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA573821", "pmid": "32919472", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Whole Meta-genome shotgun sequencing of stool samples from human treated with antibiotics"}, {"acc": "PRJNA625520", "pmid": "38868710", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Linking strain engraftment in fecal microbiota transplantation with maintenance of remiss…"}, {"acc": "PRJNA821920", "pmid": "41782637", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mental Health Screening for Babies. What can we learn from infant and caregiver behaviors…"}]}, "chen k": {"display": "Chen K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1464060", "pmid": "42293186", "pos": "first", "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Efficacy of Bifidobacterium lactis BLa80 in Preventing Early Childhood Eczema and Respira…"}, {"acc": "PRJNA592843", "pmid": "32100127", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Therapeutic effects of the in vitro cultured human gut microbiota as transplants on alter…"}, {"acc": "PRJNA602729", "pmid": "34079079", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}]}, "chen l": {"display": "Chen L", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB21259", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}, {"acc": "PRJNA427478", "pmid": "24865920", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pomacea canaliculata isolate:SZHN2017 Genome sequencing and assembly"}, {"acc": "PRJNA605028", "pmid": "38263861", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Genome sequencing and assembly"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "chen la": {"display": "Chen LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1148165", "pmid": "39947133", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut metagenomic samples of IBD patients"}]}, "chen m": {"display": "Chen M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA806510", "pmid": "40487637", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of Gut Microbiota Mediated Metformin Monotherapy Failure in Type 2 Diabetes Mellitus"}, {"acc": "PRJNA877820", "pmid": "36539432", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "chen my": {"display": "Chen MY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "chen n": {"display": "Chen N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA787952", "pmid": "35239511", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}]}, "chen o": {"display": "Chen O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1044118", "pmid": "38061464", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human oral and gut microbiome in first episode psychosis patients"}]}, "chen q": {"display": "Chen Q", "group": false, "n_studies": 10, "studies": [{"acc": "PRJDB28434", "pmid": "37979711", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Macrogenomic data of mice (PRJCA016720)"}, {"acc": "PRJNA1280936", "pmid": "41405404", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome of Infants in the Neonatal Intensive Care Unit"}, {"acc": "PRJNA322324", "pmid": "27927929", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA417283", "pmid": "41405404", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA475246", "pmid": "38486699", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}, {"acc": "PRJNA973819", "pmid": "38188910", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Pathogenetic characterization of a Micrococcus luteus strain isolated from an infant"}, {"acc": "PRJNA988496", "pmid": "38773685", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}, {"acc": "PRJNA988496", "pmid": "41405404", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}]}, "chen r": {"display": "Chen R", "group": false, "n_studies": 4, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}, {"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "chen ra": {"display": "Chen RA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "chen ry": {"display": "Chen RY", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}]}, "chen s": {"display": "Chen S", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB18471", "pmid": "41695140", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamics of the gut microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA1402009", "pmid": "41726387", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "faeces of British shorthair Raw sequence reads"}, {"acc": "PRJNA398187", "pmid": "41695140", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Targeted loci environmental"}, {"acc": "PRJNA427267", "pmid": "29235710", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pearl River metagenomics Raw sequence reads"}, {"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}, {"acc": "PRJNA812695", "pmid": "37714338", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA973819", "pmid": "38188910", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Pathogenetic characterization of a Micrococcus luteus strain isolated from an infant"}]}, "chen sc": {"display": "Chen SC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "chen sca": {"display": "Chen SCA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "chen sj": {"display": "Chen SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762484", "pmid": "34996879", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota in patients with Parkinson disease"}]}, "chen t": {"display": "Chen T", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1052964", "pmid": "39034349", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA1052964", "pmid": "40860434", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA806510", "pmid": "40487637", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of Gut Microbiota Mediated Metformin Monotherapy Failure in Type 2 Diabetes Mellitus"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "chen w": {"display": "Chen W", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB37883", "pmid": "38908894", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA1338803", "pmid": "41421358", "pos": null, "reason_code": "host_synthetic", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of faecal fermentation in vitro"}, {"acc": "PRJNA1420872", "pmid": "41027803", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of gut/stool samples Metagenome"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "41421358", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA504891", "pmid": "37596617", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37596617", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}, {"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "chen w-h": {"display": "Chen W-H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA524703", "pmid": "40600714", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA835720", "pmid": "40600714", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human feces Viral/Bacterial Metagenome"}]}, "chen wh": {"display": "Chen WH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "36376928", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "chen x": {"display": "Chen X", "group": false, "n_studies": 12, "studies": [{"acc": "PRJEB15111", "pmid": "26932197", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}, {"acc": "PRJEB23052", "pmid": "41511111", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJNA1181840", "pmid": "39966439", "pos": "first", "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Deep Nanopore Q20+ sequencing of Zymo D6331"}, {"acc": "PRJNA1231247", "pmid": "42746483", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "metagenome Raw sequence reads"}, {"acc": "PRJNA312222", "pmid": "27303377", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genome reconstructions from human gut metagenomes"}, {"acc": "PRJNA580164", "pmid": "32552447", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome Raw sequence reads"}, {"acc": "PRJNA806510", "pmid": "40487637", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of Gut Microbiota Mediated Metformin Monotherapy Failure in Type 2 Diabetes Mellitus"}, {"acc": "PRJNA812695", "pmid": "37714338", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}, {"acc": "PRJNA924947", "pmid": "38651859", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "chen y": {"display": "Chen Y", "group": false, "n_studies": 15, "studies": [{"acc": "PRJEB100868", "pmid": "42644416", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "PREVENT 1: Gut microbiota development and health in early life"}, {"acc": "PRJEB108038", "pmid": "41834868", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Jaundice and the Infant Gut Microbiome: An Integrated Shotgun Metagenomics and B…"}, {"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1029896", "pmid": "39227902", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA1184213", "pmid": "40765991", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The microbiota-dependent effect of physical activity on Crohn's disease"}, {"acc": "PRJNA1238458", "pmid": "42654723", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Raw data of 16S rRNA sequencing of preterm infants' feces (NEC study)"}, {"acc": "PRJNA1274127", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Fecal metagenome of Chinese Sturgeons (Acipenser sinensis) gut microbiota"}, {"acc": "PRJNA427478", "pmid": "24865920", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pomacea canaliculata isolate:SZHN2017 Genome sequencing and assembly"}, {"acc": "PRJNA63661", "pmid": "32436839", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA660305", "pmid": "35663372", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism, up-regulated colon inf…"}, {"acc": "PRJNA660966", "pmid": "35663372", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism and up-regulated colon…"}, {"acc": "PRJNA781781", "pmid": "38169289", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of Lactobacillus plantarum P-8 on Growth Performance and Gut Microbiota of Weaned…"}, {"acc": "PRJNA902684", "pmid": "39135694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome level reveals the regulatory effect of probiotics to mastitis rats"}, {"acc": "PRJNA950577", "pmid": "37306468", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "chen ya": {"display": "Chen YA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB14457", "pmid": "36363762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of healthy Japanese adult"}]}, "chen yb": {"display": "Chen YB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "chen z": {"display": "Chen Z", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA702770", "pmid": "33676490", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "gut microbiomes of dogs and wolves"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}, {"acc": "PRJNA905328", "pmid": "37904586", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut microbes sequencing"}, {"acc": "PRJNA936938", "pmid": "36992458", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "searching for viruses in Asiatic toad Raw sequence reads"}]}, "chen-liaw a": {"display": "Chen-Liaw A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA946744", "pmid": "39666007", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Homo sapiens metagenomic sequences"}]}, "cheng a": {"display": "Cheng A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28711653", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30383234", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "cheng as": {"display": "Cheng AS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "cheng c": {"display": "Cheng C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "cheng g": {"display": "Cheng G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB23052", "pmid": "41511111", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}]}, "cheng h": {"display": "Cheng H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA821338", "pmid": "36259361", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial pathogens and antimicrobial resistance diagnosis workflow using Nanopore adapti…"}, {"acc": "PRJNA869513", "pmid": "36259361", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An ultra-sensitive bacterial pathogen and antimicrobial resistance diagnosis workflow usi…"}]}, "cheng j": {"display": "Cheng J", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB38446", "pmid": "34001614", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiota (16S rDNA sequencing) and microbiome (shotgun sequencing) data of a pig model…"}, {"acc": "PRJEB45356", "pmid": "42014682", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA202388", "pmid": "22056233", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}, {"acc": "PRJNA202388", "pmid": "22180823", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}, {"acc": "PRJNA202388", "pmid": "24495694", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}, {"acc": "PRJNA202388", "pmid": "24911009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}, {"acc": "PRJNA202388", "pmid": "25028422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "cheng jx": {"display": "Cheng JX", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1033532", "pmid": "38014294", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Evaluating the impact of pharmaceuticals on the human gut microbiome Raw sequence reads"}]}, "cheng l": {"display": "Cheng L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1166969", "pmid": "39470277", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Multi-Omics Analysis of the Microbial Profile Characteristics Associated with Pulmonary A…"}]}, "cheng m": {"display": "Cheng M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA580164", "pmid": "32552447", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome Raw sequence reads"}]}, "cheng q": {"display": "Cheng Q", "group": false, "n_studies": 16, "studies": [{"acc": "PRJEB6456", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA273761", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA384716", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA473126", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA63661", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "cheng sj": {"display": "Cheng SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA475137", "pmid": "33245689", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhizopus oryzae Genome sequencing and assembly"}]}, "cheng zr": {"display": "Cheng ZR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}]}, "chenoll e": {"display": "Chenoll E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52748", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome function and composition in infants from rural Kenya and association with…"}, {"acc": "PRJEB6456", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "cheong pk": {"display": "Cheong PK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}]}, "cher a": {"display": "Cher A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657818", "pmid": "33377127", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}]}, "cherif a": {"display": "Cherif A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "cherkaoui a": {"display": "Cherkaoui A", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB20595", "pmid": "30065706", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hepatic brucelloma studied by next generation sequencing"}, {"acc": "PRJEB21816", "pmid": "30991963", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Listeria monocytogenes abdominal periaortitis"}, {"acc": "PRJEB25228", "pmid": "31616669", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Cardiobacterium hominis"}, {"acc": "PRJEB65720", "pmid": "37722530", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acute bacterial meningitis due to Neisseria meningitidis serotype B missed by a multiplex…"}]}, "chernitsyna sm": {"display": "Chernitsyna SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA875570", "pmid": "38217803", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of microbial communities in gradient zones of the sedimentary strata…"}]}, "cherry p": {"display": "Cherry P", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB32631", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA322188", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA339914", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA475246", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "chervaux c": {"display": "Chervaux C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA145005", "pmid": "22030749", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}]}, "chesselet mf": {"display": "Chesselet MF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB17694", "pmid": "27912057", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Di…"}]}, "chetta aa": {"display": "Chetta AA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975734", "pmid": "37728335", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Disentangling the interactions between nasopharyngeal and gut microbiome and their involv…"}]}, "chettout n": {"display": "Chettout N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417283", "pmid": "29988506", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}]}, "chetty vj": {"display": "Chetty VJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1160256", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1456031", "pmid": "42353547", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of selected contaminants on the human gut microbiome tested ex vivo"}]}, "cheung a": {"display": "Cheung A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "cheung cp": {"display": "Cheung CP", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}, {"acc": "PRJNA504921", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA506811", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "HUMAN GUT RECTAL BACTERIA Metagenome"}, {"acc": "PRJNA876804", "pmid": "36357381", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Human Metagenomic Metagenome"}]}, "cheung f": {"display": "Cheung F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "cheung gyc": {"display": "Cheung GYC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA483343", "pmid": "30305736", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "cheung k": {"display": "Cheung K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA353598", "pmid": "28539351", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}]}, "chevallier jm": {"display": "Chevallier JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB23292", "pmid": "29899081", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysbiosis, including decreased gut microbial richness (MGR) and composition modifications…"}]}, "chew s": {"display": "Chew S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA630999", "pmid": "33665175", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA633576", "pmid": "33479326", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}]}, "chhangawala s": {"display": "Chhangawala S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "chi ch": {"display": "Chi CH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA704313", "pmid": "34835435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating sepsis with culture-Independent mNGS"}]}, "chia liu t": {"display": "Chia Liu T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542703", "pmid": "42131447", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}]}, "chia n": {"display": "Chia N", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA312222", "pmid": "27303377", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genome reconstructions from human gut metagenomes"}, {"acc": "PRJNA397219", "pmid": "29704665", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA518922", "pmid": "31577814", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metegenomic sequencing of blood from patients with vector-borne diseases"}]}, "chiang wc": {"display": "Chiang WC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "chiavaroli v": {"display": "Chiavaroli V", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA637785", "pmid": "33346848", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA637785", "pmid": "33985595", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA701480", "pmid": "34186487", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vaginal seeding in babies born by caesarean section (ECOBABe trial) - shotgun metagenomic…"}]}, "chibuye m": {"display": "Chibuye M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "41986657", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "chiesa f": {"display": "Chiesa F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA638876", "pmid": "32983010", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of milk and in-line milk filter"}]}, "chihara d": {"display": "Chihara D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "childhood acute illness and nutrition (chain) network": {"display": "Childhood Acute Illness and Nutrition (CHAIN) Network", "group": true, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "chilengi r": {"display": "Chilengi R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "41986657", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "chiller t": {"display": "Chiller T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}]}, "chilloux j": {"display": "Chilloux J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "chin pj": {"display": "Chin PJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1011899", "pmid": "40155393", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Collaborative spiking study 2B for high throughput sequencing for virus detection"}]}, "ching j": {"display": "Ching J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA715634", "pmid": "34035441", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Novel Strain Level Resolution of Crohns Disease Mucosa-Associated Microbiota via an ex vi…"}]}, "ching jy": {"display": "Ching JY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}]}, "ching jyl": {"display": "Ching JYL", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}, {"acc": "PRJNA353598", "pmid": "28539351", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA504921", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA506811", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "HUMAN GUT RECTAL BACTERIA Metagenome"}, {"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}, {"acc": "PRJNA876804", "pmid": "36357381", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Human Metagenomic Metagenome"}]}, "chintalaphani sr": {"display": "Chintalaphani SR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "chinyama e": {"display": "Chinyama E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62041", "pmid": "37980461", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rotavirus Vaccine Immunogenicity (RoVI) shotgun metagenomics"}]}, "chioma os": {"display": "Chioma OS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA899808", "pmid": "36543914", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Role of the gut microbiome in lung fibrosis"}]}, "chiou j": {"display": "Chiou J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA483343", "pmid": "30305736", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "chiriac mc": {"display": "Chiriac MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884026", "pmid": "36724220", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic investigation of lake Issyk-Kul, Kyrgyzstan"}]}, "chisenga cc": {"display": "Chisenga CC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "41986657", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "chisti mj": {"display": "Chisti MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "chiu c": {"display": "Chiu C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "20143943", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "chiu ch": {"display": "Chiu CH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA936783", "pmid": "35486954", "pos": "last", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Draft genome sequences of Group B Streptococcus isolates from infected infants or children"}]}, "chiu cy": {"display": "Chiu CY", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1188190", "pmid": "37113001", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two…"}, {"acc": "PRJNA171119", "pmid": "20976137", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}, {"acc": "PRJNA171119", "pmid": "21559002", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}, {"acc": "PRJNA171119", "pmid": "21779173", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}, {"acc": "PRJNA234452", "pmid": "24896819", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}, {"acc": "PRJNA644725", "pmid": "32958861", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA916952", "pmid": "36758519", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Stanford's Outcomes Research in Kids (STORK) Virome"}]}, "chiu m": {"display": "Chiu M", "group": false, "n_studies": 31, "studies": [{"acc": "PRJEB12669", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB1786", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB24771", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB32135", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA272371", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA287207", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA321218", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA322188", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA336518", "pmid": "36123315", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA345144", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA362284", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA422434", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422569", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA473126", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA482729", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of native and acetylated high amylose maize starch on fecal pH, short chain fatty…"}, {"acc": "PRJNA486795", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Modification of gut microbiota-bile acid-intestinal FXR signaling leads to the clinical b…"}, {"acc": "PRJNA492716", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA518912", "pmid": "36123315", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA524703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA547717", "pmid": "36123315", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "human oral metagenome Raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA557731", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA562766", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA637878", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA698986", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}]}, "chivall d": {"display": "Chivall D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "chivers p": {"display": "Chivers P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1230889", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}]}, "chivers pt": {"display": "Chivers PT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1230889", "pmid": "42020426", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}]}, "cho j": {"display": "Cho J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11419", "pmid": "38188664", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}]}, "cho ja": {"display": "Cho JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87348", "pmid": "40210629", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "VLP metagenome of Korean gut"}]}, "cho s": {"display": "Cho S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63183", "pmid": "37457984", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Interactions Between Bifidobacterium and Bacteroides and Human Milk Oligosaccharides and…"}]}, "chohan bh": {"display": "Chohan BH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1045584", "pmid": "39185682", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of SARS-CoV-2 in stool sample from women living with HIV and HIV-negative women an…"}]}, "choi b": {"display": "Choi B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA894152", "pmid": "37715296", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Long read infant/young children fecal and environmental samples"}]}, "choi j": {"display": "Choi J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "36220843", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "choi y": {"display": "Choi Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11419", "pmid": "38188664", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}]}, "chokshi s": {"display": "Chokshi S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1307628", "pmid": "41461922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbial oral-gut translocation in advanced chronic liver disease is linked to exacerbat…"}]}, "choksi ya": {"display": "Choksi YA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA986525", "pmid": "38441000", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "2'-fucoysllactose treatment of C57BL/6 adult mice fecal metagenomics"}]}, "chong cyl": {"display": "Chong CYL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA648487", "pmid": "33732655", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}]}, "chong go": {"display": "Chong GO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11419", "pmid": "38188664", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}]}, "chong j": {"display": "Chong J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA925842", "pmid": "36750571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut bacteria glycan metabolism - Raw sequence reads"}]}, "chong kw": {"display": "Chong KW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}]}, "chong mf": {"display": "Chong MF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}]}, "chong ys": {"display": "Chong YS", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "chongsrisawat v": {"display": "Chongsrisawat V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "choo jm": {"display": "Choo JM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA503909", "pmid": "33074097", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "chooi yh": {"display": "Chooi YH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819247", "pmid": "36060782", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome Raw sequence reads"}]}, "chopera d": {"display": "Chopera D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA526942", "pmid": "33137401", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "uncultured crAssphage strain:ZA | isolates :M186D4, C0521BW15,C0526BW15, C0521BD4, and C0…"}]}, "chorlton sd": {"display": "Chorlton SD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1092681", "pmid": "38696336", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Validation of an automated, end-to-end metagenomic sequencing assay for agnostic detectio…"}]}, "chornkrathok c": {"display": "Chornkrathok C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "chotirosniramit a": {"display": "Chotirosniramit A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "choudhury p": {"display": "Choudhury P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945262", "pmid": "37067419", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Gut Microbiome in a mother child paired design"}]}, "choutko v": {"display": "Choutko V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24753", "pmid": "31448292", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Neisseria meningitidis"}]}, "chow epf": {"display": "Chow EPF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "chow eyk": {"display": "Chow EYK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}]}, "chow j": {"display": "Chow J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA240141", "pmid": "25208077", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Elephant feces Metagenome"}, {"acc": "PRJNA240141", "pmid": "36284144", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "chow jm": {"display": "Chow JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177009", "pmid": "40738103", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A human milk oligosaccharide alters the microbiome, circulating hormones, cytokines and m…"}]}, "chow kh": {"display": "Chow KH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA595966", "pmid": "30442907", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C57BL6_NSG_humanFMT"}]}, "chowdhury g": {"display": "Chowdhury G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10675", "pmid": "36376441", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "International collaborative studies on the prevention, diagnosis, and drug discovery for…"}]}, "chowdhury s": {"display": "Chowdhury S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "chowers y": {"display": "Chowers Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA628604", "pmid": "32511695", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}]}, "chown sl": {"display": "Chown SL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA630822", "pmid": "34732568", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA630822", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "chrisman bs": {"display": "Chrisman BS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "34666677", "pos": "first", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": "36220843", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": "37938270", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "christakis na": {"display": "Christakis NA", "group": false, "n_studies": 27, "studies": [{"acc": "PRJEB10878", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB12449", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Reproducibility of associations between the human gut microbiome and colorectal cancer as…"}, {"acc": "PRJEB24041", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Selective maternal seeding and environment shape the human gut microbiome"}, {"acc": "PRJEB32631", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB33500", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Mediterranean diet intervention in overweight and obese subjects leads to multiple benefi…"}, {"acc": "PRJEB35738", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Clostridium difficile infection patient microbiome"}, {"acc": "PRJEB37249", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Statin therapy is associated with lower prevalence of gut microbiota dysbiosis"}, {"acc": "PRJEB38742", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Imidazole propionate is increased in diabetes and associated with dietary patterns and al…"}, {"acc": "PRJEB45799", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB6070", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6456", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6997", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut and Oral Microbiome Dysbiosis in Rheumatoid Arthritis"}, {"acc": "PRJEB7774", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB9584", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "KCL_twins2"}, {"acc": "PRJNA1019702", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA398089", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA422434", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA447983", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}, {"acc": "PRJNA48479", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA564397", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics Reveals Impact of Geography, Antibiotics and Acute Diarrhoeal Disease on the…"}, {"acc": "PRJNA674880", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Microbiota Restoration Reduces Antibiotic Resistant Bacteria Gut Colonization in Patients…"}, {"acc": "PRJNA685168", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Multi-omics suggest diverse mechanisms for response to biologic therapies in IBD"}, {"acc": "PRJNA705895", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA748262", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}, {"acc": "PRJNA752686", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Profile of the Gut Microbiome of Preterm Infants and its Association to Infan…"}, {"acc": "PRJNA999635", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut Microbiome of isolated villages in rural Honduras"}]}, "christensen bc": {"display": "Christensen BC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "29973274", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "36777525", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "37138613", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "christensen l": {"display": "Christensen L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36898", "pmid": "33629506", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics analysis on overweight subjects under a caloric restriction intervention with…"}]}, "christenson sa": {"display": "Christenson SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "christians fc": {"display": "Christians FC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "christner m": {"display": "Christner M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1775", "pmid": "23571589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diagnostic Metagenomics: A Culture-Independent Approach to the Investigation of Bacterial…"}]}, "christophersen ct": {"display": "Christophersen CT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1452547", "pmid": "42129350", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chlorinated Water Effects on Infant Gut Microbiota"}]}, "chu cw": {"display": "Chu CW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "chu h": {"display": "Chu H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}]}, "chu mljn": {"display": "Chu MLJN", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA555020", "pmid": "31676793", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "36380002", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA613032", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life and effects of early life antibiotics, annotated shotgun s…"}, {"acc": "PRJNA613054", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal resistome in early life and effects of early life antibiotics, annotated shotgun se…"}]}, "chu x": {"display": "Chu X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA818432", "pmid": "35783441", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Raw sequence reads"}]}, "chua hh": {"display": "Chua HH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1056831", "pmid": "39006502", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota of infant cholestasis in Taiwan"}]}, "chua mc": {"display": "Chua MC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}, {"acc": "PRJNA947616", "pmid": "37974294", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome and bloodstream infections among premature infants in Singapore"}]}, "chuck-hernandez c": {"display": "Chuck-Hernández C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1260751", "pmid": "41536238", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal Obesity Alters Human Milk Oligosaccharides Content and Promotes Early Acquisitio…"}]}, "chueca n": {"display": "Chueca N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55075", "pmid": "38524774", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Molecular and phylogenetic characterization of the monkeypox outbreak in Andalusia, Spain"}]}, "chuihui y": {"display": "Chuihui Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6972", "pmid": "25491920", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The microbial colonization of the intestine during the first monthsof life constitutes th…"}]}, "chung hk": {"display": "Chung HK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA683873", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Severe acute respiratory syndrome coronavirus 2 Genome sequencing"}]}, "cian a": {"display": "Cian A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27005", "pmid": "30726303", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}]}, "cibella j": {"display": "Cibella J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA615842", "pmid": "33494335", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}]}, "ciciani m": {"display": "Ciciani M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1140720", "pmid": "41565819", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Modelling human microbiome transmission in a nursery setting"}]}, "cimino ro": {"display": "Cimino RO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "cinco ir": {"display": "Cinco IR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB5224", "pmid": "38182754", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}]}, "cinek o": {"display": "Cinek O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445932", "pmid": "29297933", "pos": "first", "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA445932", "pmid": "30121305", "pos": "first", "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}]}, "ciociola t": {"display": "Ciociola T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975734", "pmid": "37728335", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Disentangling the interactions between nasopharyngeal and gut microbiome and their involv…"}]}, "cipollini g": {"display": "Cipollini G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}]}, "cisek k": {"display": "Cisek K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42304", "pmid": "31843589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differences in Fecal Microbiomes and Metabolomes of People With vs Without Irritable Bowe…"}]}, "civera t": {"display": "Civera T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA638876", "pmid": "32983010", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of milk and in-line milk filter"}]}, "ckd-rein study collaborators": {"display": "CKD-REIN Study collaborators", "group": true, "n_studies": 1, "studies": [{"acc": "PRJEB81434", "pmid": "40461059", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "claesson mj": {"display": "Claesson MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352475", "pmid": "36420990", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "clancy cj": {"display": "Clancy CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA475137", "pmid": "33245689", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhizopus oryzae Genome sequencing and assembly"}]}, "clare s": {"display": "Clare S", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA400115", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}, {"acc": "PRJNA806984", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}, {"acc": "PRJNA994433", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Variability of Bifidobacterium Species in the Infant Gut is Independent of M…"}]}, "clares i": {"display": "Clares I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}]}, "clark a": {"display": "Clark A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA438436", "pmid": "31270376", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The gut microbiota influence the basal physiological parameters in equine athletes"}]}, "clark jl": {"display": "Clark JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA836336", "pmid": "36179550", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenome of MSM prior to and following HIV seroconversion"}]}, "clark md": {"display": "Clark MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22207", "pmid": "31844297", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}]}, "clark rm": {"display": "Clark RM", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1173239", "pmid": "40763731", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Amino acid competition shapes Acinetobacter baumannii gut carriage"}]}, "clark sa": {"display": "Clark SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019894", "pmid": "37835668", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Bos taurus breed:Angus Targeted Locus (Loci)"}]}, "clark ta": {"display": "Clark TA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "clarke el": {"display": "Clarke EL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA451186", "pmid": "30376898", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Placenta Microbiome"}]}, "clarke g": {"display": "Clarke G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44042", "pmid": "34252569", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Kefir ameliorates specific microbiota-gut-brain axis impairments in a mouse model relevan…"}]}, "clarke m": {"display": "Clarke M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "clarke p": {"display": "Clarke P", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB14935", "pmid": "29096601", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Term and preterm shotgun samples"}, {"acc": "PRJEB22207", "pmid": "31844297", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJNA1191223", "pmid": "40813371", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of early life antibiotic and probiotic treatment on gut microbiome and resistome o…"}, {"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA63661", "pmid": "32436839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "clarke tb": {"display": "Clarke TB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60914", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Roles of gut microbiota-mediated nutrient competition and metabolite inhibition in the in…"}]}, "claud ec": {"display": "Claud EC", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}, {"acc": "PRJNA1236379", "pmid": "40886152", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Infant BBB"}, {"acc": "PRJNA895372", "pmid": "38303501", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiome function and neurodevelopment in Black infants: Vitamin B12 biosynthesis emerg…"}]}, "claus s": {"display": "Claus S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB25727", "pmid": "31138673", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The impact of AXOS intake in overweight individuals with metabolic syndrome."}]}, "clausen l": {"display": "Clausen L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}]}, "clavaud c": {"display": "Clavaud C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA478488", "pmid": "32591010", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Chinese human skin metagenome"}]}, "clavel t": {"display": "Clavel T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}]}, "clemency nc": {"display": "Clemency NC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417283", "pmid": "29988506", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}]}, "clemenson c": {"display": "Clémenson C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}, {"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "clement k": {"display": "Clément K", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB23292", "pmid": "29899081", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysbiosis, including decreased gut microbial richness (MGR) and composition modifications…"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB4413", "pmid": "23985875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary intervention impact on gut microbial gene richness based on SOLiD next generation…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJNA728908", "pmid": "35675435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of baseline individuals in a 4.6-year non-alcoholic fatty liver disease pr…"}]}, "clement p": {"display": "Clement P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "clemente jc": {"display": "Clemente JC", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}, {"acc": "PRJNA1320699", "pmid": "42088498", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "16S sequencing of infant stool Metagenome"}, {"acc": "PRJNA1420872", "pmid": "41027803", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of gut/stool samples Metagenome"}, {"acc": "PRJNA245336", "pmid": "26229982", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}]}, "clementi r": {"display": "Clementi R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}]}, "clermont o": {"display": "Clermont O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45090", "pmid": "39665373", "pos": "last", "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "ED Gut"}]}, "cleveland k": {"display": "Cleveland K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA297869", "pmid": "26614063", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human gastric microbiome metagenome"}]}, "clifton vl": {"display": "Clifton VL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1076911", "pmid": "38995243", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant and maternal gut microbiomes"}]}, "climent e": {"display": "Climent E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52748", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome function and composition in infants from rural Kenya and association with…"}, {"acc": "PRJEB6456", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "clise-dwyer k": {"display": "Clise-Dwyer K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "clish c": {"display": "Clish C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA685168", "pmid": "34297922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics suggest diverse mechanisms for response to biologic therapies in IBD"}]}, "cloherty ga": {"display": "Cloherty GA", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1079728", "pmid": "38655084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Next-generation sequencing survey of acute febrile illness in Senegal (2020-2022)"}, {"acc": "PRJNA1150154", "pmid": "39251076", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}, {"acc": "PRJNA1188190", "pmid": "37113001", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two…"}, {"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}, {"acc": "PRJNA789273", "pmid": "34960803", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Emergence of a Distinct Picobirnavirus Genotype Circulating in Patients Hospitalized with…"}]}, "clopper br": {"display": "Clopper BR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "clucas d": {"display": "Clucas D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39143045", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}, {"acc": "PRJNA1081952", "pmid": "39367018", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "clurman ag": {"display": "Clurman AG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "coakley m": {"display": "Coakley M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}]}, "coates n": {"display": "Coates N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB82926", "pmid": "40431157", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic Supplementation Impacts Gut Microbiota Development in Infants at Risk of Atopy:…"}]}, "cobo-diaz jf": {"display": "Cobo-Díaz JF", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39407346", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "cocolin l": {"display": "Cocolin L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA636619", "pmid": "34053518", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome (DNAseq) of italian fermented sausages"}]}, "codreanu gs": {"display": "Codreanu GS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA986525", "pmid": "38441000", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "2'-fucoysllactose treatment of C57BL/6 adult mice fecal metagenomics"}]}, "coelho l": {"display": "Coelho L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "coelho lp": {"display": "Coelho LP", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB20308", "pmid": "29669589", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Similarity of the dog and human gut microbiomes in gene content and response to diet"}, {"acc": "PRJEB24041", "pmid": "29496731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Selective maternal seeding and environment shape the human gut microbiome"}, {"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJNA289586", "pmid": "30747106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA300541", "pmid": "35484115", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA504891", "pmid": "35484115", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "36376928", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "coen m": {"display": "Coen M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21816", "pmid": "30991963", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Listeria monocytogenes abdominal periaortitis"}]}, "cogdill ap": {"display": "Cogdill AP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "cohen ba": {"display": "Cohen BA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45356", "pmid": "42014682", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}]}, "cohen k": {"display": "Cohen K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "cohen l": {"display": "Cohen L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "cohen y": {"display": "Cohen Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "36464700", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "coia v": {"display": "Coia V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}]}, "coimbra a": {"display": "Coimbra A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA847605", "pmid": "36565815", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosa…"}]}, "cokelaer t": {"display": "Cokelaer T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "coker m": {"display": "Coker M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "30135504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "coker mo": {"display": "Coker MO", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA296814", "pmid": "34215179", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35568730", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35906254", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA695570", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "coker oo": {"display": "Coker OO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA905328", "pmid": "37904586", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut microbes sequencing"}]}, "colaizzi p": {"display": "Colaizzi P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA655381", "pmid": "33329475", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome of drawings by Leonardo Da Vinci"}]}, "colberg o": {"display": "Colberg O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1159139", "pmid": "39377603", "pos": "first", "reason_code": "host_synthetic", "src": "L", "status": "excluded", "title_short": "I-TIM-2 validation (VAL)"}]}, "colbert le": {"display": "Colbert LE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "cole cg": {"display": "Cole CG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB102033", "pmid": "41330369", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lantibiotic-producing bacteria impact microbiome resilience and colonization resistance"}]}, "cole nl": {"display": "Cole NL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1445932", "pmid": "42669658", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of a complementary feeding intervention on the gut microbiota in 12-18-month- old…"}]}, "cole st": {"display": "Cole ST", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "colebunders r": {"display": "Colebunders R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1088476", "pmid": "40321713", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Cameroonian blackflies (Diptera: Simuliidae) harbour a plethora of (RNA) viruses"}]}, "coleman jp": {"display": "Coleman JP", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "coleman nv": {"display": "Coleman NV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130617", "pmid": "41505541", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}]}, "coles e": {"display": "Coles E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}]}, "colinet as": {"display": "Colinet AS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1011899", "pmid": "40155393", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Collaborative spiking study 2B for high throughput sequencing for virus detection"}]}, "collado cm": {"display": "Collado CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "collado mc": {"display": "Collado MC", "group": false, "n_studies": 17, "studies": [{"acc": "PRJEB15371", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB6456", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB71847", "pmid": "38785596", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Gut and respiratory tract microbiota in children younger than 12 months hospitalised for…"}, {"acc": "PRJEB74322", "pmid": "38870906", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJEB74322", "pmid": "40603287", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJNA1227883", "pmid": "31053102", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}, {"acc": "PRJNA1227883", "pmid": "40603287", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}, {"acc": "PRJNA231909", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "30661755", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA48479", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA504891", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "collier f": {"display": "Collier F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36405", "pmid": "34603219", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Study of the bacterial resistome in people and animals from Australia"}]}, "collins n": {"display": "Collins N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28302791", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "collins sl": {"display": "Collins SL", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA412411", "pmid": "34163067", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "cologna m": {"display": "Cologna M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}]}, "colombel jf": {"display": "Colombel JF", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA946744", "pmid": "39666007", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Homo sapiens metagenomic sequences"}, {"acc": "PRJNA975184", "pmid": "39474439", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "colombo apv": {"display": "Colombo APV", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA396275", "pmid": "29988721", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Association between oral and gut microbiota in Periodontal Disease"}, {"acc": "PRJNA846723", "pmid": "39527605", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of oral administration of Bifidobacterium animalis subsp. lactis HN019 on the tre…"}]}, "colomer-castell s": {"display": "Colomer-Castell S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "colucci a": {"display": "Colucci A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "colwell r": {"display": "Colwell R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "colwell rr": {"display": "Colwell RR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417283", "pmid": "29988506", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}]}, "comas i": {"display": "Comas I", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB74322", "pmid": "40603287", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJNA1227883", "pmid": "40603287", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}]}, "combat consortium": {"display": "COMBAT Consortium", "group": true, "n_studies": 1, "studies": [{"acc": "PRJNA688274", "pmid": "34092249", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Netherland Travelers"}]}, "combes aj": {"display": "Combes AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "combremont s": {"display": "Combremont S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB42539", "pmid": "34756056", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "FUT2/FUT3 genes sequences and nasopharyngeal shotgun metagenomics from the Microbiota and…"}, {"acc": "PRJNA707065", "pmid": "35075183", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "NiPPeR Study - pilot microbiome investigation"}]}, "compte r": {"display": "Compte R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA957107", "pmid": "38291926", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Imrabiome - Rheumatoid project"}]}, "comstock ss": {"display": "Comstock SS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "38782975", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB46659", "pmid": "41265504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "comtet t": {"display": "Comtet T", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "cona a": {"display": "Cona A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1294276", "pmid": "41019762", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human pegivirus isolate Pegi-ITA-25, complete genome."}]}, "conaldi pg": {"display": "Conaldi PG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1294276", "pmid": "41019762", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human pegivirus isolate Pegi-ITA-25, complete genome."}]}, "conceicao-neto n": {"display": "Conceição-Neto N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344863", "pmid": "27666390", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral Metagenomics of fecal samples of fruit bats"}]}, "condamine b": {"display": "Condamine B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45090", "pmid": "39665373", "pos": "first", "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "ED Gut"}, {"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "conde m": {"display": "Condé M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "conde s": {"display": "Conde S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "cone m": {"display": "Cone M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27932649", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "cone mr": {"display": "Cone MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "cong z": {"display": "Cong Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA856701", "pmid": "36165604", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin microbiome of forehead in children with and without acne"}]}, "conlan s": {"display": "Conlan S", "group": false, "n_studies": 9, "studies": [{"acc": "PRJNA1156457", "pmid": "39731681", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acanthamoeba sequencing"}, {"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}, {"acc": "PRJNA1369410", "pmid": "42242497", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics sequencing from patients with CD4 lymphopenia"}, {"acc": "PRJNA445389", "pmid": "30586509", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Sphingomonas koreensis Genome sequencing and assembly"}, {"acc": "PRJNA46333", "pmid": "22310478", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "23050952", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "23698366", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "25279917", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "28679656", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "37054678", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA471898", "pmid": "30397357", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The skin microbiome of DOCK8-deficient patients"}, {"acc": "PRJNA542320", "pmid": "31700190", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacteria Genome sequencing and assembly"}, {"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "conlon ca": {"display": "Conlon CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA637785", "pmid": "33346848", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA637785", "pmid": "33985595", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}]}, "conner m": {"display": "Conner M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "connor ba": {"display": "Connor BA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}]}, "connor p": {"display": "Connor P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945408", "pmid": "38085102", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prev…"}]}, "connors j": {"display": "Connors J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29237", "pmid": "30838178", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}]}, "consegal m": {"display": "Consegal M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1171764", "pmid": "40524271", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut metagenome of IBD patients and healthy controls"}]}, "consolandi c": {"display": "Consolandi C", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA278393", "pmid": "25981789", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA525982", "pmid": "30948795", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transpl…"}, {"acc": "PRJNA615842", "pmid": "33494335", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}, {"acc": "PRJNA643802", "pmid": "32859933", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "FMT for diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal…"}]}, "constancias f": {"display": "Constancias F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396840", "pmid": "28979798", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomic and metatranscriptomic analysis of saliva reveals disease-associated microbio…"}]}, "constantinidou c": {"display": "Constantinidou C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1775", "pmid": "23571589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diagnostic Metagenomics: A Culture-Independent Approach to the Investigation of Bacterial…"}]}, "conteville lc": {"display": "Conteville LC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA527208", "pmid": "31417531", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA527208", "pmid": "32339065", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA527208", "pmid": "35840779", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA987743", "pmid": "38163076", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Ruminal and Fecal Microbiomes of Brazilian Nelore Cattle"}, {"acc": "PRJNA987743", "pmid": "39695297", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Ruminal and Fecal Microbiomes of Brazilian Nelore Cattle"}]}, "contreras l": {"display": "Contreras L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA390646", "pmid": "31423298", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}]}, "contreras ln": {"display": "Contreras LN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA390646", "pmid": "29242832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}]}, "contreras m": {"display": "Contreras M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}]}, "conwill a": {"display": "Conwill A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1052084", "pmid": "38260404", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intraspecies dynamics underlie the apparent stability of two important skin microbiome sp…"}, {"acc": "PRJNA1052084", "pmid": "40315837", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intraspecies dynamics underlie the apparent stability of two important skin microbiome sp…"}]}, "cook l": {"display": "Cook L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "27974546", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28100494", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29554870", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "cook pl": {"display": "Cook PL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "cooley l": {"display": "Cooley L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "cools p": {"display": "Cools P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "cools-portier s": {"display": "Cools-Portier S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA145005", "pmid": "22030749", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}]}, "coombes jl": {"display": "Coombes JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA935534", "pmid": "37700351", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Calf microbiome features associated with susceptibility to C.parvum infection"}]}, "coope r": {"display": "Coope R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1092681", "pmid": "38696336", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Validation of an automated, end-to-end metagenomic sequencing assay for agnostic detectio…"}]}, "cooper kk": {"display": "Cooper KK", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA834762", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "38427700", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA837236", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "38427700", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA912682", "pmid": "38272215", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "38427700", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "39727415", "pos": "first", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}]}, "cooper ma": {"display": "Cooper MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA313232", "pmid": "27388460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteroidales group S24-7 population genome recovery"}]}, "cooper mn": {"display": "Cooper MN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1452547", "pmid": "42129350", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chlorinated Water Effects on Infant Gut Microbiota"}]}, "cooper vs": {"display": "Cooper VS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081394", "pmid": "38564694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sinus, throat, and sputum airway microbiology in cystic fibrosis"}]}, "cope j": {"display": "Cope J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46337", "pmid": "28274256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}]}, "coque tm": {"display": "Coque TM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}]}, "corander j": {"display": "Corander J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB21259", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}, {"acc": "PRJEB32631", "pmid": "36456554", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "42032281", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB47909", "pmid": "42032281", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "FMT datasets of patients with recurrent Clostridioides difficile infection (rCDI), inflam…"}]}, "corbeil j": {"display": "Corbeil J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "corbett ga": {"display": "Corbett GA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "39365058", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "corbin kr": {"display": "Corbin KR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA722408", "pmid": "36076058", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}, {"acc": "PRJNA722408", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}]}, "corcoran s": {"display": "Corcoran S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "39365058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "cordeiro r": {"display": "Cordeiro R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "35750157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "36131032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "cordero f": {"display": "Cordero F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "cordero ox": {"display": "Cordero OX", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1107349", "pmid": "38980166", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Polysaccharide degradation by microbial communities"}]}, "cordioli m": {"display": "Cordioli M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB121228", "pmid": "38793608", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}]}, "cordova b": {"display": "Cordova B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}]}, "cornacchione l": {"display": "Cornacchione L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "cornejo-granados f": {"display": "Cornejo-Granados F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA721692", "pmid": "36786619", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "METAGENOMIC ANALYSIS OF MEXICAN CHILDHOOD GUT MICROBIOTA"}]}, "cornick j": {"display": "Cornick J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63570", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Klebsiella_transmission_and_immunity_on_Chatinkha_nursery__Neo_TRACK_"}]}, "cornu hewitt b": {"display": "Cornu Hewitt B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1049329", "pmid": "39315772", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human oropharyngeal resistome of COPD cases and controls using ResCap"}]}, "cornwell e": {"display": "Cornwell E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "corona-cervantes k": {"display": "Corona-Cervantes K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1260751", "pmid": "41536238", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal Obesity Alters Human Milk Oligosaccharides Content and Promotes Early Acquisitio…"}]}, "corral-frias mp": {"display": "Corral-Frias MP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821920", "pmid": "41782637", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mental Health Screening for Babies. What can we learn from infant and caregiver behaviors…"}]}, "corrales-aguilar e": {"display": "Corrales-Aguilar E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1055141", "pmid": "42336834", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool shallow shotgun sequencing (ANTIBIO)"}]}, "correia i": {"display": "Correia I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "corrias mv": {"display": "Corrias MV", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB63351", "pmid": "38104504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neuroblastoma is associated with alterations in gut microbiome composition subsequent to…"}, {"acc": "PRJEB6456", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "corrigan m": {"display": "Corrigan M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA772730", "pmid": "35071138", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The FOUNDATION Study: Hospital Formulation Of B. infantis EVC001 Utilized In The NICU To…"}]}, "corsetti fa": {"display": "Corsetti FA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB10054", "pmid": "25212621", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "The 2014 and 2015 International Geobiology Courses took place at Little Hot Creek (LHC),…"}]}, "cortese a": {"display": "Cortese A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "cortese mf": {"display": "Cortese MF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "cortesi f": {"display": "Cortesi F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "corwin e": {"display": "Corwin E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA747761", "pmid": "37938667", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Atlanta, USA and Maputo, Mozambique Children gut microbiome Metagenome"}]}, "corwin ej": {"display": "Corwin EJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA725416", "pmid": "33996627", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Emory University African American Vaginal, Oral, and Gut Microbiome in Pregnancy Cohort S…"}]}, "cosentino mac": {"display": "Cosentino MAC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA847605", "pmid": "36565815", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosa…"}]}, "cosic a": {"display": "Cosic A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA63661", "pmid": "41250602", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "cossa a": {"display": "Cossa A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "costa-mattioli m": {"display": "Costa-Mattioli M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}]}, "costea p": {"display": "Costea P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24041", "pmid": "29496731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Selective maternal seeding and environment shape the human gut microbiome"}]}, "costea pi": {"display": "Costea PI", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB12357", "pmid": "27126044", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB20308", "pmid": "29669589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Similarity of the dog and human gut microbiomes in gene content and response to diet"}, {"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}, {"acc": "PRJEB46778", "pmid": "27126044", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}, {"acc": "PRJNA289586", "pmid": "30747106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}]}, "costeira r": {"display": "Costeira R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB30955", "pmid": "30625669", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic Characterization of Viral and Bacterial Communities in Groundwater Associated…"}]}, "costello ek": {"display": "Costello EK", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB20471", "pmid": "20231444", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Forensic identification using skin bacterial communities - keyboard"}, {"acc": "PRJEB20500", "pmid": "20231444", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Forensic identification using skin bacterial communities - mouse"}, {"acc": "PRJNA288562", "pmid": "26283357", "pos": null, "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}, {"acc": "PRJNA290380", "pmid": "32728114", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA362245", "pmid": "24169577", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Microbiome assembly across multiple body sites in low-birthweight infants"}, {"acc": "PRJNA362245", "pmid": "28630471", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Microbiome assembly across multiple body sites in low-birthweight infants"}, {"acc": "PRJNA60717", "pmid": "21191099", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomic analysis of infant stool sample"}, {"acc": "PRJNA61745", "pmid": "21191099", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Strain-resolved community genomic analysis of gut microbial colonization in a premature i…"}, {"acc": "PRJNA726636", "pmid": "35382031", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sea otter (Enhydra lutris) Raw sequence reads"}]}, "cotillard a": {"display": "Cotillard A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB34992", "pmid": "33771219", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet and gut microbiome interactions of relevance for symptoms in irritable bowel syndrome"}, {"acc": "PRJEB4413", "pmid": "23985875", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary intervention impact on gut microbial gene richness based on SOLiD next generation…"}]}, "cotter pd": {"display": "Cotter PD", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB44042", "pmid": "34252569", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Kefir ameliorates specific microbiota-gut-brain axis impairments in a mouse model relevan…"}, {"acc": "PRJEB48251", "pmid": "37230981", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJEB48251", "pmid": "39365058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJEB48251", "pmid": "40755225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJNA422569", "pmid": "30126456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "cottingham kl": {"display": "Cottingham KL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "30135504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "cotugno n": {"display": "Cotugno N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1013917", "pmid": "37965266", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Gut microbiota of an immunocompromised child with chronic cryptosporidiosis"}]}, "couderc c": {"display": "Couderc C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "coughlan s": {"display": "Coughlan S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42304", "pmid": "31843589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differences in Fecal Microbiomes and Metabolomes of People With vs Without Irritable Bowe…"}]}, "coughlin la": {"display": "Coughlin LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA311208", "pmid": "27406942", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Severe gut microbiota dysbiosis is associated with poor growth in patients with short bow…"}]}, "couoh lr": {"display": "Couoh LR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "couper jj": {"display": "Couper JJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}]}, "couppie p": {"display": "Couppié P", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}, {"acc": "PRJNA371487", "pmid": "28715422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Leishmania RNA Virus Genomics'' study from French Guiana"}]}, "courtois a": {"display": "Courtois A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1104421", "pmid": "39078043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Serum Bile Acids profiles are altered without change of the Gut Microbiota composition fo…"}, {"acc": "PRJNA1111312", "pmid": "39895875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun metagenomics reveals Bacteroides stercoris as a fecal biomarker depleted in late-…"}]}, "coutinho ll": {"display": "Coutinho LL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA987743", "pmid": "38163076", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Ruminal and Fecal Microbiomes of Brazilian Nelore Cattle"}, {"acc": "PRJNA987743", "pmid": "39695297", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Ruminal and Fecal Microbiomes of Brazilian Nelore Cattle"}]}, "coutinho pm": {"display": "Coutinho PM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA49397", "pmid": "20962874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Canine gastrointestinal metagenome"}]}, "couto-rodriguez m": {"display": "Couto-Rodriguez M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}]}, "coutsoudis a": {"display": "Coutsoudis A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA549787", "pmid": "31832638", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}]}, "couture g": {"display": "Couture G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}]}, "cowan da": {"display": "Cowan DA", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA630822", "pmid": "34732568", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA630822", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}, {"acc": "PRJNA930765", "pmid": "36869137", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia felis reads and MAG recovered from a child who lived in southern Africa 2000 y…"}]}, "cowieson aj": {"display": "Cowieson AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA237795", "pmid": "35583332", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Swine feces Targeted Locus (Loci)"}]}, "cowles k": {"display": "Cowles K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522699", "pmid": "31427729", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}]}, "cox cj": {"display": "Cox CJ", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "cox m": {"display": "Cox M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}]}, "coxhead j": {"display": "Coxhead J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49383", "pmid": "36163498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm Neonatal Stool Metagenomes"}]}, "cozer t": {"display": "Cozer T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA661164", "pmid": "33904706", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Treated Wastewater and Soil Meta-genomic Samples"}]}, "crabtree j": {"display": "Crabtree J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA275349", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA48479", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "craig jm": {"display": "Craig JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA383868", "pmid": "28910633", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "30482830", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "32409670", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}]}, "craig me": {"display": "Craig ME", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}]}, "craine n": {"display": "Craine N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1235110", "pmid": "39798461", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome"}]}, "cramb s": {"display": "Cramb S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}]}, "cramer h": {"display": "Cramer H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}]}, "crandall w": {"display": "Crandall W", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}]}, "crane m": {"display": "Crane M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}]}, "craparotta i": {"display": "Craparotta I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1168703", "pmid": "38485093", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of an epilepsy-linked gut microbiota signature in a pediatric rat model of…"}]}, "crawford jm": {"display": "Crawford JM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA390646", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA633576", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}]}, "crawford k": {"display": "Crawford K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "30576430", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "crawford rl": {"display": "Crawford RL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28254976", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "creagh c": {"display": "Creagh C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701480", "pmid": "34186487", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vaginal seeding in babies born by caesarean section (ECOBABe trial) - shotgun metagenomic…"}]}, "creasy hh": {"display": "Creasy HH", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA275349", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA48479", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "creevey cj": {"display": "Creevey CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8939", "pmid": "28085156", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of Rumen microbiomes reveals the functional isoforms driving microbi…"}]}, "cregeen sj": {"display": "Cregeen SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1224818", "pmid": "38361816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with n…"}]}, "crespo mc": {"display": "Crespo MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "cresta m": {"display": "Cresta M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1004259", "pmid": "38047654", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic and Amplicon-based Nanopore Sequencing of French Human Monkeypox direct from…"}]}, "crhanova m": {"display": "Crhanova M", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB12124", "pmid": "38652229", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-dependent stratification of patients for anti-diabetic treatment"}, {"acc": "PRJNA563062", "pmid": "38652229", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Capybara (Hydrochoerus hydrochaeris) Metagenome"}, {"acc": "PRJNA684904", "pmid": "38652229", "pos": "last", "reason_code": null, "src": "L", "status": "human_review", "title_short": "human gut metagenome Genome sequencing and assembly"}, {"acc": "PRJNA747761", "pmid": "38652229", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Atlanta, USA and Maputo, Mozambique Children gut microbiome Metagenome"}]}, "crider ys": {"display": "Crider YS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726052", "pmid": "35422497", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effects of drinking water chlorination on childrens intestinal flora and resistomes in Dh…"}]}, "crifo t": {"display": "Crifò T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}]}, "crispie f": {"display": "Crispie F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44042", "pmid": "34252569", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Kefir ameliorates specific microbiota-gut-brain axis impairments in a mouse model relevan…"}]}, "criswell rl": {"display": "Criswell RL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "36777525", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "crits-christoph a": {"display": "Crits-Christoph A", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA273761", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA376566", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA396794", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA60717", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analysis of infant stool sample"}, {"acc": "PRJNA698986", "pmid": "34622230", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA698986", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}]}, "crittenden an": {"display": "Crittenden AN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA278393", "pmid": "25981789", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}]}, "croarkin pe": {"display": "Croarkin PE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821920", "pmid": "41782637", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mental Health Screening for Babies. What can we learn from infant and caregiver behaviors…"}]}, "cronk b": {"display": "Cronk B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA667736", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Milk Metagenome Anomaly Detection Project"}]}, "crook dw": {"display": "Crook DW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "34609275", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "cross g": {"display": "Cross G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1235110", "pmid": "39798461", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome"}]}, "cross jr": {"display": "Cross JR", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA259179", "pmid": "25337874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Studies of intestinal microbiome and infection resistance"}, {"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}, {"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "cross tl": {"display": "Cross TL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657304", "pmid": "33542301", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun Sequencing of Dog Coprolites"}]}, "crossette e": {"display": "Crossette E", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1071720", "pmid": "38572716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FECBUD Study Fecal Metagenomes"}, {"acc": "PRJNA1121316", "pmid": "39747680", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}, {"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "crossette em": {"display": "Crossette EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1463324", "pmid": "41342324", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "VE202 phase 1 stool metagenomes"}]}, "crossman dk": {"display": "Crossman DK", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB32631", "pmid": "32431894", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA288562", "pmid": "32431894", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}, {"acc": "PRJNA593263", "pmid": "32431894", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Feces metagenome"}]}, "crouch l": {"display": "Crouch L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1230889", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}]}, "crouch li": {"display": "Crouch LI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1230889", "pmid": "42020426", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}]}, "crovetto a": {"display": "Crovetto A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB67641", "pmid": "38709303", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental Plaque Microbiota Sequence Counts for Microbial Profiling and Resistance Genes Det…"}]}, "crowgey el": {"display": "Crowgey EL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542703", "pmid": "35310842", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}]}, "crowley jl": {"display": "Crowley JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28379561", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "crowley mr": {"display": "Crowley MR", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB32631", "pmid": "32431894", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA288562", "pmid": "32431894", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}, {"acc": "PRJNA593263", "pmid": "32431894", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Feces metagenome"}]}, "croyal m": {"display": "Croyal M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1104421", "pmid": "39078043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Serum Bile Acids profiles are altered without change of the Gut Microbiota composition fo…"}]}, "crubezy e": {"display": "Crubézy E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41240", "pmid": "33434506", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Heterogeneous hunter-gatherer and steppe-related ancestries in Late Neolithic and Bell Be…"}]}, "cruz ar": {"display": "Cruz AR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "cruz ayala w": {"display": "Cruz Ayala W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895372", "pmid": "38303501", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiome function and neurodevelopment in Black infants: Vitamin B12 biosynthesis emerg…"}]}, "cruz k": {"display": "Cruz K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1066815", "pmid": "38963827", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human rhinovirus A, B and C in Washington State"}, {"acc": "PRJNA723895", "pmid": "38963827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Rhinovirus NGS"}]}, "cruz m": {"display": "Cruz M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA721692", "pmid": "36786619", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "METAGENOMIC ANALYSIS OF MEXICAN CHILDHOOD GUT MICROBIOTA"}]}, "cruz-gil s": {"display": "Cruz-Gil S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "cruz-morales p": {"display": "Cruz-Morales P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA992639", "pmid": "38876584", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Novel misos shape distinct microbial ecologies"}]}, "cryan jf": {"display": "Cryan JF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44042", "pmid": "34252569", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Kefir ameliorates specific microbiota-gut-brain axis impairments in a mouse model relevan…"}]}, "csabai i": {"display": "Csabai I", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA591315", "pmid": "32366826", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "raw milk metagenome"}, {"acc": "PRJNA644779", "pmid": "33384459", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "yogurt and kefir seed culture sequencing"}]}, "cuadros-orellana s": {"display": "Cuadros-Orellana S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "40131312", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "cucca f": {"display": "Cucca F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "cucchiara s": {"display": "Cucchiara S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "cuellar-rodriguez j": {"display": "Cuellar-Rodriguez J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156457", "pmid": "39731681", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acanthamoeba sequencing"}]}, "cuesta t": {"display": "Cuesta T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}]}, "cui k": {"display": "Cui K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA741606", "pmid": "38254181", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Rumen content metagenome of goat kids"}]}, "cui l": {"display": "Cui L", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB18471", "pmid": "41695140", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamics of the gut microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA398187", "pmid": "41695140", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Targeted loci environmental"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "cui w": {"display": "Cui W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA973819", "pmid": "38188910", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Pathogenetic characterization of a Micrococcus luteus strain isolated from an infant"}]}, "cui x": {"display": "Cui X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA901878", "pmid": "37120646", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "cui y": {"display": "Cui Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA801796", "pmid": "37482605", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Upper respiratory tract virus infection alters the host microbial feature"}, {"acc": "PRJNA986854", "pmid": "40467587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "stool sample of paired mother-infant for 16S rRNA sequencing analysis"}]}, "cullin n": {"display": "Cullin N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "cumbie r": {"display": "Cumbie R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA475137", "pmid": "33245689", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhizopus oryzae Genome sequencing and assembly"}]}, "cumbo f": {"display": "Cumbo F", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB63351", "pmid": "38104504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neuroblastoma is associated with alterations in gut microbiome composition subsequent to…"}, {"acc": "PRJEB6456", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA504891", "pmid": "32427907", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "cumming o": {"display": "Cumming O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1355224", "pmid": "42037384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human metagenomic samples Metagenome"}]}, "cunanan k": {"display": "Cunanan K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177009", "pmid": "40738103", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A human milk oligosaccharide alters the microbiome, circulating hormones, cytokines and m…"}]}, "cunliffe m": {"display": "Cunliffe M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "cunningham ck": {"display": "Cunningham CK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "cunningham i": {"display": "Cunningham I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1420872", "pmid": "41027803", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of gut/stool samples Metagenome"}]}, "cunningham-oakes e": {"display": "Cunningham-Oakes E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62041", "pmid": "37980461", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Rotavirus Vaccine Immunogenicity (RoVI) shotgun metagenomics"}]}, "cuoji a": {"display": "Cuoji A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1029896", "pmid": "39227902", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}]}, "curico huansi ge": {"display": "Curico Huansi GE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA834762", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA837236", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}]}, "currie cr": {"display": "Currie CR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078287", "pmid": "39425237", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Infant Upper Respiratory Microbiome"}]}, "curson arj": {"display": "Curson ARJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522699", "pmid": "31427729", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}]}, "curtis n": {"display": "Curtis N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55714", "pmid": "37397142", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analyses of the intestinal microbiome from neonates in the MIS BAIR trial"}, {"acc": "PRJEB55714", "pmid": "41853385", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analyses of the intestinal microbiome from neonates in the MIS BAIR trial"}]}, "cuscino n": {"display": "Cuscino N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1294276", "pmid": "41019762", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human pegivirus isolate Pegi-ITA-25, complete genome."}]}, "cusco a": {"display": "Cuscó A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42270", "pmid": "33957869", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Long-read metagenomics to retrieve high-quality metagenome-assembled genomes from canine…"}]}, "cusi mg": {"display": "Cusi MG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB121228", "pmid": "41683794", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}]}, "custovic a": {"display": "Custovic A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1080233", "pmid": "39214237", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Breathing Together severe wheeze and asthma cohort"}]}, "cusumano g": {"display": "Cusumano G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}]}, "cutfield ws": {"display": "Cutfield WS", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA637785", "pmid": "33346848", "pos": "last", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA637785", "pmid": "33985595", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA701480", "pmid": "34186487", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Vaginal seeding in babies born by caesarean section (ECOBABe trial) - shotgun metagenomic…"}, {"acc": "PRJNA707065", "pmid": "35075183", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "NiPPeR Study - pilot microbiome investigation"}]}, "cvancarova smastuen m": {"display": "Cvancarova Småstuen M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31678062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "cybulski js": {"display": "Cybulski JS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "cytryn e": {"display": "Cytryn E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA598014", "pmid": "34454634", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Broiler Chicken Cloacal and Litter Meta-genomic Samples"}, {"acc": "PRJNA661164", "pmid": "33904706", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Treated Wastewater and Soil Meta-genomic Samples"}]}, "czarnecki-maulden g": {"display": "Czarnecki-Maulden G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB20308", "pmid": "29669589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Similarity of the dog and human gut microbiomes in gene content and response to diet"}]}, "czarnowski p": {"display": "Czarnowski P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA943135", "pmid": "37577378", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diarrhoeal-associated gut dysbiosis in cancer and inflammatory bowel disease patients i…"}]}, "d opina la": {"display": "D Opiña LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": "40631735", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "d'aiuto l": {"display": "D'Aiuto L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1187541", "pmid": "39753133", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Raw metagenomics sequencing from human hippocampi."}]}, "d'alfonso r": {"display": "D'Alfonso R", "group": false, "n_studies": 16, "studies": [{"acc": "PRJEB12669", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB24771", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB32135", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA287207", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA322188", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA339914", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA473126", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA524703", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA549787", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA557731", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA715615", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural infant gut microbiota"}]}, "d'amato cl": {"display": "D'Amato CL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "42311381", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "d'amico f": {"display": "D'Amico F", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA525982", "pmid": "30948795", "pos": "first", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transpl…"}, {"acc": "PRJNA877820", "pmid": "32209716", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}, {"acc": "PRJNA914532", "pmid": "36639555", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "Levofloxacin prophylaxis and parenteral nutrition have a detrimental effect on intestinal…"}]}, "d'amore r": {"display": "D'Amore R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8179", "pmid": "25586220", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Synthetic community metagenomes study"}]}, "d'aquila r": {"display": "D'Aquila R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA836336", "pmid": "36179550", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenome of MSM prior to and following HIV seroconversion"}]}, "d'arc m": {"display": "D'arc M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA847605", "pmid": "36565815", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosa…"}]}, "d'haens gr": {"display": "D'Haens GR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46777", "pmid": "25836986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Ulcerative Colitis."}]}, "d'humieres c": {"display": "d'Humières C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "d'mello-guyett l": {"display": "D'Mello-Guyett L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1355224", "pmid": "42037384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human metagenomic samples Metagenome"}]}, "d'sa v": {"display": "D'Sa V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA695570", "pmid": "34442687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "d'souza aw": {"display": "D'Souza AW", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA473126", "pmid": "30374198", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA549787", "pmid": "31832638", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA688274", "pmid": "34092249", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Netherland Travelers"}]}, "da pena gv": {"display": "Da Peña GV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "da silva ac": {"display": "da Silva AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29052", "pmid": "39794474", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}]}, "da silva filipe a": {"display": "da Silva Filipe A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}, {"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "da silva jv": {"display": "da Silva JV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA987743", "pmid": "38163076", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Ruminal and Fecal Microbiomes of Brazilian Nelore Cattle"}]}, "da silva k": {"display": "Da Silva K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}, {"acc": "PRJEB43454", "pmid": "35151268", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Long-term diosmectite use does not alter the gut microbiota in adults with chronic diarrh…"}]}, "da silva lp": {"display": "da Silva LP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "da silva na": {"display": "da Silva NA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB49648", "pmid": "39155318", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Neolithic Yersinia pestis infections in humans and a dog"}, {"acc": "PRJEB66169", "pmid": "41540446", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient DNA study provides clues to leprosy susceptibility in medieval Europe"}]}, "da silveira icf": {"display": "da Silveira ICF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA846723", "pmid": "39527605", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of oral administration of Bifidobacterium animalis subsp. lactis HN019 on the tre…"}]}, "dabbagh k": {"display": "Dabbagh K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "36220843", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "dabdoub sm": {"display": "Dabdoub SM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA417283", "pmid": "38058267", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA508385", "pmid": "27991530", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Comparative metagenomics reveals taxonomically idiosyncratic yet functionally congruent c…"}]}, "dabelea d": {"display": "Dabelea D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29078", "pmid": "30352933", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}]}, "dabhi jc": {"display": "Dabhi JC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB26614", "pmid": "31754151", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Khambhat"}, {"acc": "PRJEB26615", "pmid": "31754151", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Kutch"}]}, "dabrowska m": {"display": "Dąbrowska M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA943135", "pmid": "37577378", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diarrhoeal-associated gut dysbiosis in cancer and inflammatory bowel disease patients i…"}]}, "dabrowski p": {"display": "Dąbrowski P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "dade e": {"display": "Dade E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "34454437", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "dade ef": {"display": "Dade EF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "34215179", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35568730", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35906254", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "daffonchio d": {"display": "Daffonchio D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA781406", "pmid": "35444202", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Vanishing Glaciers Project"}]}, "daguin c": {"display": "Daguin C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "dahan d": {"display": "Dahan D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA376566", "pmid": "29925423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}]}, "dahl c": {"display": "Dahl C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29078", "pmid": "30352933", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJEB29078", "pmid": "30813950", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}]}, "dahl db": {"display": "Dahl DB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB2778", "pmid": "22546241", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}]}, "dahle h": {"display": "Dahle H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1233203", "pmid": null, "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Microbiome of recirculating aquaculture systems under different particle loads (MikroRAS)"}]}, "dahle u": {"display": "Dahle U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1009231", "pmid": "39019886", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Born in the twilight of antbiotics"}]}, "dahlerup jf": {"display": "Dahlerup JF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA812583", "pmid": "36352460", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level metagenomics reveal microbial transfer from donor to infant after fecal micr…"}]}, "dai dl": {"display": "Dai DL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}]}, "dai dly": {"display": "Dai DLY", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715601", "pmid": "41980780", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "37644001", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "42337243", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "dai l": {"display": "Dai L", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB23524", "pmid": "38868710", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS data from FMT trial for the treatment of recurrent Clostridium difficile infection"}, {"acc": "PRJEB6456", "pmid": "38868710", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA285502", "pmid": "38868710", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota transplantation (FMT) for ulcerative colitis"}, {"acc": "PRJNA625520", "pmid": "38868710", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Linking strain engraftment in fecal microbiota transplantation with maintenance of remiss…"}, {"acc": "PRJNA669352", "pmid": "33820946", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome assembly for sulfonamide subsistence and the transfer of genetic determinants"}]}, "dai m": {"display": "Dai M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB29030", "pmid": "38338730", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lettuce Microbiome (PRJCA018891)"}]}, "dai q": {"display": "Dai Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA866654", "pmid": "36358819", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Exploring gut microbiome in predicting efficacy of immuno-therapy in non-small cell lung…"}]}, "dai tt": {"display": "Dai TT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1428929", "pmid": "42022809", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota and Metabolome Signatures in Preterm Infants with High versus Low Risk for…"}]}, "dai y": {"display": "Dai Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "dai z": {"display": "Dai Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1170175", "pmid": "40248366", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Vaginal Virome of Healthy Women and Patients with Vaginitis"}]}, "dailey-chwalibog t": {"display": "Dailey-Chwalibóg T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1113165", "pmid": "40102379", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}]}, "daillere r": {"display": "Daillère R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "dal'molin cg": {"display": "Dal'Molin CG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA313232", "pmid": "27388460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteroidales group S24-7 population genome recovery"}]}, "dalby m": {"display": "Dalby M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "dalby mj": {"display": "Dalby MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": "36906612", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "dale c": {"display": "Dale C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA315636", "pmid": "26896138", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Neotoma albigula fecal microbial communities Targeted Locus (Loci)"}]}, "dalen l": {"display": "Dalén L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41240", "pmid": "33434506", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Heterogeneous hunter-gatherer and steppe-related ancestries in Late Neolithic and Bell Be…"}]}, "dalgard cl": {"display": "Dalgard CL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "dalgic b": {"display": "Dalgic B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "dallinga-thie gm": {"display": "Dallinga-Thie GM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "dalmasso a": {"display": "Dalmasso A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA638876", "pmid": "32983010", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of milk and in-line milk filter"}]}, "dalmasso m": {"display": "Dalmasso M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA385126", "pmid": "29761040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA48479", "pmid": "29761040", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "dalmat rr": {"display": "Dalmat RR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "30305383", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "dalphin jc": {"display": "Dalphin JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15633", "pmid": "35406036", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}]}, "daly j": {"display": "Daly J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352475", "pmid": "36420990", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "daly jn": {"display": "Daly JN", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA313232", "pmid": "27388460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteroidales group S24-7 population genome recovery"}, {"acc": "PRJNA492716", "pmid": "31384000", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}]}, "damgaard pb": {"display": "Damgaard PB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "damman cj": {"display": "Damman CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA285502", "pmid": "26288277", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiota transplantation (FMT) for ulcerative colitis"}]}, "danckert n": {"display": "Danckert N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60914", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Roles of gut microbiota-mediated nutrient competition and metabolite inhibition in the in…"}]}, "danckert np": {"display": "Danckert NP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA957107", "pmid": "38291926", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Imrabiome - Rheumatoid project"}]}, "dang h": {"display": "Dang H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1274127", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Fecal metagenome of Chinese Sturgeons (Acipenser sinensis) gut microbiota"}]}, "dang m": {"display": "Dang M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "dangana t": {"display": "Dangana T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}]}, "dangiolo m": {"display": "Dangiolo M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912638", "pmid": "37213047", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MICROBIOME IN AGING GUT AND BRAIN (MiaGB) STUDY"}]}, "dangvard pedersen d": {"display": "Dangvard Pedersen D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "danhof ha": {"display": "Danhof HA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}]}, "daniau a": {"display": "Daniau A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "daniel cr": {"display": "Daniel CR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA734860", "pmid": "34633706", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "daniel n": {"display": "Daniel N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}]}, "daniel r": {"display": "Daniel R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA240141", "pmid": "25208077", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "daniel s": {"display": "Daniel S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893635", "pmid": "36361763", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}, {"acc": "PRJNA893635", "pmid": "37297350", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}]}, "daniel sg": {"display": "Daniel SG", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1088536", "pmid": "39030654", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of dietary zinc on the gut microbiome and resistome of the gestating cow and neon…"}, {"acc": "PRJNA1209098", "pmid": "40597335", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "The effect of dietary zinc on the microbiome and resistome of the gestating sow and neona…"}, {"acc": "PRJNA872399", "pmid": "36474348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}, {"acc": "PRJNA930375", "pmid": "37264481", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Addition of cariogenic pathogens to complex oral microbiota drives significant changes in…"}]}, "daniel t": {"display": "Daniel T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA598014", "pmid": "34454634", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Broiler Chicken Cloacal and Litter Meta-genomic Samples"}]}, "daniel-macdougall cr": {"display": "Daniel-MacDougall CR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "daniels b": {"display": "Daniels B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA549787", "pmid": "31832638", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}]}, "daniels km": {"display": "Daniels KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA977671", "pmid": "38320392", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Microbiome analysis of cold related stress in poultry"}]}, "dannenberg j": {"display": "Dannenberg J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA240141", "pmid": "25208077", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "dantas g": {"display": "Dantas G", "group": false, "n_studies": 17, "studies": [{"acc": "PRJNA1060349", "pmid": "40175737", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Weaning accelerates and transforms within-host adaptation in the infant gut microbiome"}, {"acc": "PRJNA1067813", "pmid": "39731916", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C. difficile-associated mouse and human fecal metagenomes"}, {"acc": "PRJNA1148144", "pmid": "40128855", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Biosignatures of late-onset extraintestinal bacterial infections"}, {"acc": "PRJNA215106", "pmid": "24236055", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}, {"acc": "PRJNA268964", "pmid": "27172044", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "27172044", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA301903", "pmid": "27572443", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA301903", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "30374198", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA549787", "pmid": "31832638", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA688274", "pmid": "34092249", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA698223", "pmid": "36470885", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "TD Cusco travelers study"}, {"acc": "PRJNA701982", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic-driven intestinal dysbiosis in paediatric SBS alters microbiome functions and…"}, {"acc": "PRJNA739008", "pmid": "37866373", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Effect of amoxicillin prophylaxis on gut microbiome and resistome for severe acute malnut…"}, {"acc": "PRJNA884103", "pmid": "37134153", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}, {"acc": "PRJNA945408", "pmid": "38085102", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prev…"}]}, "dantoft tm": {"display": "Dantoft TM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51635", "pmid": "36604748", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}]}, "dao mc": {"display": "Dao MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB23292", "pmid": "29899081", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysbiosis, including decreased gut microbial richness (MGR) and composition modifications…"}]}, "dao s": {"display": "Dao S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "daoud h": {"display": "Daoud H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA628604", "pmid": "32511695", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}]}, "dar hy": {"display": "Dar HY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1071073", "pmid": "38530358", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Transgender Mouse Bone Microbiome"}]}, "darby ac": {"display": "Darby AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62041", "pmid": "37980461", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rotavirus Vaccine Immunogenicity (RoVI) shotgun metagenomics"}]}, "darby em": {"display": "Darby EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1191223", "pmid": "40813371", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of early life antibiotic and probiotic treatment on gut microbiome and resistome o…"}]}, "dartois v": {"display": "Dartois V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA604820", "pmid": "34936382", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin metagenome from antibiotics treated healthy human subjects"}]}, "darzi a": {"display": "Darzi A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473348", "pmid": "36217535", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effect of bariatric surgery on the faecal metagenome"}]}, "das a": {"display": "Das A", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB42304", "pmid": "31843589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differences in Fecal Microbiomes and Metabolomes of People With vs Without Irritable Bowe…"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "das adhikari u": {"display": "Das Adhikari U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "das s": {"display": "Das S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA1156457", "pmid": "39731681", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acanthamoeba sequencing"}]}, "dasari mr": {"display": "Dasari MR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB29065", "pmid": "37158607", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Daily sampling reveals personalized diet-microbiome associations"}, {"acc": "PRJNA290380", "pmid": "37158607", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "dasenko m": {"display": "Dasenko M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA747032", "pmid": "34636674", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of library preparation on metagenomic profiles"}]}, "dash p": {"display": "Dash P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1020650", "pmid": "36676144", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Apical Periodontal sample Metagenomes"}]}, "daskalaki ea": {"display": "Daskalaki EA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9783", "pmid": "26351665", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing Chalcolithic human remains from El Portalón, Spain"}]}, "daumer c": {"display": "Däumer C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB3085", "pmid": "23236009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}]}, "daunt c": {"display": "Daunt C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1080233", "pmid": "39214237", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Breathing Together severe wheeze and asthma cohort"}]}, "dave bp": {"display": "Dave BP", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB26614", "pmid": "30412889", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Khambhat"}, {"acc": "PRJEB26615", "pmid": "30412889", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Kutch"}]}, "davel l": {"display": "Davel L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "davenport c": {"display": "Davenport C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38221", "pmid": "33319812", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Airway metagenome of healthy infants and infants with cystic fibrosis"}]}, "davenport cf": {"display": "Davenport CF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52640", "pmid": "37474785", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Longitudinal development of the airway metagenome of preterm very low birth weight infant…"}]}, "davenport er": {"display": "Davenport ER", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49206", "pmid": "30439937", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}]}, "davenport tc": {"display": "Davenport TC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078287", "pmid": "39425237", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Infant Upper Respiratory Microbiome"}]}, "davey l": {"display": "Davey L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "david a": {"display": "David A", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB52431", "pmid": "36971547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In Vitro Modelling of Oral Microbial Invasion in the Human Colon"}, {"acc": "PRJEB59994", "pmid": "37892187", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evaluation of an Adapted Semi-Automated DNA Extraction for Human Salivary Shotgun Metagen…"}, {"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "david m": {"display": "David M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "34666677", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "david mm": {"display": "David MM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "36220843", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": "37938270", "pos": "last", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": null, "pos": "last", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "davido b": {"display": "Davido B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1121295", "pmid": "38964511", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FEDEX Study Fecal Metagenomes"}]}, "davidson b": {"display": "Davidson B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "davidson j": {"display": "Davidson J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "davidson la": {"display": "Davidson LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB2778", "pmid": "22546241", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}, {"acc": "PRJEB2778", "pmid": "33353204", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}]}, "davidson no": {"display": "Davidson NO", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA301903", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA701982", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic-driven intestinal dysbiosis in paediatric SBS alters microbiome functions and…"}]}, "davidson rm": {"display": "Davidson RM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "30429252", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "davies fj": {"display": "Davies FJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60914", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Roles of gut microbiota-mediated nutrient competition and metabolite inhibition in the in…"}]}, "davies ma": {"display": "Davies MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "davies mr": {"display": "Davies MR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32631", "pmid": "42032281", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB47909", "pmid": "42032281", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "FMT datasets of patients with recurrent Clostridioides difficile infection (rCDI), inflam…"}]}, "davies ps": {"display": "Davies PS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14969", "pmid": "27694811", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dairy and plant based food intakes are associated with altered faecal microbiota in 2 to…"}]}, "davila ml": {"display": "Davila ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "davis e": {"display": "Davis E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1320699", "pmid": "42088498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "16S sequencing of infant stool Metagenome"}]}, "davis ea": {"display": "Davis EA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}]}, "davis ec": {"display": "Davis EC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1290379", "pmid": "41593042", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool"}]}, "davis jc": {"display": "Davis JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15633", "pmid": "28079170", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}]}, "davis jcc": {"display": "Davis JCC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA390646", "pmid": "29242832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}]}, "davis mr": {"display": "Davis MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "davison aj": {"display": "Davison AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "davison s": {"display": "Davison S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA899808", "pmid": "36543914", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Role of the gut microbiome in lung fibrosis"}]}, "dawood fs": {"display": "Dawood FS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "dawson hd": {"display": "Dawson HD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1406675", "pmid": "41901112", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "GEO accession GSE317287 is currently private and is scheduled to be released on Jul 01, 2…"}]}, "dawson njr": {"display": "Dawson NJR", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}, {"acc": "PRJEB32631", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA400115", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}, {"acc": "PRJNA806984", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}, {"acc": "PRJNA994433", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Variability of Bifidobacterium Species in the Infant Gut is Independent of M…"}]}, "dawson pa": {"display": "Dawson PA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078280", "pmid": "38405928", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Quantifying forms and functions of intestinal bile acid pools in mice"}]}, "day cp": {"display": "Day CP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "day l": {"display": "Day L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA255985", "pmid": "25279840", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human saliva, creek water, and synthetic metagenomic samples used in selective DNA isolat…"}]}, "daza r": {"display": "Daza R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "de angel sola d": {"display": "de Ángel Solá D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA938144", "pmid": "37754563", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HOLA gut microbiome"}]}, "de beaufort c": {"display": "de Beaufort C", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA289586", "pmid": "27723761", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA289586", "pmid": "30747106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA379120", "pmid": "30504906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA489090", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA595749", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}]}, "de biase r": {"display": "De Biase R", "group": false, "n_studies": 72, "studies": [{"acc": "PRJEB10878", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB1220", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB26795", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB27005", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27928", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB29052", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29127", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB30834", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB33098", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB38528", "pmid": "38441032", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB39610", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB41102", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB46788", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB6070", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB7774", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJNA1046438", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA268964", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA289586", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA290380", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA307231", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA327106", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA345144", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA360177", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA379120", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA380118", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA386422", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA392180", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA397112", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA400072", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA401385", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA422434", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA431482", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA438847", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA445968", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA449784", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA503909", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA521587", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA527208", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA529124", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA531203", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA542703", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA547591", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA549787", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA553191", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA562600", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Multi-omic analysis of Clostridioides difficile infection and response to therapy in pedi…"}, {"acc": "PRJNA588513", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA624223", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624763", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA633576", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA644725", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA658422", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "gut microbiome shifts associated with Henoch-Schonlein purpura"}, {"acc": "PRJNA679346", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA687536", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA688164", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688274", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA695570", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA714678", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA752006", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing to Examine the Gut Microbiome in Konzo"}, {"acc": "PRJNA772518", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}]}, "de bont lwp": {"display": "de Bont LWP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1215350", "pmid": "40600797", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "16S rRNA sequences of sediment incubations from a eutrophic marine lake"}]}, "de both md": {"display": "De Both MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA695570", "pmid": "34442687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "de brauw lm": {"display": "De Brauw LM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "de brevern ag": {"display": "de Brevern AG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}]}, "de carvalho il": {"display": "de Carvalho IL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "35750157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "36131032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "de castilhos j": {"display": "de Castilhos J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "de coninck l": {"display": "De Coninck L", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1088476", "pmid": "40321713", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Cameroonian blackflies (Diptera: Simuliidae) harbour a plethora of (RNA) viruses"}, {"acc": "PRJNA705894", "pmid": "33883261", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenomics of Belgian mosquitoes"}, {"acc": "PRJNA880624", "pmid": "38742876", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenomics of single Belgian field mosquitoes."}]}, "de conto f": {"display": "De Conto F", "group": false, "n_studies": 72, "studies": [{"acc": "PRJEB10878", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB1220", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB26795", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB27005", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27928", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB29052", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29127", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB30834", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB33098", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB38528", "pmid": "38441032", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB39610", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB41102", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB46788", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB6070", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB7774", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJNA1046438", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA268964", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA289586", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA290380", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA307231", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA327106", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA345144", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA360177", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA379120", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA380118", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA386422", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA392180", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA397112", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA400072", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA401385", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA422434", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA431482", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA438847", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA445968", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA449784", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA503909", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA521587", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA527208", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA529124", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA531203", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA542703", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA547591", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA549787", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA553191", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA562600", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Multi-omic analysis of Clostridioides difficile infection and response to therapy in pedi…"}, {"acc": "PRJNA588513", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA624223", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624763", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA633576", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA644725", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA658422", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "gut microbiome shifts associated with Henoch-Schonlein purpura"}, {"acc": "PRJNA679346", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA687536", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA688164", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688274", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA695570", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA714678", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA752006", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing to Examine the Gut Microbiome in Konzo"}, {"acc": "PRJNA772518", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}]}, "de cripan sm": {"display": "de Cripan SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA949443", "pmid": "37175775", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Targeted Locus (Loci)"}]}, "de faire u": {"display": "de Faire U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "de filippis f": {"display": "De Filippis F", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39407346", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39095404", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "39095404", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "de finardi aj": {"display": "de Finardi AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "de flamingh a": {"display": "de Flamingh A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "de goffau mc": {"display": "de Goffau MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28671", "pmid": "34972822", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A_novel_nano_iron_supplement__IHAT__to_safely_combact_iron_deficiency_and_anemia"}]}, "de graaf rm": {"display": "de Graaf RM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1215350", "pmid": "40600797", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "16S rRNA sequences of sediment incubations from a eutrophic marine lake"}]}, "de groot pf": {"display": "de Groot PF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46779", "pmid": "29566738", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Extended-Spectrum Beta Lactamase Carriers."}]}, "de gunzburg j": {"display": "de Gunzburg J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685914", "pmid": "33854066", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiota-based markers predictive of development of Clostridioides difficile infection"}]}, "de jesus rp": {"display": "de Jesus RP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "de jong j": {"display": "de Jong J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA795992", "pmid": "35336963", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenome of potential vectors (ticks, mosquitos, etc.)"}]}, "de jong md": {"display": "de Jong MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA688274", "pmid": "34092249", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Netherland Travelers"}]}, "de jonge a": {"display": "de Jonge A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "de keersmaecker scj": {"display": "De Keersmaecker SCJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1031997", "pmid": "38659981", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}, {"acc": "PRJNA954551", "pmid": "37537550", "pos": "last", "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Nanopore sequencing of HMW-DNA to compare DNA extraction methods for metagenomics"}]}, "de koff em": {"display": "de Koff EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA555020", "pmid": "36380002", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}]}, "de kroon mla": {"display": "de Kroon MLA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "de la porte des vaux c": {"display": "De La Porte Des Vaux C", "group": true, "n_studies": 1, "studies": [{"acc": "PRJNA1004259", "pmid": "38047654", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic and Amplicon-based Nanopore Sequencing of French Human Monkeypox direct from…"}]}, "de la rosa-diaz jj": {"display": "De La Rosa-Díaz JJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "de lastours v": {"display": "de Lastours V", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}, {"acc": "PRJEB35816", "pmid": "32585945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota of carriers of extended-spectrum beta-lactamase or carbapenemase-producing…"}]}, "de lorenzi-tognon m": {"display": "de Lorenzi-Tognon M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB57944", "pmid": "40182766", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Diagnosing endocarditis by metagenomics"}, {"acc": "PRJEB65720", "pmid": "37722530", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acute bacterial meningitis due to Neisseria meningitidis serotype B missed by a multiplex…"}]}, "de los angeles garcia martinez m": {"display": "de Los Ángeles García Martínez M", "group": true, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "de los reyes-gavilan cg": {"display": "de los Reyes-Gavilán CG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6972", "pmid": "25491920", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The microbial colonization of the intestine during the first monthsof life constitutes th…"}]}, "de los rios a": {"display": "de los Ríos A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "de magistris a": {"display": "De Magistris A", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA273761", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}]}, "de man tjb": {"display": "de Man TJB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1011899", "pmid": "40155393", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Collaborative spiking study 2B for high throughput sequencing for virus detection"}]}, "de medeiros sr": {"display": "de Medeiros SR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA987743", "pmid": "38163076", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Ruminal and Fecal Microbiomes of Brazilian Nelore Cattle"}]}, "de medeiros vb": {"display": "de Medeiros VB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "de miranda nfcc": {"display": "de Miranda NFCC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "de muinck ej": {"display": "de Muinck EJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1085219", "pmid": "39134593", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance gene dynamics in the commensal infant gut microbiome over the first…"}]}, "de nies l": {"display": "de Nies L", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA379120", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA489090", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA595749", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}, {"acc": "PRJNA781406", "pmid": "35444202", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Vanishing Glaciers Project"}]}, "de oliveira am": {"display": "de Oliveira AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA846723", "pmid": "39527605", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of oral administration of Bifidobacterium animalis subsp. lactis HN019 on the tre…"}]}, "de oliveira lino fs": {"display": "de Oliveira Lino FS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573821", "pmid": "32919472", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Whole Meta-genome shotgun sequencing of stool samples from human treated with antibiotics"}]}, "de oliveira pe": {"display": "De Oliveira PE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "de oliveira psn": {"display": "de Oliveira PSN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA987743", "pmid": "38163076", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Ruminal and Fecal Microbiomes of Brazilian Nelore Cattle"}]}, "de oliveira r": {"display": "de Oliveira R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA947377", "pmid": "38366600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Establishment of a non-Westernized gut microbiota in men who have sex with men is associa…"}]}, "de oliveira rf": {"display": "de Oliveira RF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA717815", "pmid": "35758687", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human salivary metagenome in health and disease"}]}, "de prada g": {"display": "De Prada G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}]}, "de rooij mmt": {"display": "de Rooij MMT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1049329", "pmid": "39315772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human oropharyngeal resistome of COPD cases and controls using ResCap"}]}, "de salazar a": {"display": "de Salazar A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55075", "pmid": "38524774", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Molecular and phylogenetic characterization of the monkeypox outbreak in Andalusia, Spain"}]}, "de sanctis v": {"display": "De Sanctis V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "de sessions pf": {"display": "de Sessions PF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "de sousa bezerra av": {"display": "de Sousa Bezerra AV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA955235", "pmid": "42262087", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}]}, "de staercke v": {"display": "De Staercke V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA781406", "pmid": "35444202", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Vanishing Glaciers Project"}]}, "de thoisy b": {"display": "de Thoisy B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA942254", "pmid": "37650612", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomics of fecal samples from ant-eating mammal species"}]}, "de toro m": {"display": "de Toro M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819232", "pmid": "35618952", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Integrase Inhibitors on gut and oral microbiome"}]}, "de truchis p": {"display": "de Truchis P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1121295", "pmid": "38964511", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FEDEX Study Fecal Metagenomes"}]}, "de vadder f": {"display": "De Vadder F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB127029", "pmid": "26552345", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abun…"}]}, "de vito c": {"display": "De Vito C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36797", "pmid": "32711187", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The GLP-1R agonist liraglutide limits hepatic lipotoxicity and inflammatory response in m…"}]}, "de vos w": {"display": "de Vos W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB89462", "pmid": "41873970", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of phage enrichment on the observed infant gut phageome"}]}, "de vos wm": {"display": "de Vos WM", "group": false, "n_studies": 14, "studies": [{"acc": "PRJEB100868", "pmid": "42644416", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "PREVENT 1: Gut microbiota development and health in early life"}, {"acc": "PRJEB10914", "pmid": "36093611", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Developmental Ecology of the Human Microbiome - Restoration Study of babies."}, {"acc": "PRJEB11685", "pmid": "26811868", "pos": "last", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children"}, {"acc": "PRJEB12357", "pmid": "22728514", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB12357", "pmid": "27126044", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB27325", "pmid": "30214024", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}, {"acc": "PRJEB27325", "pmid": "30326954", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}, {"acc": "PRJEB27325", "pmid": "36093611", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB46777", "pmid": "25836986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Ulcerative Colitis."}, {"acc": "PRJEB46778", "pmid": "27126044", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}, {"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}, {"acc": "PRJEB46779", "pmid": "29566738", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Extended-Spectrum Beta Lactamase Carriers."}, {"acc": "PRJEB52774", "pmid": "31253623", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB52774", "pmid": "36274732", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB52774", "pmid": "37731926", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB64567", "pmid": "33007265", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Maternal FMT in Cesarean-Born Infants - WGS sequencing of infants (1w to 1year) and mater…"}, {"acc": "PRJEB70237", "pmid": "38838470", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB70237", "pmid": "39092808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB70237", "pmid": "40315414", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB70237", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJNA499081", "pmid": "33794724", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}, {"acc": "PRJNA701480", "pmid": "36093611", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Vaginal seeding in babies born by caesarean section (ECOBABe trial) - shotgun metagenomic…"}]}, "de waal wj": {"display": "de Waal WJ", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA555020", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA613032", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life and effects of early life antibiotics, annotated shotgun s…"}, {"acc": "PRJNA613054", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal resistome in early life and effects of early life antibiotics, annotated shotgun se…"}]}, "de wilde rf": {"display": "de Wilde RF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "de wolf k": {"display": "De Wolf K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA880624", "pmid": "38742876", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenomics of single Belgian field mosquitoes."}]}, "de-dios t": {"display": "de-Dios T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32319", "pmid": "32004756", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Reads sequenced from a parchment blood stain attributed to the french revolutionary Jean…"}, {"acc": "PRJEB43276", "pmid": "34527890", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Salmonella enterica from a soldier from the 1652-siege of Barcelona (Spain) supports hist…"}]}, "dearing md": {"display": "Dearing MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA315636", "pmid": "26896138", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Neotoma albigula fecal microbial communities Targeted Locus (Loci)"}]}, "debelius j": {"display": "Debelius J", "group": false, "n_studies": 12, "studies": [{"acc": "PRJEB32631", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB51728", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB6456", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA322188", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA352475", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA473126", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA549787", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA595749", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}, {"acc": "PRJNA898628", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "PINGU Fecal samples Metagenome"}]}, "debelius jw": {"display": "Debelius JW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB17694", "pmid": "27912057", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Di…"}]}, "deblais l": {"display": "Deblais L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "32351922", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "33553097", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "41185061", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "deblauwe i": {"display": "Deblauwe I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA880624", "pmid": "38742876", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenomics of single Belgian field mosquitoes."}]}, "deboutte w": {"display": "Deboutte W", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA344863", "pmid": "27666390", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral Metagenomics of fecal samples of fruit bats"}, {"acc": "PRJNA693793", "pmid": "35320047", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BaBel Infant Gut Virome Raw Data"}]}, "debroucker c": {"display": "Debroucker C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1262354", "pmid": "41603547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMBARK - Establishing a Monitoring Baseline for Antimicrobial Resistance in Key environme…"}]}, "dechelotte p": {"display": "Déchelotte P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}]}, "dechend r": {"display": "Dechend R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}]}, "decorte m": {"display": "Decorte M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1033532", "pmid": "38014294", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Evaluating the impact of pharmaceuticals on the human gut microbiome Raw sequence reads"}]}, "deeba im": {"display": "Deeba IM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA806984", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}]}, "defazio j": {"display": "Defazio J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14474", "pmid": "28539477", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}]}, "degiorgio m": {"display": "DeGiorgio M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "degrave w": {"display": "Degrave W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "dehli rk": {"display": "Dehli RK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB84944", "pmid": "40885737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of 56 mother-infant dyads from the ALADDIN birth cohort"}]}, "deiana m": {"display": "Deiana M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB121228", "pmid": "38793608", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}, {"acc": "PRJEB121228", "pmid": "41683794", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}]}, "deik a": {"display": "Deik A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}]}, "deitzler ge": {"display": "Deitzler GE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "37938270", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "dekens jam": {"display": "Dekens JAM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "dekker jp": {"display": "Dekker JP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445389", "pmid": "30586509", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Sphingomonas koreensis Genome sequencing and assembly"}]}, "dekker nitert m": {"display": "Dekker Nitert M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1076911", "pmid": "38995243", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant and maternal gut microbiomes"}]}, "dekkers kf": {"display": "Dekkers KF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "36151114", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "del barco e": {"display": "Del Barco E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "del bel kl": {"display": "Del Bel KL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA838575", "pmid": "37644001", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "del chierico f": {"display": "Del Chierico F", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1013917", "pmid": "37965266", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Gut microbiota of an immunocompromised child with chronic cryptosporidiosis"}, {"acc": "PRJNA1036590", "pmid": "38318164", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "The Pediatric Gut Microbiome and Virome"}]}, "del papa m": {"display": "Del Papa M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "del romero j": {"display": "Del Romero J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB5185", "pmid": "25407519", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysfunctional gut microbiota drives chronic immune activation in HIV-treated individuals"}]}, "del valle dm": {"display": "Del Valle DM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA946744", "pmid": "39666007", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Homo sapiens metagenomic sequences"}]}, "dela-del lawson at": {"display": "Dela-Del Lawson AT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1079728", "pmid": "38655084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Next-generation sequencing survey of acute febrile illness in Senegal (2020-2022)"}]}, "delagrave s": {"display": "Delagrave S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA679286", "pmid": "34320399", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Global genome analyses reveal a vast and dynamic anellovirus landscape within the human v…"}]}, "delang l": {"display": "Delang L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA705894", "pmid": "33883261", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenomics of Belgian mosquitoes"}, {"acc": "PRJNA880624", "pmid": "38742876", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenomics of single Belgian field mosquitoes."}]}, "delatorre e": {"display": "Delatorre E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "delaune v": {"display": "Delaune V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44214", "pmid": "34983654", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in the gut microbiome in colon cancer surgery patients: a pilot observational stu…"}]}, "delavy m": {"display": "Delavy M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "delbes c": {"display": "Delbès C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6314", "pmid": "25496341", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Construction of a dairy microbial genome catalog opens new perspectives for the metagenom…"}]}, "deleon o": {"display": "DeLeon O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}]}, "deleuze jf": {"display": "Deleuze JF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41240", "pmid": "33434506", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Heterogeneous hunter-gatherer and steppe-related ancestries in Late Neolithic and Bell Be…"}]}, "delforno tp": {"display": "Delforno TP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29861", "pmid": "31550653", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "UNVEILING RESISTOME PROFILES IN THE SEDIMENTS OF AN ANTARCTIC VOLCANIC ISLAND"}]}, "delgado medrano ay": {"display": "Delgado Medrano AY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "delgado s": {"display": "Delgado S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "delgado-baquerizo m": {"display": "Delgado-Baquerizo M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "deligios m": {"display": "Deligios M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB19090", "pmid": "27671352", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}]}, "dell'orso s": {"display": "Dell'Orso S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}]}, "della casa p": {"display": "Della Casa P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "delmas-eliason a": {"display": "Delmas-Eliason A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078280", "pmid": "38405928", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Quantifying forms and functions of intestinal bile acid pools in mice"}]}, "delogu f": {"display": "Delogu F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58634", "pmid": "40707831", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencin…"}]}, "delongchamp jz": {"display": "DeLongchamp JZ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701961", "pmid": "37069665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA701961", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "delsuc f": {"display": "Delsuc F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA942254", "pmid": "37650612", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomics of fecal samples from ant-eating mammal species"}]}, "delwart e": {"display": "Delwart E", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA255683", "pmid": "25078300", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "CAT fecal Metagenome"}, {"acc": "PRJNA495079", "pmid": "31097029", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "New circovirus infecting phyton liver"}, {"acc": "PRJNA548968", "pmid": "31652508", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Fecal virome of wild and captive Cynomolgus macaques (Macaca fascicularis) in Thailand."}]}, "demaria s": {"display": "Demaria S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "demerath ew": {"display": "Demerath EW", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1019702", "pmid": "39043677", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "39265573", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1198101", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic re-sequencing of human milk"}]}, "demergasso c": {"display": "Demergasso C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "demers g": {"display": "DeMers G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1209098", "pmid": "40597335", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "The effect of dietary zinc on the microbiome and resistome of the gestating sow and neona…"}]}, "deming c": {"display": "Deming C", "group": false, "n_studies": 8, "studies": [{"acc": "PRJNA1156457", "pmid": "39731681", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acanthamoeba sequencing"}, {"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}, {"acc": "PRJNA445389", "pmid": "30586509", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Sphingomonas koreensis Genome sequencing and assembly"}, {"acc": "PRJNA46333", "pmid": "22310478", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "23698366", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "25279917", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "28679656", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "37054678", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA471898", "pmid": "30397357", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The skin microbiome of DOCK8-deficient patients"}, {"acc": "PRJNA542320", "pmid": "31700190", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacteria Genome sequencing and assembly"}, {"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "deming jw": {"display": "Deming JW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1227241", "pmid": "40883892", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Investigating DNA methylation in sea-ice Bacteria"}]}, "demis d": {"display": "Demis D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177009", "pmid": "40738103", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A human milk oligosaccharide alters the microbiome, circulating hormones, cytokines and m…"}]}, "dempsey e": {"display": "Dempsey E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA971895", "pmid": "38310316", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Resismet"}]}, "den uyl pa": {"display": "Den Uyl PA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA679730", "pmid": null, "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2018"}, {"acc": "PRJNA702522", "pmid": null, "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2019"}]}, "denamur e": {"display": "Denamur E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45090", "pmid": "39665373", "pos": null, "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "ED Gut"}, {"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "denef vj": {"display": "Denef VJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA60717", "pmid": "21191099", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomic analysis of infant stool sample"}, {"acc": "PRJNA61745", "pmid": "21191099", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Strain-resolved community genomic analysis of gut microbial colonization in a premature i…"}]}, "deneudt k": {"display": "Deneudt K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "deng b": {"display": "Deng B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1402009", "pmid": "41726387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "faeces of British shorthair Raw sequence reads"}]}, "deng hw": {"display": "Deng HW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA312041", "pmid": "27226242", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human fecal raw sequence reads"}]}, "deng l": {"display": "Deng L", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB46943", "pmid": "35181661", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40396485", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "41387423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA1094595", "pmid": "39449043", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "SSLR"}, {"acc": "PRJNA1113165", "pmid": "40102379", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}, {"acc": "PRJNA492716", "pmid": "31384000", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA715601", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA926386", "pmid": "37635262", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Phagestorage"}]}, "deng ll": {"display": "Deng LL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}]}, "deng m": {"display": "Deng M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA427267", "pmid": "29235710", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pearl River metagenomics Raw sequence reads"}, {"acc": "PRJNA821338", "pmid": "36259361", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial pathogens and antimicrobial resistance diagnosis workflow using Nanopore adapti…"}, {"acc": "PRJNA869513", "pmid": "36259361", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An ultra-sensitive bacterial pathogen and antimicrobial resistance diagnosis workflow usi…"}]}, "deng t": {"display": "Deng T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA390646", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA633576", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}]}, "deng x": {"display": "Deng X", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA255683", "pmid": "25078300", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "CAT fecal Metagenome"}, {"acc": "PRJNA495079", "pmid": "31097029", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "New circovirus infecting phyton liver"}, {"acc": "PRJNA548968", "pmid": "31652508", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Fecal virome of wild and captive Cynomolgus macaques (Macaca fascicularis) in Thailand."}]}, "deng y": {"display": "Deng Y", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB14607", "pmid": "25721383", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "By taking three metagenomic approaches to reveal the microplankton communities from compo…"}, {"acc": "PRJNA1151839", "pmid": "39663251", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Salivary microbiome in burning mouth syndrome"}, {"acc": "PRJNA1166969", "pmid": "39470277", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Multi-Omics Analysis of the Microbial Profile Characteristics Associated with Pulmonary A…"}, {"acc": "PRJNA669352", "pmid": "33820946", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome assembly for sulfonamide subsistence and the transfer of genetic determinants"}, {"acc": "PRJNA669352", "pmid": "38366247", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome assembly for sulfonamide subsistence and the transfer of genetic determinants"}]}, "denis s": {"display": "Denis S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52431", "pmid": "36971547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In Vitro Modelling of Oral Microbial Invasion in the Human Colon"}]}, "denner dr": {"display": "Denner DR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB20527", "pmid": "26627545", "pos": "first", "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Corticosteroid therapy and airflow obstruction influence the bronchial microbiome, which…"}]}, "denson la": {"display": "Denson LA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}]}, "deoni scl": {"display": "Deoni SCL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA695570", "pmid": "34442687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "deopujari v": {"display": "Deopujari V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417283", "pmid": "29988506", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}]}, "depas wh": {"display": "DePas WH", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1173239", "pmid": "40763731", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Amino acid competition shapes Acinetobacter baumannii gut carriage"}]}, "depledge dp": {"display": "Depledge DP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29554870", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "der sarkissian c": {"display": "Der Sarkissian C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41240", "pmid": "33434506", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Heterogeneous hunter-gatherer and steppe-related ancestries in Late Neolithic and Bell Be…"}]}, "derado g": {"display": "Derado G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "deraspe m": {"display": "Déraspe M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "derisi jl": {"display": "DeRisi JL", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA171119", "pmid": "21559002", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}, {"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}, {"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "derosa l": {"display": "Derosa L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}, {"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "derraik jgb": {"display": "Derraik JGB", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA637785", "pmid": "33346848", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA637785", "pmid": "33985595", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA701480", "pmid": "34186487", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vaginal seeding in babies born by caesarean section (ECOBABe trial) - shotgun metagenomic…"}]}, "derrien m": {"display": "Derrien M", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB34992", "pmid": "33771219", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet and gut microbiome interactions of relevance for symptoms in irritable bowel syndrome"}, {"acc": "PRJEB52748", "pmid": "36794816", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome function and composition in infants from rural Kenya and association with…"}, {"acc": "PRJEB6456", "pmid": "36794816", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "derusso p": {"display": "DeRusso P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "derusso pa": {"display": "DeRusso PA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}]}, "des georges a": {"display": "des Georges A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29970463", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "desai d": {"display": "Desai D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "desantis tz": {"display": "DeSantis TZ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "34666677", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": "36220843", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": "37938270", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "desbuleux jc": {"display": "Desbuleux JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB86263", "pmid": "39218875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gender-affirming hormonal therapy induces a gender-concordant fecal metagenome transition…"}]}, "deschamps c": {"display": "Deschamps C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52431", "pmid": "36971547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In Vitro Modelling of Oral Microbial Invasion in the Human Colon"}]}, "deschaseaux e": {"display": "Deschaseaux E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130617", "pmid": "41505541", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}]}, "descombes p": {"display": "Descombes P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB20308", "pmid": "29669589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Similarity of the dog and human gut microbiomes in gene content and response to diet"}]}, "deshmukh h": {"display": "Deshmukh H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA63661", "pmid": "26110908", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "desjardins y": {"display": "Desjardins Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "dessi a": {"display": "Dessì A", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA273761", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}]}, "deutsch e": {"display": "Deutsch E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}, {"acc": "PRJEB85676", "pmid": "40068595", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "deutsch s": {"display": "Deutsch S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "devalaraja-narashimha k": {"display": "Devalaraja-Narashimha K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "devarajalu p": {"display": "Devarajalu P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1304237", "pmid": "41017911", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota Signatures in Indian Preterm Infants with Necrotizing Enterocolitis"}]}, "devault a": {"display": "Devault A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA348754", "pmid": "27939314", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}]}, "devault am": {"display": "Devault AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352376", "pmid": "28072390", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}]}, "deveaux a": {"display": "DeVeaux A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884103", "pmid": "37134153", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}]}, "deveaux al": {"display": "DeVeaux AL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1067813", "pmid": "39731916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C. difficile-associated mouse and human fecal metagenomes"}, {"acc": "PRJNA1148144", "pmid": "40128855", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Biosignatures of late-onset extraintestinal bacterial infections"}]}, "devente s": {"display": "Devente S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "deveson iw": {"display": "Deveson IW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "devi u": {"display": "Devi U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945262", "pmid": "37067419", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Gut Microbiome in a mother child paired design"}]}, "devlin jm": {"display": "Devlin JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA596855", "pmid": "31383310", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Disease surveillance in wild Victorian cacatuids"}]}, "devlin sm": {"display": "Devlin SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "dewar k": {"display": "Dewar K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA297252", "pmid": "26975510", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Intestinal microbiota dynamics in hospitalized patients"}]}, "dewhurst rj": {"display": "Dewhurst RJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21624", "pmid": "29491419", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of the rumen of Scottish cattle."}]}, "dey h": {"display": "Dey H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}]}, "dey n": {"display": "Dey N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA899808", "pmid": "36543914", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Role of the gut microbiome in lung fibrosis"}]}, "dey s": {"display": "Dey S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1020650", "pmid": "36676144", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Apical Periodontal sample Metagenomes"}]}, "deyaert s": {"display": "Deyaert S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1160256", "pmid": "39919360", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": "40941064", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1177813", "pmid": "39796584", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "2FL age specific bifidobacterium effect"}, {"acc": "PRJNA961974", "pmid": "38236043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The effects of selected plant extracts on the human gut microbiome"}]}, "dhakal s": {"display": "Dhakal S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA484151", "pmid": "31379808", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Rural and Urban infant''s fecal microbiota study"}]}, "dhanraj s": {"display": "Dhanraj S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "dhariwal a": {"display": "Dhariwal A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1009231", "pmid": "39019886", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Born in the twilight of antbiotics"}, {"acc": "PRJNA876384", "pmid": "36620054", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Microbial DNA extraction of high-host content and low biomass samples: optimized protocol…"}]}, "dhudasia mb": {"display": "Dhudasia MB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA872399", "pmid": "36474348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "di c": {"display": "Di C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "di cataldo v": {"display": "Di Cataldo V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "di ciccio p": {"display": "Di Ciccio P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA638876", "pmid": "32983010", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of milk and in-line milk filter"}]}, "di domenico c": {"display": "Di Domenico C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675110", "pmid": "33659220", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiome signature in COVID-19 positive patients"}]}, "di gloria l": {"display": "Di Gloria L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1252002", "pmid": "40615445", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Testing the limits of short-reads metagenomic classifications programs in waste water tre…"}, {"acc": "PRJNA1311054", "pmid": "41242561", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "AGS Pilot Scale Microbiome (Florence IDRO.SMART)"}]}, "di guglielmo md": {"display": "Di Guglielmo MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542703", "pmid": "35310842", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}]}, "di marcantonio l": {"display": "Di Marcantonio L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "38659981", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "di rienzi sc": {"display": "Di Rienzi SC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA321218", "pmid": "24137540", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}]}, "di sapia r": {"display": "Di Sapia R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1168703", "pmid": "38485093", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of an epilepsy-linked gut microbiota signature in a pediatric rat model of…"}]}, "diab a": {"display": "Diab A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "diallo ah": {"display": "Diallo AH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "diallo mh": {"display": "Diallo MH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "diallo s": {"display": "Diallo S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "diamond s": {"display": "Diamond S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698986", "pmid": "34622230", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA698986", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}]}, "dianin a": {"display": "Dianin A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746509", "pmid": "34946200", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota in an infant with propionic acidemia before and after probiotic supplement…"}]}, "diarra b": {"display": "Diarra B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "dias-neto e": {"display": "Dias-Neto E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "diaz de cerio o": {"display": "Díaz de Cerio O", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "diaz n": {"display": "Diaz N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "33553097", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "diaz w": {"display": "Diaz W", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB39661", "pmid": "41513932", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}, {"acc": "PRJEB62571", "pmid": "41513932", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}]}, "diaz-benitez ce": {"display": "Díaz-Benítez CE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA721692", "pmid": "36786619", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "METAGENOMIC ANALYSIS OF MEXICAN CHILDHOOD GUT MICROBIOTA"}]}, "dibner c": {"display": "Dibner C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36797", "pmid": "32711187", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The GLP-1R agonist liraglutide limits hepatic lipotoxicity and inflammatory response in m…"}]}, "dick gj": {"display": "Dick GJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA679730", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2018"}, {"acc": "PRJNA702522", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2019"}]}, "dickens am": {"display": "Dickens AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "36195095", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "dickens c": {"display": "Dickens C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1088536", "pmid": "39030654", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of dietary zinc on the gut microbiome and resistome of the gestating cow and neon…"}]}, "dickey sw": {"display": "Dickey SW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA483343", "pmid": "30305736", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "dickins b": {"display": "Dickins B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA213036", "pmid": "24072871", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Cronobacter sakazakii NCIMB 8272 Genome sequencing and assembly"}]}, "dickmann s": {"display": "Dickmann S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA412411", "pmid": "34163067", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}]}, "dickner r": {"display": "Dickner R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "dickson zw": {"display": "Dickson ZW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA674643", "pmid": "35474894", "pos": "first", "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Validation of Coronavirus and Sepsis Probe Sets designed using HUBDesign"}]}, "diedhiou c": {"display": "Diedhiou C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1079728", "pmid": "38655084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Next-generation sequencing survey of acute febrile illness in Senegal (2020-2022)"}]}, "diefenbach a": {"display": "Diefenbach A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "diehl m": {"display": "Diehl M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}]}, "diel dg": {"display": "Diel DG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA613851", "pmid": "38091183", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "INVESTIGATION OF THE BACTERIAL AND VIRAL DIVERSITY OF DIDELPHID OPOSSUMS FROM BRAZILIAN F…"}]}, "dieleman la": {"display": "Dieleman LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "diem k": {"display": "Diem K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28287142", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28711653", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29281620", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "diener c": {"display": "Diener C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB37883", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJNA1143669", "pmid": "39707483", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of neonates exposed to HIV"}, {"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "diep db": {"display": "Diep DB", "group": false, "n_studies": 38, "studies": [{"acc": "PRJDB4176", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1220", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB19090", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}, {"acc": "PRJEB21528", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB27005", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB29052", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB32135", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB5224", "pmid": "37259063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJEB6456", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB7774", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB9576", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA268964", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA278393", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA287207", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA289586", "pmid": "37259063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA294605", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA299502", "pmid": "37259063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA324672", "pmid": "37259063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA339914", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA375935", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut Metagenome"}, {"acc": "PRJNA380031", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}, {"acc": "PRJNA380118", "pmid": "37259063", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA392180", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "37259063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA397112", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA397219", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA401385", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA422434", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA431482", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA438847", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA449784", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA472785", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Gut Microbiome Metagenomic Sequencing"}, {"acc": "PRJNA473126", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA487636", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "An increased abundance of Clostridiaceae characterizes arthritis in inflammatory bowel di…"}, {"acc": "PRJNA492714", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Impact of High altitude environment of Human oral and gut microbiota"}, {"acc": "PRJNA496479", "pmid": "37259063", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "dietrich e": {"display": "Dietrich E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1198110", "pmid": "40439559", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Clinical infection by Francisella tularensis ssp. holarctica in stranded beluga whales fr…"}]}, "diez-valcarce m": {"display": "Diez-Valcarce M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA853174", "pmid": "35891376", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "digiulio db": {"display": "DiGiulio DB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA288562", "pmid": "26283357", "pos": "first", "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}]}, "dijk si": {"display": "Dijk SI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "dikareva e": {"display": "Dikareva E", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB52774", "pmid": "31253623", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB52774", "pmid": "36274732", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB52774", "pmid": "37731926", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB64567", "pmid": "33007265", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Maternal FMT in Cesarean-Born Infants - WGS sequencing of infants (1w to 1year) and mater…"}, {"acc": "PRJEB89462", "pmid": "41873970", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of phage enrichment on the observed infant gut phageome"}, {"acc": "PRJEB89491", "pmid": "42057198", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "LucKi Gut - Longitudinal metagenomic sequencing of infant gut microbiota"}]}, "dilara a": {"display": "Dilara A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156457", "pmid": "39731681", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acanthamoeba sequencing"}]}, "dillon a": {"display": "Dillon A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA903921", "pmid": "40469735", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Mycobiome Maturation and Its Determinants during Infancy: A Comparison of Shotgun Met…"}]}, "dilullo m": {"display": "DiLullo M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1295573", "pmid": "41760690", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The intestinal microbiome of patients with newly diagnosed invasive breast cancer and duc…"}]}, "dimarco ks": {"display": "DiMarco KS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698986", "pmid": "37973815", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}]}, "dimitrova d": {"display": "Dimitrova D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}, {"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}, {"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "dinan tg": {"display": "Dinan TG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44042", "pmid": "34252569", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Kefir ameliorates specific microbiota-gut-brain axis impairments in a mouse model relevan…"}]}, "ding c": {"display": "Ding C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "ding q": {"display": "Ding Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26795", "pmid": "30609941", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}]}, "ding t": {"display": "Ding T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA801796", "pmid": "37482605", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Upper respiratory tract virus infection alters the host microbial feature"}]}, "ding wc": {"display": "Ding WC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA866095", "pmid": "36046746", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Genome sequencing and assembly"}]}, "ding x": {"display": "Ding X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA589343", "pmid": "32912596", "pos": "first", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The gut microbiota changes in Chinese children with autism spectrum disorders"}]}, "ding xz": {"display": "Ding XZ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746430", "pmid": "35676509", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "camel rumen metagenome Raw sequence reads"}]}, "ding y": {"display": "Ding Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA290380", "pmid": "38193687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA905328", "pmid": "37904586", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut microbes sequencing"}]}, "dinh a": {"display": "Dinh A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1121295", "pmid": "38964511", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FEDEX Study Fecal Metagenomes"}]}, "dinh l": {"display": "Dinh L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1184197", "pmid": "39856104", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Dietary fiber content in clinical ketogenic diets modifies the gut microbiome and seizure…"}]}, "dinis m": {"display": "Dinis M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA624185", "pmid": "33239396", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Deep metagenomics examines the oral microbiome during advanced dental caries in children,…"}]}, "dinkel c": {"display": "Dinkel C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675607", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Biogeochemistry study on Lake Tanganyika in Tanzania"}]}, "dinleyici ec": {"display": "Dinleyici EC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26810", "pmid": "34071061", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}, {"acc": "PRJEB26810", "pmid": "38257101", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}]}, "dinleyici m": {"display": "Dinleyici M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26810", "pmid": "34071061", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}, {"acc": "PRJEB26810", "pmid": "38257101", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}]}, "dioguardi cc": {"display": "Dioguardi CC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA615842", "pmid": "33494335", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}]}, "dion mb": {"display": "Dion MB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40396485", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}]}, "dionisi v": {"display": "Dionisi V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "dionne hd": {"display": "Dionne HD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078280", "pmid": "38405928", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Quantifying forms and functions of intestinal bile acid pools in mice"}]}, "dipesh t": {"display": "Dipesh T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019500", "pmid": "39054413", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}]}, "diruggiero j": {"display": "DiRuggiero J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "diskin b": {"display": "Diskin B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}]}, "ditoro d": {"display": "DiToro D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542320", "pmid": "31700190", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacteria Genome sequencing and assembly"}]}, "dittmann j": {"display": "Dittmann J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130617", "pmid": "41505541", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}]}, "dittrich am": {"display": "Dittrich AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38221", "pmid": "33319812", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Airway metagenome of healthy infants and infants with cystic fibrosis"}]}, "dixit s": {"display": "Dixit S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1020650", "pmid": "36676144", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Apical Periodontal sample Metagenomes"}]}, "djaafar s": {"display": "Djaafar S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43581", "pmid": "34737977", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}]}, "djingarey hm": {"display": "Djingarey HM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "do ka": {"display": "Do KA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "doan t": {"display": "Doan T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "dobbertin-welsch j": {"display": "Dobbertin-Welsch J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "dobney k": {"display": "Dobney K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA688065", "pmid": "33811235", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effectiveness of decontamination protocols when analyzing ancient DNA preserved in dental…"}]}, "dobos g": {"display": "Dobos G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}]}, "dobson-stone c": {"display": "Dobson-Stone C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "docampo md": {"display": "Docampo MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "docquier jd": {"display": "Docquier JD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "dodd l": {"display": "Dodd L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "doddapaneni h": {"display": "Doddapaneni H", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1084251", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tryptophan metabolites in fecal samples from healthy humans"}, {"acc": "PRJNA1195114", "pmid": "40594045", "pos": "last", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "39282326", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1195144", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1224818", "pmid": "38361816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with n…"}]}, "dodson kw": {"display": "Dodson KW", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32631", "pmid": "40328944", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA400628", "pmid": "40328944", "pos": null, "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "Escherichia coli Genome sequencing and assembly"}]}, "dodsworth ja": {"display": "Dodsworth JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA427267", "pmid": "29235710", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pearl River metagenomics Raw sequence reads"}]}, "doedeh j": {"display": "Doedeh J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "doenyas c": {"display": "Doenyas C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB23052", "pmid": "33510860", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJNA516054", "pmid": "33510860", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Whole metagenomic analysis of the enteric microbiota in children with autism spectrum dis…"}]}, "doernberg sb": {"display": "Doernberg SB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "doherty r": {"display": "Doherty R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB30955", "pmid": "30625669", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic Characterization of Viral and Bacterial Communities in Groundwater Associated…"}]}, "dohle f": {"display": "Dohle F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "dohnalova l": {"display": "Dohnalová L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "doi t": {"display": "Doi T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "dokubo ek": {"display": "Dokubo EK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "dolci ed": {"display": "Dolci ED", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA277916", "pmid": "27896068", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "VAG Mine Pit Pond Metagenome"}]}, "dolja vv": {"display": "Dolja VV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA605028", "pmid": "32690954", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Genome sequencing and assembly"}]}, "dolle-bierke s": {"display": "Dölle-Bierke S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "dome b": {"display": "Dome B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA626477", "pmid": "34002024", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut microbiota Raw sequence reads with and without cancer cachexia"}]}, "domenici e": {"display": "Domenici E", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "domingo mc": {"display": "Domingo MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "domingos j": {"display": "Domingos J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "dominguez bello mg": {"display": "Dominguez Bello MG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}]}, "dominguez-bello mg": {"display": "Dominguez-Bello MG", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB49206", "pmid": "28839072", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}, {"acc": "PRJEB49206", "pmid": "30118385", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}, {"acc": "PRJNA245336", "pmid": "26229982", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}]}, "dommain r": {"display": "Dommain R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573108", "pmid": null, "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Sedimentary DNA from Mubwindi Swamp"}]}, "dommaraju sr": {"display": "Dommaraju SR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB102033", "pmid": "41330369", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lantibiotic-producing bacteria impact microbiome resilience and colonization resistance"}]}, "donald k": {"display": "Donald K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA838575", "pmid": "40623174", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "donald ka": {"display": "Donald KA", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "42311381", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "donat r": {"display": "Donat R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41240", "pmid": "33434506", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Heterogeneous hunter-gatherer and steppe-related ancestries in Late Neolithic and Bell Be…"}]}, "donato d": {"display": "Donato D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA371487", "pmid": "28715422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Leishmania RNA Virus Genomics'' study from French Guiana"}]}, "dong h": {"display": "Dong H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA719915", "pmid": "34465850", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tumor microbiome contributes to an aggressive phenotype in the basal-like subtype of panc…"}]}, "dong j": {"display": "Dong J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA580164", "pmid": "32552447", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome Raw sequence reads"}]}, "dong n": {"display": "Dong N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961946", "pmid": "37386612", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Human Genome sequencing and assembly"}]}, "dong q": {"display": "Dong Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB102033", "pmid": "41330369", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lantibiotic-producing bacteria impact microbiome resilience and colonization resistance"}]}, "dong x": {"display": "Dong X", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1130617", "pmid": "41505541", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA377096", "pmid": "28367229", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soda lake innocuated bioreactors"}, {"acc": "PRJNA377096", "pmid": "31530813", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soda lake innocuated bioreactors"}, {"acc": "PRJNA675914", "pmid": "34302348", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "hydrothermally inactive sulfides metagenomes"}]}, "dong y": {"display": "Dong Y", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB18471", "pmid": "41695140", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamics of the gut microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA398187", "pmid": "41695140", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Targeted loci environmental"}, {"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "donia ms": {"display": "Donia MS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1148165", "pmid": "39947133", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut metagenomic samples of IBD patients"}]}, "donoghue am": {"display": "Donoghue AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA977671", "pmid": "38320392", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Microbiome analysis of cold related stress in poultry"}]}, "donoghue hd": {"display": "Donoghue HD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "donovan sm": {"display": "Donovan SM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB2778", "pmid": "22546241", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}, {"acc": "PRJEB2778", "pmid": "33353204", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}, {"acc": "PRJNA778397", "pmid": "39858934", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal Metagenome Sequences of STRONG Kids 2 Birth Cohort Study"}]}, "dooling sw": {"display": "Dooling SW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}]}, "doornebosch pg": {"display": "Doornebosch PG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "dopazo c": {"display": "Dopazo C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1146994", "pmid": "38556088", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Personal traits, lifestyle decisions, and geography shape our dietary intake and conseque…"}]}, "dopazo j": {"display": "Dopazo J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55075", "pmid": "38524774", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Molecular and phylogenetic characterization of the monkeypox outbreak in Andalusia, Spain"}]}, "dore j": {"display": "Doré J", "group": false, "n_studies": 13, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB23292", "pmid": "29899081", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysbiosis, including decreased gut microbial richness (MGR) and composition modifications…"}, {"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}, {"acc": "PRJEB34992", "pmid": "33771219", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet and gut microbiome interactions of relevance for symptoms in irritable bowel syndrome"}, {"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB43454", "pmid": "35151268", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Long-term diosmectite use does not alter the gut microbiota in adults with chronic diarrh…"}, {"acc": "PRJEB43611", "pmid": "35140493", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in gut microbiota during balneotherapy"}, {"acc": "PRJEB4413", "pmid": "23985875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary intervention impact on gut microbial gene richness based on SOLiD next generation…"}, {"acc": "PRJEB48663", "pmid": "35311446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Increasing the diversity of dietary fibres in a daily-consumed bread modifies gut microbi…"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}, {"acc": "PRJEB7925", "pmid": "25887914", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Quality control of microbiota metagenomics by k-mer analysis with SOLiD sequencing techno…"}]}, "dorey es": {"display": "Dorey ES", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1185841", "pmid": "40232948", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Buccal swab and saliva rinse samples from pregnant women with and without T2DM - Raw sequ…"}]}, "dorrestein p": {"display": "Dorrestein P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1086674", "pmid": "39138352", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Impact of Oral Feedings on the Preterm Infant Microbiome and Metabolome"}]}, "dorrestein pc": {"display": "Dorrestein PC", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}, {"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}, {"acc": "PRJEB52147", "pmid": "35440708", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Association Between Milk Feedings in the Preterm Population, the Microbiome and Risk…"}, {"acc": "PRJNA1013332", "pmid": "38206014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Scalp microbiome study"}, {"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA819194", "pmid": "35606844", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "KRuMBS: Kyphosid Ruminant Microbial Biodigestor of Seaweeds"}]}, "dorsaz s": {"display": "Dorsaz S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB33794", "pmid": "32185143", "pos": "first", "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Changes in Microbiota Profiles After Prolonged Frozen Storage of Stool Suspensions"}]}, "dorshakova n": {"display": "Dorshakova N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "dorta-estremera s": {"display": "Dorta-Estremera S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "dos santos vm": {"display": "dos Santos VM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB3085", "pmid": "23236009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}]}, "dotan i": {"display": "Dotan I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA524170", "pmid": "31605691", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistant microbiome underlies antibiotic therapy in pouchitis"}]}, "douce g": {"display": "Douce G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "doucette gj": {"display": "Doucette GJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA679730", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2018"}, {"acc": "PRJNA702522", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2019"}]}, "doudna ja": {"display": "Doudna JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698986", "pmid": "37973815", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}]}, "dougan g": {"display": "Dougan G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "dowd se": {"display": "Dowd SE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA49397", "pmid": "20962874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Canine gastrointestinal metagenome"}]}, "downing r": {"display": "Downing R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}]}, "doyel d": {"display": "Doyel D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273078", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Noma oral microbiome raw sequence reads"}]}, "doyle b": {"display": "Doyle B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1236482", "pmid": "42020750", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Short-term clinical evolution of Enterococcus faecium"}]}, "doyle sr": {"display": "Doyle SR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": "last", "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "drak alsibai k": {"display": "Drak Alsibai K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "drake mj": {"display": "Drake MJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1088536", "pmid": "39030654", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of dietary zinc on the gut microbiome and resistome of the gestating cow and neon…"}, {"acc": "PRJNA1209098", "pmid": "40597335", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "The effect of dietary zinc on the microbiome and resistome of the gestating sow and neona…"}]}, "drake wp": {"display": "Drake WP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA899808", "pmid": "36543914", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Role of the gut microbiome in lung fibrosis"}]}, "draper j": {"display": "Draper J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "draper la": {"display": "Draper LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA446038", "pmid": "30526683", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}]}, "drautz-moses di": {"display": "Drautz-Moses DI", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA396840", "pmid": "28979798", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomic and metatranscriptomic analysis of saliva reveals disease-associated microbio…"}, {"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}, {"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "dreer m": {"display": "Dreer M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1108908", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1108960", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1109334", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}]}, "dreger p": {"display": "Dreger P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "dreger sa": {"display": "Dreger SA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "drew da": {"display": "Drew DA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "dridi b": {"display": "Dridi B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "dridi l": {"display": "Dridi L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA925842", "pmid": "36750571", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut bacteria glycan metabolism - Raw sequence reads"}]}, "driessen c": {"display": "Driessen C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB89491", "pmid": "42057198", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LucKi Gut - Longitudinal metagenomic sequencing of infant gut microbiota"}]}, "driscoll e": {"display": "Driscoll E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA475137", "pmid": "33245689", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhizopus oryzae Genome sequencing and assembly"}]}, "driscoll he": {"display": "Driscoll HE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA277916", "pmid": "27896068", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "VAG Mine Pit Pond Metagenome"}]}, "driver em": {"display": "Driver EM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1070654", "pmid": "38712930", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Seasonality of Respiratory, Enteric and Urinary Viruses in Wastewater"}, {"acc": "PRJNA1090887", "pmid": "39053521", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human adenovirus outbreak at a university campus monitored by wastewater and clinical sur…"}]}, "droit l": {"display": "Droit L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB7772", "pmid": "25619688", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}]}, "dronda f": {"display": "Dronda F", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB5185", "pmid": "25407519", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysfunctional gut microbiota drives chronic immune activation in HIV-treated individuals"}, {"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "droppers d": {"display": "Droppers D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28209840", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "drou n": {"display": "Drou N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130109", "pmid": "39081889", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome study"}]}, "druesne a": {"display": "Druesne A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}]}, "druyan s": {"display": "Druyan S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA598014", "pmid": "34454634", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Broiler Chicken Cloacal and Litter Meta-genomic Samples"}]}, "dsouza m": {"display": "Dsouza M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA381379", "pmid": "29802288", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut metagenome the kakapo"}, {"acc": "PRJNA755324", "pmid": "35421353", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "du h": {"display": "Du H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA401977", "pmid": "41620634", "pos": "first", "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome from patients with gestational diabetes mellitus"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "du j": {"display": "Du J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37731", "pmid": "39160615", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}]}, "du l": {"display": "Du L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1106097", "pmid": "41411653", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Leuconostoc citreum enhances the colonization ability of Lactiplantibacillus plantarum in…"}, {"acc": "PRJNA1364313", "pmid": "35794664", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Antibiotic impact on preterm infant microbiome maturation"}]}, "du r": {"display": "Du R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA779578", "pmid": "36503572", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Cervus nippon Raw sequence reads"}]}, "du s": {"display": "Du S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633324", "pmid": "33751816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Comparative microbial antibiotic resistome between urban and deep forest environments"}]}, "du y": {"display": "Du Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB39536", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Large-scale single-cell long-read genomics enables high-resolution microbiome profiling (…"}, {"acc": "PRJNA760967", "pmid": "34829986", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Enterococcus faecium Regulates Honey Bee Developmental Genes"}]}, "duan g": {"display": "Duan G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA589343", "pmid": "32912596", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The gut microbiota changes in Chinese children with autism spectrum disorders"}]}, "duan q": {"display": "Duan Q", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "duan s": {"display": "Duan S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858926", "pmid": "37771701", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}]}, "duan y": {"display": "Duan Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB18471", "pmid": "41695140", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamics of the gut microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA398187", "pmid": "41695140", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Targeted loci environmental"}]}, "duar rm": {"display": "Duar RM", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA390646", "pmid": "31423298", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA633576", "pmid": "33479326", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA772730", "pmid": "35071138", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The FOUNDATION Study: Hospital Formulation Of B. infantis EVC001 Utilized In The NICU To…"}]}, "duarte awf": {"display": "Duarte AWF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29861", "pmid": "31550653", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "UNVEILING RESISTOME PROFILES IN THE SEDIMENTS OF AN ANTARCTIC VOLCANIC ISLAND"}]}, "duarte cm": {"display": "Duarte CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA437202", "pmid": "32438323", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Red Sea coral metagenomes"}]}, "duarte f": {"display": "Duarte F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "duarte gas": {"display": "Duarte GAS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA649484", "pmid": "34389536", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "duarte s": {"display": "Duarte S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "35750157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "36131032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "duarte vds": {"display": "Duarte VdS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA950968", "pmid": "38054728", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "HoliCow"}]}, "dubberke er": {"display": "Dubberke ER", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1067813", "pmid": "39731916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C. difficile-associated mouse and human fecal metagenomes"}]}, "dube fs": {"display": "Dube FS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37312", "pmid": "33072693", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "The utility of shotgun metagenomics to investigate the carriage of, and longitudinal chan…"}]}, "dubecz a": {"display": "Dubecz A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644779", "pmid": "33384459", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "yogurt and kefir seed culture sequencing"}]}, "dubinkina v": {"display": "Dubinkina V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": null, "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "dubinsky v": {"display": "Dubinsky V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA524170", "pmid": "31605691", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistant microbiome underlies antibiotic therapy in pouchitis"}]}, "dubois l": {"display": "Dubois L", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB74322", "pmid": "38870906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "ducarmon qr": {"display": "Ducarmon QR", "group": false, "n_studies": 12, "studies": [{"acc": "PRJDB4176", "pmid": "39885121", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1690", "pmid": "39885121", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB21528", "pmid": "39885121", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB22893", "pmid": "39885121", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome impacts response to PD-1 immunotherapy in melanoma patients"}, {"acc": "PRJEB27005", "pmid": "39885121", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB39223", "pmid": "39885121", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB44119", "pmid": "35659906", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut colonisation by extended-spectrum β-lactamase-producing Escherichia coli and its asso…"}, {"acc": "PRJEB44737", "pmid": "34126062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB44737", "pmid": "39885121", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}, {"acc": "PRJNA231909", "pmid": "39885121", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "39885121", "pos": "last", "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA48479", "pmid": "39885121", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "duchene s": {"display": "Duchene S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}, {"acc": "PRJNA348754", "pmid": "27939314", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}, {"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "ducher a": {"display": "Ducher A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685914", "pmid": "33854066", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiota-based markers predictive of development of Clostridioides difficile infection"}]}, "dudas g": {"display": "Dudas G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA679286", "pmid": "34320399", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Global genome analyses reveal a vast and dynamic anellovirus landscape within the human v…"}]}, "dudek nk": {"display": "Dudek NK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726636", "pmid": "35382031", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sea otter (Enhydra lutris) Raw sequence reads"}]}, "dudley jt": {"display": "Dudley JT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "duerschmied d": {"display": "Duerschmied D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "dufault-thompson k": {"display": "Dufault-Thompson K", "group": false, "n_studies": 40, "studies": [{"acc": "PRJEB1220", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB22207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJEB32135", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9576", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA188481", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA221723", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA305507", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA319574", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA322188", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA328899", "pmid": "38172624", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA398089", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA436562", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA485056", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA489090", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA504891", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "41118772", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA510445", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA542703", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA557731", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA633576", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA715601", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA853174", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "duff c": {"display": "Duff C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019894", "pmid": "37835668", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Bos taurus breed:Angus Targeted Locus (Loci)"}]}, "duffy pr": {"display": "Duffy PR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "duflou a": {"display": "Duflou A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46777", "pmid": "25836986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Ulcerative Colitis."}]}, "dugan vg": {"display": "Dugan VG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA623215", "pmid": "32349121", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing to evaluate massively multiplexed detection with Cas13"}]}, "duggan at": {"display": "Duggan AT", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA348754", "pmid": "27939314", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}, {"acc": "PRJNA352376", "pmid": "28072390", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}]}, "duisbayeva a": {"display": "Duisbayeva A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA949528", "pmid": "37308527", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}]}, "duisebayeva a": {"display": "Duisebayeva A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1217583", "pmid": "40299456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic predictors of childhood obesity, cross-talk with maternal microflora"}, {"acc": "PRJNA949528", "pmid": "40299456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}]}, "duke f": {"display": "Duke F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "dulai p": {"display": "Dulai P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}]}, "dulai ps": {"display": "Dulai PS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}]}, "dulencin a": {"display": "Dulencin A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}]}, "dulka e": {"display": "Dulka E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA626477", "pmid": "34002024", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut microbiota Raw sequence reads with and without cancer cachexia"}]}, "duller s": {"display": "Duller S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1108908", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1108960", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1109334", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}]}, "dulong c": {"display": "DuLong C", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB15371", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJNA231909", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "30661755", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA356102", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA48479", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA504891", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA610982", "pmid": "33308267", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Determinants of S. aureus carriage in the developing infant nasal microbiome"}]}, "dumas me": {"display": "Dumas ME", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "dunaif a": {"display": "Dunaif A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "duncan a": {"display": "Duncan A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA32089", "pmid": "19043404", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}]}, "duncan ae": {"display": "Duncan AE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA145005", "pmid": "22030749", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}]}, "duncan cn": {"display": "Duncan CN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA787952", "pmid": "35239511", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}]}, "duncan js": {"display": "Duncan JS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA935534", "pmid": "37700351", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Calf microbiome features associated with susceptibility to C.parvum infection"}]}, "duncan s": {"display": "Duncan S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "duncan-lowey b": {"display": "Duncan-Lowey B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA390646", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA633576", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}]}, "dungan cm": {"display": "Dungan CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1201756", "pmid": "34569067", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome Metagenome"}]}, "dunivin tk": {"display": "Dunivin TK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA492298", "pmid": "31146755", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Surface soil microbial communities from active vent of coal mine fire in Centralia Pennsy…"}]}, "dunlap k": {"display": "Dunlap K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "37938270", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "dunlap kl": {"display": "Dunlap KL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "36220843", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "dunlop al": {"display": "Dunlop AL", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46659", "pmid": "38782975", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB46659", "pmid": "41265504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJNA725416", "pmid": "33996627", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Emory University African American Vaginal, Oral, and Gut Microbiome in Pregnancy Cohort S…"}, {"acc": "PRJNA747761", "pmid": "37938667", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Atlanta, USA and Maputo, Mozambique Children gut microbiome Metagenome"}]}, "dunn j": {"display": "Dunn J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "dunn jcy": {"display": "Dunn JCY", "group": false, "n_studies": 7, "studies": [{"acc": "PRJNA273761", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA327106", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA396794", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA63661", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "dunn ka": {"display": "Dunn KA", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB29237", "pmid": "35967843", "pos": "first", "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}, {"acc": "PRJEB29237", "pmid": "36909730", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}, {"acc": "PRJEB41463", "pmid": "35967843", "pos": "first", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB41463", "pmid": "36909730", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB59728", "pmid": "36909730", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "This study examined pediatric patients undergoing treatment for various cancers and exami…"}]}, "dunn m": {"display": "Dunn M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9783", "pmid": "26351665", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing Chalcolithic human remains from El Portalón, Spain"}]}, "dunne-castagna v": {"display": "Dunne-Castagna V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15633", "pmid": "35406036", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}]}, "dunny gm": {"display": "Dunny GM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "duong cpm": {"display": "Duong CPM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "duong jt": {"display": "Duong JT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177516", "pmid": "40483244", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Changes in Fecal Microbiota in Adults with Cystic Fibrosis with 6 Months of CFTR Modulato…"}]}, "duong vt": {"display": "Duong VT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21259", "pmid": "41144256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}, {"acc": "PRJEB21259", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}]}, "dupont cl": {"display": "Dupont CL", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA383868", "pmid": "28910633", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "30482830", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA475137", "pmid": "33245689", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhizopus oryzae Genome sequencing and assembly"}, {"acc": "PRJNA551026", "pmid": "32130897", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Monogenic skin disease driven by staphylococcal dysbiosis"}, {"acc": "PRJNA649484", "pmid": "34389536", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "duque lm": {"display": "Duque LM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "duque mp": {"display": "Duque MP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "duraffour s": {"display": "Duraffour S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "durand s": {"display": "Durand S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "duranti s": {"display": "Duranti S", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA287207", "pmid": "26231653", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}, {"acc": "PRJNA422569", "pmid": "30126456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}]}, "durig r": {"display": "Dürig R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35490", "pmid": "32187006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tick-Borne Relapsing Fever caused by Borrelia persica in a Traveler returning from Centra…"}]}, "duru ic": {"display": "Duru IC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59350", "pmid": "39143178", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "deep shotgun DNA sequencing of 136 patient’s fecal samples (Parkinson vs Control)"}, {"acc": "PRJEB59350", "pmid": "40258842", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "deep shotgun DNA sequencing of 136 patient’s fecal samples (Parkinson vs Control)"}]}, "dussous i": {"display": "Dussous I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48663", "pmid": "35311446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Increasing the diversity of dietary fibres in a daily-consumed bread modifies gut microbi…"}]}, "dutilh be": {"display": "Dutilh BE", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB23207", "pmid": "29468143", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic characterization of the human intestinal microbiota in faecal samples from ST…"}, {"acc": "PRJEB87602", "pmid": "37243505", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteria in colitis associated cancer development"}, {"acc": "PRJNA80601", "pmid": "23554892", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterization of the nasopharyngeal virome in patients with influenza-like illness of…"}]}, "dutoit v": {"display": "Dutoit V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43581", "pmid": "34737977", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}]}, "dutour o": {"display": "Dutour O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA348754", "pmid": "27939314", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}]}, "dutta a": {"display": "Dutta A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39023", "pmid": "24303043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Treatment of recurrent Clostridioides difficile infection with Fecal Microbiota Transplan…"}, {"acc": "PRJEB39023", "pmid": "24440222", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Treatment of recurrent Clostridioides difficile infection with Fecal Microbiota Transplan…"}]}, "dutta s": {"display": "Dutta S", "group": false, "n_studies": 4, "studies": [{"acc": "PRJDB10675", "pmid": "36376441", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "International collaborative studies on the prevention, diagnosis, and drug discovery for…"}, {"acc": "PRJEB39023", "pmid": "24303043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Treatment of recurrent Clostridioides difficile infection with Fecal Microbiota Transplan…"}, {"acc": "PRJNA1304237", "pmid": "41017911", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota Signatures in Indian Preterm Infants with Necrotizing Enterocolitis"}, {"acc": "PRJNA945262", "pmid": "37067419", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Gut Microbiome in a mother child paired design"}]}, "dutta sk": {"display": "Dutta SK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39023", "pmid": "24440222", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Treatment of recurrent Clostridioides difficile infection with Fecal Microbiota Transplan…"}]}, "dutta t": {"display": "Dutta T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "duval x": {"display": "Duval X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "dvoretzky i": {"display": "Dvoretzky I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "dwibedi c": {"display": "Dwibedi C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42304", "pmid": "31843589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differences in Fecal Microbiomes and Metabolomes of People With vs Without Irritable Bowe…"}]}, "dworzynski p": {"display": "Dworzynski P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}]}, "dwyer de": {"display": "Dwyer DE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "dybdahl-sissoko n": {"display": "Dybdahl-Sissoko N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27927929", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "dylla np": {"display": "Dylla NP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB102033", "pmid": "41330369", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lantibiotic-producing bacteria impact microbiome resilience and colonization resistance"}]}, "dzidic m": {"display": "Dzidic M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1227883", "pmid": "31053102", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}]}, "dzieciol m": {"display": "Dzieciol M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "dziegiel ah": {"display": "Dziegiel AH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21259", "pmid": "41144256", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}, {"acc": "PRJEB21259", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}]}, "dzunkova m": {"display": "Džunková M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA492716", "pmid": "31384000", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}]}, "e silva ff": {"display": "E Silva FF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "earl am": {"display": "Earl AM", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "40328944", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA1138246", "pmid": "40755247", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal metagenomes of Peruvian children"}, {"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}, {"acc": "PRJNA400628", "pmid": "40328944", "pos": null, "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "Escherichia coli Genome sequencing and assembly"}, {"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}, {"acc": "PRJNA726052", "pmid": "35422497", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effects of drinking water chlorination on childrens intestinal flora and resistomes in Dh…"}]}, "earth hologenome initiative consortium": {"display": "Earth Hologenome Initiative Consortium", "group": true, "n_studies": 2, "studies": [{"acc": "PRJEB76898", "pmid": "38777633", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "EHI Data Release 1"}, {"acc": "PRJEB77033", "pmid": "38777633", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "EHI data release 2"}]}, "eaton v": {"display": "Eaton V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}]}, "ebdrup bh": {"display": "Ebdrup BH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA916259", "pmid": "40140473", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}]}, "ebel av": {"display": "Ebel AV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "eberhardt jf": {"display": "Eberhardt JF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "eberhart cg": {"display": "Eberhart CG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA745199", "pmid": "29340642", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics sequencing of infectious microbes from ocular sarcoidosis tissue specimens"}]}, "ebert mp": {"display": "Ebert MP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "ebo b": {"display": "Ebo B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "echelard y": {"display": "Echelard Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA679286", "pmid": "34320399", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Global genome analyses reveal a vast and dynamic anellovirus landscape within the human v…"}]}, "echo children’s respiratory and environmental workgroup": {"display": "ECHO Children’s Respiratory and Environmental Workgroup", "group": true, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "echo cohort consortium": {"display": "ECHO Cohort Consortium", "group": true, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "38782975", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB46659", "pmid": "41265504", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "ecke f": {"display": "Ecke F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA795992", "pmid": "35336963", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenome of potential vectors (ticks, mosquitos, etc.)"}]}, "eckenberger j": {"display": "Eckenberger J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA977671", "pmid": "38320392", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Microbiome analysis of cold related stress in poultry"}]}, "ecker l": {"display": "Ecker L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "41118772", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "eckert j": {"display": "Eckert J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "ecklu-mensah g": {"display": "Ecklu-Mensah G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1086674", "pmid": "39138352", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Impact of Oral Feedings on the Preterm Infant Microbiome and Metabolome"}]}, "edbom devall a": {"display": "Edbom Devall A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB100868", "pmid": "42644416", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "PREVENT 1: Gut microbiota development and health in early life"}]}, "edens tj": {"display": "Edens TJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB51728", "pmid": "39341154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJNA297252", "pmid": "26975510", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Intestinal microbiota dynamics in hospitalized patients"}]}, "edfeldt g": {"display": "Edfeldt G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37731", "pmid": "35553675", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "39015337", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}]}, "edinger m": {"display": "Edinger M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "edlund a": {"display": "Edlund A", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB29169", "pmid": "31222023", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Establishing microbial composition measurement standards with reference frames"}, {"acc": "PRJNA289925", "pmid": "26701081", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candidatus [Bacteroides] periocalifornicus isolate:12B Genome sequencing and assembly"}, {"acc": "PRJNA398963", "pmid": "30522530", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "oral bacterial species growing in a complex biofilm Raw sequence reads"}, {"acc": "PRJNA525517", "pmid": "30975748", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Klebsiella and Providencia notch a tag-team victory in a battle royale of oral bacteria"}, {"acc": "PRJNA624185", "pmid": "33239396", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Deep metagenomics examines the oral microbiome during advanced dental caries in children,…"}]}, "edner n": {"display": "Edner N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64634", "pmid": "32067542", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Fatal encephalitis associated with coronavirus OC43 in an immunocompromised child"}]}, "edris s": {"display": "Edris S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}]}, "edwards ra": {"display": "Edwards RA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA729051", "pmid": "34158595", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Growth faltering regardless of chronic diarrhea is associated with mucosal immune dysfunc…"}]}, "edwards t": {"display": "Edwards T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63570", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Klebsiella_transmission_and_immunity_on_Chatinkha_nursery__Neo_TRACK_"}]}, "egan m": {"display": "Egan M", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB32631", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA322188", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA339914", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA475246", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "egert m": {"display": "Egert M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47581", "pmid": "32423128", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic Analysis of Regularly Microwave-Treated and Untreated Domestic Kitchen Sponges"}]}, "eggermont a": {"display": "Eggermont A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "eggers j": {"display": "Eggers J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39474439", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "eggers s": {"display": "Eggers S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39474439", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}, {"acc": "PRJNA975184", "pmid": "39640590", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "eggesbo m": {"display": "Eggesbø M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB29078", "pmid": "30352933", "pos": "last", "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJEB29078", "pmid": "30813950", "pos": "last", "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJEB29078", "pmid": "37874156", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA296814", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA322188", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}]}, "egholm m": {"display": "Egholm M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA32089", "pmid": "19043404", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}, {"acc": "PRJNA43253", "pmid": "20363958", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human fecal microbiome"}]}, "egli a": {"display": "Egli A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35490", "pmid": "32187006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tick-Borne Relapsing Fever caused by Borrelia persica in a Traveler returning from Centra…"}]}, "ehlers b": {"display": "Ehlers B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "ehrenfels b": {"display": "Ehrenfels B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675607", "pmid": null, "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Biogeochemistry study on Lake Tanganyika in Tanzania"}]}, "ehricht r": {"display": "Ehricht R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA799199", "pmid": "35256725", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Evaluation of microbiome enrichment and host DNA depletion in human vaginal samples using…"}]}, "ehrlich d": {"display": "Ehrlich D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "ehrlich s": {"display": "Ehrlich S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43611", "pmid": "35140493", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in gut microbiota during balneotherapy"}]}, "ehrlich sd": {"display": "Ehrlich SD", "group": false, "n_studies": 20, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB23292", "pmid": "29899081", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysbiosis, including decreased gut microbial richness (MGR) and composition modifications…"}, {"acc": "PRJEB27799", "pmid": "30478291", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}, {"acc": "PRJEB36461", "pmid": "32360114", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Laparoscopic Roux-en-Y gastric bypass and sleeve gastrectomy on gut microbiota:…"}, {"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB43454", "pmid": "35151268", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Long-term diosmectite use does not alter the gut microbiota in adults with chronic diarrh…"}, {"acc": "PRJEB4413", "pmid": "23985875", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary intervention impact on gut microbial gene richness based on SOLiD next generation…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB48663", "pmid": "35311446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Increasing the diversity of dietary fibres in a daily-consumed bread modifies gut microbi…"}, {"acc": "PRJEB51635", "pmid": "36604748", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}, {"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJEB52431", "pmid": "36971547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In Vitro Modelling of Oral Microbial Invasion in the Human Colon"}, {"acc": "PRJEB59994", "pmid": "37892187", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evaluation of an Adapted Semi-Automated DNA Extraction for Human Salivary Shotgun Metagen…"}, {"acc": "PRJEB6314", "pmid": "25496341", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Construction of a dairy microbial genome catalog opens new perspectives for the metagenom…"}, {"acc": "PRJEB7925", "pmid": "25887914", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Quality control of microbiota metagenomics by k-mer analysis with SOLiD sequencing techno…"}, {"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "eibach d": {"display": "Eibach D", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "eifel pj": {"display": "Eifel PJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "eisen ja": {"display": "Eisen JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA431961", "pmid": "39696719", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Geothermal fumarole subsurface microbial communities from Mt. Erebus, Antarctica"}]}, "eisenhofer r": {"display": "Eisenhofer R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA688065", "pmid": "33811235", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effectiveness of decontamination protocols when analyzing ancient DNA preserved in dental…"}]}, "eismann k": {"display": "Eismann K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB3085", "pmid": "23236009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}]}, "eklund ac": {"display": "Eklund AC", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB42539", "pmid": "34756056", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "FUT2/FUT3 genes sequences and nasopharyngeal shotgun metagenomics from the Microbiota and…"}, {"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}, {"acc": "PRJEB54707", "pmid": "35990340", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, 2-HMO vs. control formula"}]}, "ekselius l": {"display": "Ekselius L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62678", "pmid": "31641004", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "BASIC: Biology, Affect, Stress, Imaging and Cognition in pregnancy"}]}, "ekstrand c": {"display": "Ekstrand C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "el aiba i": {"display": "El Aiba I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1262354", "pmid": "41603547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMBARK - Establishing a Monitoring Baseline for Antimicrobial Resistance in Key environme…"}]}, "el alam mb": {"display": "El Alam MB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "el-ansary mr": {"display": "El-Ansary MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA771993", "pmid": "34827320", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Antimicrobial Discovery from Alcaligenes faecalis A Metagenomics-Nanopore sequencing Appr…"}]}, "el-hadidi m": {"display": "El-Hadidi M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB10391", "pmid": "26369961", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of ciprofloxacin pertubation on the intestinal resistome and microbiota in two hea…"}, {"acc": "PRJEB12272", "pmid": "27984120", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A statistical test for the detection of inhomogeneity in metagenomic samples"}, {"acc": "PRJEB27308", "pmid": "30974084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome metagenome analysis of stool samples from individuals with low and high saliva…"}]}, "el-himri rk": {"display": "El-Himri RK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "el-nachef n": {"display": "El-Nachef N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": "35365713", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}, {"acc": "PRJNA737472", "pmid": "39122767", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}, {"acc": "PRJNA737472", "pmid": null, "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "el-nezami h": {"display": "El-Nezami H", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1151597", "pmid": "40405038", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Probiotics mixture suppresses MASLD-associated hepatocellular carcinoma"}, {"acc": "PRJNA1229795", "pmid": "40691217", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Theabrownin, in combination with Zearalenone, suppressed colitis-associated colorectal ca…"}, {"acc": "PRJNA1366117", "pmid": "39489290", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The Role of Amino Acid-Derived Metabolites in Non-alcoholic fatty liver disease (NAFLD) D…"}, {"acc": "PRJNA1366117", "pmid": "40015656", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The Role of Amino Acid-Derived Metabolites in Non-alcoholic fatty liver disease (NAFLD) D…"}, {"acc": "PRJNA1367284", "pmid": "38575146", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Probiotics mixture suppresses diet-induced MASLD: Fecal metagenomics of mice sample"}, {"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}]}, "elbere i": {"display": "Elbere I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62817", "pmid": "38868903", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome encoded purine and amino acid pathways present prospective biomarkers for…"}]}, "elberling b": {"display": "Elberling B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "elias je": {"display": "Elias JE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49206", "pmid": "28839072", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}]}, "elijah e": {"display": "Elijah E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}]}, "elinav e": {"display": "Elinav E", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}, {"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB54704", "pmid": "36914893", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "elison jt": {"display": "Elison JT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63183", "pmid": "37457984", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Interactions Between Bifidobacterium and Bacteroides and Human Milk Oligosaccharides and…"}]}, "elkins ca": {"display": "Elkins CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA336518", "pmid": "29954907", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA336518", "pmid": "29954914", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}]}, "elkrief a": {"display": "Elkrief A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA946744", "pmid": "39666007", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Homo sapiens metagenomic sequences"}]}, "elli l": {"display": "Elli L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "elliott j": {"display": "Elliott J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA836336", "pmid": "36179550", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenome of MSM prior to and following HIV seroconversion"}]}, "elliott rj": {"display": "Elliott RJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "elmahi bme": {"display": "Elmahi BME", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445932", "pmid": "29297933", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA445932", "pmid": "30121305", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}]}, "elmassry mm": {"display": "Elmassry MM", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB6456", "pmid": "33411719", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1148165", "pmid": "39947133", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut metagenomic samples of IBD patients"}, {"acc": "PRJNA48479", "pmid": "33411719", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "elnaggar jh": {"display": "Elnaggar JH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "eloit m": {"display": "Eloit M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1011899", "pmid": "40155393", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Collaborative spiking study 2B for high throughput sequencing for virus detection"}]}, "elovitz ma": {"display": "Elovitz MA", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA451186", "pmid": "30376898", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Placenta Microbiome"}, {"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "elovskaya is": {"display": "Elovskaya IS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA875570", "pmid": "38217803", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of microbial communities in gradient zones of the sedimentary strata…"}]}, "eltan sb": {"display": "Eltan SB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "eltayeb wn": {"display": "Eltayeb WN", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA771993", "pmid": "34827320", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Antimicrobial Discovery from Alcaligenes faecalis A Metagenomics-Nanopore sequencing Appr…"}, {"acc": "PRJNA785410", "pmid": "35052889", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Antimicrobial Discovery from Paenibacillus ehimensis A Metagenomics-Nanopore sequencing A…"}]}, "eltokhy ma": {"display": "Eltokhy MA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA771993", "pmid": "34827320", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Antimicrobial Discovery from Alcaligenes faecalis A Metagenomics-Nanopore sequencing Appr…"}, {"acc": "PRJNA785410", "pmid": "35052889", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Antimicrobial Discovery from Paenibacillus ehimensis A Metagenomics-Nanopore sequencing A…"}]}, "embleton nd": {"display": "Embleton ND", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB39610", "pmid": "39216480", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB49383", "pmid": "36163498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm Neonatal Stool Metagenomes"}]}, "emerick n": {"display": "Emerick N", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "emerson jb": {"display": "Emerson JB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA81851", "pmid": "22773627", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Hypersaline Lake Metagenome"}, {"acc": "PRJNA81851", "pmid": "23853523", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Hypersaline Lake Metagenome"}]}, "emery mv": {"display": "Emery MV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA348754", "pmid": "27939314", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}]}, "emond ja": {"display": "Emond JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "29973274", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "emond mj": {"display": "Emond MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA860728", "pmid": "36121157", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "GenCap-Seq Selectively Enriches Bacterial DNA and Enables Genome-wide Measurement of Intr…"}]}, "emonet s": {"display": "Emonet S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB20595", "pmid": "30065706", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hepatic brucelloma studied by next generation sequencing"}, {"acc": "PRJEB20877", "pmid": "28930150", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Detection of bacterial pathogens from broncho-alveolar lavage by next-generation sequenci…"}, {"acc": "PRJEB25228", "pmid": "31616669", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Cardiobacterium hominis"}]}, "enault f": {"display": "Enault F", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB46489", "pmid": "35848130", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In situ characterization of the genomic content of viruses of methanogenic archaea in ana…"}, {"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}]}, "endegue-zanga mc": {"display": "Endegue-Zanga MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27927929", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "endia study group consortium": {"display": "ENDIA Study Group Consortium", "group": true, "n_studies": 1, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}]}, "endimiani a": {"display": "Endimiani A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA931814", "pmid": "37720151", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistome and microbiome analysis of stool samples from healthy people using shotgun meta…"}, {"acc": "PRJNA931814", "pmid": "39198442", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistome and microbiome analysis of stool samples from healthy people using shotgun meta…"}]}, "endoh t": {"display": "Endoh T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA692334", "pmid": "34641955", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Recovery of high-quality assembled genomes via single-cell genome-guided binning of metag…"}]}, "eng a": {"display": "Eng A", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1015704", "pmid": "40042126", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal and oropharyngeal microbiota from infants with cystic fibrosis on and off beta-lact…"}, {"acc": "PRJNA510445", "pmid": "31959989", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA510445", "pmid": "34525965", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA516442", "pmid": "30784601", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Depletion of human DNA from complex clinical samples for metagenomic sequencing"}, {"acc": "PRJNA530252", "pmid": "32631930", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effect of cycled, inhaled tobramycin on the sputum microbiome in cystic fibrosis"}]}, "engel k": {"display": "Engel K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202388", "pmid": "22056233", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}, {"acc": "PRJNA202388", "pmid": "22180823", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}, {"acc": "PRJNA202388", "pmid": "24495694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}, {"acc": "PRJNA202388", "pmid": "24911009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}, {"acc": "PRJNA202388", "pmid": "25028422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "engel p": {"display": "Engel P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA599270", "pmid": "32179689", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Honey bee gut virome"}]}, "engel sm": {"display": "Engel SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA876771", "pmid": "36975801", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Vaginal microbiome metagenome inference accuracy: differential measurement error accordin…"}]}, "engelstad hj": {"display": "Engelstad HJ", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA301903", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA701982", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic-driven intestinal dysbiosis in paediatric SBS alters microbiome functions and…"}]}, "engelthaler dm": {"display": "Engelthaler DM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "28721231", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "engevik m": {"display": "Engevik M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA400259", "pmid": "33328537", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human Milk Microbiome Metagenome"}]}, "england sk": {"display": "England SK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA911205", "pmid": "37726348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Psychosocial adversity experienced in utero and early life is associated with variation i…"}]}, "englander h": {"display": "Englander H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}]}, "english el": {"display": "English EL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA277916", "pmid": "27896068", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "VAG Mine Pit Pond Metagenome"}]}, "englund ja": {"display": "Englund JA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}, {"acc": "PRJNA338014", "pmid": "27795347", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28379561", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28838146", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "engstrand l": {"display": "Engstrand L", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}, {"acc": "PRJEB37731", "pmid": "33208514", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "33816334", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "35553675", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "39015337", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "39160615", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "42203854", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB38528", "pmid": "42203854", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJNA46337", "pmid": "28274256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "engstrom g": {"display": "Engström G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}, {"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "engvall j": {"display": "Engvall J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "enigbe r": {"display": "Enigbe R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "enk jm": {"display": "Enk JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352376", "pmid": "28072390", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}]}, "ennis d": {"display": "Ennis D", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB32631", "pmid": "38291346", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "38291346", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1445880", "pmid": "42010622", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome samples Gastrointestinal Microbiome and Allergic Proctocolitis coho…"}, {"acc": "PRJNA352475", "pmid": "38291346", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA475246", "pmid": "38291346", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA497734", "pmid": "38291346", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA994433", "pmid": "38291346", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Variability of Bifidobacterium Species in the Infant Gut is Independent of M…"}]}, "ennis s": {"display": "Ennis S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "enokida t": {"display": "Enokida T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "ensenauer r": {"display": "Ensenauer R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "epimakhov a": {"display": "Epimakhov A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "ercolini d": {"display": "Ercolini D", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39407346", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39095404", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "39095404", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "eren am": {"display": "Eren AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701961", "pmid": "37069665", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA701961", "pmid": null, "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "ergelen r": {"display": "Ergelen R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "erickson ar": {"display": "Erickson AR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA209131", "pmid": "23976882", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacter…"}]}, "erickson bk": {"display": "Erickson BK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA209131", "pmid": "23976882", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacter…"}]}, "eriksen c": {"display": "Eriksen C", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB6456", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB84944", "pmid": "40885737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of 56 mother-infant dyads from the ALADDIN birth cohort"}, {"acc": "PRJEB97976", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome maturation during weaning"}, {"acc": "PRJEB97980", "pmid": "42203770", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential impact of doxycycline treatment on antimicrobial resistance genes in the enteri…"}, {"acc": "PRJEB98012", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Creeping Fat"}, {"acc": "PRJEB98069", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Distinct Microbial and Resistome Signatures Differentiate Healthy and Inflamed Ileal Pouc…"}, {"acc": "PRJNA633381", "pmid": "33662387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "IgA deficiency microbiota"}]}, "eriksson jg": {"display": "Eriksson JG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}]}, "eriksson m": {"display": "Eriksson M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "erler d": {"display": "Erler D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}]}, "erlichman j": {"display": "Erlichman J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "ernst se": {"display": "Ernst SE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA793907", "pmid": "35908379", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial 16S rRNA gene sequences from fecal samples of prostate cancer patients treated…"}]}, "eromon p": {"display": "Eromon P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "erpelding n": {"display": "Erpelding N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1121316", "pmid": "37060545", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}]}, "errera rm": {"display": "Errera RM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA679730", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2018"}, {"acc": "PRJNA702522", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2019"}]}, "ertem d": {"display": "Ertem D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "erwin pm": {"display": "Erwin PM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA515489", "pmid": "31086829", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genomic collection of symbionts associated with Petrosia ficiformis"}]}, "esaiassen e": {"display": "Esaiassen E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB29052", "pmid": "30505830", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJNA898628", "pmid": "37187112", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "PINGU Fecal samples Metagenome"}]}, "esari d": {"display": "Esari D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "escobedo m": {"display": "Escobedo M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884103", "pmid": "37134153", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}]}, "escudier b": {"display": "Escudier B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "escuriet r": {"display": "Escuriet R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB74322", "pmid": "38870906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJNA1227883", "pmid": "31053102", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}]}, "eskew s": {"display": "Eskew S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA630999", "pmid": "33665175", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}]}, "esmaili t": {"display": "Esmaili T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37731", "pmid": "42203854", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB38528", "pmid": "42203854", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}]}, "esona m": {"display": "Esona M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "34673119", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "esparteiro d": {"display": "Esparteiro D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1104421", "pmid": "39078043", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Serum Bile Acids profiles are altered without change of the Gut Microbiota composition fo…"}, {"acc": "PRJNA1111312", "pmid": "39895875", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun metagenomics reveals Bacteroides stercoris as a fecal biomarker depleted in late-…"}]}, "esperalba j": {"display": "Esperalba J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "espinal p": {"display": "Espinal P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA590575", "pmid": "32317653", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Bacteriophages in human samples"}]}, "espinosa a": {"display": "Espinosa A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28818890", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "espinosa ca": {"display": "Espinosa CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "espinosa-salinas i": {"display": "Espinosa-Salinas I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "espinoza jl": {"display": "Espinoza JL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA383868", "pmid": "28910633", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "30482830", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA649484", "pmid": "34389536", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "espinoza-heredia c": {"display": "Espinoza-Heredia C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "42311381", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "espiricueta-candelaria f": {"display": "Espiricueta-Candelaria F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1260751", "pmid": "41536238", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal Obesity Alters Human Milk Oligosaccharides Content and Promotes Early Acquisitio…"}]}, "esquer garrigos z": {"display": "Esquer Garrigos Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA518922", "pmid": "31577814", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metegenomic sequencing of blood from patients with vector-borne diseases"}]}, "esquerre d": {"display": "Esquerré D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA438436", "pmid": "31270376", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The gut microbiota influence the basal physiological parameters in equine athletes"}]}, "esser s": {"display": "Esser S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA947377", "pmid": "38366600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Establishment of a non-Westernized gut microbiota in men who have sex with men is associa…"}]}, "esser sp": {"display": "Esser SP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA811790", "pmid": "37816747", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial and viral dispersal along the natural water cycle"}]}, "estaki m": {"display": "Estaki M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA597371", "pmid": "34193290", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal Selective Pressure and Coevolution Project Part 4 human placebo Metagenome"}, {"acc": "PRJNA602729", "pmid": "34079079", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}]}, "estellat c": {"display": "Estellat C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24843", "pmid": "30714464", "pos": null, "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "The intestinal microbiota predisposes to traveller’s diarrhoea and to the carriage of mul…"}]}, "estes mk": {"display": "Estes MK", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "39282326", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "estrada v": {"display": "Estrada V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB5185", "pmid": "25407519", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysfunctional gut microbiota drives chronic immune activation in HIV-treated individuals"}]}, "estrada-garcia i": {"display": "Estrada-Garcia I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "estrela ab": {"display": "Estrela AB", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB14383", "pmid": "34551287", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Oral microbiome samples from the Philippines"}, {"acc": "PRJNA275349", "pmid": "34551287", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA48479", "pmid": "34551287", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "estudillo l": {"display": "Estudillo L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "etienne-mesmin l": {"display": "Etienne-Mesmin L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52431", "pmid": "36971547", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In Vitro Modelling of Oral Microbial Invasion in the Human Colon"}]}, "ettinger cl": {"display": "Ettinger CL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA925931", "pmid": null, "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Invasive plant species interact with drought to shift key functions and families in the n…"}]}, "euler s": {"display": "Euler S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}]}, "evander m": {"display": "Evander M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA795992", "pmid": "35336963", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenome of potential vectors (ticks, mosquitos, etc.)"}]}, "evans c": {"display": "Evans C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB51728", "pmid": "39341154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "evans dr": {"display": "Evans DR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "evans j": {"display": "Evans J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA943417", "pmid": "37919016", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Six novel misos"}]}, "evans jd": {"display": "Evans JD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA992639", "pmid": "38876584", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Novel misos shape distinct microbial ecologies"}]}, "evans nj": {"display": "Evans NJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273078", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Noma oral microbiome raw sequence reads"}]}, "evans p": {"display": "Evans P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1200893", "pmid": "41809988", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}]}, "evans pn": {"display": "Evans PN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA907943", "pmid": "36949471", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Characterisation and isolation of novel host-associated Methanocorpusculum species from n…"}]}, "even dar r": {"display": "Even Dar R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA628604", "pmid": "32511695", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}]}, "eventov friedman s": {"display": "Eventov Friedman S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1312123", "pmid": "41203618", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Development of the preterm infant gut and gastric residuals microbiome"}]}, "everson tm": {"display": "Everson TM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "36632065", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "evesque l": {"display": "Evesque L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB110927", "pmid": "39454892", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Durigast_F_prausnitzii_ICI_gastric_adenocarcinoma"}]}, "exter k": {"display": "Exter K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "ezzat l": {"display": "Ezzat L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA781406", "pmid": "35444202", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Vanishing Glaciers Project"}]}, "fabbrini m": {"display": "Fabbrini M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA914532", "pmid": "36639555", "pos": "first", "reason_code": null, "src": "B", "status": "human_review", "title_short": "Levofloxacin prophylaxis and parenteral nutrition have a detrimental effect on intestinal…"}, {"acc": "PRJNA991320", "pmid": "37794974", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Depression in older adults"}]}, "faber kn": {"display": "Faber KN", "group": false, "n_studies": 10, "studies": [{"acc": "PRJDB4176", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1690", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB21528", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB22893", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome impacts response to PD-1 immunotherapy in melanoma patients"}, {"acc": "PRJEB27005", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB39223", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB44737", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJNA231909", "pmid": "39885121", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "39885121", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA48479", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "fabra m": {"display": "Fabra M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "fabregas n": {"display": "Fàbregas N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42270", "pmid": "33957869", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Long-read metagenomics to retrieve high-quality metagenome-assembled genomes from canine…"}]}, "fabrellas n": {"display": "Fabrellas N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}]}, "facey pd": {"display": "Facey PD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB82926", "pmid": "40431157", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic Supplementation Impacts Gut Microbiota Development in Infants at Risk of Atopy:…"}]}, "fackelmann g": {"display": "Fackelmann G", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA300541", "pmid": "42312244", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}]}, "fadeev e": {"display": "Fadeev E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB77875", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Seawater metagenomes collected during Jellyfish enrichment experiment"}, {"acc": "PRJEB85785", "pmid": "41437131", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Seawater Metagenomes from a Wastewater Exposure Experiment"}]}, "fadilah f": {"display": "Fadilah F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1077459", "pmid": "38883202", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Trio Whole Exome Sequencing of Rare Disease"}]}, "fadlallah j": {"display": "Fadlallah J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB7925", "pmid": "25887914", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Quality control of microbiota metagenomics by k-mer analysis with SOLiD sequencing techno…"}]}, "fadrosh dw": {"display": "Fadrosh DW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "fagerberg b": {"display": "Fagerberg B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "fahey gc": {"display": "Fahey GC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA49397", "pmid": "20962874", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Canine gastrointestinal metagenome"}]}, "fahsbender e": {"display": "Fahsbender E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA548968", "pmid": "31652508", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Fecal virome of wild and captive Cynomolgus macaques (Macaca fascicularis) in Thailand."}]}, "fahur bottino g": {"display": "Fahur Bottino G", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "42311381", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "fairley ck": {"display": "Fairley CK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "faith j": {"display": "Faith J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1121316", "pmid": "39747680", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}, {"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "faith jj": {"display": "Faith JJ", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA1121316", "pmid": "37060545", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}, {"acc": "PRJNA145005", "pmid": "22030749", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}, {"acc": "PRJNA39859", "pmid": "20368178", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Analyses of the human gut microbiome after transplantation into germ-free mice"}, {"acc": "PRJNA43253", "pmid": "20363958", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human fecal microbiome"}, {"acc": "PRJNA946744", "pmid": "39666007", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Homo sapiens metagenomic sequences"}, {"acc": "PRJNA975184", "pmid": "39474439", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "falchi m": {"display": "Falchi M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "faleck dm": {"display": "Faleck DM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA946744", "pmid": "39666007", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Homo sapiens metagenomic sequences"}]}, "fall t": {"display": "Fall T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "36151114", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "fallah mp": {"display": "Fallah MP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "falony g": {"display": "Falony G", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA693793", "pmid": "35320047", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BaBel Infant Gut Virome Raw Data"}, {"acc": "PRJNA804384", "pmid": "37052201", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Inflammatory bowel disease patients undergoing biological therapy"}]}, "falq g": {"display": "Falq G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273078", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Noma oral microbiome raw sequence reads"}]}, "falquet l": {"display": "Falquet L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55714", "pmid": "37397142", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analyses of the intestinal microbiome from neonates in the MIS BAIR trial"}, {"acc": "PRJEB55714", "pmid": "41853385", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analyses of the intestinal microbiome from neonates in the MIS BAIR trial"}]}, "famechon a": {"display": "Famechon A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59994", "pmid": "37892187", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evaluation of an Adapted Semi-Automated DNA Extraction for Human Salivary Shotgun Metagen…"}]}, "famo r": {"display": "Famo R", "group": false, "n_studies": 16, "studies": [{"acc": "PRJEB12669", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB24771", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB32135", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA287207", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA322188", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA339914", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA473126", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA524703", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA549787", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA557731", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA715615", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural infant gut microbiota"}]}, "fan b": {"display": "Fan B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA336061", "pmid": "28801639", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prevotella enterotype related metagenome sequencing"}]}, "fan c": {"display": "Fan C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "fan d": {"display": "Fan D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA311208", "pmid": "27406942", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Severe gut microbiota dysbiosis is associated with poor growth in patients with short bow…"}]}, "fan g": {"display": "Fan G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA477424", "pmid": "30619206", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "panda gut metagenome raw sequence reads Raw sequence reads"}]}, "fan h": {"display": "Fan H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1274127", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Fecal metagenome of Chinese Sturgeons (Acipenser sinensis) gut microbiota"}]}, "fan k": {"display": "Fan K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "fan l": {"display": "Fan L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA592843", "pmid": "32100127", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Therapeutic effects of the in vitro cultured human gut microbiota as transplants on alter…"}, {"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "fan s": {"display": "Fan S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1425751", "pmid": "41994268", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome"}]}, "fan w": {"display": "Fan W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA427478", "pmid": "30107526", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pomacea canaliculata isolate:SZHN2017 Genome sequencing and assembly"}]}, "fan x": {"display": "Fan X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1236379", "pmid": "40886152", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Infant BBB"}]}, "fan y": {"display": "Fan Y", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB15111", "pmid": "26932197", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB51635", "pmid": "36604748", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}, {"acc": "PRJEB51776", "pmid": "37069399", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}, {"acc": "PRJNA1184213", "pmid": "40765991", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The microbiota-dependent effect of physical activity on Crohn's disease"}, {"acc": "PRJNA812695", "pmid": "37714338", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Metagenome"}]}, "fanelli b": {"display": "Fanelli B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "fang b": {"display": "Fang B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA592843", "pmid": "32100127", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Therapeutic effects of the in vitro cultured human gut microbiota as transplants on alter…"}]}, "fang c": {"display": "Fang C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26795", "pmid": "30609941", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}]}, "fang h": {"display": "Fang H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA427267", "pmid": "29235710", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pearl River metagenomics Raw sequence reads"}]}, "fang l": {"display": "Fang L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1156595", "pmid": "39827146", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics: a new frontier for routine pathology testing of gastrointestinal pathogens"}, {"acc": "PRJNA1200893", "pmid": "41809988", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}]}, "fang s": {"display": "Fang S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA818432", "pmid": "35783441", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Raw sequence reads"}]}, "fang sg": {"display": "Fang SG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA539906", "pmid": "31708889", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Chinese alligator gut metagenome"}]}, "fang x": {"display": "Fang X", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}, {"acc": "PRJEB73551", "pmid": "38912204", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "PICU cases"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "fang y": {"display": "Fang Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA784757", "pmid": "35902819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "The Diagnosis Performance of Mycobacterium Tuberculosis Complex by Metagenomic Next-gener…"}]}, "fanos v": {"display": "Fanos V", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA273761", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}]}, "fante ma": {"display": "Fante MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "fantin b": {"display": "Fantin B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}, {"acc": "PRJEB35816", "pmid": "32585945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota of carriers of extended-spectrum beta-lactamase or carbapenemase-producing…"}]}, "fantoni g": {"display": "Fantoni G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "farbos a": {"display": "Farbos A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA213036", "pmid": "24072871", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Cronobacter sakazakii NCIMB 8272 Genome sequencing and assembly"}]}, "farin w": {"display": "Farin W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36461", "pmid": "32360114", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Laparoscopic Roux-en-Y gastric bypass and sleeve gastrectomy on gut microbiota:…"}]}, "farina r": {"display": "Farina R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976261", "pmid": "31153098", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole metagenomic shotgun sequencing of the subgingival microbiome of diabetics and non-d…"}, {"acc": "PRJNA976261", "pmid": "37257865", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole metagenomic shotgun sequencing of the subgingival microbiome of diabetics and non-d…"}]}, "farkas k": {"display": "Farkas K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1235110", "pmid": "39798461", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome"}]}, "farkas r": {"display": "Farkas R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685398", "pmid": "36083885", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Honey bee gut microbiome"}]}, "farley e": {"display": "Farley E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273078", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Noma oral microbiome raw sequence reads"}]}, "farrant o": {"display": "Farrant O", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "farrer ag": {"display": "Farrer AG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA688065", "pmid": "33811235", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effectiveness of decontamination protocols when analyzing ancient DNA preserved in dental…"}]}, "fasano a": {"display": "Fasano A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "fatima f": {"display": "Fatima F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}, {"acc": "PRJEB59861", "pmid": "31678062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "fauchere f": {"display": "Fauchère F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "faust k": {"display": "Faust K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA693793", "pmid": "35320047", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BaBel Infant Gut Virome Raw Data"}]}, "faustino al": {"display": "Faustino AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA60545", "pmid": "24706600", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes isolated from NE Brazil"}]}, "fauvelot c": {"display": "Fauvelot C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "favale n": {"display": "Favale N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976261", "pmid": "37257865", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole metagenomic shotgun sequencing of the subgingival microbiome of diabetics and non-d…"}]}, "fayad le": {"display": "Fayad LE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "fayemi oe": {"display": "Fayemi OE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73590", "pmid": "38003822", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}]}, "fazaeli f": {"display": "Fazaeli F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1140720", "pmid": "41565819", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Modelling human microbiome transmission in a nursery setting"}]}, "feasey n": {"display": "Feasey N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63570", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Klebsiella_transmission_and_immunity_on_Chatinkha_nursery__Neo_TRACK_"}]}, "feasey na": {"display": "Feasey NA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63570", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Klebsiella_transmission_and_immunity_on_Chatinkha_nursery__Neo_TRACK_"}]}, "federman s": {"display": "Federman S", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1188190", "pmid": "37113001", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two…"}, {"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}, {"acc": "PRJNA644725", "pmid": "32958861", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA916952", "pmid": "36758519", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Stanford's Outcomes Research in Kids (STORK) Virome"}]}, "fedi s": {"display": "Fedi S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}]}, "feehily c": {"display": "Feehily C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB48251", "pmid": "37230981", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJEB48251", "pmid": "39365058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJEB48251", "pmid": "40755225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJNA422569", "pmid": "30126456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}]}, "feemster ka": {"display": "Feemster KA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "feher m": {"display": "Feher M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1004259", "pmid": "38047654", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic and Amplicon-based Nanopore Sequencing of French Human Monkeypox direct from…"}]}, "fehlner-peach h": {"display": "Fehlner-Peach H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "felchle h": {"display": "Felchle H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "feldmann h": {"display": "Feldmann H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "felicianna": {"display": "Felicianna", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1151597", "pmid": "40405038", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Probiotics mixture suppresses MASLD-associated hepatocellular carcinoma"}, {"acc": "PRJNA1229795", "pmid": "40691217", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Theabrownin, in combination with Zearalenone, suppressed colitis-associated colorectal ca…"}, {"acc": "PRJNA1366117", "pmid": "39489290", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The Role of Amino Acid-Derived Metabolites in Non-alcoholic fatty liver disease (NAFLD) D…"}, {"acc": "PRJNA1366117", "pmid": "40015656", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The Role of Amino Acid-Derived Metabolites in Non-alcoholic fatty liver disease (NAFLD) D…"}, {"acc": "PRJNA1367284", "pmid": "38575146", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Probiotics mixture suppresses diet-induced MASLD: Fecal metagenomics of mice sample"}]}, "felis ge": {"display": "Felis GE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746509", "pmid": "34946200", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota in an infant with propionic acidemia before and after probiotic supplement…"}]}, "felix c": {"display": "Felix C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "felix dh": {"display": "Felix DH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA901256", "pmid": "12117207", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Acrossocheilus fasciatus Raw sequence reads"}]}, "fellahi s": {"display": "Fellahi S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "fellner a": {"display": "Fellner A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "fellows yates ja": {"display": "Fellows Yates JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445215", "pmid": "29959351", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "feng c": {"display": "Feng C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1070846", "pmid": "38647334", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal metagenomic sequecing"}, {"acc": "PRJNA1143669", "pmid": "39707483", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of neonates exposed to HIV"}]}, "feng j": {"display": "Feng J", "group": false, "n_studies": 17, "studies": [{"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "feng l": {"display": "Feng L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1231247", "pmid": "42746483", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "metagenome Raw sequence reads"}, {"acc": "PRJNA433058", "pmid": "37854337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "feng q": {"display": "Feng Q", "group": false, "n_studies": 19, "studies": [{"acc": "PRJEB15111", "pmid": "26932197", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJEB6456", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA273761", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA384716", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA473126", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA63661", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "feng s": {"display": "Feng S", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1238458", "pmid": "42654723", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Raw data of 16S rRNA sequencing of preterm infants' feces (NEC study)"}, {"acc": "PRJNA841246", "pmid": "35765950", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Feline panleukopenia and healthy control feline faecal samples"}, {"acc": "PRJNA847006", "pmid": "37280255", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA847017", "pmid": "37280255", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads of GF mice"}]}, "feng t": {"display": "Feng T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA973819", "pmid": "38188910", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Pathogenetic characterization of a Micrococcus luteus strain isolated from an infant"}]}, "feng y": {"display": "Feng Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715658", "pmid": "40266232", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Genome-resolved metagenomics of the chicken gut microbiome"}, {"acc": "PRJNA735411", "pmid": "40266232", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Microbial Ecology of sea lion gut microbiome at Comau Fjord, Northern Patagonia (42 S). R…"}]}, "feng z": {"display": "Feng Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1238458", "pmid": "42654723", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Raw data of 16S rRNA sequencing of preterm infants' feces (NEC study)"}]}, "fennell m": {"display": "Fennell M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "feret w": {"display": "Feret W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "ferguson jm": {"display": "Ferguson JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "fernandes c": {"display": "Fernandes C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "fernandes pm": {"display": "Fernandes PM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1233203", "pmid": null, "pos": "first", "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Microbiome of recirculating aquaculture systems under different particle loads (MikroRAS)"}]}, "fernandez jr": {"display": "Fernandez JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1187541", "pmid": "39753133", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Raw metagenomics sequencing from human hippocampi."}]}, "fernandez-cabezas j": {"display": "Fernández-Cabezas J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "fernandez-diaz cm": {"display": "Fernández-Díaz CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "fernandez-orth d": {"display": "Fernández-Orth D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA590575", "pmid": "32317653", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Bacteriophages in human samples"}]}, "fernandez-pato a": {"display": "Fernández-Pato A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "ferrando-martinez s": {"display": "Ferrando-Martínez S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB5185", "pmid": "25407519", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysfunctional gut microbiota drives chronic immune activation in HIV-treated individuals"}]}, "ferrario c": {"display": "Ferrario C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA287207", "pmid": "26231653", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}]}, "ferreira atrn": {"display": "Ferreira ATRN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA717815", "pmid": "35758687", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human salivary metagenome in health and disease"}]}, "ferreira c": {"display": "Ferreira C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "ferreira cko": {"display": "Ferreira CKO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA894691", "pmid": "37082122", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Maternal exposure to air pollution changes gut microbiota in mice"}]}, "ferreira l": {"display": "Ferreira L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "ferreira r": {"display": "Ferreira R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "35750157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "36131032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "ferreira ss": {"display": "Ferreira SS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA847605", "pmid": "36565815", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosa…"}]}, "ferreiro al": {"display": "Ferreiro AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1067813", "pmid": "39731916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C. difficile-associated mouse and human fecal metagenomes"}]}, "ferren m": {"display": "Ferren M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29970463", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "ferrer m": {"display": "Ferrer M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB3085", "pmid": "23236009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}, {"acc": "PRJNA158313", "pmid": "23251564", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Iberian lynx fecal Metagenome"}]}, "ferrer r": {"display": "Ferrer R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "ferrere g": {"display": "Ferrere G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "ferrero g": {"display": "Ferrero G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "ferrero l": {"display": "Ferrero L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44108", "pmid": "37065965", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A bone of contention"}]}, "ferretti p": {"display": "Ferretti P", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA1019702", "pmid": "41274878", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1198101", "pmid": "41274878", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic re-sequencing of human milk"}, {"acc": "PRJNA287207", "pmid": "26231653", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA339914", "pmid": "28144631", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}]}, "ferrieri p": {"display": "Ferrieri P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1458854", "pmid": "42370707", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Validation of an Integrated Metagenomic Pipeline Combining Optimized Wet Lab Processing a…"}]}, "ferris mj": {"display": "Ferris MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46337", "pmid": "28274256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}]}, "ferrocino i": {"display": "Ferrocino I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA636619", "pmid": "34053518", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome (DNAseq) of italian fermented sausages"}]}, "ferrus ml": {"display": "Ferrús ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB5185", "pmid": "25407519", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysfunctional gut microbiota drives chronic immune activation in HIV-treated individuals"}]}, "feugier n": {"display": "Feugier N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "feugier-favier n": {"display": "Feugier-Favier N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48663", "pmid": "35311446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Increasing the diversity of dietary fibres in a daily-consumed bread modifies gut microbi…"}]}, "fezeu l": {"display": "Fezeu L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}]}, "fidelle m": {"display": "Fidelle M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}, {"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "fiehn o": {"display": "Fiehn O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "field n": {"display": "Field N", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "31534227", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA400115", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}, {"acc": "PRJNA806984", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}, {"acc": "PRJNA994433", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Variability of Bifidobacterium Species in the Infant Gut is Independent of M…"}]}, "fields cj": {"display": "Fields CJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA646650", "pmid": "33658330", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "In vivo competitions between Fibrobacter succinogenes, Ruminococcus flavefaciens and Rumi…"}, {"acc": "PRJNA778397", "pmid": "39858934", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal Metagenome Sequences of STRONG Kids 2 Birth Cohort Study"}]}, "fields da": {"display": "Fields DA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1019702", "pmid": "39043677", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "39265573", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1198101", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic re-sequencing of human milk"}]}, "fierer n": {"display": "Fierer N", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB20471", "pmid": "20231444", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Forensic identification using skin bacterial communities - keyboard"}, {"acc": "PRJEB20500", "pmid": "20231444", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Forensic identification using skin bacterial communities - mouse"}]}, "fierrez j": {"display": "Fierrez J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "fifer wp": {"display": "Fifer WP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "42311381", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "figg wd": {"display": "Figg WD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA604820", "pmid": "34936382", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin metagenome from antibiotics treated healthy human subjects"}]}, "figlerowicz m": {"display": "Figlerowicz M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA749919", "pmid": "35589762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An optimized approach to the metagenomic population studies: from sample donation to comm…"}]}, "fiksdal lwf": {"display": "Fiksdal LWF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1233203", "pmid": null, "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Microbiome of recirculating aquaculture systems under different particle loads (MikroRAS)"}]}, "filio y": {"display": "Filio Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA802048", "pmid": "37882571", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Insights into the infant gut microbiome composition after bovine lactoferrin oral adminis…"}]}, "filipe p": {"display": "Filipe P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "filosi m": {"display": "Filosi M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "findley k": {"display": "Findley K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46333", "pmid": "23698366", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "finkelstein jl": {"display": "Finkelstein JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1445932", "pmid": "42669658", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of a complementary feeding intervention on the gut microbiota in 12-18-month- old…"}]}, "finlay bb": {"display": "Finlay BB", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "37644001", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "40623174", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "finn pw": {"display": "Finn PW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28510", "pmid": "27633952", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diverse virome in kidney transplant patients contains multiple viral subtypes with dist…"}]}, "finn rd": {"display": "Finn RD", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB22200", "pmid": "31957879", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenomic Analysis of Microbial Composition of Kombucha"}, {"acc": "PRJNA46333", "pmid": "37054678", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "fiore-gartland a": {"display": "Fiore-Gartland A", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB6456", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA475246", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA486782", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA510445", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA630999", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}]}, "fire a": {"display": "Fire A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA605028", "pmid": "32690954", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Genome sequencing and assembly"}]}, "firek a": {"display": "Firek A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1111475", "pmid": "39813050", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics in patients with central centrifugal cicatricial alopecia (CCCA)"}]}, "firek b": {"display": "Firek B", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB21259", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}, {"acc": "PRJNA273761", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA327106", "pmid": "28073918", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}]}, "firek ba": {"display": "Firek BA", "group": false, "n_studies": 10, "studies": [{"acc": "PRJNA221723", "pmid": "24468033", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "29180750", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "29180750", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA376566", "pmid": "29180750", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "29925423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376580", "pmid": "29180750", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hospital (NICU) surfaces and sinks"}, {"acc": "PRJNA376580", "pmid": "30770768", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hospital (NICU) surfaces and sinks"}, {"acc": "PRJNA396794", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA417343", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y5 Cohort)"}, {"acc": "PRJNA60717", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analysis of infant stool sample"}, {"acc": "PRJNA698986", "pmid": "34622230", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA698986", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA717139", "pmid": "34154658", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitaliz…"}]}, "firrman j": {"display": "Firrman J", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1160256", "pmid": "39919360", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": "40941064", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1177813", "pmid": "39796584", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "2FL age specific bifidobacterium effect"}, {"acc": "PRJNA1456031", "pmid": "42353547", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of selected contaminants on the human gut microbiome tested ex vivo"}, {"acc": "PRJNA1477482", "pmid": null, "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbial communities developed in vitro compared to the source inoculums"}, {"acc": "PRJNA893635", "pmid": "36361763", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}]}, "firrman ja": {"display": "Firrman JA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA893635", "pmid": "37297350", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}, {"acc": "PRJNA961974", "pmid": "38236043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The effects of selected plant extracts on the human gut microbiome"}]}, "firsanov d": {"display": "Firsanov D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "fischbach ma": {"display": "Fischbach MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "fischer jc": {"display": "Fischer JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "fischer ww": {"display": "Fischer WW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA348149", "pmid": "28360330", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome"}]}, "fish j": {"display": "Fish J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748448", "pmid": "34523979", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic WGS of Preterm Infant Skin and Stool"}]}, "fishbein a": {"display": "Fishbein A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA695570", "pmid": "34444993", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "fishbein srs": {"display": "Fishbein SRS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1067813", "pmid": "39731916", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C. difficile-associated mouse and human fecal metagenomes"}]}, "fisher el": {"display": "Fisher EL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA483343", "pmid": "30305736", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "fisher gw": {"display": "Fisher GW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1187541", "pmid": "39753133", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Raw metagenomics sequencing from human hippocampi."}]}, "fisher-hoch sp": {"display": "Fisher-Hoch SP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA734860", "pmid": "32258950", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA734860", "pmid": "34633706", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA734860", "pmid": "35477306", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}]}, "fitzgerald dw": {"display": "Fitzgerald DW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445968", "pmid": "28883399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA445968", "pmid": "30282828", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}]}, "fitzgerald pc": {"display": "FitzGerald PC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "fitzgibbon mp": {"display": "Fitzgibbon MP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28287142", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28711653", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "fitzpatrick l": {"display": "Fitzpatrick L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "fitzstevens jl": {"display": "Fitzstevens JL", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46788", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB86954", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Integrating Metagenomics for Helminth Detection"}, {"acc": "PRJNA48479", "pmid": "41358671", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "fjaere e": {"display": "Fjære E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64334", "pmid": "38294254", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Multi-omics of host-gut microbiota interactions in healthy and parasitized farmed Atlanti…"}]}, "flament c": {"display": "Flament C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "flannery rl": {"display": "Flannery RL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633576", "pmid": "33479326", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}]}, "fleck js": {"display": "Fleck JS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}]}, "fleisch af": {"display": "Fleisch AF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1139690", "pmid": "40340756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "HOME Study fecal samples"}]}, "fleming e": {"display": "Fleming E", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1040852", "pmid": "37350224", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CHAN skin Metagenome"}, {"acc": "PRJNA558989", "pmid": "32004459", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomics of Staphylococcus epidermidis and contextual metagenome"}, {"acc": "PRJNA595966", "pmid": "30442907", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C57BL6_NSG_humanFMT"}]}, "flemming i": {"display": "Flemming I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14474", "pmid": "28539477", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}]}, "fleshner p": {"display": "Fleshner P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB7772", "pmid": "25619688", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}]}, "fleury v": {"display": "Fleury V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39870", "pmid": "33646178", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Oral microbial community profiles in Parkinson’s disease"}]}, "flinck a": {"display": "Flinck A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "flores ge": {"display": "Flores GE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB5224", "pmid": "38182754", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}]}, "flores i": {"display": "Flores I", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "flowers cr": {"display": "Flowers CR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "fluckiger a": {"display": "Fluckiger A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "flux al": {"display": "Flux AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41353", "pmid": "33997698", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Mass burial genomics reveals outbreak of enteric paratyphoid fever in the Late Medieval t…"}]}, "foata f": {"display": "Foata F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42539", "pmid": "34756056", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "FUT2/FUT3 genes sequences and nasopharyngeal shotgun metagenomics from the Microbiota and…"}]}, "fodelianakis s": {"display": "Fodelianakis S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA781406", "pmid": "35444202", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Vanishing Glaciers Project"}]}, "fodor aa": {"display": "Fodor AA", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA349463", "pmid": "28915922", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Urban vs. Rural China Microbiome"}, {"acc": "PRJNA787952", "pmid": "35239511", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA876771", "pmid": "36975801", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Vaginal microbiome metagenome inference accuracy: differential measurement error accordin…"}]}, "fogarty e": {"display": "Fogarty E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701961", "pmid": "37069665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA701961", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "fogler k": {"display": "Fogler K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA506850", "pmid": null, "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "USDA Developing Computational Tools To Identify Critical Control Points For Mitigating Th…"}]}, "folarin oa": {"display": "Folarin OA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "fong s": {"display": "Fong S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB10057", "pmid": "26180832", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Variation in the Microbiota of Ixodes ticks with geography, species and sex"}, {"acc": "PRJEB10073", "pmid": "26180832", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Variation in the Microbiota of Ixodes ticks with geography, species and sex illumina"}]}, "fong w": {"display": "Fong W", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}, {"acc": "PRJNA595393", "pmid": "32108565", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Optimisation of sample preparation for culture-independent sequencing of Bordetella pertu…"}, {"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "fontaine s": {"display": "Fontaine S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA752888", "pmid": "39509330", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Longitudinal saliva bacteriome and early childhood caries"}]}, "fontana e": {"display": "Fontana E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}, {"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "fontana f": {"display": "Fontana F", "group": false, "n_studies": 212, "studies": [{"acc": "PRJDB4176", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB10878", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB11419", "pmid": "33005310", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJEB1220", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB1220", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "34152069", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36123315", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB14935", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Term and preterm shotgun samples"}, {"acc": "PRJEB15257", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB15371", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB15633", "pmid": "33005310", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJEB17784", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The fecal microbiota in L-DOPA naive PD patients"}, {"acc": "PRJEB1786", "pmid": "36123315", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB18755", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Connections between the gut microbiome and gestational diabetes mellitus"}, {"acc": "PRJEB21528", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB23662", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A novel affordable reagent for room temperature storage and transport of fecal samples fo…"}, {"acc": "PRJEB24006", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24557", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Alterations of the intestinal microbiome in patients with retinal artery occlusion"}, {"acc": "PRJEB24771", "pmid": "34152069", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36123315", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB25514", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A cross-sectional study of compositional and functional profiles of gut microbiota in Sar…"}, {"acc": "PRJEB26795", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB27005", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27005", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27928", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB28338", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Influence of travel on the gut microbiome of cricketers"}, {"acc": "PRJEB28687", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "U.S. immigration westernizes the human gut microbiome"}, {"acc": "PRJEB29052", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29052", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29127", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB29127", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB30834", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30834", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30924", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Comparative analysis of amplicon and metagenomic sequencing methods reveals key features…"}, {"acc": "PRJEB32135", "pmid": "34152069", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36123315", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32794", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Distinct microbiome composition and metabolome exists across subgroups of elite Irish ath…"}, {"acc": "PRJEB33013", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB33098", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB33098", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB35615", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Associations between the intestinal microbiome and the complement system in age-related m…"}, {"acc": "PRJEB36820", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB38528", "pmid": "38441032", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB39610", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39610", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39813", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenomic study of the oral (saliva) and Gut (stool) microbiome in subjects with Croh…"}, {"acc": "PRJEB41102", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB41463", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB42363", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB44737", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB46788", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB6070", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6070", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6092", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "metagenome fecal microbiota, Ilumina seq reads of 12 individuals at 2 timepoints"}, {"acc": "PRJEB6456", "pmid": "34152069", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36123315", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB7774", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB7774", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB8347", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJEB9150", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbial succession follows acute secretory diarrhea in humans"}, {"acc": "PRJEB9576", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA1046438", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA188481", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA215106", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA221723", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA231909", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA268964", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "36123315", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA275349", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA278393", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA287207", "pmid": "34152069", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36123315", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA289586", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA290380", "pmid": "34152069", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36123315", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA299502", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA301903", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA305507", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA307231", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA317435", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "ImMicroDyn"}, {"acc": "PRJNA319574", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA320015", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Technical validation of ethanol fixation on stool canine and infant metagenomes"}, {"acc": "PRJNA321218", "pmid": "36123315", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA321218", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA322188", "pmid": "34152069", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36123315", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA324129", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human fecal microbiome before and after consumption of AH1206 - Raw sequence reads"}, {"acc": "PRJNA324672", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA327106", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA331138", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of Italian metagenome"}, {"acc": "PRJNA336518", "pmid": "36123315", "pos": "first", "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA339012", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics analysis of donor and recepient samples from fecal transplant for Recurrent…"}, {"acc": "PRJNA339914", "pmid": "34152069", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA340216", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota and metagenomic diversity of omnivore, vegetarian and vegan healthy subjec…"}, {"acc": "PRJNA345144", "pmid": "34152069", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36123315", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "34152069", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36123315", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA360177", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA360177", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA362284", "pmid": "36123315", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA371647", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Raw sequence reads"}, {"acc": "PRJNA373879", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Healthy human fecal metagenomes variably reactivate Irinotecan active metabolite"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379741", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "MECFS metagenomics"}, {"acc": "PRJNA380118", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA382011", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics-Guided Pathogen Discovery in Travelers' Diarrhea"}, {"acc": "PRJNA384716", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA386422", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA386422", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA389927", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Viral and Bacterial Communities of Colorectal Cancer"}, {"acc": "PRJNA390646", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA392180", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA396794", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA397219", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA400072", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA400072", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA401385", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA401385", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA412411", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA413160", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenome data from infant stools samples raw sequence reads"}, {"acc": "PRJNA413162", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenome data from infant (PD and ProD) stools samples raw sequence reads"}, {"acc": "PRJNA414479", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Total lipopolysaccharide from the human gut microbiome silences toll-like receptor signal…"}, {"acc": "PRJNA417343", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y5 Cohort)"}, {"acc": "PRJNA418941", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota functionality of healthy controls and individuals with kidney stones"}, {"acc": "PRJNA421881", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA422434", "pmid": "36123315", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422569", "pmid": "36123315", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA428202", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "healthy human gut metagenomics"}, {"acc": "PRJNA431482", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA431482", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA433459", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "gut metagenome Metagenome"}, {"acc": "PRJNA436562", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA438847", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA438847", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA445968", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA449784", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA449784", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA472785", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Gut Microbiome Metagenomic Sequencing"}, {"acc": "PRJNA473126", "pmid": "34152069", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36123315", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "34152069", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36123315", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA482729", "pmid": "36123315", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of native and acetylated high amylose maize starch on fecal pH, short chain fatty…"}, {"acc": "PRJNA485056", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA486782", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486795", "pmid": "36123315", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Modification of gut microbiota-bile acid-intestinal FXR signaling leads to the clinical b…"}, {"acc": "PRJNA487305", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Effects of non-nutritive sweeteners on the composition of the human gut microbiome"}, {"acc": "PRJNA489090", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489693", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA492716", "pmid": "36123315", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA497734", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA499081", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}, {"acc": "PRJNA503909", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA503909", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA509512", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiota changes are associated with acquisition of antibiotic resistant genes among in…"}, {"acc": "PRJNA518912", "pmid": "36123315", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA521587", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521587", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521878", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "34152069", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36123315", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA527208", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA527208", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA529124", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529230", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "n of 1 study: Fecal Microbiota Transplantation in Multiple Sclerosis"}, {"acc": "PRJNA531203", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531203", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA532310", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut metagenome"}, {"acc": "PRJNA532538", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome of the gut microbiota in multiple system atrophy patients"}, {"acc": "PRJNA542703", "pmid": "36123315", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA544527", "pmid": "36123315", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA547591", "pmid": "36177457", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547591", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547717", "pmid": "36123315", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "human oral metagenome Raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "34152069", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36123315", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA553191", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA553191", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA555020", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA557731", "pmid": "34152069", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36123315", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA562600", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Multi-omic analysis of Clostridioides difficile infection and response to therapy in pedi…"}, {"acc": "PRJNA562766", "pmid": "36123315", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA588513", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA588513", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA589622", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Underfeeding and oral vancomycin perturb the human gut microbiome and impair nutrient abs…"}, {"acc": "PRJNA597839", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota, visceral fat and sleeve gastrectomy"}, {"acc": "PRJNA613834", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Functional Microbial Responses to Alcohol Abstinence in Patients with Alcohol Use Disorder"}, {"acc": "PRJNA615162", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615842", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}, {"acc": "PRJNA624223", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624223", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624763", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA624763", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA626004", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics Fecal Microbiome Dysbiosis in Parkinsons Disease"}, {"acc": "PRJNA628604", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}, {"acc": "PRJNA629392", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}, {"acc": "PRJNA630999", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA633576", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA634145", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA63661", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA637175", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}, {"acc": "PRJNA637878", "pmid": "36123315", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA637878", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA644725", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA644725", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA648487", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA648487", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA649316", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Hi-C and metagenomic sequencing of neutropenic patient microbiomes"}, {"acc": "PRJNA658422", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "gut microbiome shifts associated with Henoch-Schonlein purpura"}, {"acc": "PRJNA663646", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "External validation cohorts for CRC-SNP analysis"}, {"acc": "PRJNA664544", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut microbes Metagenome"}, {"acc": "PRJNA665061", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665854", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS of feces and saliva of pancreatic cancer patients"}, {"acc": "PRJNA678426", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes."}, {"acc": "PRJNA678454", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of stool samples from two South African cohorts"}, {"acc": "PRJNA679346", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA679346", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA685797", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The Influence of the gut microbiome on BCG-induced trained immunity"}, {"acc": "PRJNA686265", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-mediated metabolism effects on immunity in rural and urban African populat…"}, {"acc": "PRJNA687536", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA687536", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA688164", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688164", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688274", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA688881", "pmid": "36177457", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Metagenome-wide association study of gut microbiome revealed potential etiology of Pediat…"}, {"acc": "PRJNA692830", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole genome metagenomic analysis of the gut microbiome in HIV-1 infected individuals on…"}, {"acc": "PRJNA695570", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA698773", "pmid": "33973321", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA698986", "pmid": "36123315", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA705895", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA714678", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA714678", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA715615", "pmid": "34152069", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Rural infant gut microbiota"}, {"acc": "PRJNA730640", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}, {"acc": "PRJNA742740", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiota of Kidney Stone patients and live-in partners"}, {"acc": "PRJNA750475", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Longitudinal Analysis of Gut Microbiome among healthy women"}, {"acc": "PRJNA752006", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing to Examine the Gut Microbiome in Konzo"}, {"acc": "PRJNA762543", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA763503", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Character of microbial engraftment following the fecal microbiota transplantation in pati…"}, {"acc": "PRJNA772518", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA772518", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA782810", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Exploring the species-level infant gut bacterial biodiversity through a meta-analysis and…"}, {"acc": "PRJNA845806", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Trial of Diet in Gestational Diabetes Mellitus: Metabolic Consequences to Mother and Offs…"}, {"acc": "PRJNA975734", "pmid": "37728335", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Disentangling the interactions between nasopharyngeal and gut microbiome and their involv…"}]}, "fontana y": {"display": "Fontana Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "fontes anb": {"display": "Fontes ANB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "foo a": {"display": "Foo A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1211045", "pmid": "40833797", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Freshwater snail faeces raw sequence reads"}]}, "forano e": {"display": "Forano E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA646650", "pmid": "33658330", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "In vivo competitions between Fibrobacter succinogenes, Ruminococcus flavefaciens and Rumi…"}]}, "forberg k": {"display": "Forberg K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}, {"acc": "PRJNA789273", "pmid": "34960803", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Emergence of a Distinct Picobirnavirus Genotype Circulating in Patients Hospitalized with…"}]}, "forbrigger z": {"display": "Forbrigger Z", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB29237", "pmid": "35967843", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}, {"acc": "PRJEB41463", "pmid": "35967843", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}]}, "forchielli ml": {"display": "Forchielli ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA914532", "pmid": "36639555", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "Levofloxacin prophylaxis and parenteral nutrition have a detrimental effect on intestinal…"}]}, "ford e": {"display": "Ford E", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1042647", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1106565", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "forde bm": {"display": "Forde BM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893826", "pmid": "38622998", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Culture-independent long read metagenomic diagnostics for genomic surveillance and infect…"}]}, "forest tt": {"display": "Forest TT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "42311381", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "forestier s": {"display": "Forestier S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1040852", "pmid": "37350224", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CHAN skin Metagenome"}]}, "formenti s": {"display": "Formenti S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "fornaciari g": {"display": "Fornaciari G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352376", "pmid": "28072390", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}]}, "forsberg c": {"display": "Forsberg C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA860728", "pmid": "36121157", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "GenCap-Seq Selectively Enriches Bacterial DNA and Enables Genome-wide Measurement of Intr…"}]}, "forsberg k": {"display": "Forsberg K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}]}, "forsberg kj": {"display": "Forsberg KJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA215106", "pmid": "24236055", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}]}, "forslund k": {"display": "Forslund K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB11685", "pmid": "26811868", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children"}, {"acc": "PRJEB76677", "pmid": "28039159", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota differs between children with Inflammatory Bowel Disease and healthy sibli…"}]}, "forslund sk": {"display": "Forslund SK", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB20308", "pmid": "29669589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Similarity of the dog and human gut microbiomes in gene content and response to diet"}, {"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB51635", "pmid": "36604748", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}, {"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA698459", "pmid": "33785752", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}, {"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "forslund-startceva sk": {"display": "Forslund-Startceva SK", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB15633", "pmid": "42618579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJNA1262354", "pmid": "41603547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMBARK - Establishing a Monitoring Baseline for Antimicrobial Resistance in Key environme…"}, {"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}, {"acc": "PRJNA284162", "pmid": "42618579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "STL Infant Twins Microbiome"}, {"acc": "PRJNA301903", "pmid": "42618579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA379120", "pmid": "42618579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA497734", "pmid": "42618579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "forster sc": {"display": "Forster SC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB32631", "pmid": "31534227", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}]}, "forstner ku": {"display": "Förstner KU", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15376", "pmid": "29067007", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome, metatranscriptome and exo-proteome analyses identify molecular keys and main…"}]}, "forsyth ra": {"display": "Forsyth RA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA255985", "pmid": "25279840", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human saliva, creek water, and synthetic metagenomic samples used in selective DNA isolat…"}]}, "forsythe s": {"display": "Forsythe S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA213036", "pmid": "24072871", "pos": "last", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Cronobacter sakazakii NCIMB 8272 Genome sequencing and assembly"}]}, "fortin n": {"display": "Fortin N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629517", "pmid": "34145447", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "DFO - beads in situ microcosms Raw sequence reads"}]}, "fortmann i": {"display": "Fortmann I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "foster m": {"display": "Foster M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}]}, "fougeroux c": {"display": "Fougeroux C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB7925", "pmid": "25887914", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Quality control of microbiota metagenomics by k-mer analysis with SOLiD sequencing techno…"}]}, "foulex a": {"display": "Foulex A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21816", "pmid": "30991963", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Listeria monocytogenes abdominal periaortitis"}]}, "fouque d": {"display": "Fouque D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "fouquet g": {"display": "Fouquet G", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB41353", "pmid": "33997698", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Mass burial genomics reveals outbreak of enteric paratyphoid fever in the Late Medieval t…"}, {"acc": "PRJNA1104421", "pmid": "39078043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Serum Bile Acids profiles are altered without change of the Gut Microbiota composition fo…"}, {"acc": "PRJNA1111312", "pmid": "39895875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun metagenomics reveals Bacteroides stercoris as a fecal biomarker depleted in late-…"}]}, "fournier b": {"display": "Fournier B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB25144", "pmid": "25874666", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Temporal patterns of soil micro-eukaryotic diversity beneath decomposing pig cadavers as…"}]}, "fournier c": {"display": "Fournier C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB20308", "pmid": "29669589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Similarity of the dog and human gut microbiomes in gene content and response to diet"}]}, "fournier e": {"display": "Fournier E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52431", "pmid": "36971547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In Vitro Modelling of Oral Microbial Invasion in the Human Colon"}]}, "fournier pe": {"display": "Fournier PE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "fowler s": {"display": "Fowler S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "fowler wj": {"display": "Fowler WJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "fox an": {"display": "Fox AN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB57859", "pmid": "36612923", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Analysis of Microbial Contamination in the U.S. Portion of the Tijuana River…"}]}, "fox lm": {"display": "Fox LM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "fox-robichaud a": {"display": "Fox-Robichaud A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA674643", "pmid": "35474894", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Validation of Coronavirus and Sepsis Probe Sets designed using HUBDesign"}]}, "frada mj": {"display": "Frada MJ", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "fragiadakis gk": {"display": "Fragiadakis GK", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB49206", "pmid": "30118385", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}, {"acc": "PRJEB49206", "pmid": "30439937", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}, {"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "francalanci p": {"display": "Francalanci P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1013917", "pmid": "37965266", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Gut microbiota of an immunocompromised child with chronic cryptosporidiosis"}]}, "francavilla a": {"display": "Francavilla A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "francavilla r": {"display": "Francavilla R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "france m": {"display": "France M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA774819", "pmid": "35695455", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Highly specialized carbohydrate metabolism capability in Bifidobacterium strain associate…"}]}, "franceschi c": {"display": "Franceschi C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA877820", "pmid": "32209716", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "francino mp": {"display": "Francino MP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991269", "pmid": "38589361", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "francino o": {"display": "Francino O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42270", "pmid": "33957869", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Long-read metagenomics to retrieve high-quality metagenome-assembled genomes from canine…"}]}, "franciosa i": {"display": "Franciosa I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA636619", "pmid": "34053518", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome (DNAseq) of italian fermented sausages"}]}, "francis f": {"display": "Francis F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB51728", "pmid": "39341154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "francisco tm": {"display": "Francisco TM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA847605", "pmid": "36565815", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosa…"}]}, "franco-paredes c": {"display": "Franco-Paredes C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "francuzik w": {"display": "Francuzik W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "frank dn": {"display": "Frank DN", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA845806", "pmid": "35966074", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Trial of Diet in Gestational Diabetes Mellitus: Metabolic Consequences to Mother and Offs…"}, {"acc": "PRJNA884688", "pmid": "36778973", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiota and protein source"}]}, "frank jm": {"display": "Frank JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821920", "pmid": "41782637", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mental Health Screening for Babies. What can we learn from infant and caregiver behaviors…"}]}, "frank km": {"display": "Frank KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445389", "pmid": "30586509", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Sphingomonas koreensis Genome sequencing and assembly"}]}, "franke a": {"display": "Franke A", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB41353", "pmid": "33997698", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Mass burial genomics reveals outbreak of enteric paratyphoid fever in the Late Medieval t…"}, {"acc": "PRJEB42185", "pmid": "34192537", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}, {"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "franke kr": {"display": "Franke KR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542703", "pmid": "35310842", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}]}, "franklin p": {"display": "Franklin P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28369502", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "fransson e": {"display": "Fransson E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37731", "pmid": "33208514", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "33816334", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "35553675", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "39015337", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "39160615", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB62678", "pmid": "31641004", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "BASIC: Biology, Affect, Stress, Imaging and Cognition in pregnancy"}]}, "franz e": {"display": "Franz E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44119", "pmid": "35659906", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut colonisation by extended-spectrum β-lactamase-producing Escherichia coli and its asso…"}]}, "franzenburg s": {"display": "Franzenburg S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}]}, "franzosa ea": {"display": "Franzosa EA", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA275349", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA398089", "pmid": "35614211", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA48479", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA610982", "pmid": "33308267", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Determinants of S. aureus carriage in the developing infant nasal microbiome"}]}, "fraser a": {"display": "Fraser A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912638", "pmid": "37213047", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MICROBIOME IN AGING GUT AND BRAIN (MiaGB) STUDY"}]}, "fraser ja": {"display": "Fraser JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945408", "pmid": "38085102", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prev…"}]}, "fratazzi c": {"display": "Fratazzi C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1121316", "pmid": "37060545", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}]}, "fraumene c": {"display": "Fraumene C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB19090", "pmid": "27671352", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}]}, "fredriksen s": {"display": "Fredriksen S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1233203", "pmid": null, "pos": "last", "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Microbiome of recirculating aquaculture systems under different particle loads (MikroRAS)"}]}, "freedman sb": {"display": "Freedman SB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1055141", "pmid": "42336834", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool shallow shotgun sequencing (ANTIBIO)"}]}, "freedman sd": {"display": "Freedman SD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177516", "pmid": "40483244", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Changes in Fecal Microbiota in Adults with Cystic Fibrosis with 6 Months of CFTR Modulato…"}]}, "freeman af": {"display": "Freeman AF", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}, {"acc": "PRJNA46333", "pmid": "24170601", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA471898", "pmid": "30397357", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The skin microbiome of DOCK8-deficient patients"}]}, "freeman sl": {"display": "Freeman SL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA390646", "pmid": "29242832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA633576", "pmid": "33479326", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}]}, "freeman ss": {"display": "Freeman SS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "frei k": {"display": "Frei K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "freidin mb": {"display": "Freidin MB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA957107", "pmid": "38291926", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Imrabiome - Rheumatoid project"}]}, "freije ca": {"display": "Freije CA", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}, {"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}, {"acc": "PRJNA623215", "pmid": "32349121", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing to evaluate massively multiplexed detection with Cas13"}]}, "freire m": {"display": "Freire M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA383868", "pmid": "32409670", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA649484", "pmid": "34389536", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "freitas ac": {"display": "Freitas AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "freitas g": {"display": "Freitas G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "freixer g": {"display": "Freixer G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "frenette j": {"display": "Frenette J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "frenk oquendo ac": {"display": "Frenk Oquendo AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "frese sa": {"display": "Frese SA", "group": false, "n_studies": 10, "studies": [{"acc": "PRJNA273761", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA327106", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA390646", "pmid": "29242832", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA390646", "pmid": "30338216", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA390646", "pmid": "31423298", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA630999", "pmid": "33665175", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA633576", "pmid": "33479326", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA63661", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "frey b": {"display": "Frey B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "frey c": {"display": "Frey C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1111475", "pmid": "39813050", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics in patients with central centrifugal cicatricial alopecia (CCCA)"}]}, "fricke wf": {"display": "Fricke WF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39023", "pmid": "24303043", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Treatment of recurrent Clostridioides difficile infection with Fecal Microbiota Transplan…"}, {"acc": "PRJEB39023", "pmid": "24440222", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Treatment of recurrent Clostridioides difficile infection with Fecal Microbiota Transplan…"}]}, "fridholm h": {"display": "Fridholm H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12636", "pmid": "26818667", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of P. acnes levels in NGS data from cancer samples"}]}, "friedberg i": {"display": "Friedberg I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB2778", "pmid": "22546241", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}]}, "friederich s": {"display": "Friederich S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}]}, "friedman es": {"display": "Friedman ES", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA1042647", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1042647", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1042647", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1106565", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1106565", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1145027", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1173239", "pmid": "40763731", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Amino acid competition shapes Acinetobacter baumannii gut carriage"}, {"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA893635", "pmid": "37297350", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}]}, "friedman je": {"display": "Friedman JE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA400115", "pmid": "35729161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}, {"acc": "PRJNA845806", "pmid": "35966074", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Trial of Diet in Gestational Diabetes Mellitus: Metabolic Consequences to Mother and Offs…"}]}, "friedrich aw": {"display": "Friedrich AW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB23207", "pmid": "29468143", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic characterization of the human intestinal microbiota in faecal samples from ST…"}]}, "friedrich m": {"display": "Friedrich M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA412411", "pmid": "34163067", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}]}, "friedrich r": {"display": "Friedrich R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37508", "pmid": "32528126", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "A treponemal genome from an historic plague victim supports recent emergence of yaws and…"}]}, "friedrichs a": {"display": "Friedrichs A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB3085", "pmid": "23236009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}]}, "friis-nielsen j": {"display": "Friis-Nielsen J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12636", "pmid": "26818667", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of P. acnes levels in NGS data from cancer samples"}]}, "frischmeyer-guerrerio pa": {"display": "Frischmeyer-Guerrerio PA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "fritz jv": {"display": "Fritz JV", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA379120", "pmid": "30504906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA489090", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA595749", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}]}, "fritz p": {"display": "Fritz P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA885840", "pmid": "38151716", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Superfoods Raw data"}]}, "fritz r": {"display": "Fritz R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA885840", "pmid": "38151716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Superfoods Raw data"}]}, "frohlich b": {"display": "Frohlich B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445215", "pmid": "29959351", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "frolova ms": {"display": "Frolova MS", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB11419", "pmid": "36032669", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJNA398089", "pmid": "36032669", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA400115", "pmid": "36032669", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}]}, "froment a": {"display": "Froment A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27005", "pmid": "30726303", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}]}, "fromentin s": {"display": "Fromentin S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB43611", "pmid": "35140493", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in gut microbiota during balneotherapy"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB60621", "pmid": "37989857", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Is the oral microbiota implicated in taste perception? Investigation of saliva and tongue…"}]}, "frontiers production office": {"display": "Frontiers Production Office", "group": true, "n_studies": 1, "studies": [{"acc": "PRJEB59277", "pmid": "37389213", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "PICU mngs PCP"}]}, "frost g": {"display": "Frost G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473348", "pmid": "36217535", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effect of bariatric surgery on the faecal metagenome"}]}, "frost hr": {"display": "Frost HR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "34454437", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "froula j": {"display": "Froula J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "fu b": {"display": "Fu B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA559861", "pmid": "32544460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cholesterol Metabolism by Uncultured Human Gut Bacteria Influences Host Cholesterol Level."}]}, "fu j": {"display": "Fu J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "fu l": {"display": "Fu L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA774819", "pmid": "35695455", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Highly specialized carbohydrate metabolism capability in Bifidobacterium strain associate…"}]}, "fu m": {"display": "Fu M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA784757", "pmid": "35902819", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "The Diagnosis Performance of Mycobacterium Tuberculosis Complex by Metagenomic Next-gener…"}]}, "fu q": {"display": "Fu Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA876377", "pmid": "37007478", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soil microbiome of grassland bulk soil Metagenome"}]}, "fu y": {"display": "Fu Y", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB18471", "pmid": "41695140", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamics of the gut microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA1256929", "pmid": "42237168", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Intestinal flora of piglets"}, {"acc": "PRJNA398187", "pmid": "41695140", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Targeted loci environmental"}, {"acc": "PRJNA477424", "pmid": "30619206", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "panda gut metagenome raw sequence reads Raw sequence reads"}, {"acc": "PRJNA592843", "pmid": "32100127", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Therapeutic effects of the in vitro cultured human gut microbiota as transplants on alter…"}]}, "fu z": {"display": "Fu Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB38192", "pmid": "37674580", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Utility of clinical metagenomics in diagnosing malignancies in a cohort of patients with…"}]}, "fuchs k": {"display": "Fuchs K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB66169", "pmid": "41540446", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient DNA study provides clues to leprosy susceptibility in medieval Europe"}]}, "fuchs r": {"display": "Fuchs R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1013332", "pmid": "38206014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Scalp microbiome study"}]}, "fuentes a": {"display": "Fuentes A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55075", "pmid": "38524774", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Molecular and phylogenetic characterization of the monkeypox outbreak in Andalusia, Spain"}]}, "fuentes s": {"display": "Fuentes S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB44119", "pmid": "35659906", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut colonisation by extended-spectrum β-lactamase-producing Escherichia coli and its asso…"}, {"acc": "PRJEB46777", "pmid": "25836986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Ulcerative Colitis."}, {"acc": "PRJNA555020", "pmid": "31676793", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "36380002", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}]}, "fugelseth d": {"display": "Fugelseth D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1009231", "pmid": "39019886", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Born in the twilight of antbiotics"}, {"acc": "PRJNA876384", "pmid": "36620054", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Microbial DNA extraction of high-host content and low biomass samples: optimized protocol…"}]}, "fuhrmeister er": {"display": "Fuhrmeister ER", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726052", "pmid": "35422497", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effects of drinking water chlorination on childrens intestinal flora and resistomes in Dh…"}]}, "fujii s": {"display": "Fujii S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "fujimaki k": {"display": "Fujimaki K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "fujimoto j": {"display": "Fujimoto J", "group": false, "n_studies": 11, "studies": [{"acc": "PRJDB4176", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB17632", "pmid": "37188713", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Subspecies in the global human gut microbiome"}, {"acc": "PRJEB6070", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6456", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB7774", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJNA217052", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Fiji COMP"}, {"acc": "PRJNA268964", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA290380", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA485056", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}]}, "fujimura ke": {"display": "Fujimura KE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB52295", "pmid": "38117587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Precocious infant gut microbiome reprograms enterocytes and promotes childhood obesity ri…"}]}, "fujisawa t": {"display": "Fujisawa T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "fujishiro j": {"display": "Fujishiro J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "fujita a": {"display": "Fujita A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1072081", "pmid": "40237336", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Identifying Biomarkers and Trajectories of Typical Neurodevelopment in Children, the BRAI…"}]}, "fukuda c": {"display": "Fukuda C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}]}, "fukuda k": {"display": "Fukuda K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB7462", "pmid": "25080337", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The genomic analysis of an unclutured bacterium IOLA detected from a patient with chronic…"}]}, "fukunaga k": {"display": "Fukunaga K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "fukuoka s": {"display": "Fukuoka S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "fulcher ja": {"display": "Fulcher JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA836336", "pmid": "36179550", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenome of MSM prior to and following HIV seroconversion"}]}, "fuller a": {"display": "Fuller A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA942254", "pmid": "37650612", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomics of fecal samples from ant-eating mammal species"}]}, "fung v": {"display": "Fung V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "furlaneto f": {"display": "Furlaneto F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA846723", "pmid": "39527605", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of oral administration of Bifidobacterium animalis subsp. lactis HN019 on the tre…"}]}, "furmanek m": {"display": "Furmanek M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "furst a": {"display": "Furst A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52147", "pmid": "35440708", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Association Between Milk Feedings in the Preterm Population, the Microbiome and Risk…"}, {"acc": "PRJNA1019702", "pmid": "39265573", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}]}, "furth ee": {"display": "Furth EE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "furuichi m": {"display": "Furuichi M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "furuta y": {"display": "Furuta Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA362284", "pmid": "31455406", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}]}, "fuss j": {"display": "Fuss J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB86263", "pmid": "39218875", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gender-affirming hormonal therapy induces a gender-concordant fecal metagenome transition…"}]}, "fussel j": {"display": "Füssel J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701961", "pmid": "37069665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA701961", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "futreal am": {"display": "Futreal AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "futreal pa": {"display": "Futreal PA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA734860", "pmid": "34633706", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "gabard-durnam lj": {"display": "Gabard-Durnam LJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "42311381", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "gacasan ca": {"display": "Gacasan CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1071073", "pmid": "38530358", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Transgender Mouse Bone Microbiome"}]}, "gacesa r": {"display": "Gacesa R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "gaddy ja": {"display": "Gaddy JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "gadhvi ir": {"display": "Gadhvi IR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB26614", "pmid": "31754151", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Khambhat"}, {"acc": "PRJEB26615", "pmid": "31754151", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Kutch"}]}, "gaffar sma": {"display": "Gaffar SMA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "gaffney pm": {"display": "Gaffney PM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}]}, "gagic d": {"display": "Gagic D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "gagliani n": {"display": "Gagliani N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "gahan cgm": {"display": "Gahan CGM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352475", "pmid": "36420990", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "gaia n": {"display": "Gaïa N", "group": false, "n_studies": 21, "studies": [{"acc": "PRJEB20595", "pmid": "30065706", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hepatic brucelloma studied by next generation sequencing"}, {"acc": "PRJEB20877", "pmid": "28930150", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Detection of bacterial pathogens from broncho-alveolar lavage by next-generation sequenci…"}, {"acc": "PRJEB21816", "pmid": "30991963", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Listeria monocytogenes abdominal periaortitis"}, {"acc": "PRJEB24753", "pmid": "31448292", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Neisseria meningitidis"}, {"acc": "PRJEB24843", "pmid": "30714464", "pos": null, "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "The intestinal microbiota predisposes to traveller’s diarrhoea and to the carriage of mul…"}, {"acc": "PRJEB25228", "pmid": "31616669", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Cardiobacterium hominis"}, {"acc": "PRJEB26080", "pmid": "30356779", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Microbiota of infected dental roots indentified by 16S rRNA gene amplicon sequencing"}, {"acc": "PRJEB33794", "pmid": "32185143", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Changes in Microbiota Profiles After Prolonged Frozen Storage of Stool Suspensions"}, {"acc": "PRJEB35816", "pmid": "32585945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota of carriers of extended-spectrum beta-lactamase or carbapenemase-producing…"}, {"acc": "PRJEB36797", "pmid": "32711187", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The GLP-1R agonist liraglutide limits hepatic lipotoxicity and inflammatory response in m…"}, {"acc": "PRJEB39870", "pmid": "33646178", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Oral microbial community profiles in Parkinson’s disease"}, {"acc": "PRJEB43505", "pmid": "34535959", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut barrier and microbiota changes with glycine and branched chain amino acids supplement…"}, {"acc": "PRJEB43581", "pmid": "34295911", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}, {"acc": "PRJEB43581", "pmid": "34737977", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}, {"acc": "PRJEB44108", "pmid": "37065965", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A bone of contention"}, {"acc": "PRJEB44214", "pmid": "34983654", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in the gut microbiome in colon cancer surgery patients: a pilot observational stu…"}, {"acc": "PRJEB44898", "pmid": "34295911", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hyperammonemia syndrome following lung transplantation."}, {"acc": "PRJEB47877", "pmid": "37938717", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Challenges in bacterial DNA enrichment and quantification in tissues"}, {"acc": "PRJEB50897", "pmid": "40244028", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental pulp"}, {"acc": "PRJEB57944", "pmid": "40182766", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Diagnosing endocarditis by metagenomics"}, {"acc": "PRJEB60931", "pmid": "37735787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Mycoplasma genitalium endocarditis"}, {"acc": "PRJEB65720", "pmid": "37722530", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acute bacterial meningitis due to Neisseria meningitidis serotype B missed by a multiplex…"}]}, "gaiser r": {"display": "Gaiser R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "gajer p": {"display": "Gajer P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA774819", "pmid": "35695455", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Highly specialized carbohydrate metabolism capability in Bifidobacterium strain associate…"}]}, "galagan s": {"display": "Galagan S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "galan p": {"display": "Galan P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "galand pe": {"display": "Galand PE", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "galazzo g": {"display": "Galazzo G", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1071720", "pmid": "38572716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FECBUD Study Fecal Metagenomes"}, {"acc": "PRJNA1121295", "pmid": "38964511", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FEDEX Study Fecal Metagenomes"}, {"acc": "PRJNA688274", "pmid": "34092249", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Netherland Travelers"}]}, "gale ca": {"display": "Gale CA", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1019702", "pmid": "39043677", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "39265573", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1198101", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic re-sequencing of human milk"}, {"acc": "PRJNA903921", "pmid": "40469735", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Mycobiome Maturation and Its Determinants during Infancy: A Comparison of Shotgun Met…"}]}, "galffy g": {"display": "Galffy G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA626477", "pmid": "34002024", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut microbiota Raw sequence reads with and without cancer cachexia"}]}, "gall m": {"display": "Gall M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "galleron n": {"display": "Galleron N", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB4413", "pmid": "23985875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary intervention impact on gut microbial gene richness based on SOLiD next generation…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB48663", "pmid": "35311446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Increasing the diversity of dietary fibres in a daily-consumed bread modifies gut microbi…"}, {"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}, {"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "gallia r": {"display": "Gallia R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "gallo a": {"display": "Gallo A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1294276", "pmid": "41019762", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human pegivirus isolate Pegi-ITA-25, complete genome."}]}, "gallo g": {"display": "Gallo G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "gallo rl": {"display": "Gallo RL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA551026", "pmid": "32130897", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Monogenic skin disease driven by staphylococcal dysbiosis"}]}, "galloway r": {"display": "Galloway R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}]}, "galloway-pena jr": {"display": "Galloway-Pena JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "galluzzi l": {"display": "Galluzzi L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "galo n": {"display": "Galo N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "galperina a": {"display": "Galperina A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "40315414", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB70237", "pmid": null, "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "galvez ejc": {"display": "Gálvez EJC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA947377", "pmid": "38366600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Establishment of a non-Westernized gut microbiota in men who have sex with men is associa…"}]}, "gamaarachchi h": {"display": "Gamaarachchi H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "gamez-valdez js": {"display": "Gámez-Valdez JS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1260751", "pmid": "41536238", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal Obesity Alters Human Milk Oligosaccharides Content and Promotes Early Acquisitio…"}]}, "gamnsi njamnshi k": {"display": "Gamnsi Njamnshi K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1088476", "pmid": "40321713", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Cameroonian blackflies (Diptera: Simuliidae) harbour a plethora of (RNA) viruses"}]}, "ganaba r": {"display": "Ganaba R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1113165", "pmid": "40102379", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}]}, "gand m": {"display": "Gand M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1031997", "pmid": "38659981", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}, {"acc": "PRJNA954551", "pmid": "37537550", "pos": "first", "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Nanopore sequencing of HMW-DNA to compare DNA extraction methods for metagenomics"}]}, "ganda e": {"display": "Ganda E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA667736", "pmid": null, "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Milk Metagenome Anomaly Detection Project"}]}, "gandara d": {"display": "Gandara D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "gandara j": {"display": "Gandara J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "gandasegui j": {"display": "Gandasegui J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "gandini s": {"display": "Gandini S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "gandy da": {"display": "Gandy DA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "ganesan sm": {"display": "Ganesan SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA508385", "pmid": "27991530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Comparative metagenomics reveals taxonomically idiosyncratic yet functionally congruent c…"}]}, "gangavarapu k": {"display": "Gangavarapu K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "gangiredla j": {"display": "Gangiredla J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA336518", "pmid": "29954907", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA336518", "pmid": "29954914", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA336518", "pmid": "35023776", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA336518", "pmid": "35616377", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}]}, "ganiev i": {"display": "Ganiev I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1366497", "pmid": "42553090", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Bifidobacterium- and Escherichia-dominated gut microbiome metabolic shifts in tuberculosi…"}]}, "gantois n": {"display": "Gantois N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27005", "pmid": "30726303", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}]}, "gantt s": {"display": "Gantt S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1045584", "pmid": "39185682", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of SARS-CoV-2 in stool sample from women living with HIV and HIV-negative women an…"}, {"acc": "PRJNA338014", "pmid": "29554870", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA635738", "pmid": "33727396", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Breast milk Microbiome/Virome of HIV+ Kenyan Women is Not Altered by Immunosuppression"}]}, "ganzle mg": {"display": "Gänzle MG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA494875", "pmid": "30914068", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Reconstructions of Gut Microbiome in Weanling Pigs"}]}, "gao d": {"display": "Gao D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1052964", "pmid": "39034349", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA1052964", "pmid": "40860434", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}]}, "gao g": {"display": "Gao G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA902684", "pmid": "39135694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome level reveals the regulatory effect of probiotics to mastitis rats"}]}, "gao gf": {"display": "Gao GF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA936938", "pmid": "36992458", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "searching for viruses in Asiatic toad Raw sequence reads"}]}, "gao h": {"display": "Gao H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}, {"acc": "PRJNA986854", "pmid": "40467587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "stool sample of paired mother-infant for 16S rRNA sequencing analysis"}]}, "gao j": {"display": "Gao J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1002114", "pmid": "37823665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Direct prediction of carbapenem-resistance for Pseudomonas aeruginosa by whole genome seq…"}]}, "gao q": {"display": "Gao Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}]}, "gao w": {"display": "Gao W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1107349", "pmid": "38980166", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Polysaccharide degradation by microbial communities"}]}, "gao x": {"display": "Gao X", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA775062", "pmid": "42326398", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Landscapes of bacterial, viral and metabolic signatures and their interaction in early-we…"}, {"acc": "PRJNA812695", "pmid": "37714338", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA847006", "pmid": "42326398", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA876377", "pmid": "37007478", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soil microbiome of grassland bulk soil Metagenome"}]}, "gao y": {"display": "Gao Y", "group": false, "n_studies": 16, "studies": [{"acc": "PRJEB6456", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA273761", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA384716", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA473126", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA63661", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "gao yl": {"display": "Gao YL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA866095", "pmid": "36046746", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Genome sequencing and assembly"}]}, "gao z": {"display": "Gao Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}]}, "garabed r": {"display": "Garabed R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA894152", "pmid": "37715296", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Long read infant/young children fecal and environmental samples"}]}, "garabedian e": {"display": "Garabedian E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}]}, "garaiova i": {"display": "Garaiova I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB82926", "pmid": "40431157", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic Supplementation Impacts Gut Microbiota Development in Infants at Risk of Atopy:…"}]}, "garaventa a": {"display": "Garaventa A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63351", "pmid": "38104504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neuroblastoma is associated with alterations in gut microbiome composition subsequent to…"}]}, "garbarino j": {"display": "Garbarino J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "garcia ba": {"display": "Garcia BA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "garcia bardales pf": {"display": "Garcia Bardales PF", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA834762", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "36251729", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "38427700", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA837236", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "36251729", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "38427700", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA912682", "pmid": "38272215", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "38427700", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "39727415", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}]}, "garcia f": {"display": "Garcia F", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB55075", "pmid": "38524774", "pos": "last", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Molecular and phylogenetic characterization of the monkeypox outbreak in Andalusia, Spain"}, {"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "garcia i": {"display": "Garcia I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "garcia kf": {"display": "Garcia KF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "garcia l": {"display": "Garcia L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA949443", "pmid": "37175775", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Targeted Locus (Loci)"}]}, "garcia mai": {"display": "Garcia MAI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA838575", "pmid": "40623174", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "garcia mp": {"display": "García MP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB72531", "pmid": "38424099", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prebiotic intervention for muscle function and cognition"}]}, "garcia-garcia ml": {"display": "García-García ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB71847", "pmid": "38785596", "pos": "last", "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Gut and respiratory tract microbiota in children younger than 12 months hospitalised for…"}]}, "garcia-gonzalez n": {"display": "García-González N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352475", "pmid": "36420990", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "garcia-houchins s": {"display": "Garcia-Houchins S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14474", "pmid": "28539477", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}]}, "garcia-larroy j": {"display": "Garcia-Larroy J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "garcia-lopez r": {"display": "García-López R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB3206", "pmid": "23760301", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of the viral and microbial metagenomes associated with the Crohn's disease"}]}, "garcia-mantrana i": {"display": "García-Mantrana I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1227883", "pmid": "31053102", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}]}, "garcia-maurino c": {"display": "Garcia-Mauriño C", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA400115", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}, {"acc": "PRJNA806984", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}, {"acc": "PRJNA994433", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Variability of Bifidobacterium Species in the Infant Gut is Independent of M…"}]}, "garcia-perez i": {"display": "Garcia-Perez I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473348", "pmid": "36217535", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effect of bariatric surgery on the faecal metagenome"}]}, "garczarek l": {"display": "Garczarek L", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "gardner cd": {"display": "Gardner CD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177009", "pmid": "40738103", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A human milk oligosaccharide alters the microbiome, circulating hormones, cytokines and m…"}]}, "gardner i": {"display": "Gardner I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "gardner sn": {"display": "Gardner SN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352376", "pmid": "28072390", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}]}, "garg p": {"display": "Garg P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "garg s": {"display": "Garg S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39023", "pmid": "24303043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Treatment of recurrent Clostridioides difficile infection with Fecal Microbiota Transplan…"}, {"acc": "PRJEB39023", "pmid": "24440222", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Treatment of recurrent Clostridioides difficile infection with Fecal Microbiota Transplan…"}]}, "gariglio m": {"display": "Gariglio M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "garin-fernandez a": {"display": "Garin-Fernandez A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21210", "pmid": "29866485", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "North Sea Virome"}]}, "garlet a": {"display": "Garlet A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1013332", "pmid": "38206014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Scalp microbiome study"}]}, "garma m": {"display": "Garma M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA630999", "pmid": "33665175", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}]}, "garmaeva s": {"display": "Garmaeva S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46943", "pmid": "40615392", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": null, "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}, {"acc": "PRJNA524703", "pmid": "40615392", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}]}, "garneau j": {"display": "Garneau J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "garneau jr": {"display": "Garneau JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA300541", "pmid": "38049420", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "garratt b": {"display": "Garratt B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473348", "pmid": "36217535", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effect of bariatric surgery on the faecal metagenome"}]}, "garrett ws": {"display": "Garrett WS", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}, {"acc": "PRJNA398089", "pmid": "35614211", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "garrido-castro ac": {"display": "Garrido-Castro AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1295573", "pmid": "41760690", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The intestinal microbiome of patients with newly diagnosed invasive breast cancer and duc…"}]}, "garry rf": {"display": "Garry RF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "garssen j": {"display": "Garssen J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542703", "pmid": "42131447", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}]}, "garud n": {"display": "Garud N", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB5224", "pmid": "27803195", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA268964", "pmid": "27803195", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA271618", "pmid": "27803195", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Baboon feces Metagenome"}, {"acc": "PRJNA278393", "pmid": "27803195", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA422434", "pmid": "27803195", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA48479", "pmid": "27803195", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "garud nr": {"display": "Garud NR", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "35545448", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "35545448", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA352475", "pmid": "35545448", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA422434", "pmid": "35545448", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA475246", "pmid": "35545448", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "garza dr": {"display": "Garza DR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87602", "pmid": "37243505", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteria in colitis associated cancer development"}]}, "garzel l": {"display": "Garzel L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA546004", "pmid": "31451108", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Maturation of the infant rhesus macaque (Macaca mulatta) gut microbiome and its role in t…"}, {"acc": "PRJNA729051", "pmid": "34158595", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Growth faltering regardless of chronic diarrhea is associated with mucosal immune dysfunc…"}]}, "garzetti d": {"display": "Garzetti D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}, {"acc": "PRJEB26596", "pmid": "29051233", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}]}, "gasasira a": {"display": "Gasasira A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "gasbarrini a": {"display": "Gasbarrini A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA643802", "pmid": "32859933", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "FMT for diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal…"}]}, "gaston jr": {"display": "Gaston JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081394", "pmid": "38564694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sinus, throat, and sputum airway microbiology in cystic fibrosis"}]}, "gaudreau po": {"display": "Gaudreau PO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "gauguier d": {"display": "Gauguier D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "gauliard e": {"display": "Gauliard E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "gaulke ca": {"display": "Gaulke CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA747032", "pmid": "34636674", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of library preparation on metagenomic profiles"}]}, "gaur m": {"display": "Gaur M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1020650", "pmid": "36676144", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Apical Periodontal sample Metagenomes"}]}, "gause h": {"display": "Gause H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA717139", "pmid": "34154658", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitaliz…"}]}, "gautam gp": {"display": "Gautam GP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49206", "pmid": "30439937", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}]}, "gautam y": {"display": "Gautam Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49206", "pmid": "30439937", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}]}, "gauthier npg": {"display": "Gauthier NPG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1092681", "pmid": "38696336", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Validation of an automated, end-to-end metagenomic sequencing assay for agnostic detectio…"}]}, "gautier l": {"display": "Gautier L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}]}, "gaye a": {"display": "Gaye A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "gazi ma": {"display": "Gazi MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "gbanya m": {"display": "Gbanya M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "ge d": {"display": "Ge D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "ge x": {"display": "Ge X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1033532", "pmid": "38014294", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Evaluating the impact of pharmaceuticals on the human gut microbiome Raw sequence reads"}]}, "ge z": {"display": "Ge Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1170175", "pmid": "40248366", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Vaginal Virome of Healthy Women and Patients with Vaginitis"}]}, "gea-banacloche j": {"display": "Gea-Banacloche J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156457", "pmid": "39731681", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acanthamoeba sequencing"}]}, "geary jh": {"display": "Geary JH", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1173239", "pmid": "40763731", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Amino acid competition shapes Acinetobacter baumannii gut carriage"}]}, "gebreyes w": {"display": "Gebreyes W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "32351922", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "33042218", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "33553097", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "41185061", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "geddes dt": {"display": "Geddes DT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819247", "pmid": "36060782", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome Raw sequence reads"}]}, "geerlings se": {"display": "Geerlings SE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46779", "pmid": "29566738", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Extended-Spectrum Beta Lactamase Carriers."}]}, "geffen y": {"display": "Geffen Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA628604", "pmid": "32511695", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}]}, "geffers r": {"display": "Geffers R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51501", "pmid": "36416760", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Predicting butyrate- and propionate-forming bacteria of gut microbiota from sequencing da…"}, {"acc": "PRJEB51501", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Predicting butyrate- and propionate-forming bacteria of gut microbiota from sequencing da…"}]}, "gehring s": {"display": "Gehring S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB76677", "pmid": "28039159", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota differs between children with Inflammatory Bowel Disease and healthy sibli…"}, {"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "gehrke l": {"display": "Gehrke L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "gellatly sl": {"display": "Gellatly SL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA313232", "pmid": "27388460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteroidales group S24-7 population genome recovery"}, {"acc": "PRJNA562766", "pmid": "33208745", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}]}, "geller-mcgrath d": {"display": "Geller-McGrath D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA376566", "pmid": "29925423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}]}, "gendronneau g": {"display": "Gendronneau G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1040852", "pmid": "37350224", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CHAN skin Metagenome"}]}, "geng b": {"display": "Geng B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52147", "pmid": "35440708", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Association Between Milk Feedings in the Preterm Population, the Microbiome and Risk…"}]}, "geng j": {"display": "Geng J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB6456", "pmid": "33753486", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA474601", "pmid": "29988510", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Loss of intestinal microbes in cholecystectomy patients"}]}, "geng m": {"display": "Geng M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA524703", "pmid": "40600714", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA835720", "pmid": "40600714", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human feces Viral/Bacterial Metagenome"}]}, "geng rl": {"display": "Geng RL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA866095", "pmid": "36046746", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Genome sequencing and assembly"}]}, "geng y": {"display": "Geng Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA973819", "pmid": "38188910", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Pathogenetic characterization of a Micrococcus luteus strain isolated from an infant"}]}, "gennaioli e": {"display": "Gennaioli E", "group": false, "n_studies": 36, "studies": [{"acc": "PRJDB4525", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics of fecal bacterial consortium inhabiting healthy Asian children"}, {"acc": "PRJEB12669", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB32631", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB41102", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB42363", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB6456", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA215106", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA268964", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA290380", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA300541", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA322188", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA345144", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA422569", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA436562", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489693", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA497734", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA521878", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA549787", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA633576", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA644725", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA686821", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics data from human stool microorganism Raw sequence reads"}, {"acc": "PRJNA688164", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA695570", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA833139", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gender-specific cross-generational microbial persistence of human gut microbes"}, {"acc": "PRJNA991269", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "gennings c": {"display": "Gennings C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39474439", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}, {"acc": "PRJNA975184", "pmid": "39640590", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "genovese g": {"display": "Genovese G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "gentile i": {"display": "Gentile I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675110", "pmid": "33659220", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiome signature in COVID-19 positive patients"}]}, "genton l": {"display": "Genton L", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB39870", "pmid": "33646178", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Oral microbial community profiles in Parkinson’s disease"}, {"acc": "PRJEB43505", "pmid": "34535959", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut barrier and microbiota changes with glycine and branched chain amino acids supplement…"}, {"acc": "PRJEB43581", "pmid": "34737977", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}]}, "gentry ec": {"display": "Gentry EC", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA819194", "pmid": "35606844", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "KRuMBS: Kyphosid Ruminant Microbial Biodigestor of Seaweeds"}]}, "george ks": {"display": "George KS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27932649", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "george rn": {"display": "George RN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "geraghty aa": {"display": "Geraghty AA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "37230981", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "gerber a": {"display": "Gerber A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA60545", "pmid": "24706600", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes isolated from NE Brazil"}]}, "gerber gk": {"display": "Gerber GK", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32631", "pmid": "40328944", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA400628", "pmid": "40328944", "pos": null, "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "Escherichia coli Genome sequencing and assembly"}]}, "gerber js": {"display": "Gerber JS", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA903921", "pmid": "40469735", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Mycobiome Maturation and Its Determinants during Infancy: A Comparison of Shotgun Met…"}]}, "gerber si": {"display": "Gerber SI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28369502", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "gerdes vea": {"display": "Gerdes VEA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "gerhards g": {"display": "Gerhards G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB36413", "pmid": "32884081", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Yersinia pestis strains from Latvia show depletion of the pla virulence gene at the end o…"}, {"acc": "PRJEB42185", "pmid": "34192537", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}]}, "german jb": {"display": "German JB", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB15633", "pmid": "35406036", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJNA390646", "pmid": "29242832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}]}, "gern je": {"display": "Gern JE", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB46659", "pmid": "38782975", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB46659", "pmid": "41265504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJNA1078287", "pmid": "39425237", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Infant Upper Respiratory Microbiome"}, {"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}]}, "gerner rr": {"display": "Gerner RR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}]}, "gershenwald je": {"display": "Gershenwald JE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "gershwin me": {"display": "Gershwin ME", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}]}, "gesang z": {"display": "Gesang Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA624740", "pmid": "33036549", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of yak faecal microbiota"}]}, "gesquiere lr": {"display": "Gesquiere LR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB29065", "pmid": "37158607", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Daily sampling reveals personalized diet-microbiome associations"}, {"acc": "PRJNA290380", "pmid": "37158607", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "gessner a": {"display": "Gessner A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "gettle sl": {"display": "Gettle SL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA856701", "pmid": "36165604", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin microbiome of forehead in children with and without acne"}]}, "geum hm": {"display": "Geum HM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB51728", "pmid": "39341154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "geva-zatorsky n": {"display": "Geva-Zatorsky N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA628604", "pmid": "32511695", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}]}, "gevers d": {"display": "Gevers D", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": "first", "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": "first", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}, {"acc": "PRJEB7772", "pmid": "25619688", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}, {"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "gewirtz at": {"display": "Gewirtz AT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}]}, "ghai r": {"display": "Ghai R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884026", "pmid": "36724220", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic investigation of lake Issyk-Kul, Kyrgyzstan"}]}, "ghale r": {"display": "Ghale R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "ghanem m": {"display": "Ghanem M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "32351922", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "33553097", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "ghani r": {"display": "Ghani R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60914", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Roles of gut microbiota-mediated nutrient competition and metabolite inhibition in the in…"}]}, "gharaibeh rz": {"display": "Gharaibeh RZ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA349463", "pmid": "28915922", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Urban vs. Rural China Microbiome"}]}, "gharbia s": {"display": "Gharbia S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15257", "pmid": "28149696", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB15257", "pmid": "34362295", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}]}, "gharechahi j": {"display": "Gharechahi J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746430", "pmid": "35676509", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "camel rumen metagenome Raw sequence reads"}]}, "ghauri a": {"display": "Ghauri A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "ghazal p": {"display": "Ghazal P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1080233", "pmid": "39214237", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Breathing Together severe wheeze and asthma cohort"}]}, "ghensi p": {"display": "Ghensi P", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB15371", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJNA231909", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "30661755", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA356102", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA48479", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA504891", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "ghimire s": {"display": "Ghimire S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA484151", "pmid": "31379808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural and Urban infant''s fecal microbiota study"}]}, "ghiringhelli f": {"display": "Ghiringhelli F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "ghogomu sm": {"display": "Ghogomu SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344863", "pmid": "27666390", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral Metagenomics of fecal samples of fruit bats"}]}, "ghosh ts": {"display": "Ghosh TS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA300541", "pmid": "37118093", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "ghozlane a": {"display": "Ghozlane A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}, {"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "ghugre p": {"display": "Ghugre P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1445932", "pmid": "42669658", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of a complementary feeding intervention on the gut microbiota in 12-18-month- old…"}]}, "giannopoulou c": {"display": "Giannopoulou C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39870", "pmid": "33646178", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Oral microbial community profiles in Parkinson’s disease"}]}, "giannou ad": {"display": "Giannou AD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "giavarini f": {"display": "Giavarini F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA615842", "pmid": "33494335", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}]}, "gibbons sm": {"display": "Gibbons SM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1143669", "pmid": "39707483", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of neonates exposed to HIV"}, {"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}]}, "gibbs ra": {"display": "Gibbs RA", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1084251", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tryptophan metabolites in fecal samples from healthy humans"}, {"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "39282326", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1195144", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1224818", "pmid": "38361816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with n…"}]}, "gibson mk": {"display": "Gibson MK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA301903", "pmid": "27572443", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}]}, "gibson te": {"display": "Gibson TE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32631", "pmid": "40328944", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA400628", "pmid": "40328944", "pos": "last", "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "Escherichia coli Genome sequencing and assembly"}]}, "gichuki bm": {"display": "Gichuki BM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "giebel ha": {"display": "Giebel HA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA811790", "pmid": "37816747", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial and viral dispersal along the natural water cycle"}]}, "giera m": {"display": "Giera M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44119", "pmid": "35659906", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut colonisation by extended-spectrum β-lactamase-producing Escherichia coli and its asso…"}]}, "giffin k": {"display": "Giffin K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37508", "pmid": "32528126", "pos": "first", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "A treponemal genome from an historic plague victim supports recent emergence of yaws and…"}]}, "giffin kl": {"display": "Giffin KL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "gigas j": {"display": "Gigas J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "giglio mg": {"display": "Giglio MG", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA275349", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA48479", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "gigliucci f": {"display": "Gigliucci F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB23207", "pmid": "29468143", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic characterization of the human intestinal microbiota in faecal samples from ST…"}]}, "gil j": {"display": "Gil J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019500", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}]}, "gil-raga f": {"display": "Gil-Raga F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1227883", "pmid": "31053102", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}]}, "gilbert j": {"display": "Gilbert J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1086674", "pmid": "39138352", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Impact of Oral Feedings on the Preterm Infant Microbiome and Metabolome"}]}, "gilbert ja": {"display": "Gilbert JA", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB14474", "pmid": "28539477", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}, {"acc": "PRJEB20527", "pmid": "26627545", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Corticosteroid therapy and airflow obstruction influence the bronchial microbiome, which…"}, {"acc": "PRJEB29065", "pmid": "37158607", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Daily sampling reveals personalized diet-microbiome associations"}, {"acc": "PRJEB52147", "pmid": "35440708", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Association Between Milk Feedings in the Preterm Population, the Microbiome and Risk…"}, {"acc": "PRJNA290380", "pmid": "37158607", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "gilbert mt": {"display": "Gilbert MT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "gilbert mtp": {"display": "Gilbert MTP", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB64334", "pmid": "38294254", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Multi-omics of host-gut microbiota interactions in healthy and parasitized farmed Atlanti…"}, {"acc": "PRJNA943417", "pmid": "37919016", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Six novel misos"}]}, "gilbert-diamond d": {"display": "Gilbert-Diamond D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "35906254", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "gilchrist s": {"display": "Gilchrist S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1011899", "pmid": "40155393", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Collaborative spiking study 2B for high throughput sequencing for virus detection"}]}, "giles lc": {"display": "Giles LC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "gill l": {"display": "Gill L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA546004", "pmid": "31451108", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Maturation of the infant rhesus macaque (Macaca mulatta) gut microbiome and its role in t…"}, {"acc": "PRJNA729051", "pmid": "34158595", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Growth faltering regardless of chronic diarrhea is associated with mucosal immune dysfunc…"}]}, "gill s": {"display": "Gill S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "gill sk": {"display": "Gill SK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB51728", "pmid": "39341154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "gille c": {"display": "Gille C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB76913", "pmid": "39881980", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors affecting the gut microbiota composition of children with CHD"}, {"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "gillece jd": {"display": "Gillece JD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "28721231", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "29075368", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "gilleece m": {"display": "Gilleece M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1011899", "pmid": "40155393", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Collaborative spiking study 2B for high throughput sequencing for virus detection"}]}, "gilles m": {"display": "Gilles M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80549", "pmid": "41196055", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterisation of the forehead and armpit skin microbiome of healthy individuals using…"}]}, "gillor o": {"display": "Gillor O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "gilman a": {"display": "Gilman A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "gilman rh": {"display": "Gilman RH", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1138246", "pmid": "40755247", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal metagenomes of Peruvian children"}, {"acc": "PRJNA268964", "pmid": "27172044", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "27172044", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "gilroy n": {"display": "Gilroy N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "gilroy r": {"display": "Gilroy R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1222153", "pmid": "41547860", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Waltham Catalogue for the Canine Gut Microbiome: A complete taxonomic and functional cata…"}, {"acc": "PRJNA722408", "pmid": "36076058", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}, {"acc": "PRJNA722408", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}]}, "gilson d": {"display": "Gilson D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "34609275", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "gimeno-alcaniz j": {"display": "Gimeno-Alcañiz J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1227883", "pmid": "31053102", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}]}, "gin ky": {"display": "Gin KY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA750571", "pmid": "35306253", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Resistome in sewage surviellance"}]}, "gin t": {"display": "Gin T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}]}, "gines p": {"display": "Ginès P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40200", "pmid": "32941879", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}]}, "gingras h": {"display": "Gingras H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "ginn an": {"display": "Ginn AN", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1200893", "pmid": "41809988", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}, {"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}, {"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "ginouves m": {"display": "Ginouves M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA371487", "pmid": "28715422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Leishmania RNA Virus Genomics'' study from French Guiana"}]}, "giordano j": {"display": "Giordano J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1295573", "pmid": "41760690", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The intestinal microbiome of patients with newly diagnosed invasive breast cancer and duc…"}]}, "giordano m": {"display": "Giordano M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA636619", "pmid": "34053518", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome (DNAseq) of italian fermented sausages"}]}, "giralt sa": {"display": "Giralt SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "girard m": {"display": "Girard M", "group": false, "n_studies": 13, "studies": [{"acc": "PRJEB20595", "pmid": "30065706", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hepatic brucelloma studied by next generation sequencing"}, {"acc": "PRJEB20877", "pmid": "28930150", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Detection of bacterial pathogens from broncho-alveolar lavage by next-generation sequenci…"}, {"acc": "PRJEB21816", "pmid": "30991963", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Listeria monocytogenes abdominal periaortitis"}, {"acc": "PRJEB24753", "pmid": "31448292", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Neisseria meningitidis"}, {"acc": "PRJEB24843", "pmid": "30714464", "pos": null, "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "The intestinal microbiota predisposes to traveller’s diarrhoea and to the carriage of mul…"}, {"acc": "PRJEB25228", "pmid": "31616669", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Cardiobacterium hominis"}, {"acc": "PRJEB26080", "pmid": "30356779", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Microbiota of infected dental roots indentified by 16S rRNA gene amplicon sequencing"}, {"acc": "PRJEB33794", "pmid": "32185143", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Changes in Microbiota Profiles After Prolonged Frozen Storage of Stool Suspensions"}, {"acc": "PRJEB35816", "pmid": "32585945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota of carriers of extended-spectrum beta-lactamase or carbapenemase-producing…"}, {"acc": "PRJEB39870", "pmid": "33646178", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Oral microbial community profiles in Parkinson’s disease"}, {"acc": "PRJEB44214", "pmid": "34983654", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in the gut microbiome in colon cancer surgery patients: a pilot observational stu…"}, {"acc": "PRJEB47877", "pmid": "37938717", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Challenges in bacterial DNA enrichment and quantification in tissues"}, {"acc": "PRJEB57944", "pmid": "40182766", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Diagnosing endocarditis by metagenomics"}]}, "girardi dl": {"display": "Girardi DL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA847605", "pmid": "36565815", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosa…"}]}, "girdland-flink l": {"display": "Girdland-Flink L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}]}, "girotra m": {"display": "Girotra M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39023", "pmid": "24303043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Treatment of recurrent Clostridioides difficile infection with Fecal Microbiota Transplan…"}, {"acc": "PRJEB39023", "pmid": "24440222", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Treatment of recurrent Clostridioides difficile infection with Fecal Microbiota Transplan…"}]}, "giroux r": {"display": "Giroux R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "givskov m": {"display": "Givskov M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396840", "pmid": "28979798", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomic and metatranscriptomic analysis of saliva reveals disease-associated microbio…"}]}, "gjonbalaj m": {"display": "Gjonbalaj M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}]}, "gladden-young a": {"display": "Gladden-Young A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}, {"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "gladstone m": {"display": "Gladstone M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "42311381", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "gladstone ra": {"display": "Gladstone RA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB32631", "pmid": "36456554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}]}, "gladyshev vn": {"display": "Gladyshev VN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "glaser ca": {"display": "Glaser CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1261853", "pmid": "38816345", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia sp. CA6269 genome sequencing from clinical and environmental samples"}]}, "glatthardt t": {"display": "Glatthardt T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1055141", "pmid": "42336834", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool shallow shotgun sequencing (ANTIBIO)"}]}, "glickman ms": {"display": "Glickman MS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445968", "pmid": "28883399", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA445968", "pmid": "30282828", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}]}, "glitza ic": {"display": "Glitza IC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "glockner fo": {"display": "Glöckner FO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21210", "pmid": "29866485", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "North Sea Virome"}]}, "glorieux g": {"display": "Glorieux G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "glose ka": {"display": "Glose KA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA483343", "pmid": "30305736", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "glowienka m": {"display": "Głowienka M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA943135", "pmid": "37577378", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diarrhoeal-associated gut dysbiosis in cancer and inflammatory bowel disease patients i…"}]}, "glownia d": {"display": "Glownia D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "gnirke a": {"display": "Gnirke A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "gnjatic s": {"display": "Gnjatic S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA946744", "pmid": "39666007", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Homo sapiens metagenomic sequences"}]}, "goad d": {"display": "Goad D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1206145", "pmid": "40898384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of the gut microbiome from infants enrolled in a randomized controlled…"}, {"acc": "PRJNA1222487", "pmid": "42293161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome signatures and reduced Faecalibacterium and Roseburia in infants with earl…"}]}, "gobbi a": {"display": "Gobbi A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1094595", "pmid": "39449043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "SSLR"}, {"acc": "PRJNA926386", "pmid": "37635262", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Phagestorage"}]}, "gobbi fg": {"display": "Gobbi FG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB121228", "pmid": "38793608", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}, {"acc": "PRJEB121228", "pmid": "41683794", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}]}, "gobert g": {"display": "Gobert G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA145005", "pmid": "22030749", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}]}, "gobourne a": {"display": "Gobourne A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA259179", "pmid": "25337874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Studies of intestinal microbiome and infection resistance"}]}, "godfrey km": {"display": "Godfrey KM", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}, {"acc": "PRJNA707065", "pmid": "35075183", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "NiPPeR Study - pilot microbiome investigation"}]}, "godny l": {"display": "Godny L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA524170", "pmid": "31605691", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistant microbiome underlies antibiotic therapy in pouchitis"}]}, "godron n": {"display": "Godron N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1262354", "pmid": "41603547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMBARK - Establishing a Monitoring Baseline for Antimicrobial Resistance in Key environme…"}]}, "goedicke-fritz s": {"display": "Goedicke-Fritz S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "goessler t": {"display": "Goessler T", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1108908", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1108960", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1109334", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}]}, "gogain j": {"display": "Gogain J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "goh a": {"display": "Goh A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "goh aen": {"display": "Goh AEN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "goh j": {"display": "Goh J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1201756", "pmid": "34569067", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome Metagenome"}, {"acc": "PRJNA1201756", "pmid": "37940330", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome Metagenome"}]}, "goh sg": {"display": "Goh SG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA750571", "pmid": "35306253", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Resistome in sewage surviellance"}]}, "goh sh": {"display": "Goh SH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}]}, "gohl d": {"display": "Gohl D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA903921", "pmid": "40469735", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Mycobiome Maturation and Its Determinants during Infancy: A Comparison of Shotgun Met…"}]}, "gois mb": {"display": "Gois MB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "goita d": {"display": "Goita D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "golan n": {"display": "Golan N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA524170", "pmid": "31605691", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistant microbiome underlies antibiotic therapy in pouchitis"}]}, "golan y": {"display": "Golan Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1121316", "pmid": "37060545", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}]}, "goldasich ld": {"display": "Goldasich LD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}]}, "goldberg mb": {"display": "Goldberg MB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "golden a": {"display": "Golden A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912638", "pmid": "37213047", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MICROBIOME IN AGING GUT AND BRAIN (MiaGB) STUDY"}]}, "golden cd": {"display": "Golden CD", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB15371", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJNA231909", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "30661755", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA356102", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA48479", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA504891", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "golden l": {"display": "Golden L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1201756", "pmid": "34569067", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome Metagenome"}]}, "goldenberger d": {"display": "Goldenberger D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35490", "pmid": "32187006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tick-Borne Relapsing Fever caused by Borrelia persica in a Traveler returning from Centra…"}]}, "goldenfeld n": {"display": "Goldenfeld N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA312222", "pmid": "27303377", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genome reconstructions from human gut metagenomes"}]}, "goldfarb dm": {"display": "Goldfarb DM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA980291", "pmid": "38298144", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Targeted Capture of AMR in children in Botswana"}]}, "goldhammer t": {"display": "Goldhammer T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573108", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Sedimentary DNA from Mubwindi Swamp"}]}, "golding gb": {"display": "Golding GB", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA348754", "pmid": "27939314", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}, {"acc": "PRJNA352376", "pmid": "28072390", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA674643", "pmid": "35474894", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Validation of Coronavirus and Sepsis Probe Sets designed using HUBDesign"}]}, "goldsby js": {"display": "Goldsby JS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB2778", "pmid": "22546241", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}, {"acc": "PRJEB2778", "pmid": "33353204", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}]}, "goldstein c": {"display": "Goldstein C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1445880", "pmid": "42010622", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome samples Gastrointestinal Microbiome and Allergic Proctocolitis coho…"}]}, "goldstein l": {"display": "Goldstein L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "goldstein r": {"display": "Goldstein R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39870", "pmid": "33646178", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Oral microbial community profiles in Parkinson’s disease"}]}, "goldwasser f": {"display": "Goldwasser F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "gollins la": {"display": "Gollins LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA870588", "pmid": "36843227", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic of preterm infants with cholestasis"}]}, "golob j": {"display": "Golob J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "38782975", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB46659", "pmid": "41265504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "golob m": {"display": "Golob M", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA339914", "pmid": "36170451", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA343144", "pmid": "36170451", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome Metagenomic assembly"}, {"acc": "PRJNA400259", "pmid": "36170451", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human Milk Microbiome Metagenome"}, {"acc": "PRJNA524170", "pmid": "36170451", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Resistant microbiome underlies antibiotic therapy in pouchitis"}]}, "goltsman ds": {"display": "Goltsman DS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA288562", "pmid": "26283357", "pos": null, "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}]}, "goltsman dsa": {"display": "Goltsman DSA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1086504", "pmid": "38752784", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gardnerella diversity by metagenomic sequencing in the vaginal microbiome"}]}, "golubchik t": {"display": "Golubchik T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "golyshin pn": {"display": "Golyshin PN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA158313", "pmid": "23251564", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Iberian lynx fecal Metagenome"}]}, "golzato d": {"display": "Golzato D", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB6456", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "gomaid r": {"display": "Gomaid R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1297429", "pmid": "40946313", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "16S and RNA sequencing Anopheles gambiae"}]}, "gomathi s": {"display": "Gomathi S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "gomes alc": {"display": "Gomes ALC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "gomes jp": {"display": "Gomes JP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "35750157", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "36131032", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "37696933", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "gomez a": {"display": "Gomez A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA383868", "pmid": "28910633", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "30482830", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "gomez d": {"display": "Gomez D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273078", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Noma oral microbiome raw sequence reads"}]}, "gomez del pulgar em": {"display": "Gómez Del Pulgar EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB25727", "pmid": "31138673", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The impact of AXOS intake in overweight individuals with metabolic syndrome."}]}, "gomez f": {"display": "Gomez F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA259274", "pmid": "25568281", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Wake Forest Vervet Microbiome Project"}]}, "gomez-alvarez p": {"display": "Gomez-Alvarez P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130617", "pmid": "41505541", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}]}, "goncalves a": {"display": "Goncalves A", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "goncalves mj": {"display": "Gonçalves MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "gondarra v": {"display": "Gondarra V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}]}, "gong g": {"display": "Gong G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA624740", "pmid": "33036549", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of yak faecal microbiota"}, {"acc": "PRJNA994670", "pmid": "39242698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial community characterization and molecular resistance monitoring in geriatric int…"}]}, "gong m": {"display": "Gong M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "gong w": {"display": "Gong W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "gonia s": {"display": "Gonia S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1019702", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1198101", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic re-sequencing of human milk"}, {"acc": "PRJNA903921", "pmid": "40469735", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Mycobiome Maturation and Its Determinants during Infancy: A Comparison of Shotgun Met…"}]}, "gonin p": {"display": "Gonin P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "gonsalves tr": {"display": "Gonsalves TR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA946744", "pmid": "39666007", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Homo sapiens metagenomic sequences"}]}, "gonzalez a": {"display": "González A", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}, {"acc": "PRJEB29078", "pmid": "30813950", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA1445932", "pmid": "42669658", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of a complementary feeding intervention on the gut microbiota in 12-18-month- old…"}]}, "gonzalez ce": {"display": "Gonzalez CE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}]}, "gonzalez cg": {"display": "Gonzalez CG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49206", "pmid": "28839072", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}]}, "gonzalez cm": {"display": "Gonzalez CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "gonzalez d": {"display": "Gonzalez D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB110927", "pmid": "39454892", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Durigast_F_prausnitzii_ICI_gastric_adenocarcinoma"}]}, "gonzalez dj": {"display": "Gonzalez DJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB42155", "pmid": "35087228", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}, {"acc": "PRJNA1086674", "pmid": "39138352", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Impact of Oral Feedings on the Preterm Infant Microbiome and Metabolome"}]}, "gonzalez e": {"display": "Gonzalez E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA925842", "pmid": "36750571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut bacteria glycan metabolism - Raw sequence reads"}, {"acc": "PRJNA961698", "pmid": "37610205", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Very Early Life Microbiome and Metabolome Correlates with Primary Vaccination Variability…"}]}, "gonzalez fernandez j": {"display": "González Fernández J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "gonzalez fj": {"display": "Gonzalez FJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "gonzalez l": {"display": "González L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA802048", "pmid": "37882571", "pos": "first", "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Insights into the infant gut microbiome composition after bovine lactoferrin oral adminis…"}]}, "gonzalez s": {"display": "González S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB74322", "pmid": "38870906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}]}, "gonzalez-camuesco a": {"display": "González-Camuesco Á", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "gonzalez-kozlova e": {"display": "Gonzalez-Kozlova E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA946744", "pmid": "39666007", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Homo sapiens metagenomic sequences"}]}, "gonzalez-zorn b": {"display": "González-Zorn B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "38659981", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "goodman al": {"display": "Goodman AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA145005", "pmid": "22030749", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}]}, "goodman lb": {"display": "Goodman LB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA667736", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Milk Metagenome Anomaly Detection Project"}]}, "goodman rn": {"display": "Goodman RN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273078", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Noma oral microbiome raw sequence reads"}]}, "goodrich jk": {"display": "Goodrich JK", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27308", "pmid": "30974084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome metagenome analysis of stool samples from individuals with low and high saliva…"}, {"acc": "PRJNA321218", "pmid": "24137540", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}]}, "goodrum w": {"display": "Goodrum W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA812770", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Lake Erie eDNA HAB samples"}]}, "goodwin kd": {"display": "Goodwin KD", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA679730", "pmid": null, "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2018"}, {"acc": "PRJNA702522", "pmid": null, "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2019"}]}, "goossens h": {"display": "Goossens H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685914", "pmid": "33854066", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiota-based markers predictive of development of Clostridioides difficile infection"}]}, "gopalakrishnan n": {"display": "Gopalakrishnan N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1055141", "pmid": "42336834", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool shallow shotgun sequencing (ANTIBIO)"}]}, "gopalakrishnan v": {"display": "Gopalakrishnan V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "gopel w": {"display": "Göpel W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "gophna u": {"display": "Gophna U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA524170", "pmid": "31605691", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistant microbiome underlies antibiotic therapy in pouchitis"}]}, "gorbach pm": {"display": "Gorbach PM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA836336", "pmid": "36179550", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenome of MSM prior to and following HIV seroconversion"}]}, "gorbunova v": {"display": "Gorbunova V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "gordijn sj": {"display": "Gordijn SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "gordon ji": {"display": "Gordon JI", "group": false, "n_studies": 12, "studies": [{"acc": "PRJEB38446", "pmid": "34001614", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiota (16S rDNA sequencing) and microbiome (shotgun sequencing) data of a pig model…"}, {"acc": "PRJEB45356", "pmid": "38093016", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": "42014682", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB9818", "pmid": "26351661", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "The gut DNA viromes of Malawian twins discordant for severe acute undernutrition"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA1123170", "pmid": "39356745", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}, {"acc": "PRJNA145005", "pmid": "22030749", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}, {"acc": "PRJNA17391", "pmid": "17183312", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut microbiome of lean mouse 1"}, {"acc": "PRJNA17397", "pmid": "17183312", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut microbiome of obese mouse 1"}, {"acc": "PRJNA209131", "pmid": "23976882", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacter…"}, {"acc": "PRJNA32089", "pmid": "19043404", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}, {"acc": "PRJNA39859", "pmid": "20368178", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Analyses of the human gut microbiome after transplantation into germ-free mice"}, {"acc": "PRJNA43253", "pmid": "20363958", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human fecal microbiome"}]}, "gordon pmk": {"display": "Gordon PMK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA377096", "pmid": "31530813", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soda lake innocuated bioreactors"}]}, "gordon-larsen p": {"display": "Gordon-Larsen P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA349463", "pmid": "28915922", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Urban vs. Rural China Microbiome"}]}, "gore m": {"display": "Gore M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1080233", "pmid": "39214237", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Breathing Together severe wheeze and asthma cohort"}]}, "gorfer v": {"display": "Gorfer V", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA287207", "pmid": "26231653", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA339914", "pmid": "28144631", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}]}, "gorkiewicz g": {"display": "Gorkiewicz G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": "29152325", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "gorman h": {"display": "Gorman H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "gorochov g": {"display": "Gorochov G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB7925", "pmid": "25887914", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Quality control of microbiota metagenomics by k-mer analysis with SOLiD sequencing techno…"}]}, "gosalbes mj": {"display": "Gosalbes MJ", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB3085", "pmid": "23236009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}, {"acc": "PRJEB5185", "pmid": "25407519", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysfunctional gut microbiota drives chronic immune activation in HIV-treated individuals"}, {"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "gose m": {"display": "Gose M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1355224", "pmid": "42037384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human metagenomic samples Metagenome"}]}, "gossmann ti": {"display": "Gossmann TI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}]}, "gotherstrom a": {"display": "Götherström A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9783", "pmid": "26351665", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing Chalcolithic human remains from El Portalón, Spain"}]}, "goto k": {"display": "Goto K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "gotoh a": {"display": "Gotoh A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6456", "pmid": "35768643", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "gottardi s": {"display": "Gottardi S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}]}, "gotze jp": {"display": "Gøtze JP", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "gouas d": {"display": "Gouas D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB7925", "pmid": "25887914", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Quality control of microbiota metagenomics by k-mer analysis with SOLiD sequencing techno…"}]}, "gough ek": {"display": "Gough EK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB51728", "pmid": "39341154", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "gougis s": {"display": "Gougis S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4413", "pmid": "23985875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary intervention impact on gut microbial gene richness based on SOLiD next generation…"}]}, "gould tj": {"display": "Gould TJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB29065", "pmid": "37158607", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Daily sampling reveals personalized diet-microbiome associations"}, {"acc": "PRJNA290380", "pmid": "37158607", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "goulenok t": {"display": "Goulenok T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}]}, "goulian m": {"display": "Goulian M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "gourdel m": {"display": "Gourdel M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1104421", "pmid": "39078043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Serum Bile Acids profiles are altered without change of the Gut Microbiota composition fo…"}]}, "goya m": {"display": "Goya M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "goya s": {"display": "Goya S", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1066815", "pmid": "38963827", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human rhinovirus A, B and C in Washington State"}, {"acc": "PRJNA338014", "pmid": "40929366", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA723895", "pmid": "38963827", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Rhinovirus NGS"}, {"acc": "PRJNA907066", "pmid": "36878012", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human respiratory syncytial virus Genome sequencing"}, {"acc": "PRJNA907865", "pmid": "37486790", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhinovirus raw sequence reads"}]}, "gradinaru v": {"display": "Gradinaru V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB17694", "pmid": "27912057", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Di…"}]}, "graf a": {"display": "Graf A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA655381", "pmid": "33329475", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome of drawings by Leonardo Da Vinci"}]}, "graf t": {"display": "Graf T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "graff jn": {"display": "Graff JN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA793907", "pmid": "35908379", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial 16S rRNA gene sequences from fecal samples of prostate cancer patients treated…"}]}, "graham db": {"display": "Graham DB", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA400072", "pmid": "41299229", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA615162", "pmid": "41299229", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA821542", "pmid": "41299229", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut metagenomes from mothers and their infants in the EDIA study"}]}, "graham dw": {"display": "Graham DW", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA807808", "pmid": "37080313", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microalgae-bacteria system for domestic wastewater treatment"}, {"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "graham dy": {"display": "Graham DY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1195142", "pmid": "39282326", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}]}, "graham m": {"display": "Graham M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "graier t": {"display": "Graier T", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1108908", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1108960", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1109334", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}]}, "grais rf": {"display": "Grais RF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA739008", "pmid": "37866373", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Effect of amoxicillin prophylaxis on gut microbiome and resistome for severe acute malnut…"}]}, "gralak t": {"display": "Gralak T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "grall n": {"display": "Grall N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "gram l": {"display": "Gram L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA776087", "pmid": "36973820", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}]}, "granados ac": {"display": "Granados AC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA644725", "pmid": "32958861", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA916952", "pmid": "36758519", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Stanford's Outcomes Research in Kids (STORK) Virome"}]}, "granda ma": {"display": "Granda MA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "granger cl": {"display": "Granger CL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39610", "pmid": "39216480", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}]}, "gransee j": {"display": "Gransee J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "grant mr": {"display": "Grant MR", "group": false, "n_studies": 40, "studies": [{"acc": "PRJEB1220", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB22207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJEB32135", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9576", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA188481", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA221723", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA305507", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA319574", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA322188", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA328899", "pmid": "38172624", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA398089", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA436562", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA485056", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA489090", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA504891", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA510445", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA542703", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA557731", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA633576", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA715601", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA853174", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "granville smith i": {"display": "Granville Smith I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA957107", "pmid": "38291926", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Imrabiome - Rheumatoid project"}]}, "grarup n": {"display": "Grarup N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}]}, "grassin q": {"display": "Grassin Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1004259", "pmid": "38047654", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic and Amplicon-based Nanopore Sequencing of French Human Monkeypox direct from…"}]}, "grau b": {"display": "Grau B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "grau-pujol b": {"display": "Grau-Pujol B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "graupera i": {"display": "Graupera I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}]}, "gravel s": {"display": "Gravel S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "graves b": {"display": "Graves B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "gray cm": {"display": "Gray CM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1143669", "pmid": "39707483", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of neonates exposed to HIV"}, {"acc": "PRJNA526942", "pmid": "33137401", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "uncultured crAssphage strain:ZA | isolates :M186D4, C0521BW15,C0526BW15, C0521BD4, and C0…"}]}, "gray hk": {"display": "Gray HK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912682", "pmid": "38272215", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}]}, "gray mj": {"display": "Gray MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542320", "pmid": "31700190", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacteria Genome sequencing and assembly"}]}, "green j": {"display": "Green J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "green l": {"display": "Green L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644725", "pmid": "32958861", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}]}, "greene m": {"display": "Greene M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "greenfield n": {"display": "Greenfield N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "greening c": {"display": "Greening C", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1130617", "pmid": "41505541", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA1130617", "pmid": null, "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA630822", "pmid": "34732568", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA630822", "pmid": null, "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}, {"acc": "PRJNA832417", "pmid": null, "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "greenleaf wj": {"display": "Greenleaf WJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "greenwood ee": {"display": "Greenwood EE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA706606", "pmid": "36416733", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of Water Chlorination of Children's Gut Microbiomes in Bangladesh"}]}, "greenwood-quaintance ke": {"display": "Greenwood-Quaintance KE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA518922", "pmid": "31577814", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metegenomic sequencing of blood from patients with vector-borne diseases"}]}, "greer cw": {"display": "Greer CW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629517", "pmid": "34145447", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "DFO - beads in situ microcosms Raw sequence reads"}]}, "gregori j": {"display": "Gregori J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "gregoricus n": {"display": "Gregoricus N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "26893429", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "gregory ac": {"display": "Gregory AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA552463", "pmid": "32841606", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "IBD virome Raw sequence reads"}]}, "gregory jk": {"display": "Gregory JK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39474439", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "gregory ke": {"display": "Gregory KE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46337", "pmid": "28274256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}]}, "gregory sm": {"display": "Gregory SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685168", "pmid": "34297922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics suggest diverse mechanisms for response to biologic therapies in IBD"}]}, "greig c": {"display": "Greig C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB72531", "pmid": "38424099", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prebiotic intervention for muscle function and cognition"}]}, "greisen g": {"display": "Greisen G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1009231", "pmid": "39019886", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Born in the twilight of antbiotics"}, {"acc": "PRJNA876384", "pmid": "36620054", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Microbial DNA extraction of high-host content and low biomass samples: optimized protocol…"}]}, "greninger al": {"display": "Greninger AL", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA1066815", "pmid": "38963827", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human rhinovirus A, B and C in Washington State"}, {"acc": "PRJNA171119", "pmid": "20976137", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}, {"acc": "PRJNA338014", "pmid": "26941149", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "27795347", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "27974546", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28100494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28209840", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28254976", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28287142", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28379561", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28711653", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28838146", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28870221", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28935730", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29281620", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29554870", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29564400", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29668933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29898986", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29970463", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30305383", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30383234", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30429252", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30576430", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30674273", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "33827948", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "40929366", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA723895", "pmid": "38963827", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Rhinovirus NGS"}, {"acc": "PRJNA907066", "pmid": "36878012", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human respiratory syncytial virus Genome sequencing"}, {"acc": "PRJNA907865", "pmid": "37486790", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhinovirus raw sequence reads"}]}, "greten tf": {"display": "Greten TF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "gretland valderhaug t": {"display": "Gretland Valderhaug T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31678062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "grettenberger c": {"display": "Grettenberger C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA907387", "pmid": "37014219", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Acid mine drainage metagenomes"}]}, "grice ea": {"display": "Grice EA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46333", "pmid": "22310478", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "grieneisen l": {"display": "Grieneisen L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB29065", "pmid": "37158607", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Daily sampling reveals personalized diet-microbiome associations"}, {"acc": "PRJNA290380", "pmid": "37158607", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "grieshop mp": {"display": "Grieshop MP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1236482", "pmid": "42020750", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Short-term clinical evolution of Enterococcus faecium"}]}, "griffin m": {"display": "Griffin M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35337", "pmid": "11075884", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Analysis of freeze-dried faecal samples collected from individuals between 1974 and 1980"}]}, "griffin p": {"display": "Griffin P", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1156595", "pmid": "39827146", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics: a new frontier for routine pathology testing of gastrointestinal pathogens"}, {"acc": "PRJNA1200893", "pmid": "41809988", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}]}, "griffiths a": {"display": "Griffiths A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}]}, "griffiths be": {"display": "Griffiths BE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA935534", "pmid": "37700351", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Calf microbiome features associated with susceptibility to C.parvum infection"}]}, "grigg cp": {"display": "Grigg CP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701480", "pmid": "34186487", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vaginal seeding in babies born by caesarean section (ECOBABe trial) - shotgun metagenomic…"}]}, "grigg j": {"display": "Grigg J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1080233", "pmid": "39214237", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Breathing Together severe wheeze and asthma cohort"}]}, "grigioni p": {"display": "Grigioni P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA811790", "pmid": "37816747", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial and viral dispersal along the natural water cycle"}]}, "grignard l": {"display": "Grignard L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1355224", "pmid": "42037384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human metagenomic samples Metagenome"}]}, "grigore l": {"display": "Grigore L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA615842", "pmid": "33494335", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}]}, "grimaldi d": {"display": "Grimaldi D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB43581", "pmid": "34295911", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}, {"acc": "PRJEB44898", "pmid": "34295911", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hyperammonemia syndrome following lung transplantation."}]}, "grimaud g": {"display": "Grimaud G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA971895", "pmid": "38310316", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Resismet"}]}, "grimm r": {"display": "Grimm R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}]}, "grimnes jo": {"display": "Grimnes JO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "grinter r": {"display": "Grinter R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA630822", "pmid": "34732568", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA630822", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}]}, "groeger d": {"display": "Groeger D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "37230981", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "groen ak": {"display": "Groen AK", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}, {"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "gromko z": {"display": "Gromko Z", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32631", "pmid": "40328944", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA400628", "pmid": "40328944", "pos": null, "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "Escherichia coli Genome sequencing and assembly"}]}, "gromov a": {"display": "Gromov A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "gromowski t": {"display": "Gromowski T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "grompone g": {"display": "Grompone G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB100868", "pmid": "42644416", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "PREVENT 1: Gut microbiota development and health in early life"}]}, "gronkiewicz s": {"display": "Gronkiewicz S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "gronwald w": {"display": "Gronwald W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}]}, "grossart hp": {"display": "Grossart HP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884026", "pmid": "36724220", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic investigation of lake Issyk-Kul, Kyrgyzstan"}]}, "groussin m": {"display": "Groussin M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}]}, "grubaugh nd": {"display": "Grubaugh ND", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "grundhoff a": {"display": "Grundhoff A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB15376", "pmid": "29067007", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome, metatranscriptome and exo-proteome analyses identify molecular keys and main…"}, {"acc": "PRJNA240141", "pmid": "25208077", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "grupe g": {"display": "Grupe G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "grutzke j": {"display": "Grützke J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "38659981", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "grysan p": {"display": "Grysan P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "26505828", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "gschwind r": {"display": "Gschwind R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1262354", "pmid": "41603547", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMBARK - Establishing a Monitoring Baseline for Antimicrobial Resistance in Key environme…"}]}, "gu w": {"display": "Gu W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "gu x": {"display": "Gu X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522027", "pmid": "35087906", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Taisui metagenomic sequencing"}]}, "gual-grau a": {"display": "Gual-Grau A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44042", "pmid": "34252569", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Kefir ameliorates specific microbiota-gut-brain axis impairments in a mouse model relevan…"}]}, "guan c": {"display": "Guan C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA558989", "pmid": "32004459", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomics of Staphylococcus epidermidis and contextual metagenome"}]}, "guan h": {"display": "Guan H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB108038", "pmid": "41834868", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Jaundice and the Infant Gut Microbiome: An Integrated Shotgun Metagenomics and B…"}]}, "guan j": {"display": "Guan J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28209840", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29554870", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "guan ll": {"display": "Guan LL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}]}, "guan q": {"display": "Guan Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38089", "pmid": "32091380", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics study of an Imported Multidrug-Resistant Mycobacterium leprae, Saudi Arabia,…"}]}, "guan tp": {"display": "Guan TP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA421859", "pmid": "29886344", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sichuan takin Metagenome"}]}, "guan y": {"display": "Guan Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "guarner f": {"display": "Guarner F", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA851554", "pmid": "34938418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomes of the gut microbiota of CD patients that required resection from a Belgian c…"}]}, "gueant jl": {"display": "Guéant JL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA379120", "pmid": "39739091", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA595749", "pmid": "39739091", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}]}, "gueimonde m": {"display": "Gueimonde M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6972", "pmid": "25491920", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The microbial colonization of the intestine during the first monthsof life constitutes th…"}]}, "guernier-cambert v": {"display": "Guernier-Cambert V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36405", "pmid": "34603219", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Study of the bacterial resistome in people and animals from Australia"}]}, "guevara ek": {"display": "Guevara EK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "gui j": {"display": "Gui J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "35847562", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "36632065", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "guidet b": {"display": "Guidet B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80549", "pmid": "41196055", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterisation of the forehead and armpit skin microbiome of healthy individuals using…"}]}, "guignard c": {"display": "Guignard C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "26505828", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "guija-poma e": {"display": "Guija-Poma E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}]}, "guilaine j": {"display": "Guilaine J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41240", "pmid": "33434506", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Heterogeneous hunter-gatherer and steppe-related ancestries in Late Neolithic and Bell Be…"}]}, "guillen s": {"display": "Guillén S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "guillou l": {"display": "Guillou L", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "guilly s": {"display": "Guilly S", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}, {"acc": "PRJEB43454", "pmid": "35151268", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Long-term diosmectite use does not alter the gut microbiota in adults with chronic diarrh…"}, {"acc": "PRJEB43611", "pmid": "35140493", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in gut microbiota during balneotherapy"}, {"acc": "PRJEB48663", "pmid": "35311446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Increasing the diversity of dietary fibres in a daily-consumed bread modifies gut microbi…"}]}, "guimaraes ar": {"display": "Guimarães AR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "guimaraes ma": {"display": "Guimarães MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "guinot f": {"display": "Guinot F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA478488", "pmid": "32591010", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Chinese human skin metagenome"}]}, "guitor ak": {"display": "Guitor AK", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB21259", "pmid": null, "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}, {"acc": "PRJNA805248", "pmid": "36008821", "pos": "first", "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Targeted Capture of AMR in Preterm infants after probiotic exposure"}, {"acc": "PRJNA980291", "pmid": "38298144", "pos": "first", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Targeted Capture of AMR in children in Botswana"}]}, "guittar j": {"display": "Guittar J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "30710083", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "guizani-tabbane l": {"display": "Guizani-Tabbane L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762668", "pmid": "35547149", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal and comparative analysis of Tunisian newborns gut microbiota according to de…"}]}, "gullert s": {"display": "Güllert S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA240141", "pmid": "25208077", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "gulseth hl": {"display": "Gulseth HL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}, {"acc": "PRJEB59861", "pmid": "31678062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "gumbi w": {"display": "Gumbi W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "gunathilake m": {"display": "Gunathilake M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "guner sn": {"display": "Guner SN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "gungor c": {"display": "Güngör C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "gunsalus kc": {"display": "Gunsalus KC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130109", "pmid": "39081889", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome study"}]}, "gunther s": {"display": "Günther S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "gunther t": {"display": "Günther T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9783", "pmid": "26351665", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing Chalcolithic human remains from El Portalón, Spain"}]}, "guo c": {"display": "Guo C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}]}, "guo g": {"display": "Guo G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA776087", "pmid": "36973820", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}, {"acc": "PRJNA905328", "pmid": "37904586", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut microbes sequencing"}]}, "guo h": {"display": "Guo H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA681411", "pmid": "34230529", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Clinical sample from VZV patients"}]}, "guo j": {"display": "Guo J", "group": false, "n_studies": 4, "studies": [{"acc": "PRJDB38192", "pmid": "37674580", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Utility of clinical metagenomics in diagnosing malignancies in a cohort of patients with…"}, {"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}, {"acc": "PRJNA290380", "pmid": "41796297", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA436359", "pmid": "41796297", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbial factors implicated in disease progression and treatment response in pediatr…"}]}, "guo m": {"display": "Guo M", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1029896", "pmid": "39227902", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA477424", "pmid": "30619206", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "panda gut metagenome raw sequence reads Raw sequence reads"}, {"acc": "PRJNA660305", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism, up-regulated colon inf…"}, {"acc": "PRJNA660966", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism and up-regulated colon…"}]}, "guo p": {"display": "Guo P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1428929", "pmid": "42022809", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota and Metabolome Signatures in Preterm Infants with High versus Low Risk for…"}]}, "guo q": {"display": "Guo Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA474601", "pmid": "29988510", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Loss of intestinal microbes in cholecystectomy patients"}]}, "guo r": {"display": "Guo R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA433058", "pmid": "37854337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "guo s": {"display": "Guo S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1390667", "pmid": "42071227", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal sample"}, {"acc": "PRJNA719915", "pmid": "34465850", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tumor microbiome contributes to an aggressive phenotype in the basal-like subtype of panc…"}]}, "guo w": {"display": "Guo W", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1052964", "pmid": "40860434", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA719915", "pmid": "34465850", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tumor microbiome contributes to an aggressive phenotype in the basal-like subtype of panc…"}, {"acc": "PRJNA876377", "pmid": "37007478", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soil microbiome of grassland bulk soil Metagenome"}]}, "guo y": {"display": "Guo Y", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB108038", "pmid": "41834868", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Jaundice and the Infant Gut Microbiome: An Integrated Shotgun Metagenomics and B…"}, {"acc": "PRJEB26810", "pmid": "40347294", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}, {"acc": "PRJNA1402009", "pmid": "41726387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "faeces of British shorthair Raw sequence reads"}, {"acc": "PRJNA312041", "pmid": "27226242", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human fecal raw sequence reads"}, {"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}, {"acc": "PRJNA715658", "pmid": "40266232", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Genome-resolved metagenomics of the chicken gut microbiome"}, {"acc": "PRJNA735411", "pmid": "40266232", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Microbial Ecology of sea lion gut microbiome at Comau Fjord, Northern Patagonia (42 S). R…"}]}, "guo z": {"display": "Guo Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15111", "pmid": "26932197", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}]}, "gupta ak": {"display": "Gupta AK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA607004", "pmid": "30264164", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacillus coagulans LBSC Impact on Gut microbiota"}, {"acc": "PRJNA607004", "pmid": "31964505", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacillus coagulans LBSC Impact on Gut microbiota"}]}, "gupta b": {"display": "Gupta B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019500", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}]}, "gupta cl": {"display": "Gupta CL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA598014", "pmid": "34454634", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Broiler Chicken Cloacal and Litter Meta-genomic Samples"}, {"acc": "PRJNA661164", "pmid": "33904706", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Treated Wastewater and Soil Meta-genomic Samples"}]}, "gupta p": {"display": "Gupta P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "gupta sk": {"display": "Gupta SK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA506137", "pmid": "29858829", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "wastewater Metagenome"}]}, "gurel f": {"display": "Gürel F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22200", "pmid": "31957879", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenomic Analysis of Microbial Composition of Kombucha"}]}, "gurnari c": {"display": "Gurnari C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746290", "pmid": "35210415", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Circulating Microbiome in Myeloid Malignancy"}]}, "guron gkp": {"display": "Guron GKP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA506850", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "USDA Developing Computational Tools To Identify Critical Control Points For Mitigating Th…"}]}, "gurreri e": {"display": "Gurreri E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "gurruwiwi g": {"display": "Gurruwiwi G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}]}, "guruge j": {"display": "Guruge J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1067813", "pmid": "39731916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C. difficile-associated mouse and human fecal metagenomes"}]}, "gurven md": {"display": "Gurven MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA290380", "pmid": "32728114", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "gutierrez c": {"display": "Gutiérrez C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "gutierrez mw": {"display": "Gutierrez MW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1055141", "pmid": "42336834", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool shallow shotgun sequencing (ANTIBIO)"}]}, "gutierrez rl": {"display": "Gutiérrez RL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945408", "pmid": "38085102", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prev…"}]}, "gutmann f": {"display": "Gutmann F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}]}, "gutzki f": {"display": "Gutzki F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51501", "pmid": "36416760", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Predicting butyrate- and propionate-forming bacteria of gut microbiota from sequencing da…"}, {"acc": "PRJEB51501", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Predicting butyrate- and propionate-forming bacteria of gut microbiota from sequencing da…"}]}, "guyard c": {"display": "Guyard C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "20976137", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "guyton k": {"display": "Guyton K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14474", "pmid": "28539477", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}]}, "gweon hs": {"display": "Gweon HS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "34609275", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "gzyl ke": {"display": "Gzyl KE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA779404", "pmid": "39584815", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Florfenicol treatment and the piglet gut microbiome"}]}, "haaland k": {"display": "Haaland K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1009231", "pmid": "39019886", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Born in the twilight of antbiotics"}, {"acc": "PRJNA876384", "pmid": "36620054", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Microbial DNA extraction of high-host content and low biomass samples: optimized protocol…"}]}, "haas jd": {"display": "Haas JD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1445932", "pmid": "42669658", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of a complementary feeding intervention on the gut microbiota in 12-18-month- old…"}]}, "haber m": {"display": "Haber M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA515489", "pmid": "32840024", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genomic collection of symbionts associated with Petrosia ficiformis"}, {"acc": "PRJNA515489", "pmid": "33537022", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genomic collection of symbionts associated with Petrosia ficiformis"}]}, "haberman y": {"display": "Haberman Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}]}, "habermann n": {"display": "Habermann N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}]}, "habier j": {"display": "Habier J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA379120", "pmid": "30504906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA489090", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA595749", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}]}, "habisch h": {"display": "Habisch H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "hablutzel pi": {"display": "Hablützel PI", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "hackenberger d": {"display": "Hackenberger D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA674643", "pmid": "35474894", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Validation of Coronavirus and Sepsis Probe Sets designed using HUBDesign"}]}, "hacker jk": {"display": "Hacker JK", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1261853", "pmid": "38816345", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia sp. CA6269 genome sequencing from clinical and environmental samples"}, {"acc": "PRJNA322324", "pmid": "28818890", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "hackett j": {"display": "Hackett J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}, {"acc": "PRJNA171119", "pmid": "20976137", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "hadermann a": {"display": "Hadermann A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1088476", "pmid": "40321713", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Cameroonian blackflies (Diptera: Simuliidae) harbour a plethora of (RNA) viruses"}]}, "haen r": {"display": "Haen R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "haertel a": {"display": "Haertel A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA546004", "pmid": "31451108", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Maturation of the infant rhesus macaque (Macaca mulatta) gut microbiome and its role in t…"}, {"acc": "PRJNA729051", "pmid": "34158595", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Growth faltering regardless of chronic diarrhea is associated with mucosal immune dysfunc…"}]}, "haertel aj": {"display": "Haertel AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB5224", "pmid": "38182754", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}]}, "haferlach t": {"display": "Haferlach T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746290", "pmid": "35210415", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Circulating Microbiome in Myeloid Malignancy"}]}, "hafifah cn": {"display": "Hafifah CN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1077459", "pmid": "38883202", "pos": "last", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Trio Whole Exome Sequencing of Rare Disease"}]}, "hagan r": {"display": "Hagan R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}]}, "hagedoorn m": {"display": "Hagedoorn M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "hagele b": {"display": "Hägele B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40662", "pmid": "34675897", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Deep (Meta)genomics and (Meta)transcriptome Analyses of Fungal and Bacteria Consortia Fro…"}]}, "hager kr": {"display": "Hager KR", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA285502", "pmid": "26288277", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiota transplantation (FMT) for ulcerative colitis"}, {"acc": "PRJNA510445", "pmid": "31959989", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA510445", "pmid": "34525965", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA516442", "pmid": "30784601", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Depletion of human DNA from complex clinical samples for metagenomic sequencing"}]}, "haggerty t": {"display": "Haggerty T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA916952", "pmid": "36758519", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Stanford's Outcomes Research in Kids (STORK) Virome"}]}, "haggerty td": {"display": "Haggerty TD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644725", "pmid": "32958861", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}]}, "hagopian wa": {"display": "Hagopian WA", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA268964", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA392180", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA485056", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA497734", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "hahn a": {"display": "Hahn A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1115039", "pmid": "39673707", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary selective effects manifest in the human gut microbiota from species composition t…"}]}, "haid v": {"display": "Haid V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB77729", "pmid": "39714161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "First-Year Dynamics of the Microbiome in Infants’ Oral and Gastrointestinal Systems"}]}, "haimet f": {"display": "Haimet F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}]}, "haiminen n": {"display": "Haiminen N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA667736", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Milk Metagenome Anomaly Detection Project"}]}, "haines a": {"display": "Haines A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35337", "pmid": "11075884", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Analysis of freeze-dried faecal samples collected from individuals between 1974 and 1980"}]}, "hair ab": {"display": "Hair AB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA870588", "pmid": "36843227", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic of preterm infants with cholestasis"}]}, "haiser hj": {"display": "Haiser HJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "haiss a": {"display": "Haiß A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "hajdu t": {"display": "Hajdu T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "hajjar rj": {"display": "Hajjar RJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA679286", "pmid": "34320399", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Global genome analyses reveal a vast and dynamic anellovirus landscape within the human v…"}]}, "hajjiri z": {"display": "Hajjiri Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28510", "pmid": "27633952", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diverse virome in kidney transplant patients contains multiple viral subtypes with dist…"}]}, "hakim ja": {"display": "Hakim JA", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB32631", "pmid": "32431894", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA288562", "pmid": "32431894", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}, {"acc": "PRJNA593263", "pmid": "32431894", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Feces metagenome"}]}, "hakola l": {"display": "Hakola L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821542", "pmid": "39551356", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut metagenomes from mothers and their infants in the EDIA study"}]}, "halasa nb": {"display": "Halasa NB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "hald t": {"display": "Hald T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73590", "pmid": "37111504", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}, {"acc": "PRJEB73590", "pmid": "38003822", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}, {"acc": "PRJEB73590", "pmid": "38235427", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}]}, "halden ru": {"display": "Halden RU", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1070654", "pmid": "38712930", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Seasonality of Respiratory, Enteric and Urinary Viruses in Wastewater"}, {"acc": "PRJNA1090887", "pmid": "39053521", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human adenovirus outbreak at a university campus monitored by wastewater and clinical sur…"}]}, "haldenby s": {"display": "Haldenby S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA935534", "pmid": "37700351", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Calf microbiome features associated with susceptibility to C.parvum infection"}]}, "halder r": {"display": "Halder R", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA379120", "pmid": "30504906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA489090", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA595749", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}]}, "hale vl": {"display": "Hale VL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA397219", "pmid": "29704665", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "halim tba": {"display": "Halim TBA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1055141", "pmid": "42336834", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool shallow shotgun sequencing (ANTIBIO)"}]}, "halkias j": {"display": "Halkias J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "hall ab": {"display": "Hall AB", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA275349", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA48479", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA559861", "pmid": "32544460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cholesterol Metabolism by Uncultured Human Gut Bacteria Influences Host Cholesterol Level."}]}, "hall b": {"display": "Hall B", "group": false, "n_studies": 40, "studies": [{"acc": "PRJEB1220", "pmid": "38172624", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB22207", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJEB32135", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9576", "pmid": "38172624", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA188481", "pmid": "38172624", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA221723", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38172624", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA305507", "pmid": "38172624", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA319574", "pmid": "38172624", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA322188", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA328899", "pmid": "38172624", "pos": "first", "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38172624", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA398089", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA436562", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA485056", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA489090", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA504891", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "41118772", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA510445", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA542703", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "38172624", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA557731", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA633576", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA715601", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA853174", "pmid": "38172624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "hall l": {"display": "Hall L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "hall lj": {"display": "Hall LJ", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB14935", "pmid": "29096601", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Term and preterm shotgun samples"}, {"acc": "PRJEB22207", "pmid": "31844297", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJEB37883", "pmid": "36906612", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJNA1191223", "pmid": "40813371", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of early life antibiotic and probiotic treatment on gut microbiome and resistome o…"}, {"acc": "PRJNA1230889", "pmid": "42020426", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}, {"acc": "PRJNA1230889", "pmid": null, "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}, {"acc": "PRJNA518912", "pmid": "37231089", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA63661", "pmid": "32436839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "hall m": {"display": "Hall M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1130617", "pmid": "41505541", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA202388", "pmid": "25028422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "hall mw": {"display": "Hall MW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202388", "pmid": "24911009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "hall n": {"display": "Hall N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8179", "pmid": "25586220", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Synthetic community metagenomes study"}]}, "hall-moore c": {"display": "Hall-Moore C", "group": false, "n_studies": 8, "studies": [{"acc": "PRJNA1060349", "pmid": "40175737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Weaning accelerates and transforms within-host adaptation in the infant gut microbiome"}, {"acc": "PRJNA1148144", "pmid": "40128855", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Biosignatures of late-onset extraintestinal bacterial infections"}, {"acc": "PRJNA301903", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA701982", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic-driven intestinal dysbiosis in paediatric SBS alters microbiome functions and…"}, {"acc": "PRJNA884103", "pmid": "37134153", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}, {"acc": "PRJNA911205", "pmid": "37726348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Psychosocial adversity experienced in utero and early life is associated with variation i…"}]}, "hallen a": {"display": "Hallen A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB127029", "pmid": "26552345", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abun…"}]}, "haller m": {"display": "Haller M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41353", "pmid": "33997698", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Mass burial genomics reveals outbreak of enteric paratyphoid fever in the Late Medieval t…"}]}, "haller-caskie m": {"display": "Haller-Caskie M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49648", "pmid": "39155318", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Neolithic Yersinia pestis infections in humans and a dog"}]}, "halliday g": {"display": "Halliday G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "hallin m": {"display": "Hallin M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB43581", "pmid": "34295911", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}, {"acc": "PRJEB44898", "pmid": "34295911", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hyperammonemia syndrome following lung transplantation."}]}, "halloran me": {"display": "Halloran ME", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "hallows jl": {"display": "Hallows JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}]}, "halpern z": {"display": "Halpern Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "halsey tm": {"display": "Halsey TM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "halvorsen e": {"display": "Halvorsen E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "halwachs b": {"display": "Halwachs B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA63661", "pmid": "41250602", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "ham sl": {"display": "Ham SL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA798191", "pmid": "36038938", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bamboo microbiota study in infants"}]}, "hamad i": {"display": "Hamad I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}]}, "hamadani j": {"display": "Hamadani J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39367018", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "hamady m": {"display": "Hamady M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA32089", "pmid": "19043404", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}]}, "hamaguchi y": {"display": "Hamaguchi Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB15907", "pmid": "37621086", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alpha-HPV-targeted sequence for cervical swab specimens"}]}, "haman kh": {"display": "Haman KH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28870221", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "hamchand r": {"display": "Hamchand R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA390646", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA633576", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}]}, "hamer dh": {"display": "Hamer DH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "hamilton al": {"display": "Hamilton AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA715634", "pmid": "34035441", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Novel Strain Level Resolution of Crohns Disease Mucosa-Associated Microbiota via an ex vi…"}]}, "hamilton n": {"display": "Hamilton N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "hamilton wd": {"display": "Hamilton WD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "hammar u": {"display": "Hammar U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "hammarstrom l": {"display": "Hammarström L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633381", "pmid": "33662387", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "IgA deficiency microbiota"}]}, "hammer r": {"display": "Hammer R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA683873", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Severe acute respiratory syndrome coronavirus 2 Genome sequencing"}]}, "hamsten m": {"display": "Hamsten M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37731", "pmid": "33208514", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}]}, "han a": {"display": "Han A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156457", "pmid": "39731681", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acanthamoeba sequencing"}]}, "han b": {"display": "Han B", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "han d": {"display": "Han D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA506137", "pmid": "29858829", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "wastewater Metagenome"}, {"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "han gs": {"display": "Han GS", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB6456", "pmid": "36779183", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA422434", "pmid": "36779183", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA48479", "pmid": "36779183", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "han hs": {"display": "Han HS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11419", "pmid": "38188664", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}]}, "han j": {"display": "Han J", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1111475", "pmid": "39813050", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics in patients with central centrifugal cicatricial alopecia (CCCA)"}, {"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}, {"acc": "PRJNA1369410", "pmid": "42242497", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics sequencing from patients with CD4 lymphopenia"}, {"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "han jl": {"display": "Han JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746430", "pmid": "35676509", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "camel rumen metagenome Raw sequence reads"}]}, "han l": {"display": "Han L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1002114", "pmid": "37823665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Direct prediction of carbapenem-resistance for Pseudomonas aeruginosa by whole genome seq…"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "han p": {"display": "Han P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1002114", "pmid": "37823665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Direct prediction of carbapenem-resistance for Pseudomonas aeruginosa by whole genome seq…"}]}, "han xy": {"display": "Han XY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "han y": {"display": "Han Y", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB40662", "pmid": "34675897", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Deep (Meta)genomics and (Meta)transcriptome Analyses of Fungal and Bacteria Consortia Fro…"}, {"acc": "PRJNA240141", "pmid": "36284144", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Elephant feces Metagenome"}, {"acc": "PRJNA779578", "pmid": "36503572", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Cervus nippon Raw sequence reads"}]}, "han z": {"display": "Han Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1218236", "pmid": "40144527", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Analysis of Intragastric Administration of Donkey Milk on Mouse Immunity Using Gut Microb…"}]}, "hanachi m": {"display": "Hanachi M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762668", "pmid": "35547149", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal and comparative analysis of Tunisian newborns gut microbiota according to de…"}]}, "hancock sj": {"display": "Hancock SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893826", "pmid": "38622998", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Culture-independent long read metagenomic diagnostics for genomic surveillance and infect…"}]}, "handley km": {"display": "Handley KM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB14474", "pmid": "28539477", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}, {"acc": "PRJNA515489", "pmid": "31086829", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genomic collection of symbionts associated with Petrosia ficiformis"}, {"acc": "PRJNA515489", "pmid": "32840024", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genomic collection of symbionts associated with Petrosia ficiformis"}, {"acc": "PRJNA515489", "pmid": "33537022", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genomic collection of symbionts associated with Petrosia ficiformis"}]}, "handley sa": {"display": "Handley SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB7772", "pmid": "25619688", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}]}, "handschuh l": {"display": "Handschuh L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA749919", "pmid": "35589762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An optimized approach to the metagenomic population studies: from sample donation to comm…"}]}, "hang j": {"display": "Hang J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA683873", "pmid": null, "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Severe acute respiratory syndrome coronavirus 2 Genome sequencing"}]}, "hang'ombe bm": {"display": "Hang'ombe BM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB3158", "pmid": "25381053", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shrew fecal metagenome"}]}, "hanhineva k": {"display": "Hanhineva K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA728908", "pmid": "35675435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of baseline individuals in a 4.6-year non-alcoholic fatty liver disease pr…"}]}, "hanieh s": {"display": "Hanieh S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}]}, "hankemeijer t": {"display": "Hankemeijer T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "hanley-cook gt": {"display": "Hanley-Cook GT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1113165", "pmid": "40102379", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}]}, "hannibal rl": {"display": "Hannibal RL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "36220843", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": "37938270", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "hansbro pm": {"display": "Hansbro PM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA313232", "pmid": "27388460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteroidales group S24-7 population genome recovery"}, {"acc": "PRJNA562766", "pmid": "33208745", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}]}, "hansen aj": {"display": "Hansen AJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB12636", "pmid": "26818667", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of P. acnes levels in NGS data from cancer samples"}, {"acc": "PRJNA789782", "pmid": "34970712", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of bat coronaviruses from Eswatini"}]}, "hansen f": {"display": "Hansen F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "hansen m": {"display": "Hansen M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64334", "pmid": "38294254", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Multi-omics of host-gut microbiota interactions in healthy and parasitized farmed Atlanti…"}]}, "hansen s": {"display": "Hansen S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52147", "pmid": "35440708", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Association Between Milk Feedings in the Preterm Population, the Microbiome and Risk…"}]}, "hansen sb": {"display": "Hansen SB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64334", "pmid": "38294254", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Multi-omics of host-gut microbiota interactions in healthy and parasitized farmed Atlanti…"}]}, "hansen t": {"display": "Hansen T", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB51635", "pmid": "36604748", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "hansen ta": {"display": "Hansen TA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB12636", "pmid": "26818667", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of P. acnes levels in NGS data from cancer samples"}, {"acc": "PRJNA789782", "pmid": "34970712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of bat coronaviruses from Eswatini"}]}, "hansen th": {"display": "Hansen TH", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB51635", "pmid": "36604748", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}, {"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}]}, "hansen za": {"display": "Hansen ZA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA660443", "pmid": "34785751", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the human gut during enteric infection"}]}, "hanski e": {"display": "Hanski E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52774", "pmid": "31253623", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}]}, "hanson dj": {"display": "Hanson DJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29554870", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "hansson mg": {"display": "Hansson MG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "hao f": {"display": "Hao F", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "hao j": {"display": "Hao J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961946", "pmid": "37386612", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Human Genome sequencing and assembly"}]}, "hao ly": {"display": "Hao LY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1463324", "pmid": "41342324", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "VE202 phase 1 stool metagenomes"}]}, "happi ct": {"display": "Happi CT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "haque r": {"display": "Haque R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "hara s": {"display": "Hara S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10711", "pmid": "34090359", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics for pathogens detection from patients with fever of unknown origin"}]}, "hara t": {"display": "Hara T", "group": false, "n_studies": 11, "studies": [{"acc": "PRJDB4176", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB17632", "pmid": "37188713", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Subspecies in the global human gut microbiome"}, {"acc": "PRJEB6070", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6456", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB7774", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJNA217052", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Fiji COMP"}, {"acc": "PRJNA268964", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA290380", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA485056", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}]}, "harari o": {"display": "Harari O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "harbarth s": {"display": "Harbarth S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB33794", "pmid": "32185143", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Changes in Microbiota Profiles After Prolonged Frozen Storage of Stool Suspensions"}, {"acc": "PRJEB35816", "pmid": "32585945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota of carriers of extended-spectrum beta-lactamase or carbapenemase-producing…"}, {"acc": "PRJEB44214", "pmid": "34983654", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in the gut microbiome in colon cancer surgery patients: a pilot observational stu…"}]}, "harbidge j": {"display": "Harbidge J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "harcourt k": {"display": "Harcourt K", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA400115", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}, {"acc": "PRJNA806984", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}, {"acc": "PRJNA994433", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Variability of Bifidobacterium Species in the Infant Gut is Independent of M…"}]}, "hardy r": {"display": "Hardy R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA558989", "pmid": "32004459", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomics of Staphylococcus epidermidis and contextual metagenome"}]}, "hares mf": {"display": "Hares MF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA935534", "pmid": "37700351", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Calf microbiome features associated with susceptibility to C.parvum infection"}]}, "haribabu b": {"display": "Haribabu B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA899808", "pmid": "36543914", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Role of the gut microbiome in lung fibrosis"}]}, "harigua-souiai e": {"display": "Harigua-Souiai E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762668", "pmid": "35547149", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal and comparative analysis of Tunisian newborns gut microbiota according to de…"}]}, "hariri s": {"display": "Hariri S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA213036", "pmid": "24072871", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Cronobacter sakazakii NCIMB 8272 Genome sequencing and assembly"}]}, "harkins cp": {"display": "Harkins CP", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}, {"acc": "PRJNA46333", "pmid": "37054678", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA604820", "pmid": "34936382", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin metagenome from antibiotics treated healthy human subjects"}, {"acc": "PRJNA642893", "pmid": "33212154", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin microbiome from cutaneous T-cell lymphoma patients and healthy volunteers"}]}, "harkins dm": {"display": "Harkins DM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA383868", "pmid": "28910633", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "30482830", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "32409670", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}]}, "harkins tt": {"display": "Harkins TT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "harkonen t": {"display": "Härkönen T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "36195095", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "harms ac": {"display": "Harms AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "harmsen hjm": {"display": "Harmsen HJM", "group": false, "n_studies": 10, "studies": [{"acc": "PRJDB4176", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1690", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB21528", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB22893", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome impacts response to PD-1 immunotherapy in melanoma patients"}, {"acc": "PRJEB27005", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB39223", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB44737", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJNA231909", "pmid": "39885121", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "39885121", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA48479", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "harouna n": {"display": "Harouna N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "harpenas e": {"display": "Harpenas E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1312123", "pmid": "41203618", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Development of the preterm infant gut and gastric residuals microbiome"}]}, "harridge sdr": {"display": "Harridge SDR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB72531", "pmid": "38424099", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prebiotic intervention for muscle function and cognition"}]}, "harris al": {"display": "Harris AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "harris b": {"display": "Harris B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188190", "pmid": "37113001", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two…"}]}, "harris cc": {"display": "Harris CC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "harris h": {"display": "Harris H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA722408", "pmid": "36076058", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}, {"acc": "PRJNA722408", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}]}, "harris pna": {"display": "Harris PNA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893826", "pmid": "38622998", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Culture-independent long read metagenomic diagnostics for genomic surveillance and infect…"}]}, "harris s": {"display": "Harris S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA722408", "pmid": "36076058", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}, {"acc": "PRJNA722408", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}]}, "harris ta": {"display": "Harris TA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "harris vc": {"display": "Harris VC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "41986657", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "harrison cj": {"display": "Harrison CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28369502", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "harrison jj": {"display": "Harrison JJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14718", "pmid": "28667104", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Study of the changes in the metagenome of the groundwater community at Little Forest Lega…"}]}, "harrison lc": {"display": "Harrison LC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}, {"acc": "PRJNA1081952", "pmid": "39143045", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "harrison oj": {"display": "Harrison OJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46333", "pmid": "28679656", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "harrison p": {"display": "Harrison P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "harriss lr": {"display": "Harriss LR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA503909", "pmid": "33074097", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}]}, "harsono iw": {"display": "Harsono IW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1077459", "pmid": "38883202", "pos": "first", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Trio Whole Exome Sequencing of Rare Disease"}]}, "hart d": {"display": "Hart D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB72531", "pmid": "38424099", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prebiotic intervention for muscle function and cognition"}]}, "hart jl": {"display": "Hart JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "hartel c": {"display": "Härtel C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "hartman e": {"display": "Hartman E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA872399", "pmid": "36474348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "hartman jh": {"display": "Hartman JH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46777", "pmid": "25836986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Ulcerative Colitis."}]}, "hartman sj": {"display": "Hartman SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1123170", "pmid": "39356745", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}]}, "hartono w": {"display": "Hartono W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "36220843", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": "37938270", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "hartstra av": {"display": "Hartstra AV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "harvig l": {"display": "Harvig L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "haryono mas": {"display": "Haryono MAS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB17097", "pmid": "40226095", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "St Johns Island Resistome project"}]}, "hasan mi": {"display": "Hasan MI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39367018", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "hasan n": {"display": "Hasan N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "hasan na": {"display": "Hasan NA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA417283", "pmid": "29988506", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "hasegawa k": {"display": "Hasegawa K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB29078", "pmid": "37874156", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA296814", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA322188", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}]}, "hasegawa n": {"display": "Hasegawa N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "hasegawa y": {"display": "Hasegawa Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB15907", "pmid": "37621086", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alpha-HPV-targeted sequence for cervical swab specimens"}, {"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "haseljic e": {"display": "Haseljic E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "hashimoto d": {"display": "Hashimoto D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "haskell j": {"display": "Haskell J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130617", "pmid": "41505541", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}]}, "haslam db": {"display": "Haslam DB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1364313", "pmid": "35794664", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Antibiotic impact on preterm infant microbiome maturation"}]}, "hasman h": {"display": "Hasman H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12466", "pmid": "26161690", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Meta-genomic analysis of toilet waste from long distance flights"}]}, "hassall a": {"display": "Hassall A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA704056", "pmid": "33672258", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Tracking reservoirs of antimicrobial resistance genes in microbiota using metagenomic Hi-C"}]}, "hassen jy": {"display": "Hassen JY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "33829128", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "hasserjian r": {"display": "Hasserjian R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "haston jc": {"display": "Haston JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156457", "pmid": "39731681", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acanthamoeba sequencing"}]}, "hatt jk": {"display": "Hatt JK", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA486009", "pmid": "33452027", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Genome diversity of pathogenic Escherichia coli in Ecuador"}, {"acc": "PRJNA747761", "pmid": "37938667", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Atlanta, USA and Maputo, Mozambique Children gut microbiome Metagenome"}]}, "hattori m": {"display": "Hattori M", "group": false, "n_studies": 5, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}, {"acc": "PRJDB8956", "pmid": "34586399", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An efficient and accurate reconstruction of the full-length phage genomes by chimera-free…"}, {"acc": "PRJNA362284", "pmid": "31455406", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}, {"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "hau p": {"display": "Hau P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "hauser j": {"display": "Hauser J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63183", "pmid": "37457984", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Interactions Between Bifidobacterium and Bacteroides and Human Milk Oligosaccharides and…"}]}, "hausmann b": {"display": "Hausmann B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1033532", "pmid": "38014294", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Evaluating the impact of pharmaceuticals on the human gut microbiome Raw sequence reads"}, {"acc": "PRJNA1112760", "pmid": "39679616", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic signatures of early life brain damage"}]}, "havelaar a": {"display": "Havelaar A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "33042218", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "havelaar ah": {"display": "Havelaar AH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "32351922", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "33553097", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "33829128", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "41185061", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "havranek j": {"display": "Havránek J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA749919", "pmid": "35589762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An optimized approach to the metagenomic population studies: from sample donation to comm…"}]}, "havyarimana e": {"display": "Havyarimana E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA526942", "pmid": "33137401", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "uncultured crAssphage strain:ZA | isolates :M186D4, C0521BW15,C0526BW15, C0521BD4, and C0…"}]}, "haw mp": {"display": "Haw MP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1261853", "pmid": "38816345", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia sp. CA6269 genome sequencing from clinical and environmental samples"}]}, "hawk et": {"display": "Hawk ET", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA734860", "pmid": "34633706", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA734860", "pmid": "35477306", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}]}, "hawley ak": {"display": "Hawley AK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA377096", "pmid": "35222325", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soda lake innocuated bioreactors"}]}, "hayasaka k": {"display": "Hayasaka K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "hayase e": {"display": "Hayase E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "hayase t": {"display": "Hayase T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "hayashizaki y": {"display": "Hayashizaki Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA30563", "pmid": "18976571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High throughput sequence to detect the presence of a pathogenic microbe in a clinical hum…"}]}, "hayden hs": {"display": "Hayden HS", "group": false, "n_studies": 8, "studies": [{"acc": "PRJNA1015704", "pmid": "40042126", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal and oropharyngeal microbiota from infants with cystic fibrosis on and off beta-lact…"}, {"acc": "PRJNA1177516", "pmid": "40483244", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Changes in Fecal Microbiota in Adults with Cystic Fibrosis with 6 Months of CFTR Modulato…"}, {"acc": "PRJNA285502", "pmid": "26288277", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiota transplantation (FMT) for ulcerative colitis"}, {"acc": "PRJNA314903", "pmid": "24178246", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Pseudomonas Aeruginosa Early CF Adaptive Changes"}, {"acc": "PRJNA510445", "pmid": "31959989", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA510445", "pmid": "34525965", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA516442", "pmid": "30784601", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Depletion of human DNA from complex clinical samples for metagenomic sequencing"}, {"acc": "PRJNA530252", "pmid": "32631930", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effect of cycled, inhaled tobramycin on the sputum microbiome in cystic fibrosis"}, {"acc": "PRJNA860728", "pmid": "36121157", "pos": "first", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "GenCap-Seq Selectively Enriches Bacterial DNA and Enables Genome-wide Measurement of Intr…"}]}, "hayden mk": {"display": "Hayden MK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA672955", "pmid": "34155414", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}]}, "haydu le": {"display": "Haydu LE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "hayman dj": {"display": "Hayman DJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "haymond m": {"display": "Haymond M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA400259", "pmid": "33328537", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human Milk Microbiome Metagenome"}]}, "haynes mr": {"display": "Haynes MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA80601", "pmid": "23554892", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterization of the nasopharyngeal virome in patients with influenza-like illness of…"}]}, "hayward mr": {"display": "Hayward MR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB20308", "pmid": "29669589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Similarity of the dog and human gut microbiomes in gene content and response to diet"}, {"acc": "PRJNA289586", "pmid": "30747106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}]}, "hazlett hc": {"display": "Hazlett HC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63183", "pmid": "37457984", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Interactions Between Bifidobacterium and Bacteroides and Human Milk Oligosaccharides and…"}]}, "he b": {"display": "He B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "he f": {"display": "He F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12669", "pmid": "27583441", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}]}, "he h": {"display": "He H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA776087", "pmid": "36973820", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}, {"acc": "PRJNA812695", "pmid": "37714338", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Metagenome"}]}, "he j": {"display": "He J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA237795", "pmid": "35583332", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Swine feces Targeted Locus (Loci)"}, {"acc": "PRJNA847006", "pmid": "37280255", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA847017", "pmid": "37280255", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads of GF mice"}]}, "he jr": {"display": "He JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA312041", "pmid": "27226242", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human fecal raw sequence reads"}]}, "he k": {"display": "He K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB15111", "pmid": "26932197", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}, {"acc": "PRJEB2778", "pmid": "33353204", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "he n": {"display": "He N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1464060", "pmid": "42293186", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Efficacy of Bifidobacterium lactis BLa80 in Preventing Early Childhood Eczema and Respira…"}]}, "he p": {"display": "He P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": "38908894", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "he q": {"display": "He Q", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1070846", "pmid": "38647334", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal metagenomic sequecing"}, {"acc": "PRJNA290380", "pmid": "41796297", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA436359", "pmid": "41796297", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbial factors implicated in disease progression and treatment response in pediatr…"}]}, "he w": {"display": "He W", "group": false, "n_studies": 36, "studies": [{"acc": "PRJEB15257", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB26810", "pmid": "40347294", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}, {"acc": "PRJEB32631", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB39223", "pmid": "39138199", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB6456", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA231909", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA272371", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA301903", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA436562", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA524703", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA549787", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA557731", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA698986", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA715601", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA716780", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA916952", "pmid": "39138199", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Stanford's Outcomes Research in Kids (STORK) Virome"}]}, "he x": {"display": "He X", "group": false, "n_studies": 7, "studies": [{"acc": "PRJNA1081790", "pmid": "38838490", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Dongkemadi glacier"}, {"acc": "PRJNA1092353", "pmid": "39353343", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Benzothiazole-degrading consortia Raw sequence reads and Metagenome"}, {"acc": "PRJNA1127293", "pmid": "39065200", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "fecal microbial composition in Parkinson's disease"}, {"acc": "PRJNA323812", "pmid": "27866251", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "wastewater metagenome Genome sequencing"}, {"acc": "PRJNA398963", "pmid": "30522530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "oral bacterial species growing in a complex biofilm Raw sequence reads"}, {"acc": "PRJNA401977", "pmid": "41620634", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome from patients with gestational diabetes mellitus"}, {"acc": "PRJNA525517", "pmid": "30975748", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Klebsiella and Providencia notch a tag-team victory in a battle royale of oral bacteria"}]}, "he y": {"display": "He Y", "group": false, "n_studies": 19, "studies": [{"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJNA1119243", "pmid": "38947127", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbial Metabolism Analysis in the Cecum of New Zealand Rabbits under Short-Term Fatten…"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA750571", "pmid": "35306253", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Resistome in sewage surviellance"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "he z": {"display": "He Z", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB14607", "pmid": "25721383", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "By taking three metagenomic approaches to reveal the microplankton communities from compo…"}, {"acc": "PRJNA1390667", "pmid": "42071227", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal sample"}, {"acc": "PRJNA656389", "pmid": "38365259", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of the digestive tract of buffalo"}, {"acc": "PRJNA657455", "pmid": "38365259", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}]}, "healey n": {"display": "Healey N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1235110", "pmid": "39798461", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome"}]}, "heasley c": {"display": "Heasley C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "heath ac": {"display": "Heath AC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA145005", "pmid": "22030749", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}, {"acc": "PRJNA32089", "pmid": "19043404", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}]}, "heavens d": {"display": "Heavens D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22207", "pmid": "31844297", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}]}, "hebert a": {"display": "Hébert A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6314", "pmid": "25496341", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Construction of a dairy microbial genome catalog opens new perspectives for the metagenom…"}]}, "hecht dw": {"display": "Hecht DW", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB8347", "pmid": "42259839", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJNA1148144", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Biosignatures of late-onset extraintestinal bacterial infections"}, {"acc": "PRJNA301903", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA48479", "pmid": "42259839", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA489090", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA799247", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA884103", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}]}, "heckel be": {"display": "Heckel BE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "hedbavna p": {"display": "Hedbavna P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB19676", "pmid": "26512868", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of microbes attached to fuel cell electrodes"}]}, "hedblad b": {"display": "Hedblad B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "hedjazi l": {"display": "Hedjazi L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB23292", "pmid": "29899081", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysbiosis, including decreased gut microbial richness (MGR) and composition modifications…"}]}, "hedlund bp": {"display": "Hedlund BP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA427267", "pmid": "29235710", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pearl River metagenomics Raw sequence reads"}]}, "hedman k": {"display": "Hedman K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA348754", "pmid": "27939314", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}, {"acc": "PRJNA924035", "pmid": "36951096", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Unmasking the Tissue-Resident Eukaryotic DNA virome in Humans"}]}, "hedman km": {"display": "Hedman KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657304", "pmid": "33542301", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun Sequencing of Dog Coprolites"}]}, "hegner cl": {"display": "Hegner CL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078280", "pmid": "38405928", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Quantifying forms and functions of intestinal bile acid pools in mice"}]}, "heguy a": {"display": "Heguy A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1420872", "pmid": "41027803", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of gut/stool samples Metagenome"}]}, "heid j": {"display": "Heid J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "heidelberg kb": {"display": "Heidelberg KB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA81851", "pmid": "22773627", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Hypersaline Lake Metagenome"}, {"acc": "PRJNA81851", "pmid": "23853523", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Hypersaline Lake Metagenome"}]}, "heidenreich m": {"display": "Heidenreich M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "heidrich v": {"display": "Heidrich V", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1140720", "pmid": "41565819", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Modelling human microbiome transmission in a nursery setting"}, {"acc": "PRJNA300541", "pmid": "42312244", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}]}, "heilig hg": {"display": "Heilig HG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}]}, "hein cb": {"display": "Hein CB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA630999", "pmid": "33665175", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}]}, "heinken a": {"display": "Heinken A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA379120", "pmid": "39739091", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA595749", "pmid": "39739091", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}]}, "heinrichs me": {"display": "Heinrichs ME", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA811790", "pmid": "37816747", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial and viral dispersal along the natural water cycle"}]}, "heinsen fa": {"display": "Heinsen FA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB3085", "pmid": "23236009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}]}, "heintz-buschart a": {"display": "Heintz-Buschart A", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB32631", "pmid": "40396737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "28721231", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA289586", "pmid": "27723761", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA289586", "pmid": "30747106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA379120", "pmid": "30504906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA381395", "pmid": "28843021", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut and nasal microbiome in Parkinson''s disease"}, {"acc": "PRJNA489090", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA595749", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}]}, "heinz e": {"display": "Heinz E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63570", "pmid": null, "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Klebsiella_transmission_and_immunity_on_Chatinkha_nursery__Neo_TRACK_"}]}, "heisel t": {"display": "Heisel T", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1019702", "pmid": "39043677", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "39265573", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1198101", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic re-sequencing of human milk"}, {"acc": "PRJNA903921", "pmid": "40469735", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Mycobiome Maturation and Its Determinants during Infancy: A Comparison of Shotgun Met…"}]}, "helbling jc": {"display": "Helbling JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA438436", "pmid": "31270376", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The gut microbiota influence the basal physiological parameters in equine athletes"}]}, "helft g": {"display": "Helft G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "heller r": {"display": "Heller R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}]}, "heller s": {"display": "Heller S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "hellgren c": {"display": "Hellgren C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62678", "pmid": "31641004", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "BASIC: Biology, Affect, Stress, Imaging and Cognition in pregnancy"}]}, "hellmann kt": {"display": "Hellmann KT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748448", "pmid": "34523979", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic WGS of Preterm Infant Skin and Stool"}]}, "hellmann md": {"display": "Hellmann MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "helmink ba": {"display": "Helmink BA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "helmy ya": {"display": "Helmy YA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "32351922", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "heltshe s": {"display": "Heltshe S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA314903", "pmid": "24178246", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Pseudomonas Aeruginosa Early CF Adaptive Changes"}]}, "heltshe sl": {"display": "Heltshe SL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA510445", "pmid": "31959989", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA510445", "pmid": "34525965", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}]}, "helve o": {"display": "Helve O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64567", "pmid": "33007265", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Maternal FMT in Cesarean-Born Infants - WGS sequencing of infants (1w to 1year) and mater…"}]}, "helzer kt": {"display": "Helzer KT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA255985", "pmid": "25279840", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human saliva, creek water, and synthetic metagenomic samples used in selective DNA isolat…"}]}, "hemp j": {"display": "Hemp J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA348149", "pmid": "28360330", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome"}]}, "henaff em": {"display": "Hénaff EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "henderson dk": {"display": "Henderson DK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445389", "pmid": "30586509", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Sphingomonas koreensis Genome sequencing and assembly"}]}, "henderson e": {"display": "Henderson E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27927929", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "henderson sl": {"display": "Henderson SL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}]}, "hendricks h": {"display": "Hendricks H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1502892", "pmid": "40490486", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Associations between antibiotic exposure intensity, intestinal microbiome perturbations,…"}]}, "hendrickson c": {"display": "Hendrickson C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "hendrickson cl": {"display": "Hendrickson CL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA647720", "pmid": "33727392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiome sequencing during a high fiber diet intervention"}]}, "hendrickson el": {"display": "Hendrickson EL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA525517", "pmid": "30975748", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Klebsiella and Providencia notch a tag-team victory in a battle royale of oral bacteria"}]}, "hendrickson j": {"display": "Hendrickson J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "hendrickson rc": {"display": "Hendrickson RC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}]}, "hendrickson s": {"display": "Hendrickson S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA546004", "pmid": "31451108", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Maturation of the infant rhesus macaque (Macaca mulatta) gut microbiome and its role in t…"}]}, "hendrickson sm": {"display": "Hendrickson SM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB5224", "pmid": "38182754", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA729051", "pmid": "34158595", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Growth faltering regardless of chronic diarrhea is associated with mucosal immune dysfunc…"}]}, "hengler s": {"display": "Hengler S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "henke d": {"display": "Henke D", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1195144", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "henn bm": {"display": "Henn BM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "henneke p": {"display": "Henneke P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "hennigan s": {"display": "Hennigan S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "henny c": {"display": "Henny C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB66721", "pmid": "39384533", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metabolic features explaining the prevalence Bathyarchaeia among microbial communities in…"}, {"acc": "PRJEB98232", "pmid": "41459228", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Cryptic sulfur cycling sustains lithotrophy in the deep biosphere of ferruginous Lake Tow…"}]}, "henrick bm": {"display": "Henrick BM", "group": false, "n_studies": 10, "studies": [{"acc": "PRJNA273761", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA327106", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA390646", "pmid": "29242832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA630999", "pmid": "33665175", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA633576", "pmid": "33479326", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA63661", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "henriksson he": {"display": "Henriksson HE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62678", "pmid": "31641004", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "BASIC: Biology, Affect, Stress, Imaging and Cognition in pregnancy"}]}, "henrissat b": {"display": "Henrissat B", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB38446", "pmid": "34001614", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiota (16S rDNA sequencing) and microbiome (shotgun sequencing) data of a pig model…"}, {"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}, {"acc": "PRJNA145005", "pmid": "22030749", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}, {"acc": "PRJNA209131", "pmid": "23976882", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacter…"}, {"acc": "PRJNA32089", "pmid": "19043404", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}, {"acc": "PRJNA43253", "pmid": "20363958", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human fecal microbiome"}, {"acc": "PRJNA49397", "pmid": "20962874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Canine gastrointestinal metagenome"}]}, "henrissat s": {"display": "Henrissat S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}]}, "henry ag": {"display": "Henry AG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA278393", "pmid": "25981789", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}]}, "henry md": {"display": "Henry MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA847605", "pmid": "36565815", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosa…"}]}, "hentschel u": {"display": "Hentschel U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}]}, "henze l": {"display": "Henze L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB86263", "pmid": "39218875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gender-affirming hormonal therapy induces a gender-concordant fecal metagenome transition…"}]}, "herazo-alvarez j": {"display": "Herazo-Álvarez J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "40131312", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "herbig a": {"display": "Herbig A", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}, {"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}, {"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}, {"acc": "PRJEB37508", "pmid": "32528126", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "A treponemal genome from an historic plague victim supports recent emergence of yaws and…"}, {"acc": "PRJEB41353", "pmid": "33997698", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Mass burial genomics reveals outbreak of enteric paratyphoid fever in the Late Medieval t…"}, {"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}, {"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "herbold cw": {"display": "Herbold CW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA431961", "pmid": "39696719", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Geothermal fumarole subsurface microbial communities from Mt. Erebus, Antarctica"}]}, "hercberg s": {"display": "Hercberg S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "hercog r": {"display": "Hercog R", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB12357", "pmid": "27126044", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}, {"acc": "PRJEB46778", "pmid": "27126044", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "herisson fm": {"display": "Herisson FM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352475", "pmid": "36420990", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "herman d": {"display": "Herman D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB2778", "pmid": "22546241", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}]}, "herman p": {"display": "Herman P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657818", "pmid": "33377127", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}]}, "herman s": {"display": "Herman S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "hermes g": {"display": "Hermes G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "hermes gda": {"display": "Hermes GDA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB62690", "pmid": "37513505", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, 5-HMO supplemented formula vs. control formula vs. breastfed"}, {"acc": "PRJNA1159139", "pmid": "39377603", "pos": null, "reason_code": "host_synthetic", "src": "L", "status": "excluded", "title_short": "I-TIM-2 validation (VAL)"}]}, "hernandez a": {"display": "Hernandez A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA312222", "pmid": "27303377", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genome reconstructions from human gut metagenomes"}]}, "hernandez tl": {"display": "Hernandez TL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA845806", "pmid": "35966074", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Trial of Diet in Gestational Diabetes Mellitus: Metabolic Consequences to Mother and Offs…"}]}, "hernandez-alvarado n": {"display": "Hernandez-Alvarado N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019702", "pmid": "39043677", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}]}, "hernandez-castro r": {"display": "Hernández-Castro R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "hernandez-chavez c": {"display": "Hernandez-Chavez C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA776332", "pmid": "35280991", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Altered gut microbiome and fecal immune phenotype in early preterm infants with leaky gut"}]}, "hernandez-garcia r": {"display": "Hernández-García R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "40131312", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "hernandez-leyva a": {"display": "Hernandez-Leyva A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59709", "pmid": "38560624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut metagenome harbors metabolic and antibiotic resistance signatures of established…"}]}, "hernandez-lorca m": {"display": "Hernández-Lorca M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA916259", "pmid": "40140473", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}]}, "hernando-amado s": {"display": "Hernando-Amado S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}]}, "herndl g": {"display": "Herndl G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB77875", "pmid": null, "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Seawater metagenomes collected during Jellyfish enrichment experiment"}]}, "herndl gj": {"display": "Herndl GJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85785", "pmid": "41437131", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Seawater Metagenomes from a Wastewater Exposure Experiment"}]}, "herold m": {"display": "Herold M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA230567", "pmid": "29075368", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33077707", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA379120", "pmid": "30504906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}]}, "herp s": {"display": "Herp S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}]}, "herpe ye": {"display": "Herpe YE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "herr d": {"display": "Herr D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "42311381", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "herrema h": {"display": "Herrema H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}, {"acc": "PRJNA499081", "pmid": "33794724", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}]}, "herrera af": {"display": "Herrera AF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "herrera ja": {"display": "Herrera JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12636", "pmid": "26818667", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of P. acnes levels in NGS data from cancer samples"}]}, "herrera s": {"display": "Herrera S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "herrera-deguise c": {"display": "Herrera-deGuise C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1171764", "pmid": "40524271", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut metagenome of IBD patients and healthy controls"}]}, "herrero p": {"display": "Herrero P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352475", "pmid": "36420990", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "herrmann f": {"display": "Herrmann F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43581", "pmid": "34737977", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}]}, "herrmann fr": {"display": "Herrmann FR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43505", "pmid": "34535959", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut barrier and microbiota changes with glycine and branched chain amino acids supplement…"}]}, "hertel jk": {"display": "Hertel JK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}, {"acc": "PRJEB59861", "pmid": "31678062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "herth f": {"display": "Herth F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "herting e": {"display": "Herting E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "hertz s": {"display": "Hertz S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": "39122767", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "heshiki y": {"display": "Heshiki Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA626477", "pmid": "34002024", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut microbiota Raw sequence reads with and without cancer cachexia"}]}, "hess al": {"display": "Hess AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36898", "pmid": "33629506", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics analysis on overweight subjects under a caloric restriction intervention with…"}]}, "hess bm": {"display": "Hess BM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA607328", "pmid": "32381611", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Whole-genome sequencing of bacteria, fungi, plants, and metagenomes"}]}, "hess m": {"display": "Hess M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1011899", "pmid": "40155393", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Collaborative spiking study 2B for high throughput sequencing for virus detection"}]}, "hess-erga ok": {"display": "Hess-Erga OK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1233203", "pmid": null, "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Microbiome of recirculating aquaculture systems under different particle loads (MikroRAS)"}]}, "hession wc": {"display": "Hession WC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA506850", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "USDA Developing Computational Tools To Identify Critical Control Points For Mitigating Th…"}]}, "heston sm": {"display": "Heston SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA947616", "pmid": "37974294", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome and bloodstream infections among premature infants in Singapore"}]}, "hetland mak": {"display": "Hetland MAK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1305341", "pmid": "42013844", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "ProRIDE Deep Seq Metagenomics Raw sequence reads"}]}, "hettich rl": {"display": "Hettich RL", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA209131", "pmid": "23976882", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacter…"}, {"acc": "PRJNA273761", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "36478853", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA376566", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "36478853", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA717139", "pmid": "34154658", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitaliz…"}]}, "heylen e": {"display": "Heylen E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344863", "pmid": "27666390", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral Metagenomics of fecal samples of fruit bats"}]}, "heyman m": {"display": "Heyman M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}]}, "heynderickx h": {"display": "Heynderickx H", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "heyne ho": {"display": "Heyne HO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}]}, "hibberd mc": {"display": "Hibberd MC", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB38446", "pmid": "34001614", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiota (16S rDNA sequencing) and microbiome (shotgun sequencing) data of a pig model…"}, {"acc": "PRJEB45356", "pmid": "38093016", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": "42014682", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}]}, "hibberd ml": {"display": "Hibberd ML", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA16209", "pmid": "16336043", "pos": null, "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of RNA viruses in human feces"}, {"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "hickman b": {"display": "Hickman B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27325", "pmid": "30214024", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}, {"acc": "PRJEB89462", "pmid": "41873970", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of phage enrichment on the observed infant gut phageome"}]}, "hicks nd": {"display": "Hicks ND", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "28721231", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "29075368", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "hickstein dd": {"display": "Hickstein DD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}]}, "hidalgo g": {"display": "Hidalgo G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}]}, "hidalgo-vargas m": {"display": "Hidalgo-Vargas M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "hiebert j": {"display": "Hiebert J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "hiergeist a": {"display": "Hiergeist A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "higgins n": {"display": "Higgins N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "higgins s": {"display": "Higgins S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1160256", "pmid": "39919360", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": "40941064", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}]}, "higham t": {"display": "Higham T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}, {"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "highlander sk": {"display": "Highlander SK", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA383868", "pmid": "28910633", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "30482830", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA695570", "pmid": "34442687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "hilbert k": {"display": "Hilbert K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "hildebrand f": {"display": "Hildebrand F", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12357", "pmid": "27126044", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB28730", "pmid": "30658995", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB46778", "pmid": "27126044", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "hildebrandt t": {"display": "Hildebrandt T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB86263", "pmid": "39218875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gender-affirming hormonal therapy induces a gender-concordant fecal metagenome transition…"}]}, "hill c": {"display": "Hill C", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA385126", "pmid": "29761040", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA446038", "pmid": "30526683", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}, {"acc": "PRJNA48479", "pmid": "29761040", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA678472", "pmid": "34407825", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Long-term persistence of crAss-like phage crAss001 in Bacteroides intestinalis cultures i…"}]}, "hill cc": {"display": "Hill CC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA725416", "pmid": "33996627", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Emory University African American Vaginal, Oral, and Gut Microbiome in Pregnancy Cohort S…"}]}, "hill gr": {"display": "Hill GR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA544874", "pmid": "31928131", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome analysis of mice in association with graft-vs-host disease"}]}, "hill ja": {"display": "Hill JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29554870", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "hill mj": {"display": "Hill MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35337", "pmid": "11075884", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Analysis of freeze-dried faecal samples collected from individuals between 1974 and 1980"}]}, "hillestad tow": {"display": "Hillestad TOW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "hilliam yk": {"display": "Hilliam YK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081394", "pmid": "38564694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sinus, throat, and sputum airway microbiology in cystic fibrosis"}]}, "hillion kh": {"display": "Hillion KH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB77434", "pmid": "37271782", "pos": null, "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Vaginal Microbiota Dynamics in Pregnancy"}]}, "hillpot ec": {"display": "Hillpot EC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "hilt ee": {"display": "Hilt EE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1458854", "pmid": "42370707", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Validation of an Integrated Metagenomic Pipeline Combining Optimized Wet Lab Processing a…"}]}, "hilty m": {"display": "Hilty M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21259", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}]}, "hind aj": {"display": "Hind AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522699", "pmid": "31427729", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}]}, "hinde k": {"display": "Hinde K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15633", "pmid": "35406036", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}]}, "hinic v": {"display": "Hinic V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35490", "pmid": "32187006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tick-Borne Relapsing Fever caused by Borrelia persica in a Traveler returning from Centra…"}]}, "hink t": {"display": "Hink T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1067813", "pmid": "39731916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C. difficile-associated mouse and human fecal metagenomes"}]}, "hinterwirth a": {"display": "Hinterwirth A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "hiorns a": {"display": "Hiorns A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39610", "pmid": "39216480", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}]}, "hippchen t": {"display": "Hippchen T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "hiraishi k": {"display": "Hiraishi K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA694773", "pmid": "33808480", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Inhibitory effects of breast milk-derived Lactobacillus rhamnosus Probio-M9 on colitis-as…"}, {"acc": "PRJNA741607", "pmid": "38540144", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Inhibitory Effects of Lactulose on Colitis-Associated Carcinogenesis by Restoration of th…"}, {"acc": "PRJNA835973", "pmid": "38540144", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Lactobacillus rhamnosus Probio-M9 alleviates colitis-associated tumorigenesis via modifie…"}]}, "hirano k": {"display": "Hirano K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA694773", "pmid": "33808480", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Inhibitory effects of breast milk-derived Lactobacillus rhamnosus Probio-M9 on colitis-as…"}]}, "hirose j": {"display": "Hirose J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6456", "pmid": "35768643", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "hirose n": {"display": "Hirose N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "hisada y": {"display": "Hisada Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "hitchings md": {"display": "Hitchings MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912682", "pmid": "39727415", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}]}, "hites m": {"display": "Hites M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB43581", "pmid": "34295911", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}, {"acc": "PRJEB44898", "pmid": "34295911", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hyperammonemia syndrome following lung transplantation."}]}, "hjelmesaeth j": {"display": "Hjelmesæth J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}, {"acc": "PRJEB59861", "pmid": "31678062", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "hjelmgren o": {"display": "Hjelmgren O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "hjelmso m": {"display": "Hjelmsø M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}]}, "hjerde e": {"display": "Hjerde E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB29052", "pmid": "30505830", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJNA898628", "pmid": "37187112", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "PINGU Fecal samples Metagenome"}]}, "hjorth mf": {"display": "Hjorth MF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36898", "pmid": "33629506", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics analysis on overweight subjects under a caloric restriction intervention with…"}]}, "hjorth s": {"display": "Hjorth S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "ho b": {"display": "Ho B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}]}, "ho d": {"display": "Ho D", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "ho e": {"display": "Ho E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "ho ex": {"display": "Ho EX", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA311208", "pmid": "27406942", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Severe gut microbiota dysbiosis is associated with poor growth in patients with short bow…"}]}, "ho ich": {"display": "Ho ICH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}]}, "ho iht": {"display": "Ho IHT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}]}, "ho jy": {"display": "Ho JY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB17097", "pmid": "39878462", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "St Johns Island Resistome project"}, {"acc": "PRJDB17097", "pmid": "40226095", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "St Johns Island Resistome project"}]}, "ho s": {"display": "Ho S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15633", "pmid": "35406036", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}]}, "ho ys": {"display": "Ho YS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "hobbs g": {"display": "Hobbs G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "hocking js": {"display": "Hocking JS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "hodgskiss lh": {"display": "Hodgskiss LH", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1108908", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1108960", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1109334", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}]}, "hodiamont cj": {"display": "Hodiamont CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46779", "pmid": "29566738", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Extended-Spectrum Beta Lactamase Carriers."}]}, "hoedt ec": {"display": "Hoedt EC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715634", "pmid": "34035441", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Novel Strain Level Resolution of Crohns Disease Mucosa-Associated Microbiota via an ex vi…"}, {"acc": "PRJNA907943", "pmid": "36949471", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Characterisation and isolation of novel host-associated Methanocorpusculum species from n…"}]}, "hoekstra jb": {"display": "Hoekstra JB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}]}, "hoen ag": {"display": "Hoen AG", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB29078", "pmid": "37874156", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA296814", "pmid": "29973274", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "30135504", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "34215179", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "34454437", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35568730", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35847562", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35906254", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "36632065", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "37138613", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA322188", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA695570", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "hoentjen f": {"display": "Hoentjen F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87602", "pmid": "37243505", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteria in colitis associated cancer development"}]}, "hofer v": {"display": "Höfer V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "hoffman k": {"display": "Hoffman K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA416160", "pmid": "39856391", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "The Environmental Determinants of Diabetes in the Young (TEDDY) Parent Study"}]}, "hoffman kl": {"display": "Hoffman KL", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1084251", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tryptophan metabolites in fecal samples from healthy humans"}, {"acc": "PRJNA1195142", "pmid": "39282326", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "hoffman lr": {"display": "Hoffman LR", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA1015704", "pmid": "40042126", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal and oropharyngeal microbiota from infants with cystic fibrosis on and off beta-lact…"}, {"acc": "PRJNA1177516", "pmid": "40483244", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Changes in Fecal Microbiota in Adults with Cystic Fibrosis with 6 Months of CFTR Modulato…"}, {"acc": "PRJNA314903", "pmid": "24178246", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Pseudomonas Aeruginosa Early CF Adaptive Changes"}, {"acc": "PRJNA510445", "pmid": "31959989", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA510445", "pmid": "34525965", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA516442", "pmid": "30784601", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Depletion of human DNA from complex clinical samples for metagenomic sequencing"}, {"acc": "PRJNA530252", "pmid": "32631930", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effect of cycled, inhaled tobramycin on the sputum microbiome in cystic fibrosis"}]}, "hofman c": {"display": "Hofman C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}, {"acc": "PRJNA445215", "pmid": "29959351", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "hofman ca": {"display": "Hofman CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445215", "pmid": "29959351", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "hofso d": {"display": "Hofsø D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}, {"acc": "PRJEB59861", "pmid": "31678062", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "hofstaedter ce": {"display": "Hofstaedter CE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA451186", "pmid": "30376898", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Placenta Microbiome"}, {"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "hogan a": {"display": "Hogan A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA289586", "pmid": "27723761", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}]}, "hogan ah": {"display": "Hogan AH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA379120", "pmid": "30504906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}]}, "hogan kn": {"display": "Hogan KN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "hogarth dk": {"display": "Hogarth DK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB20527", "pmid": "26627545", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Corticosteroid therapy and airflow obstruction influence the bronchial microbiome, which…"}]}, "hogenkamp a": {"display": "Hogenkamp A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542703", "pmid": "42131447", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}]}, "hogg id": {"display": "Hogg ID", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA630822", "pmid": "34732568", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA630822", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "hogshead b": {"display": "Hogshead B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA484151", "pmid": "31379808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural and Urban infant''s fecal microbiota study"}]}, "hogstrom l": {"display": "Hogstrom L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA657818", "pmid": "33377127", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA685168", "pmid": "34297922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics suggest diverse mechanisms for response to biologic therapies in IBD"}]}, "hohmann c": {"display": "Hohmann C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}]}, "hoinard d": {"display": "Hoinard D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1004259", "pmid": "38047654", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic and Amplicon-based Nanopore Sequencing of French Human Monkeypox direct from…"}]}, "holdbrooks h": {"display": "Holdbrooks H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA630999", "pmid": "33665175", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}]}, "holden pa": {"display": "Holden PA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1023249", "pmid": "38881311", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "cultivated microbial species from anaerobic digester sludge and goat feces"}]}, "holicek p": {"display": "Holicek P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "holland dj": {"display": "Holland DJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA637785", "pmid": "33346848", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA637785", "pmid": "33985595", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}]}, "holland la": {"display": "Holland LA", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1045584", "pmid": "39185682", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of SARS-CoV-2 in stool sample from women living with HIV and HIV-negative women an…"}, {"acc": "PRJNA1090887", "pmid": "39053521", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human adenovirus outbreak at a university campus monitored by wastewater and clinical sur…"}, {"acc": "PRJNA635738", "pmid": "33727396", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Breast milk Microbiome/Virome of HIV+ Kenyan Women is Not Altered by Immunosuppression"}]}, "holland p": {"display": "Holland P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912638", "pmid": "37213047", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MICROBIOME IN AGING GUT AND BRAIN (MiaGB) STUDY"}]}, "holland sc": {"display": "Holland SC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1090887", "pmid": "39053521", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human adenovirus outbreak at a university campus monitored by wastewater and clinical sur…"}]}, "holland sm": {"display": "Holland SM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}, {"acc": "PRJNA46333", "pmid": "24170601", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "holleman f": {"display": "Holleman F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}]}, "hollemon d": {"display": "Hollemon D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "holler e": {"display": "Holler E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "hollister eb": {"display": "Hollister EB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46337", "pmid": "28274256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}]}, "holm jb": {"display": "Holm JB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA208535", "pmid": "40607829", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The daily dynamics of the vaginal microbiota before and after bacterial vaginosis"}]}, "holman db": {"display": "Holman DB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA779404", "pmid": "39584815", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Florfenicol treatment and the piglet gut microbiome"}]}, "holmes cj": {"display": "Holmes CJ", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1111475", "pmid": "39813050", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics in patients with central centrifugal cicatricial alopecia (CCCA)"}, {"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}, {"acc": "PRJNA1369410", "pmid": "42242497", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics sequencing from patients with CD4 lymphopenia"}, {"acc": "PRJNA46333", "pmid": "37054678", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "holmes e": {"display": "Holmes E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473348", "pmid": "36217535", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effect of bariatric surgery on the faecal metagenome"}]}, "holmes ea": {"display": "Holmes EA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA860728", "pmid": "36121157", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "GenCap-Seq Selectively Enriches Bacterial DNA and Enables Genome-wide Measurement of Intr…"}]}, "holmes ec": {"display": "Holmes EC", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA348754", "pmid": "27939314", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}, {"acc": "PRJNA352376", "pmid": "28072390", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA841246", "pmid": "35765950", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Feline panleukopenia and healthy control feline faecal samples"}]}, "holmes s": {"display": "Holmes S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49206", "pmid": "30439937", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}]}, "holmes sp": {"display": "Holmes SP", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA288562", "pmid": "26283357", "pos": null, "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}, {"acc": "PRJNA290380", "pmid": "32728114", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "holmfeldt k": {"display": "Holmfeldt K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA950101", "pmid": "39449105", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomes from aquatic ecosystems of the Central Arctic"}]}, "holmstrup p": {"display": "Holmstrup P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396840", "pmid": "28979798", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomic and metatranscriptomic analysis of saliva reveals disease-associated microbio…"}]}, "holst aq": {"display": "Holst AQ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62690", "pmid": "37513505", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, 5-HMO supplemented formula vs. control formula vs. breastfed"}]}, "holst jj": {"display": "Holst JJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "holterhus pm": {"display": "Holterhus PM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB86263", "pmid": "39218875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gender-affirming hormonal therapy induces a gender-concordant fecal metagenome transition…"}]}, "holzschuh el": {"display": "Holzschuh EL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28369502", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "honaker rw": {"display": "Honaker RW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1222153", "pmid": "41547860", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Waltham Catalogue for the Canine Gut Microbiome: A complete taxonomic and functional cata…"}]}, "honda a": {"display": "Honda A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "honda k": {"display": "Honda K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}, {"acc": "PRJNA675598", "pmid": "34325466", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}, {"acc": "PRJNA821237", "pmid": "36071157", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "honda t": {"display": "Honda T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA30563", "pmid": "18976571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High throughput sequence to detect the presence of a pathogenic microbe in a clinical hum…"}]}, "hong dk": {"display": "Hong DK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "hong l": {"display": "Hong L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1238458", "pmid": "42654723", "pos": "last", "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Raw data of 16S rRNA sequencing of preterm infants' feces (NEC study)"}]}, "hong py": {"display": "Hong PY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA272371", "pmid": "29049378", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}]}, "hong sj": {"display": "Hong SJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45443", "pmid": "35485368", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJEB45443", "pmid": "40442154", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJNA979436", "pmid": "40442154", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}]}, "hong sy": {"display": "Hong SY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843211", "pmid": "36153619", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "the renal pelvis urobiome in the unilateral kidney stone patients"}]}, "hong y": {"display": "Hong Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA812695", "pmid": "37714338", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Metagenome"}]}, "honkanen j": {"display": "Honkanen J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "36195095", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "honkanen jk": {"display": "Honkanen JK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1044118", "pmid": "38061464", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human oral and gut microbiome in first episode psychosis patients"}]}, "honkela a": {"display": "Honkela A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB32631", "pmid": "36456554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}]}, "hoogland m": {"display": "Hoogland M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445215", "pmid": "29959351", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "hoopmann mr": {"display": "Hoopmann MR", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}, {"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}, {"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "28721231", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "hoops sl": {"display": "Hoops SL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA903921", "pmid": "40469735", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Mycobiome Maturation and Its Determinants during Infancy: A Comparison of Shotgun Met…"}]}, "hoozemans jb": {"display": "Hoozemans JB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "hopfer b": {"display": "Hopfer B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": "29152325", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": "32354144", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "hopkins b": {"display": "Hopkins B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130617", "pmid": "41505541", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}]}, "hopmans ec": {"display": "Hopmans EC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4261", "pmid": "21593795", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of two depths of the Arabian sea oxygen minimum zone using SOLiD a…"}]}, "hoppe m": {"display": "Hoppe M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52550", "pmid": "36697964", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of samples suspected of featuring cable bacteria genomic DNA with s…"}]}, "hoque nj": {"display": "Hoque NJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "horiba k": {"display": "Horiba K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB10705", "pmid": "34859110", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Blood microbiome in febrile patients"}, {"acc": "PRJDB10711", "pmid": "34090359", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics for pathogens detection from patients with fever of unknown origin"}]}, "horie m": {"display": "Horie M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB8125", "pmid": "31549291", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metaviromic analyses on crane fecal samples"}]}, "horii t": {"display": "Horii T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA30563", "pmid": "18976571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High throughput sequence to detect the presence of a pathogenic microbe in a clinical hum…"}]}, "hornero-ramirez h": {"display": "Hornero-Ramirez H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76794", "pmid": "39710576", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "hornick jl": {"display": "Hornick JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "hornikx dlah": {"display": "Hornikx DLAH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87602", "pmid": "37243505", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteria in colitis associated cancer development"}]}, "horrocks v": {"display": "Horrocks V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60914", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Roles of gut microbiota-mediated nutrient competition and metabolite inhibition in the in…"}]}, "horswill ar": {"display": "Horswill AR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA551026", "pmid": "32130897", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Monogenic skin disease driven by staphylococcal dysbiosis"}]}, "horton db": {"display": "Horton DB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}]}, "horton mk": {"display": "Horton MK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39640590", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "horvath td": {"display": "Horvath TD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}]}, "hose k": {"display": "Hose K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB50688", "pmid": "35972375", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sequencing read data for Danish soil samples"}]}, "hoskinson c": {"display": "Hoskinson C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "37644001", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "42337243", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "hosokawa a": {"display": "Hosokawa A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "hosokawa m": {"display": "Hosokawa M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA692334", "pmid": "34641955", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Recovery of high-quality assembled genomes via single-cell genome-guided binning of metag…"}]}, "hosomi k": {"display": "Hosomi K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB14457", "pmid": "36363762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of healthy Japanese adult"}]}, "hossain j": {"display": "Hossain J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "hossain mi": {"display": "Hossain MI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "hossen ma": {"display": "Hossen MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA604820", "pmid": "34936382", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin metagenome from antibiotics treated healthy human subjects"}]}, "hou g": {"display": "Hou G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1052964", "pmid": "39034349", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}]}, "hou l": {"display": "Hou L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1256929", "pmid": "42237168", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Intestinal flora of piglets"}]}, "hou p": {"display": "Hou P", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1111475", "pmid": "39813050", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics in patients with central centrifugal cicatricial alopecia (CCCA)"}, {"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}, {"acc": "PRJNA1369410", "pmid": "42242497", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics sequencing from patients with CD4 lymphopenia"}]}, "hou q": {"display": "Hou Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA602729", "pmid": "34079079", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}]}, "hou s": {"display": "Hou S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA475246", "pmid": "38486699", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "hou x": {"display": "Hou X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1256929", "pmid": "42237168", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Intestinal flora of piglets"}]}, "houbin c": {"display": "Houbin C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "houldcroft cj": {"display": "Houldcroft CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156362", "pmid": "39319086", "pos": "last", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Genomic epidemiology of human adenoviruses"}]}, "houlden h": {"display": "Houlden H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "houlder el": {"display": "Houlder EL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "houpt er": {"display": "Houpt ER", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}, {"acc": "PRJEB73590", "pmid": "37111504", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}, {"acc": "PRJNA834762", "pmid": "38427700", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA837236", "pmid": "38427700", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA912682", "pmid": "38427700", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}]}, "hourdel v": {"display": "Hourdel V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1004259", "pmid": "38047654", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic and Amplicon-based Nanopore Sequencing of French Human Monkeypox direct from…"}]}, "hourigan sk": {"display": "Hourigan SK", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1280936", "pmid": "41405404", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome of Infants in the Neonatal Intensive Care Unit"}, {"acc": "PRJNA417283", "pmid": "29988506", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA417283", "pmid": "38058267", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA417283", "pmid": "41405404", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA988496", "pmid": "38773685", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}, {"acc": "PRJNA988496", "pmid": "40823537", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}, {"acc": "PRJNA988496", "pmid": "41405404", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}]}, "houwen rhj": {"display": "Houwen RHJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "hovnanian a": {"display": "Hovnanian A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA551026", "pmid": "32130897", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Monogenic skin disease driven by staphylococcal dysbiosis"}]}, "howard ag": {"display": "Howard AG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA349463", "pmid": "28915922", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Urban vs. Rural China Microbiome"}]}, "howard-varona a": {"display": "Howard-Varona A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52748", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome function and composition in infants from rural Kenya and association with…"}, {"acc": "PRJEB6456", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "howden bp": {"display": "Howden BP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "howell a": {"display": "Howell A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA552463", "pmid": "32841606", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "IBD virome Raw sequence reads"}]}, "howell br": {"display": "Howell BR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63183", "pmid": "37457984", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Interactions Between Bifidobacterium and Bacteroides and Human Milk Oligosaccharides and…"}]}, "hoy cs": {"display": "Hoy CS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1206145", "pmid": "40898384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of the gut microbiome from infants enrolled in a randomized controlled…"}]}, "hoy-schulz ye": {"display": "Hoy-Schulz YE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644725", "pmid": "32958861", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}]}, "hoyles l": {"display": "Hoyles L", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB22207", "pmid": "31844297", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJNA473348", "pmid": "36217535", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effect of bariatric surgery on the faecal metagenome"}, {"acc": "PRJNA63661", "pmid": "32436839", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "hoyos-arango w": {"display": "Hoyos-Arango W", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA268964", "pmid": "27172044", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "27172044", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "hryckowian aj": {"display": "Hryckowian AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA678472", "pmid": "34407825", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Long-term persistence of crAss-like phage crAss001 in Bacteroides intestinalis cultures i…"}]}, "hsiao a": {"display": "Hsiao A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA145005", "pmid": "22030749", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}]}, "hsiao ey": {"display": "Hsiao EY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1184197", "pmid": "39856104", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Dietary fiber content in clinical ketogenic diets modifies the gut microbiome and seizure…"}]}, "hsu cs": {"display": "Hsu CS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1145565", "pmid": "39234544", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "WES of Taiwain Children with Enterovirus (EV) Infections"}]}, "hsu j": {"display": "Hsu J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1184197", "pmid": "39856104", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Dietary fiber content in clinical ketogenic diets modifies the gut microbiome and seizure…"}]}, "hsu mh": {"display": "Hsu MH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA936783", "pmid": "35486954", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Draft genome sequences of Group B Streptococcus isolates from infected infants or children"}]}, "hsu t": {"display": "Hsu T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA610982", "pmid": "33308267", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Determinants of S. aureus carriage in the developing infant nasal microbiome"}]}, "hu cf": {"display": "Hu CF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1145565", "pmid": "39234544", "pos": "last", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "WES of Taiwain Children with Enterovirus (EV) Infections"}]}, "hu d": {"display": "Hu D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB17097", "pmid": "39878462", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "St Johns Island Resistome project"}, {"acc": "PRJDB17097", "pmid": "40226095", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "St Johns Island Resistome project"}]}, "hu h": {"display": "Hu H", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB23524", "pmid": "38868710", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS data from FMT trial for the treatment of recurrent Clostridium difficile infection"}, {"acc": "PRJEB6456", "pmid": "38868710", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA285502", "pmid": "38868710", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota transplantation (FMT) for ulcerative colitis"}, {"acc": "PRJNA494875", "pmid": "30914068", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Reconstructions of Gut Microbiome in Weanling Pigs"}, {"acc": "PRJNA625520", "pmid": "38868710", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Linking strain engraftment in fecal microbiota transplantation with maintenance of remiss…"}]}, "hu j": {"display": "Hu J", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1420872", "pmid": "41027803", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of gut/stool samples Metagenome"}, {"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "hu jc": {"display": "Hu JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1090887", "pmid": "39053521", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human adenovirus outbreak at a university campus monitored by wastewater and clinical sur…"}]}, "hu l": {"display": "Hu L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA719915", "pmid": "34465850", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tumor microbiome contributes to an aggressive phenotype in the basal-like subtype of panc…"}]}, "hu nn": {"display": "Hu NN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA784757", "pmid": "35902819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "The Diagnosis Performance of Mycobacterium Tuberculosis Complex by Metagenomic Next-gener…"}]}, "hu p": {"display": "Hu P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA278302", "pmid": "26787827", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Alaska oil reservoir Metagenome"}]}, "hu q": {"display": "Hu Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA973819", "pmid": "38188910", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Pathogenetic characterization of a Micrococcus luteus strain isolated from an infant"}]}, "hu r": {"display": "Hu R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA681411", "pmid": "34230529", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Clinical sample from VZV patients"}]}, "hu sf": {"display": "Hu SF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1428929", "pmid": "42022809", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota and Metabolome Signatures in Preterm Infants with High versus Low Risk for…"}]}, "hu w": {"display": "Hu W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1002114", "pmid": "37823665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Direct prediction of carbapenem-resistance for Pseudomonas aeruginosa by whole genome seq…"}]}, "hu x": {"display": "Hu X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA818432", "pmid": "35783441", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Raw sequence reads"}]}, "hu y": {"display": "Hu Y", "group": false, "n_studies": 26, "studies": [{"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38486699", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA580164", "pmid": "32552447", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome Raw sequence reads"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA694773", "pmid": "33808480", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Inhibitory effects of breast milk-derived Lactobacillus rhamnosus Probio-M9 on colitis-as…"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA702770", "pmid": "33676490", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "gut microbiomes of dogs and wolves"}, {"acc": "PRJNA715658", "pmid": "40266232", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Genome-resolved metagenomics of the chicken gut microbiome"}, {"acc": "PRJNA735411", "pmid": "40266232", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Microbial Ecology of sea lion gut microbiome at Comau Fjord, Northern Patagonia (42 S). R…"}, {"acc": "PRJNA741607", "pmid": "38540144", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Inhibitory Effects of Lactulose on Colitis-Associated Carcinogenesis by Restoration of th…"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA806510", "pmid": "40487637", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of Gut Microbiota Mediated Metformin Monotherapy Failure in Type 2 Diabetes Mellitus"}, {"acc": "PRJNA835973", "pmid": "38540144", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Lactobacillus rhamnosus Probio-M9 alleviates colitis-associated tumorigenesis via modifie…"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "hu yj": {"display": "Hu YJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1071073", "pmid": "38530358", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Transgender Mouse Bone Microbiome"}, {"acc": "PRJNA725416", "pmid": "33996627", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Emory University African American Vaginal, Oral, and Gut Microbiome in Pregnancy Cohort S…"}]}, "hu z": {"display": "Hu Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14607", "pmid": "25721383", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "By taking three metagenomic approaches to reveal the microplankton communities from compo…"}]}, "huang b": {"display": "Huang B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}]}, "huang ch": {"display": "Huang CH", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA272371", "pmid": "29049378", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "huang cy": {"display": "Huang CY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "huang d": {"display": "Huang D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA973819", "pmid": "38188910", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Pathogenetic characterization of a Micrococcus luteus strain isolated from an infant"}]}, "huang f": {"display": "Huang F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA924947", "pmid": "38651859", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}]}, "huang h": {"display": "Huang H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB29433", "pmid": "39510074", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nanopore-based metagenomic sequencing analysis of control subjects and patients with AD.…"}, {"acc": "PRJNA644022", "pmid": "33891391", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiomes in algae biofilm and activated sludge under comparative operating conditions"}]}, "huang j": {"display": "Huang J", "group": false, "n_studies": 19, "studies": [{"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}, {"acc": "PRJNA924947", "pmid": "38651859", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}]}, "huang kd": {"display": "Huang KD", "group": false, "n_studies": 10, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB6456", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1115039", "pmid": "39673707", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary selective effects manifest in the human gut microbiota from species composition t…"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA947377", "pmid": "38366600", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Establishment of a non-Westernized gut microbiota in men who have sex with men is associa…"}]}, "huang l": {"display": "Huang L", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB10057", "pmid": "26180832", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Variation in the Microbiota of Ixodes ticks with geography, species and sex"}, {"acc": "PRJEB10073", "pmid": "26180832", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Variation in the Microbiota of Ixodes ticks with geography, species and sex illumina"}, {"acc": "PRJNA775062", "pmid": "41877288", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Landscapes of bacterial, viral and metabolic signatures and their interaction in early-we…"}, {"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "huang m": {"display": "Huang M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA936938", "pmid": "36992458", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "searching for viruses in Asiatic toad Raw sequence reads"}]}, "huang ml": {"display": "Huang ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28287142", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28711653", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29554870", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29898986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30383234", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30576430", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "33827948", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "huang s": {"display": "Huang S", "group": false, "n_studies": 14, "studies": [{"acc": "PRJEB14964", "pmid": "41751912", "pos": "first", "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Maternal Secretor Status and Microbiota Composition"}, {"acc": "PRJEB27914", "pmid": "41751912", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Six-week endurance exercise alters gut metagenome that is not reflected in systemic metab…"}, {"acc": "PRJEB29078", "pmid": "41751912", "pos": "first", "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA307231", "pmid": "41751912", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA32089", "pmid": "41751912", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}, {"acc": "PRJNA322188", "pmid": "41751912", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA445932", "pmid": "41751912", "pos": "first", "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA541981", "pmid": "41751912", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome in melanoma patients"}, {"acc": "PRJNA565546", "pmid": "41751912", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "fecal sample Raw sequence reads"}, {"acc": "PRJNA597371", "pmid": "34193290", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal Selective Pressure and Coevolution Project Part 4 human placebo Metagenome"}, {"acc": "PRJNA602729", "pmid": "34079079", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}, {"acc": "PRJNA602729", "pmid": "37905808", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}, {"acc": "PRJNA660305", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism, up-regulated colon inf…"}, {"acc": "PRJNA660966", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism and up-regulated colon…"}, {"acc": "PRJNA763023", "pmid": "41751912", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Dysbiosis of human gut microbiome in young-onset colorectal cancer"}]}, "huang t": {"display": "Huang T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1070846", "pmid": "38647334", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal metagenomic sequecing"}]}, "huang w": {"display": "Huang W", "group": false, "n_studies": 19, "studies": [{"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA781781", "pmid": "38169289", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of Lactobacillus plantarum P-8 on Growth Performance and Gut Microbiota of Weaned…"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA806510", "pmid": "40487637", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of Gut Microbiota Mediated Metformin Monotherapy Failure in Type 2 Diabetes Mellitus"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "huang we": {"display": "Huang WE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB19676", "pmid": "26512868", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of microbes attached to fuel cell electrodes"}]}, "huang x": {"display": "Huang X", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}, {"acc": "PRJNA471898", "pmid": "30397357", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The skin microbiome of DOCK8-deficient patients"}, {"acc": "PRJNA642893", "pmid": "33212154", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin microbiome from cutaneous T-cell lymphoma patients and healthy volunteers"}, {"acc": "PRJNA812695", "pmid": "37714338", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Metagenome"}]}, "huang y": {"display": "Huang Y", "group": false, "n_studies": 5, "studies": [{"acc": "PRJDB28401", "pmid": "37261381", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenome investigation of ocular microbiota of cataract patients with and without type…"}, {"acc": "PRJNA1052964", "pmid": "39034349", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA401977", "pmid": "41620634", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome from patients with gestational diabetes mellitus"}, {"acc": "PRJNA669352", "pmid": "33820946", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome assembly for sulfonamide subsistence and the transfer of genetic determinants"}, {"acc": "PRJNA669352", "pmid": "38366247", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome assembly for sulfonamide subsistence and the transfer of genetic determinants"}, {"acc": "PRJNA746290", "pmid": "35210415", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Circulating Microbiome in Myeloid Malignancy"}]}, "huang yj": {"display": "Huang YJ", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB6456", "pmid": "36779183", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA422434", "pmid": "36779183", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA48479", "pmid": "36779183", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "huang z": {"display": "Huang Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}]}, "hubar v": {"display": "Hubar V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA290380", "pmid": "30894435", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "hubbard atm": {"display": "Hubbard ATM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "34609275", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "hube b": {"display": "Hube B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573821", "pmid": "32919472", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Whole Meta-genome shotgun sequencing of stool samples from human treated with antibiotics"}]}, "huber c": {"display": "Huber C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB24753", "pmid": "31448292", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Neisseria meningitidis"}, {"acc": "PRJEB25228", "pmid": "31616669", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Cardiobacterium hominis"}, {"acc": "PRJEB57944", "pmid": "40182766", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Diagnosing endocarditis by metagenomics"}]}, "huber s": {"display": "Huber S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "hubner a": {"display": "Hübner A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}]}, "huda mn": {"display": "Huda MN", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB15633", "pmid": "35406036", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJEB6456", "pmid": "30258040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA436562", "pmid": "30258040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}]}, "hudalla h": {"display": "Hudalla H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "huddleston k": {"display": "Huddleston K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417283", "pmid": "29988506", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}]}, "hudgens cw": {"display": "Hudgens CW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "huelin p": {"display": "Huelin P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}]}, "huentelman mj": {"display": "Huentelman MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA695570", "pmid": "34442687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "huerlimann r": {"display": "Huerlimann R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA751712", "pmid": "35345612", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "To Probiotic or not to probiotic: using metagenomics to compare the gut microbiome of inf…"}, {"acc": "PRJNA751712", "pmid": "35796792", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "To Probiotic or not to probiotic: using metagenomics to compare the gut microbiome of inf…"}]}, "huerta-arellano v": {"display": "Huerta-Arellano V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "huerta-cepas j": {"display": "Huerta-Cepas J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB12357", "pmid": "27126044", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}, {"acc": "PRJEB46778", "pmid": "27126044", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "hueston c": {"display": "Hueston C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA678472", "pmid": "34407825", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Long-term persistence of crAss-like phage crAss001 in Bacteroides intestinalis cultures i…"}]}, "hueston cm": {"display": "Hueston CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352475", "pmid": "36420990", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "huey sl": {"display": "Huey SL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1445932", "pmid": "42669658", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of a complementary feeding intervention on the gut microbiota in 12-18-month- old…"}]}, "hug la": {"display": "Hug LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA321218", "pmid": "24137540", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}]}, "hugenholtz p": {"display": "Hugenholtz P", "group": false, "n_studies": 11, "studies": [{"acc": "PRJEB58634", "pmid": "40707831", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencin…"}, {"acc": "PRJNA1156595", "pmid": "39827146", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics: a new frontier for routine pathology testing of gastrointestinal pathogens"}, {"acc": "PRJNA1200893", "pmid": "41809988", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}, {"acc": "PRJNA313232", "pmid": "27388460", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteroidales group S24-7 population genome recovery"}, {"acc": "PRJNA348149", "pmid": "28360330", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA381379", "pmid": "29802288", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut metagenome the kakapo"}, {"acc": "PRJNA492716", "pmid": "31384000", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA544874", "pmid": "31928131", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome analysis of mice in association with graft-vs-host disease"}, {"acc": "PRJNA562766", "pmid": "33208745", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA725899", "pmid": "36747007", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of wild rodent colon, cecum and faeces"}, {"acc": "PRJNA907943", "pmid": "36949471", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Characterisation and isolation of novel host-associated Methanocorpusculum species from n…"}]}, "hugerth lw": {"display": "Hugerth LW", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37731", "pmid": "33208514", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "33816334", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "35553675", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "39015337", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "39160615", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "42203854", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB38528", "pmid": "42203854", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}]}, "hughes j": {"display": "Hughes J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "hughes me": {"display": "Hughes ME", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1295573", "pmid": "41760690", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The intestinal microbiome of patients with newly diagnosed invasive breast cancer and duc…"}]}, "hughes t": {"display": "Hughes T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA383868", "pmid": "28910633", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "30482830", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "32409670", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}]}, "hugho ea": {"display": "Hugho EA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73590", "pmid": "37111504", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}, {"acc": "PRJEB73590", "pmid": "38235427", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}]}, "hui dsc": {"display": "Hui DSC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA876804", "pmid": "36357381", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Human Metagenomic Metagenome"}]}, "huibner s": {"display": "Huibner S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA208535", "pmid": "40607829", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The daily dynamics of the vaginal microbiota before and after bacterial vaginosis"}]}, "huijse l": {"display": "Huijse L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "huletsky a": {"display": "Huletsky A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "hull jj": {"display": "Hull JJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "26966223", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "hultgren sj": {"display": "Hultgren SJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32631", "pmid": "40328944", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA400628", "pmid": "40328944", "pos": null, "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "Escherichia coli Genome sequencing and assembly"}]}, "hultman j": {"display": "Hultman J", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB32631", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA301903", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA384716", "pmid": "30250208", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA396794", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA532310", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut metagenome"}]}, "hummel s": {"display": "Hummel S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41353", "pmid": "33997698", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Mass burial genomics reveals outbreak of enteric paratyphoid fever in the Late Medieval t…"}]}, "humphrey g": {"display": "Humphrey G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}, {"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}]}, "humphrey jh": {"display": "Humphrey JH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "humphreys m": {"display": "Humphreys M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA348754", "pmid": "27939314", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}]}, "humphrys m": {"display": "Humphrys M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA774819", "pmid": "35695455", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Highly specialized carbohydrate metabolism capability in Bifidobacterium strain associate…"}]}, "hundeyin m": {"display": "Hundeyin M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}]}, "hung dt": {"display": "Hung DT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA623215", "pmid": "32349121", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing to evaluate massively multiplexed detection with Cas13"}]}, "hung ks": {"display": "Hung KS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1145565", "pmid": "39234544", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "WES of Taiwain Children with Enterovirus (EV) Infections"}]}, "hung w": {"display": "Hung W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858926", "pmid": "36687649", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}]}, "hunt c": {"display": "Hunt C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28369502", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "hunt rl": {"display": "Hunt RL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA483343", "pmid": "30305736", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "huntington kb": {"display": "Huntington KB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1198110", "pmid": "40439559", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Clinical infection by Francisella tularensis ssp. holarctica in stranded beluga whales fr…"}]}, "huo d": {"display": "Huo D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA597371", "pmid": "34193290", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal Selective Pressure and Coevolution Project Part 4 human placebo Metagenome"}, {"acc": "PRJNA602729", "pmid": "34079079", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}]}, "huq s": {"display": "Huq S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}, {"acc": "PRJNA506325", "pmid": "23102968", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Phages Raw sequence reads"}]}, "hur hg": {"display": "Hur HG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA506137", "pmid": "29858829", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "wastewater Metagenome"}]}, "hurst jh": {"display": "Hurst JH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "hurwitz b": {"display": "Hurwitz B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "40315414", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB70237", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "hurwitz bl": {"display": "Hurwitz BL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52774", "pmid": "38058765", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}]}, "huset ca": {"display": "Huset CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "36777525", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "huson dh": {"display": "Huson DH", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB10391", "pmid": "26369961", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of ciprofloxacin pertubation on the intestinal resistome and microbiota in two hea…"}, {"acc": "PRJEB12272", "pmid": "27984120", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A statistical test for the detection of inhomogeneity in metagenomic samples"}, {"acc": "PRJEB26596", "pmid": "27869789", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}, {"acc": "PRJEB27308", "pmid": "30974084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome metagenome analysis of stool samples from individuals with low and high saliva…"}]}, "hussain s": {"display": "Hussain S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}]}, "hussein jw": {"display": "Hussein JW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "33829128", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "hussein k": {"display": "Hussein K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA628604", "pmid": "32511695", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}]}, "hutchinson tf": {"display": "Hutchinson TF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130617", "pmid": "41505541", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}]}, "huttenhower c": {"display": "Huttenhower C", "group": false, "n_studies": 23, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}, {"acc": "PRJEB15371", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA231909", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA275349", "pmid": "28953883", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA328899", "pmid": "30661755", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA398089", "pmid": "35614211", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA48479", "pmid": "28953883", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA48479", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA504891", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "32427907", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA610982", "pmid": "33308267", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Determinants of S. aureus carriage in the developing infant nasal microbiome"}, {"acc": "PRJNA657818", "pmid": "33377127", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}, {"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "hutter s": {"display": "Hutter S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746290", "pmid": "35210415", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Circulating Microbiome in Myeloid Malignancy"}]}, "huttner a": {"display": "Huttner A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40995", "pmid": "34492446", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of antibiotic duration on the intestinal microbiota and resistome"}]}, "huttner b": {"display": "Huttner B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB33794", "pmid": "32185143", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Changes in Microbiota Profiles After Prolonged Frozen Storage of Stool Suspensions"}]}, "huttner bd": {"display": "Huttner BD", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB35816", "pmid": "32585945", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota of carriers of extended-spectrum beta-lactamase or carbapenemase-producing…"}, {"acc": "PRJEB40995", "pmid": "34492446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of antibiotic duration on the intestinal microbiota and resistome"}]}, "hutton aa": {"display": "Hutton AA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA390646", "pmid": "29242832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}]}, "hutton ek": {"display": "Hutton EK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA805248", "pmid": "36008821", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Targeted Capture of AMR in Preterm infants after probiotic exposure"}]}, "huus ke": {"display": "Huus KE", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46788", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB86954", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Integrating Metagenomics for Helminth Detection"}, {"acc": "PRJNA48479", "pmid": "41358671", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "huws sa": {"display": "Huws SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA158313", "pmid": "23251564", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Iberian lynx fecal Metagenome"}]}, "huybregts l": {"display": "Huybregts L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1113165", "pmid": "40102379", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}]}, "huynen ma": {"display": "Huynen MA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA856437", "pmid": "36171433", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cervicovaginal microbial communities and hrHPV infections"}, {"acc": "PRJNA856437", "pmid": "37731597", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cervicovaginal microbial communities and hrHPV infections"}, {"acc": "PRJNA856437", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cervicovaginal microbial communities and hrHPV infections"}, {"acc": "PRJNA888791", "pmid": "36171433", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Longitudinal profiling of the cervicovaginal microbiome"}, {"acc": "PRJNA888791", "pmid": "37731597", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Longitudinal profiling of the cervicovaginal microbiome"}, {"acc": "PRJNA888791", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Longitudinal profiling of the cervicovaginal microbiome"}]}, "huynh hq": {"display": "Huynh HQ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "huynh s": {"display": "Huynh S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA834762", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "38427700", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA837236", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "38427700", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA912682", "pmid": "38272215", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "38427700", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "39727415", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}]}, "huynh t": {"display": "Huynh T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}]}, "huys gr": {"display": "Huys GR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "hvas cl": {"display": "Hvas CL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA812583", "pmid": "36352460", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level metagenomics reveal microbial transfer from donor to infant after fecal micr…"}]}, "hwang g": {"display": "Hwang G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA930375", "pmid": "37264481", "pos": "last", "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Addition of cariogenic pathogens to complex oral microbiota drives significant changes in…"}]}, "hwang s": {"display": "Hwang S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB33013", "pmid": "36504822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB55713", "pmid": "36504822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Child gut microbiome"}]}, "hwu p": {"display": "Hwu P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "hyams j": {"display": "Hyams J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}]}, "hyde vr": {"display": "Hyde VR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1187541", "pmid": "39753133", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Raw metagenomics sequencing from human hippocampi."}]}, "hyoty h": {"display": "Hyöty H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445932", "pmid": "29297933", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}]}, "hyotylainen t": {"display": "Hyötyläinen T", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}, {"acc": "PRJNA231909", "pmid": "36195095", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA475246", "pmid": "35685890", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "iablokov sn": {"display": "Iablokov SN", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB11419", "pmid": "36032669", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJNA398089", "pmid": "36032669", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA400115", "pmid": "36032669", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}]}, "iacovelli r": {"display": "Iacovelli R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA643802", "pmid": "32859933", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "FMT for diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal…"}]}, "ianiro g": {"display": "Ianiro G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA300541", "pmid": "42312244", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA643802", "pmid": "32859933", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "FMT for diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal…"}]}, "ibanez-lligona m": {"display": "Ibañez-Lligoña M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": "first", "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "ibanez-sandin md": {"display": "Ibáñez-Sandín MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991269", "pmid": "38589361", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "ibarra v": {"display": "Ibarra V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819232", "pmid": "35618952", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Integrase Inhibitors on gut and oral microbiome"}]}, "ibekwe mu": {"display": "Ibekwe MU", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445932", "pmid": "29297933", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA445932", "pmid": "30121305", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}]}, "iber j": {"display": "Iber J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27927929", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "ibikounle m": {"display": "Ibikounlé M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "ibrahim a": {"display": "Ibrahim A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "ibrahim am": {"display": "Ibrahim AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "33829128", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "ibrahimi p": {"display": "Ibrahimi P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA916259", "pmid": "40140473", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}]}, "ichou f": {"display": "Ichou F", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB23292", "pmid": "29899081", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysbiosis, including decreased gut microbial richness (MGR) and composition modifications…"}, {"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "ide k": {"display": "Ide K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA692334", "pmid": "34641955", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Recovery of high-quality assembled genomes via single-cell genome-guided binning of metag…"}]}, "iebba v": {"display": "Iebba V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "ihekweazu c": {"display": "Ihekweazu C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "iida t": {"display": "Iida T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB10675", "pmid": "36376441", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "International collaborative studies on the prevention, diagnosis, and drug discovery for…"}, {"acc": "PRJNA30563", "pmid": "18976571", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High throughput sequence to detect the presence of a pathogenic microbe in a clinical hum…"}]}, "iijima h": {"display": "Iijima H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "ijaz uz": {"display": "Ijaz UZ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8179", "pmid": "25586220", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Synthetic community metagenomes study"}]}, "ikeda k": {"display": "Ikeda K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "iketani s": {"display": "Iketani S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29970463", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "ilhan ze": {"display": "Ilhan ZE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB17694", "pmid": "27912057", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Di…"}]}, "iliadis si": {"display": "Iliadis SI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62678", "pmid": "31641004", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "BASIC: Biology, Affect, Stress, Imaging and Cognition in pregnancy"}]}, "ilkayeva o": {"display": "Ilkayeva O", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB38446", "pmid": "34001614", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiota (16S rDNA sequencing) and microbiome (shotgun sequencing) data of a pig model…"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}]}, "ilmberger n": {"display": "Ilmberger N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA240141", "pmid": "25208077", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "ilonen j": {"display": "Ilonen J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA475246", "pmid": "35685890", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "ilyumzhinova r": {"display": "Ilyumzhinova R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895372", "pmid": "38303501", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiome function and neurodevelopment in Black infants: Vitamin B12 biosynthesis emerg…"}]}, "imam n": {"display": "Imam N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1222487", "pmid": "42293161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome signatures and reduced Faecalibacterium and Roseburia in infants with earl…"}]}, "imamovic l": {"display": "Imamovic L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573821", "pmid": "32919472", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Whole Meta-genome shotgun sequencing of stool samples from human treated with antibiotics"}]}, "imanishi t": {"display": "Imanishi T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB8125", "pmid": "31549291", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metaviromic analyses on crane fecal samples"}]}, "imbe k": {"display": "Imbe K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "imbery j": {"display": "Imbery J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA348754", "pmid": "28885569", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}]}, "immel a": {"display": "Immel A", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}, {"acc": "PRJEB36413", "pmid": "32884081", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Yersinia pestis strains from Latvia show depletion of the pla virulence gene at the end o…"}, {"acc": "PRJEB41353", "pmid": "33997698", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Mass burial genomics reveals outbreak of enteric paratyphoid fever in the Late Medieval t…"}, {"acc": "PRJEB42185", "pmid": "34192537", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}]}, "imrul hasan m": {"display": "Imrul Hasan M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39143045", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "in sa": {"display": "In SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87348", "pmid": "40210629", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "VLP metagenome of Korean gut"}]}, "indenbirken d": {"display": "Indenbirken D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB15376", "pmid": "29067007", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome, metatranscriptome and exo-proteome analyses identify molecular keys and main…"}, {"acc": "PRJEB40662", "pmid": "34675897", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Deep (Meta)genomics and (Meta)transcriptome Analyses of Fungal and Bacteria Consortia Fro…"}]}, "indugu n": {"display": "Indugu N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1088536", "pmid": "39030654", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of dietary zinc on the gut microbiome and resistome of the gestating cow and neon…"}]}, "infante-vilamil s": {"display": "Infante-Vilamil S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA751712", "pmid": "35345612", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "To Probiotic or not to probiotic: using metagenomics to compare the gut microbiome of inf…"}, {"acc": "PRJNA751712", "pmid": "35796792", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "To Probiotic or not to probiotic: using metagenomics to compare the gut microbiome of inf…"}]}, "ingebrigtsen d": {"display": "Ingebrigtsen D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA412411", "pmid": "34163067", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}]}, "ingle dj": {"display": "Ingle DJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "ingletto l": {"display": "Ingletto L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1088476", "pmid": "40321713", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Cameroonian blackflies (Diptera: Simuliidae) harbour a plethora of (RNA) viruses"}]}, "iniguez m": {"display": "Íñiguez M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819232", "pmid": "35618952", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Integrase Inhibitors on gut and oral microbiome"}]}, "inman ck": {"display": "Inman CK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130109", "pmid": "39081889", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome study"}]}, "inman j": {"display": "Inman J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA383868", "pmid": "28910633", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}]}, "inman jm": {"display": "Inman JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA383868", "pmid": "30482830", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}]}, "innamorati c": {"display": "Innamorati C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}]}, "inohara h": {"display": "Inohara H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "inoue i": {"display": "Inoue I", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB15258", "pmid": "38265980", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of 7,000 to 5,500 years old coprolites excavated from the Torihama s…"}, {"acc": "PRJEB15334", "pmid": "32994538", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Radcliffe dental calculus"}]}, "inoue j": {"display": "Inoue J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15334", "pmid": "32994538", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Radcliffe dental calculus"}]}, "inoue t": {"display": "Inoue T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "inskip s": {"display": "Inskip S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "ionescu d": {"display": "Ionescu D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884026", "pmid": "36724220", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic investigation of lake Issyk-Kul, Kyrgyzstan"}]}, "ip kl": {"display": "Ip KL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}]}, "iqbal n": {"display": "Iqbal N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "iraeta-orbegozo m": {"display": "Iraeta-Orbegozo M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "iriarte e": {"display": "Iriarte E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9783", "pmid": "26351665", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing Chalcolithic human remains from El Portalón, Spain"}]}, "iribarren k": {"display": "Iribarren K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "irie j": {"display": "Irie J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "irie t": {"display": "Irie T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "irlinger f": {"display": "Irlinger F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6314", "pmid": "25496341", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Construction of a dairy microbial genome catalog opens new perspectives for the metagenom…"}]}, "iruolagbe c": {"display": "Iruolagbe C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "irwin ad": {"display": "Irwin AD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893826", "pmid": "38622998", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Culture-independent long read metagenomic diagnostics for genomic surveillance and infect…"}]}, "irwin dm": {"display": "Irwin DM", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA356809", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "the gut metagenome of ginat pandas , bears and carnivores Raw sequence reads"}, {"acc": "PRJNA358755", "pmid": "35568757", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "wild and captive gut Raw sequence reads"}, {"acc": "PRJNA702770", "pmid": "33676490", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "gut microbiomes of dogs and wolves"}, {"acc": "PRJNA774076", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Gut metagenome of bamboo rats"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "isa p": {"display": "Isa P", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA171119", "pmid": "20976137", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}, {"acc": "PRJNA592261", "pmid": "32788688", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "35196791", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "36650178", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}]}, "isah s": {"display": "Isah S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273078", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Noma oral microbiome raw sequence reads"}]}, "isanaka s": {"display": "Isanaka S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA739008", "pmid": "37866373", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Effect of amoxicillin prophylaxis on gut microbiome and resistome for severe acute malnut…"}]}, "isern s": {"display": "Isern S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "isganaitis e": {"display": "Isganaitis E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019702", "pmid": "39043677", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}]}, "ishida t": {"display": "Ishida T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11203", "pmid": "34069916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Taxonomic and gene category analysis of subgingival plaques with and without periodontal…"}]}, "ishihara k": {"display": "Ishihara K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11203", "pmid": "34069916", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Taxonomic and gene category analysis of subgingival plaques with and without periodontal…"}]}, "ishii a": {"display": "Ishii A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB3158", "pmid": "25381053", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shrew fecal metagenome"}]}, "ishii m": {"display": "Ishii M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "isidean sd": {"display": "Isidean SD", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA698223", "pmid": "36470885", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "TD Cusco travelers study"}, {"acc": "PRJNA945408", "pmid": "38085102", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prev…"}]}, "isidro j": {"display": "Isidro J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "35750157", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "36131032", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "islam ma": {"display": "Islam MA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA706606", "pmid": "36416733", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of Water Chlorination of Children's Gut Microbiomes in Bangladesh"}, {"acc": "PRJNA726052", "pmid": "35422497", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effects of drinking water chlorination on childrens intestinal flora and resistomes in Dh…"}]}, "islam mm": {"display": "Islam MM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}]}, "islam ms": {"display": "Islam MS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "islam mt": {"display": "Islam MT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}]}, "islam zf": {"display": "Islam ZF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA630822", "pmid": "34732568", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}]}, "islek a": {"display": "Islek A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "ismaeel a": {"display": "Ismaeel A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1201756", "pmid": "37940330", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome Metagenome"}]}, "ismaiah mj": {"display": "Ismaiah MJ", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1151597", "pmid": "40405038", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Probiotics mixture suppresses MASLD-associated hepatocellular carcinoma"}, {"acc": "PRJNA1229795", "pmid": "40691217", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Theabrownin, in combination with Zearalenone, suppressed colitis-associated colorectal ca…"}, {"acc": "PRJNA1366117", "pmid": "39489290", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The Role of Amino Acid-Derived Metabolites in Non-alcoholic fatty liver disease (NAFLD) D…"}, {"acc": "PRJNA1366117", "pmid": "40015656", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The Role of Amino Acid-Derived Metabolites in Non-alcoholic fatty liver disease (NAFLD) D…"}, {"acc": "PRJNA1367284", "pmid": "38575146", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Probiotics mixture suppresses diet-induced MASLD: Fecal metagenomics of mice sample"}, {"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}]}, "isnard r": {"display": "Isnard R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "isolauri e": {"display": "Isolauri E", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB62848", "pmid": "38010080", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, moderate and late preterm infants, probiotic and prebiotic"}, {"acc": "PRJNA384716", "pmid": "30250208", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "israel s": {"display": "Israel S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1502892", "pmid": "40490486", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Associations between antibiotic exposure intensity, intestinal microbiome perturbations,…"}]}, "israeli d": {"display": "Israeli D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "iszatt n": {"display": "Iszatt N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29078", "pmid": "30352933", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJEB29078", "pmid": "30813950", "pos": "first", "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}]}, "itahashi k": {"display": "Itahashi K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "ito k": {"display": "Ito K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB3158", "pmid": "25381053", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shrew fecal metagenome"}]}, "ito s": {"display": "Ito S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "ito y": {"display": "Ito Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB10705", "pmid": "34859110", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Blood microbiome in febrile patients"}, {"acc": "PRJDB10711", "pmid": "34090359", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics for pathogens detection from patients with fever of unknown origin"}]}, "itoh h": {"display": "Itoh H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "itoi t": {"display": "Itoi T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "iturriza-gomara m": {"display": "Iturriza-Gómara M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62041", "pmid": "37980461", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rotavirus Vaccine Immunogenicity (RoVI) shotgun metagenomics"}]}, "ivanov iv": {"display": "Ivanov IV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB2778", "pmid": "22546241", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}, {"acc": "PRJEB2778", "pmid": "33353204", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}]}, "ivey kl": {"display": "Ivey KL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA503909", "pmid": "33074097", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}]}, "iwai s": {"display": "Iwai S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "34666677", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": "36220843", "pos": "last", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": "37938270", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "iyer sp": {"display": "Iyer SP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "izarzugaza jm": {"display": "Izarzugaza JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12636", "pmid": "26818667", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of P. acnes levels in NGS data from cancer samples"}]}, "izawa k": {"display": "Izawa K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11203", "pmid": "34069916", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Taxonomic and gene category analysis of subgingival plaques with and without periodontal…"}]}, "izbicki jr": {"display": "Izbicki JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "izutsu k": {"display": "Izutsu K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA30563", "pmid": "18976571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High throughput sequence to detect the presence of a pathogenic microbe in a clinical hum…"}]}, "j hall l": {"display": "J Hall L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1112760", "pmid": "39679616", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic signatures of early life brain damage"}]}, "jaber h": {"display": "Jaber H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA610982", "pmid": "33308267", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Determinants of S. aureus carriage in the developing infant nasal microbiome"}]}, "jabri b": {"display": "Jabri B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701961", "pmid": "37069665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA701961", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "jacksch s": {"display": "Jacksch S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47581", "pmid": "32423128", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic Analysis of Regularly Microwave-Treated and Untreated Domestic Kitchen Sponges"}]}, "jackson bp": {"display": "Jackson BP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "30135504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "jackson c": {"display": "Jackson C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1320699", "pmid": "42088498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "16S sequencing of infant stool Metagenome"}]}, "jackson jr": {"display": "Jackson JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB20308", "pmid": "29669589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Similarity of the dog and human gut microbiomes in gene content and response to diet"}]}, "jackson m": {"display": "Jackson M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "jackson ma": {"display": "Jackson MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28369502", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "jacobs km": {"display": "Jacobs KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019702", "pmid": "39043677", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "39265573", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}]}, "jacobs ma": {"display": "Jacobs MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA314903", "pmid": "24178246", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Pseudomonas Aeruginosa Early CF Adaptive Changes"}]}, "jacobson d": {"display": "Jacobson D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}]}, "jacobson lp": {"display": "Jacobson LP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "jacoby c": {"display": "Jacoby C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "41118772", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "jacquelot n": {"display": "Jacquelot N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "jagare l": {"display": "Jagare L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62817", "pmid": "38868903", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome encoded purine and amino acid pathways present prospective biomarkers for…"}]}, "jager c": {"display": "Jäger C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "jager d": {"display": "Jäger D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "jahn mt": {"display": "Jahn MT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}]}, "jain md": {"display": "Jain MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "jain p": {"display": "Jain P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "jain r": {"display": "Jain R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "jain s": {"display": "Jain S", "group": false, "n_studies": 11, "studies": [{"acc": "PRJEB14964", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Maternal Secretor Status and Microbiota Composition"}, {"acc": "PRJEB27914", "pmid": "41751912", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Six-week endurance exercise alters gut metagenome that is not reflected in systemic metab…"}, {"acc": "PRJEB29078", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA307231", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA32089", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}, {"acc": "PRJNA322188", "pmid": "41751912", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA445932", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA541981", "pmid": "41751912", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome in melanoma patients"}, {"acc": "PRJNA565546", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "fecal sample Raw sequence reads"}, {"acc": "PRJNA763023", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Dysbiosis of human gut microbiome in young-onset colorectal cancer"}, {"acc": "PRJNA912638", "pmid": "37213047", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MICROBIOME IN AGING GUT AND BRAIN (MiaGB) STUDY"}]}, "jakob w": {"display": "Jakob W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55714", "pmid": "37397142", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analyses of the intestinal microbiome from neonates in the MIS BAIR trial"}, {"acc": "PRJEB55714", "pmid": "41853385", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analyses of the intestinal microbiome from neonates in the MIS BAIR trial"}]}, "jakobsen th": {"display": "Jakobsen TH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396840", "pmid": "28979798", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomic and metatranscriptomic analysis of saliva reveals disease-associated microbio…"}]}, "jakobsson m": {"display": "Jakobsson M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB9783", "pmid": "26351665", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing Chalcolithic human remains from El Portalón, Spain"}, {"acc": "PRJNA930765", "pmid": "36869137", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia felis reads and MAG recovered from a child who lived in southern Africa 2000 y…"}]}, "jalanka j": {"display": "Jalanka J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA446038", "pmid": "30526683", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}]}, "jallow at": {"display": "Jallow AT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28671", "pmid": "34972822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A_novel_nano_iron_supplement__IHAT__to_safely_combact_iron_deficiency_and_anemia"}]}, "jamal ma": {"display": "Jamal MA", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}, {"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "james k": {"display": "James K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}]}, "james l": {"display": "James L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188190", "pmid": "37113001", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two…"}]}, "james m": {"display": "James M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078280", "pmid": "38405928", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Quantifying forms and functions of intestinal bile acid pools in mice"}]}, "jamme s": {"display": "Jamme S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB20595", "pmid": "30065706", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hepatic brucelloma studied by next generation sequencing"}]}, "janecko n": {"display": "Janecko N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21259", "pmid": "41144256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}]}, "janjic n": {"display": "Janjic N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "jankauskas r": {"display": "Jankauskas R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37508", "pmid": "32528126", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "A treponemal genome from an historic plague victim supports recent emergence of yaws and…"}, {"acc": "PRJNA348754", "pmid": "27939314", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}]}, "jankipersadsing sa": {"display": "Jankipersadsing SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "jannat k": {"display": "Jannat K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644725", "pmid": "32958861", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}]}, "janofsky e": {"display": "Janofsky E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA774819", "pmid": "35695455", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Highly specialized carbohydrate metabolism capability in Bifidobacterium strain associate…"}]}, "jansen d": {"display": "Jansen D", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB29065", "pmid": "37158607", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Daily sampling reveals personalized diet-microbiome associations"}, {"acc": "PRJNA290380", "pmid": "37158607", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA693793", "pmid": "35320047", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BaBel Infant Gut Virome Raw Data"}, {"acc": "PRJNA804384", "pmid": "37052201", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Inflammatory bowel disease patients undergoing biological therapy"}]}, "janson c": {"display": "Janson C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "janssen ph": {"display": "Janssen PH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "janssen s": {"display": "Janssen S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB17694", "pmid": "27912057", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Di…"}, {"acc": "PRJEB29078", "pmid": "30813950", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}]}, "jantscher-krenn e": {"display": "Jantscher-Krenn E", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB32631", "pmid": "38291346", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "38291346", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB77729", "pmid": "39714161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "First-Year Dynamics of the Microbiome in Infants’ Oral and Gastrointestinal Systems"}, {"acc": "PRJNA352475", "pmid": "38291346", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA475246", "pmid": "38291346", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA497734", "pmid": "38291346", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA994433", "pmid": "38291346", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Variability of Bifidobacterium Species in the Infant Gut is Independent of M…"}]}, "januszkiewicz k": {"display": "Januszkiewicz K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "janzen a": {"display": "Janzen A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA381395", "pmid": "28843021", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut and nasal microbiome in Parkinson''s disease"}]}, "jarmukhanov z": {"display": "Jarmukhanov Z", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1217583", "pmid": "40299456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic predictors of childhood obesity, cross-talk with maternal microflora"}, {"acc": "PRJNA949528", "pmid": "37308527", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}, {"acc": "PRJNA949528", "pmid": "40299456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}, {"acc": "PRJNA949528", "pmid": "40399402", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}, {"acc": "PRJNA973824", "pmid": "40399402", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Immunoregulatory role of gut microbiome and mycobiome in aging"}]}, "jarmusch ak": {"display": "Jarmusch AK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}]}, "jaroudi d": {"display": "Jaroudi D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "jarquin-diaz vh": {"display": "Jarquín-Díaz VH", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB15633", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJNA1262354", "pmid": "41603547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMBARK - Establishing a Monitoring Baseline for Antimicrobial Resistance in Key environme…"}, {"acc": "PRJNA284162", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "STL Infant Twins Microbiome"}, {"acc": "PRJNA301903", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA379120", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA497734", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "jarrett rn": {"display": "Jarrett RN", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1173239", "pmid": "40763731", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Amino acid competition shapes Acinetobacter baumannii gut carriage"}]}, "jarvinen km": {"display": "Järvinen KM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1290379", "pmid": "41593042", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool"}, {"acc": "PRJNA1320699", "pmid": "42088498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "16S sequencing of infant stool Metagenome"}]}, "jarvis ma": {"display": "Jarvis MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "jarysz r": {"display": "Jarysz R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "jaspan hb": {"display": "Jaspan HB", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1143669", "pmid": "39707483", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of neonates exposed to HIV"}, {"acc": "PRJNA526942", "pmid": "33137401", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "uncultured crAssphage strain:ZA | isolates :M186D4, C0521BW15,C0526BW15, C0521BD4, and C0…"}]}, "jassem a": {"display": "Jassem A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1092681", "pmid": "38696336", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Validation of an automated, end-to-end metagenomic sequencing assay for agnostic detectio…"}]}, "jaswal k": {"display": "Jaswal K", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1173239", "pmid": "40763731", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Amino acid competition shapes Acinetobacter baumannii gut carriage"}]}, "jauhal a": {"display": "Jauhal A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21259", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}]}, "jaumdally s": {"display": "Jaumdally S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA526942", "pmid": "33137401", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "uncultured crAssphage strain:ZA | isolates :M186D4, C0521BW15,C0526BW15, C0521BD4, and C0…"}]}, "jauneikaite e": {"display": "Jauneikaite E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60914", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Roles of gut microbiota-mediated nutrient competition and metabolite inhibition in the in…"}]}, "jauregui a": {"display": "Jauregui A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "javier mc": {"display": "Javier MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": "40631735", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "javornik cregeen s": {"display": "Javornik Cregeen S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1195144", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "javornik cregeen sj": {"display": "Javornik Cregeen SJ", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1084251", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tryptophan metabolites in fecal samples from healthy humans"}, {"acc": "PRJNA1195142", "pmid": "39282326", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA416160", "pmid": "39856391", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "The Environmental Determinants of Diabetes in the Young (TEDDY) Parent Study"}]}, "javornik sc": {"display": "Javornik SC", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "jawahar j": {"display": "Jawahar J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "jayanama k": {"display": "Jayanama K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA766776", "pmid": "35909623", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut Microbiome in HIV patients"}]}, "jayasinghe tn": {"display": "Jayasinghe TN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA637785", "pmid": "33346848", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA637785", "pmid": "33985595", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}]}, "jeanrenaud acsn": {"display": "Jeanrenaud ACSN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "jeanson tl": {"display": "Jeanson TL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "jedraszak g": {"display": "Jedraszak G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1104421", "pmid": "39078043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Serum Bile Acids profiles are altered without change of the Gut Microbiota composition fo…"}]}, "jeffery ib": {"display": "Jeffery IB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42304", "pmid": "31843589", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differences in Fecal Microbiomes and Metabolomes of People With vs Without Irritable Bowe…"}]}, "jeffrey lc": {"display": "Jeffrey LC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130617", "pmid": "41505541", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}]}, "jegou s": {"display": "Jegou S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52431", "pmid": "36971547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In Vitro Modelling of Oral Microbial Invasion in the Human Colon"}]}, "jelinski m": {"display": "Jelinski M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1279254", "pmid": "41562608", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of synovial joint fluid collected from feedlot cattle. Raw sequenc…"}]}, "jenior ml": {"display": "Jenior ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "jenkins b": {"display": "Jenkins B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "jenkins c": {"display": "Jenkins C", "group": false, "n_studies": 40, "studies": [{"acc": "PRJEB1220", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB22207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJEB32135", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9576", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA188481", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA221723", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA305507", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA319574", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA322188", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA328899", "pmid": "38172624", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA398089", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA436562", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA485056", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA489090", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA504891", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA510445", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA542703", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA557731", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA633576", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA715601", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA853174", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "jenkins tp": {"display": "Jenkins TP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "jenq rr": {"display": "Jenq RR", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}, {"acc": "PRJNA259179", "pmid": "25337874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Studies of intestinal microbiome and infection resistance"}, {"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}, {"acc": "PRJNA734860", "pmid": "34633706", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA734860", "pmid": "35477306", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": "last", "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "jensen nl": {"display": "Jensen NL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28870221", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "jensen rh": {"display": "Jensen RH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA789782", "pmid": "34970712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of bat coronaviruses from Eswatini"}]}, "jensen sr": {"display": "Jensen SR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62690", "pmid": "37513505", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, 5-HMO supplemented formula vs. control formula vs. breastfed"}]}, "jensen tbn": {"display": "Jensen TBN", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52550", "pmid": "36697964", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of samples suspected of featuring cable bacteria genomic DNA with s…"}, {"acc": "PRJEB58634", "pmid": "40707831", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencin…"}]}, "jensen v": {"display": "Jensen V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "jensen vb": {"display": "Jensen VB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "jeoffreys n": {"display": "Jeoffreys N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "jeong c": {"display": "Jeong C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}]}, "jepsen jrm": {"display": "Jepsen JRM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA916259", "pmid": "40140473", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}]}, "jeraldo p": {"display": "Jeraldo P", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA312222", "pmid": "27303377", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genome reconstructions from human gut metagenomes"}, {"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "jeraldo pr": {"display": "Jeraldo PR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA518922", "pmid": "31577814", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metegenomic sequencing of blood from patients with vector-borne diseases"}]}, "jerasi j": {"display": "Jerasi J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "jere kc": {"display": "Jere KC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62041", "pmid": "37980461", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rotavirus Vaccine Immunogenicity (RoVI) shotgun metagenomics"}]}, "jermain md": {"display": "Jermain MD", "group": false, "n_studies": 40, "studies": [{"acc": "PRJEB1220", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB22207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJEB32135", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9576", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA188481", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA221723", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA305507", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA319574", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA322188", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA328899", "pmid": "38172624", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA398089", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA436562", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA485056", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA489090", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA504891", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA510445", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA542703", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA557731", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA633576", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA715601", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA853174", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "jernberg t": {"display": "Jernberg T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "jerome kr": {"display": "Jerome KR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA338014", "pmid": "26941149", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "27795347", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "27974546", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28100494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28209840", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28254976", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28287142", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28379561", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28711653", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28838146", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28870221", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29281620", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29554870", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29898986", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30305383", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30383234", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA907865", "pmid": "37486790", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhinovirus raw sequence reads"}]}, "jerzsele a": {"display": "Jerzsele Á", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644779", "pmid": "33384459", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "yogurt and kefir seed culture sequencing"}]}, "jespersen ml": {"display": "Jespersen ML", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB46943", "pmid": "35181661", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA812583", "pmid": "36352460", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level metagenomics reveal microbial transfer from donor to infant after fecal micr…"}]}, "jessen le": {"display": "Jessen LE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40396485", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}]}, "jesudasen sj": {"display": "Jesudasen SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "jetten msm": {"display": "Jetten MSM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1215350", "pmid": "40600797", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "16S rRNA sequences of sediment incubations from a eutrophic marine lake"}]}, "jeurink p": {"display": "Jeurink P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA798191", "pmid": "36038938", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bamboo microbiota study in infants"}]}, "jewell c": {"display": "Jewell C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63570", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Klebsiella_transmission_and_immunity_on_Chatinkha_nursery__Neo_TRACK_"}]}, "jex a": {"display": "Jex A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39143045", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}, {"acc": "PRJNA1081952", "pmid": "39367018", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "jha ar": {"display": "Jha AR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49206", "pmid": "30439937", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}]}, "jha bk": {"display": "Jha BK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746290", "pmid": "35210415", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Circulating Microbiome in Myeloid Malignancy"}]}, "jha r": {"display": "Jha R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019500", "pmid": null, "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}]}, "jhingran a": {"display": "Jhingran A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "ji b": {"display": "Ji B", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB6456", "pmid": "33753486", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA725613", "pmid": "34307461", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "colorectal gut microbiota"}]}, "ji g": {"display": "Ji G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "ji l": {"display": "Ji L", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1005597", "pmid": "37896845", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "feces metagenome Metagenome"}, {"acc": "PRJNA973819", "pmid": "38188910", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Pathogenetic characterization of a Micrococcus luteus strain isolated from an infant"}, {"acc": "PRJNA994670", "pmid": "39242698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial community characterization and molecular resistance monitoring in geriatric int…"}]}, "ji p": {"display": "Ji P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA695070", "pmid": "38818221", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Transmission and formation of microbiota in the ealry life"}]}, "ji q": {"display": "Ji Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB39536", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Large-scale single-cell long-read genomics enables high-resolution microbiome profiling (…"}]}, "ji zm": {"display": "Ji ZM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA784757", "pmid": "35902819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "The Diagnosis Performance of Mycobacterium Tuberculosis Complex by Metagenomic Next-gener…"}]}, "jia h": {"display": "Jia H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA633381", "pmid": "33662387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "IgA deficiency microbiota"}]}, "jia p": {"display": "Jia P", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB59277", "pmid": "37009508", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "PICU mngs PCP"}, {"acc": "PRJEB73551", "pmid": "38912204", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "PICU cases"}, {"acc": "PRJNA1081790", "pmid": "38838490", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Dongkemadi glacier"}]}, "jia w": {"display": "Jia W", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA703757", "pmid": "37673036", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}, {"acc": "PRJNA728908", "pmid": "35675435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of baseline individuals in a 4.6-year non-alcoholic fatty liver disease pr…"}]}, "jia x": {"display": "Jia X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}]}, "jia z": {"display": "Jia Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1256929", "pmid": "42237168", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Intestinal flora of piglets"}]}, "jian c": {"display": "Jian C", "group": false, "n_studies": 11, "studies": [{"acc": "PRJEB32631", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB51728", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB6456", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA322188", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA352475", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA473126", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA549787", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA595749", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}, {"acc": "PRJNA898628", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "PINGU Fecal samples Metagenome"}]}, "jiang b": {"display": "Jiang B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "26966223", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "jiang c": {"display": "Jiang C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58634", "pmid": "40707831", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencin…"}]}, "jiang d": {"display": "Jiang D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746290", "pmid": "35210415", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Circulating Microbiome in Myeloid Malignancy"}]}, "jiang f": {"display": "Jiang F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA427478", "pmid": "30107526", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pomacea canaliculata isolate:SZHN2017 Genome sequencing and assembly"}]}, "jiang fj": {"display": "Jiang FJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA312041", "pmid": "27226242", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human fecal raw sequence reads"}]}, "jiang h": {"display": "Jiang H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA752888", "pmid": "39509330", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Longitudinal saliva bacteriome and early childhood caries"}]}, "jiang j": {"display": "Jiang J", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB46943", "pmid": "41387423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "jiang l": {"display": "Jiang L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6456", "pmid": "35768643", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "jiang m": {"display": "Jiang M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA973819", "pmid": "38188910", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Pathogenetic characterization of a Micrococcus luteus strain isolated from an infant"}]}, "jiang q": {"display": "Jiang Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}]}, "jiang s": {"display": "Jiang S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1106097", "pmid": "41411653", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Leuconostoc citreum enhances the colonization ability of Lactiplantibacillus plantarum in…"}, {"acc": "PRJNA597371", "pmid": "34193290", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal Selective Pressure and Coevolution Project Part 4 human placebo Metagenome"}, {"acc": "PRJNA602729", "pmid": "37905808", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}]}, "jiang w": {"display": "Jiang W", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1052964", "pmid": "39034349", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA1425751", "pmid": "41994268", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome"}, {"acc": "PRJNA497734", "pmid": "39745374", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA633324", "pmid": "33751816", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Comparative microbial antibiotic resistome between urban and deep forest environments"}]}, "jiang x": {"display": "Jiang X", "group": false, "n_studies": 40, "studies": [{"acc": "PRJEB1220", "pmid": "38172624", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB22207", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJEB32135", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9576", "pmid": "38172624", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA188481", "pmid": "38172624", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA221723", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38172624", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA305507", "pmid": "38172624", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA319574", "pmid": "38172624", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA322188", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA328899", "pmid": "38172624", "pos": "last", "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38172624", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA398089", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA436562", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA485056", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA489090", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA504891", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "41118772", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA510445", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA542703", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA544527", "pmid": "38172624", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA557731", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA633576", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA715601", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA853174", "pmid": "38172624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "jiang y": {"display": "Jiang Y", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1090034", "pmid": "39706182", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}, {"acc": "PRJNA1170175", "pmid": "40248366", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Vaginal Virome of Healthy Women and Patients with Vaginitis"}, {"acc": "PRJNA1402009", "pmid": "41726387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "faeces of British shorthair Raw sequence reads"}, {"acc": "PRJNA602729", "pmid": "40158141", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}, {"acc": "PRJNA637785", "pmid": "33346848", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA637785", "pmid": "33985595", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}]}, "jiang z": {"display": "Jiang Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1002114", "pmid": "37823665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Direct prediction of carbapenem-resistance for Pseudomonas aeruginosa by whole genome seq…"}]}, "jiao j": {"display": "Jiao J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA656389", "pmid": "38365259", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of the digestive tract of buffalo"}, {"acc": "PRJNA657455", "pmid": "38365259", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}, {"acc": "PRJNA734860", "pmid": "32258950", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA734860", "pmid": "34633706", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}]}, "jie s": {"display": "Jie S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "jie z": {"display": "Jie Z", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB15111", "pmid": "26932197", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "jimenez-hernandez n": {"display": "Jiménez-Hernández N", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB39661", "pmid": "41513932", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}, {"acc": "PRJEB62571", "pmid": "41513932", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}]}, "jimenez-lopez b": {"display": "Jiménez-López B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1260751", "pmid": "41536238", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal Obesity Alters Human Milk Oligosaccharides Content and Promotes Early Acquisitio…"}]}, "jin c": {"display": "Jin C", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB6456", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB97976", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome maturation during weaning"}, {"acc": "PRJEB97980", "pmid": "42203770", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential impact of doxycycline treatment on antimicrobial resistance genes in the enteri…"}, {"acc": "PRJEB98012", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Creeping Fat"}, {"acc": "PRJEB98069", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Distinct Microbial and Resistome Signatures Differentiate Healthy and Inflamed Ileal Pouc…"}, {"acc": "PRJNA290380", "pmid": "38193687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA776087", "pmid": "36973820", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}]}, "jin d": {"display": "Jin D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA349463", "pmid": "28915922", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Urban vs. Rural China Microbiome"}]}, "jin g": {"display": "Jin G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA719915", "pmid": "34465850", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tumor microbiome contributes to an aggressive phenotype in the basal-like subtype of panc…"}]}, "jin h": {"display": "Jin H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1065277", "pmid": "39268487", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal factors are more capable of influencing the structure of infant gut microbes and…"}]}, "jin j": {"display": "Jin J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA48479", "pmid": "38882493", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "jin lm": {"display": "Jin LM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB40947", "pmid": "38745649", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Evaluation of the effect of Fangyu acid lowering granules on improving Hyperuricemia (PRJ…"}]}, "jin q": {"display": "Jin Q", "group": false, "n_studies": 3, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}, {"acc": "PRJNA580164", "pmid": "32552447", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome Raw sequence reads"}, {"acc": "PRJNA702770", "pmid": "33676490", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "gut microbiomes of dogs and wolves"}]}, "jin s": {"display": "Jin S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1307628", "pmid": "41461922", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbial oral-gut translocation in advanced chronic liver disease is linked to exacerbat…"}, {"acc": "PRJNA1464060", "pmid": "42293186", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Efficacy of Bifidobacterium lactis BLa80 in Preventing Early Childhood Eczema and Respira…"}]}, "jin t": {"display": "Jin T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}]}, "jin w": {"display": "Jin W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}]}, "jin x": {"display": "Jin X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": null, "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "jin y": {"display": "Jin Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA474601", "pmid": "29988510", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Loss of intestinal microbes in cholecystectomy patients"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "jin z": {"display": "Jin Z", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1338803", "pmid": "41421358", "pos": null, "reason_code": "host_synthetic", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of faecal fermentation in vitro"}, {"acc": "PRJNA422434", "pmid": "41421358", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "jinfa y": {"display": "Jinfa Y", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB6456", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA475246", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA486782", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA510445", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA630999", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}]}, "jing l": {"display": "Jing L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB28401", "pmid": "37261381", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenome investigation of ocular microbiota of cataract patients with and without type…"}, {"acc": "PRJNA338014", "pmid": "28287142", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30383234", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "jirapanjawat t": {"display": "Jirapanjawat T", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1130617", "pmid": "41505541", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA630822", "pmid": "34732568", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "jo jh": {"display": "Jo JH", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA604820", "pmid": "34936382", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin metagenome from antibiotics treated healthy human subjects"}, {"acc": "PRJNA642893", "pmid": "33212154", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin microbiome from cutaneous T-cell lymphoma patients and healthy volunteers"}]}, "joao al": {"display": "João AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "jobard m": {"display": "Jobard M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1121295", "pmid": "38964511", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FEDEX Study Fecal Metagenomes"}]}, "joglekar p": {"display": "Joglekar P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46333", "pmid": "37054678", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "johannessen sc": {"display": "Johannessen SC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629517", "pmid": "34145447", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "DFO - beads in situ microcosms Raw sequence reads"}]}, "johansen j": {"display": "Johansen J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46943", "pmid": "35181661", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}]}, "johansen pl": {"display": "Johansen PL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB84944", "pmid": "40885737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of 56 mother-infant dyads from the ALADDIN birth cohort"}]}, "johansson l": {"display": "Johansson L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "john da": {"display": "John DA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB82926", "pmid": "40431157", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic Supplementation Impacts Gut Microbiota Development in Infants at Risk of Atopy:…"}]}, "john-stewart g": {"display": "John-Stewart G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA635738", "pmid": "33727396", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Breast milk Microbiome/Virome of HIV+ Kenyan Women is Not Altered by Immunosuppression"}]}, "johnsen pj": {"display": "Johnsen PJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB32631", "pmid": "36456554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}]}, "johnson a": {"display": "Johnson A", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB6456", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA475246", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA486782", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA510445", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA630999", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}]}, "johnson ad": {"display": "Johnson AD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA717139", "pmid": "34154658", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitaliz…"}]}, "johnson aj": {"display": "Johnson AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA903921", "pmid": "40469735", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Mycobiome Maturation and Its Determinants during Infancy: A Comparison of Shotgun Met…"}]}, "johnson cc": {"display": "Johnson CC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB52295", "pmid": "38117587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Precocious infant gut microbiome reprograms enterocytes and promotes childhood obesity ri…"}]}, "johnson f": {"display": "Johnson F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA935534", "pmid": "37700351", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Calf microbiome features associated with susceptibility to C.parvum infection"}]}, "johnson j": {"display": "Johnson J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA899808", "pmid": "36543914", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Role of the gut microbiome in lung fibrosis"}]}, "johnson ke": {"display": "Johnson KE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1019702", "pmid": "39043677", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "39265573", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1198101", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic re-sequencing of human milk"}]}, "johnson lk": {"display": "Johnson LK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}, {"acc": "PRJEB59861", "pmid": "31678062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "johnson lm": {"display": "Johnson LM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27308", "pmid": "30974084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome metagenome analysis of stool samples from individuals with low and high saliva…"}]}, "johnson rc": {"display": "Johnson RC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445389", "pmid": "30586509", "pos": "first", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Sphingomonas koreensis Genome sequencing and assembly"}]}, "johnson s": {"display": "Johnson S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}, {"acc": "PRJNA821920", "pmid": "41782637", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mental Health Screening for Babies. What can we learn from infant and caregiver behaviors…"}]}, "johnson tj": {"display": "Johnson TJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1252780", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Effect of anitbiotic alternatives on cecal microbiome of Salmonella Heidelberg-challenged…"}, {"acc": "PRJNA605836", "pmid": "32769191", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomics of Enterobacteriaceae from wild owls"}]}, "johnson-mackinnon j": {"display": "Johnson-Mackinnon J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "johnsson a": {"display": "Johnsson Å", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "johnston c": {"display": "Johnston C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28287142", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28711653", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29281620", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29898986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "johnston sg": {"display": "Johnston SG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130617", "pmid": "41505541", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}]}, "johri v": {"display": "Johri V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "joice cordy r": {"display": "Joice Cordy R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA610982", "pmid": "33308267", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Determinants of S. aureus carriage in the developing infant nasal microbiome"}]}, "jokela r": {"display": "Jokela R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "39092808", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "jones al": {"display": "Jones AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "jones c": {"display": "Jones C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "jones cb": {"display": "Jones CB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA793907", "pmid": "35908379", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial 16S rRNA gene sequences from fecal samples of prostate cancer patients treated…"}]}, "jones dk": {"display": "Jones DK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "42311381", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "jones dl": {"display": "Jones DL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1235110", "pmid": "39798461", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome"}]}, "jones h": {"display": "Jones H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "34609275", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "jones jc": {"display": "Jones JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "jones k": {"display": "Jones K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "jones km": {"display": "Jones KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA725899", "pmid": "36747007", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of wild rodent colon, cecum and faeces"}]}, "jones l": {"display": "Jones L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1312123", "pmid": "41203618", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Development of the preterm infant gut and gastric residuals microbiome"}]}, "jones mb": {"display": "Jones MB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA383868", "pmid": "28910633", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "30482830", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}]}, "jones n": {"display": "Jones N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39143045", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}, {"acc": "PRJNA1081952", "pmid": "39367018", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "jones rb": {"display": "Jones RB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1222153", "pmid": "41547860", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Waltham Catalogue for the Canine Gut Microbiome: A complete taxonomic and functional cata…"}]}, "jones rm": {"display": "Jones RM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1071073", "pmid": "38530358", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Transgender Mouse Bone Microbiome"}]}, "jones s": {"display": "Jones S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1211045", "pmid": "40833797", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Freshwater snail faeces raw sequence reads"}]}, "jones wj": {"display": "Jones WJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA32089", "pmid": "19043404", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}]}, "jong mc": {"display": "Jong MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA750571", "pmid": "35306253", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Resistome in sewage surviellance"}]}, "jonkers dmae": {"display": "Jonkers DMAE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26795", "pmid": "30609941", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}]}, "jonscher kr": {"display": "Jonscher KR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA400115", "pmid": "35729161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}]}, "joo hs": {"display": "Joo HS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA483343", "pmid": "30305736", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "joon a": {"display": "Joon A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA734860", "pmid": "34633706", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA734860", "pmid": "35477306", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}]}, "joos r": {"display": "Joos R", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "joossens m": {"display": "Joossens M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177813", "pmid": "39796584", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "2FL age specific bifidobacterium effect"}]}, "jordaan k": {"display": "Jordaan K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA630822", "pmid": "34732568", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA630822", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}]}, "jordan f": {"display": "Jordan F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB2778", "pmid": "26399409", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}]}, "jordan s": {"display": "Jordan S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB82926", "pmid": "40431157", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic Supplementation Impacts Gut Microbiota Development in Infants at Risk of Atopy:…"}]}, "jordao s": {"display": "Jordão S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "jorgensen e": {"display": "Jorgensen E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "jorgensen t": {"display": "Jørgensen T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}]}, "jorgensen vr": {"display": "Jørgensen VR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58634", "pmid": "40707831", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencin…"}]}, "jornayvaz fr": {"display": "Jornayvaz FR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36797", "pmid": "32711187", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The GLP-1R agonist liraglutide limits hepatic lipotoxicity and inflammatory response in m…"}]}, "joshi cg": {"display": "Joshi CG", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB26614", "pmid": "31754151", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Khambhat"}, {"acc": "PRJEB26615", "pmid": "31754151", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Kutch"}]}, "joshi lr": {"display": "Joshi LR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA613851", "pmid": "38091183", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "INVESTIGATION OF THE BACTERIAL AND VIRAL DIVERSITY OF DIDELPHID OPOSSUMS FROM BRAZILIAN F…"}]}, "joshi pr": {"display": "Joshi PR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29668933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "joshi s": {"display": "Joshi S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA860728", "pmid": "36121157", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "GenCap-Seq Selectively Enriches Bacterial DNA and Enables Genome-wide Measurement of Intr…"}]}, "jovel j": {"display": "Jovel J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "joyner m": {"display": "Joyner M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "ju h": {"display": "Ju H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA869587", "pmid": "36973710", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human viral metagenome Metagenome"}, {"acc": "PRJNA871195", "pmid": "36973710", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Intestinal phage analysis of neonates and children under 5 years old"}]}, "juanola a": {"display": "Juanola A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}]}, "judge mf": {"display": "Judge MF", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA644779", "pmid": "33384459", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "yogurt and kefir seed culture sequencing"}, {"acc": "PRJNA685398", "pmid": "36083885", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Honey bee gut microbiome"}]}, "juhasz a": {"display": "Juhász A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1211045", "pmid": "40833797", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Freshwater snail faeces raw sequence reads"}]}, "julian tr": {"display": "Julian TR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA706606", "pmid": "36416733", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of Water Chlorination of Children's Gut Microbiomes in Bangladesh"}, {"acc": "PRJNA726052", "pmid": "35422497", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effects of drinking water chlorination on childrens intestinal flora and resistomes in Dh…"}]}, "juliana g": {"display": "Juliana G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019500", "pmid": "39054413", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}]}, "juliano jj": {"display": "Juliano JJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB10057", "pmid": "26180832", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Variation in the Microbiota of Ixodes ticks with geography, species and sex"}, {"acc": "PRJEB10073", "pmid": "26180832", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Variation in the Microbiota of Ixodes ticks with geography, species and sex illumina"}]}, "julienne h": {"display": "Julienne H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "julius study group": {"display": "JULIUS Study Group", "group": true, "n_studies": 1, "studies": [{"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "jun as": {"display": "Jun AS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA745199", "pmid": "29340642", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics sequencing of infectious microbes from ocular sarcoidosis tissue specimens"}]}, "juncker as": {"display": "Juncker AS", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}]}, "jung hj": {"display": "Jung HJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}]}, "jung j": {"display": "Jung J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "jung jy": {"display": "Jung JY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "34666677", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "jung m": {"display": "Jung M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "jung s": {"display": "Jung S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1458854", "pmid": "42370707", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Validation of an Integrated Metagenomic Pipeline Combining Optimized Wet Lab Processing a…"}]}, "junges r": {"display": "Junges R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA876384", "pmid": "36620054", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Microbial DNA extraction of high-host content and low biomass samples: optimized protocol…"}]}, "junker j": {"display": "Junker J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675607", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Biogeochemistry study on Lake Tanganyika in Tanzania"}]}, "juntas-morales r": {"display": "Juntas-Morales R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "juottonen h": {"display": "Juottonen H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "jurado-santacruz f": {"display": "Jurado-Santacruz F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "jurkevitch e": {"display": "Jurkevitch E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA661164", "pmid": "33904706", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Treated Wastewater and Soil Meta-genomic Samples"}]}, "juste c": {"display": "Juste C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB7925", "pmid": "25887914", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Quality control of microbiota metagenomics by k-mer analysis with SOLiD sequencing techno…"}]}, "juste maj": {"display": "Juste MAJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445968", "pmid": "28883399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA445968", "pmid": "30282828", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}]}, "justine m": {"display": "Justine M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1305341", "pmid": "42013844", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "ProRIDE Deep Seq Metagenomics Raw sequence reads"}]}, "kaan am": {"display": "Kaan AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB88622", "pmid": "41785249", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Functional adaptations and metabolic interactions of undescribed Streptococcus and Rothia…"}]}, "kaas rs": {"display": "Kaas RS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}]}, "kabeerdoss j": {"display": "Kabeerdoss J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1304237", "pmid": "41017911", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota Signatures in Indian Preterm Infants with Necrotizing Enterocolitis"}]}, "kabila dw": {"display": "Kabila DW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273078", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Noma oral microbiome raw sequence reads"}]}, "kabilov mr": {"display": "Kabilov MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA547700", "pmid": "31671744", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lake Baikal Viromes Raw sequence reads"}]}, "kabir m": {"display": "Kabir M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "kaczmarczyk m": {"display": "Kaczmarczyk M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "kaczorowska j": {"display": "Kaczorowska J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA422569", "pmid": "30126456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}]}, "kadaj-lipka r": {"display": "Kadaj-Lipka R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "kaderbhai c": {"display": "Kaderbhai C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "kadowaki t": {"display": "Kadowaki T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "kahn lm": {"display": "Kahn LM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "kahvejian a": {"display": "Kahvejian A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA679286", "pmid": "34320399", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Global genome analyses reveal a vast and dynamic anellovirus landscape within the human v…"}]}, "kaiser l": {"display": "Kaiser L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40995", "pmid": "34492446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of antibiotic duration on the intestinal microbiota and resistome"}]}, "kalan lr": {"display": "Kalan LR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078287", "pmid": "39425237", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Infant Upper Respiratory Microbiome"}]}, "kalantar k": {"display": "Kalantar K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "32351922", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "kalantar kl": {"display": "Kalantar KL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "kalb b": {"display": "Kalb B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "kalbfleisch k": {"display": "Kalbfleisch K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1055141", "pmid": "42336834", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool shallow shotgun sequencing (ANTIBIO)"}]}, "kaldhusdal v": {"display": "Kaldhusdal V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37731", "pmid": "33208514", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "39160615", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}]}, "kaleebu p": {"display": "Kaleebu P", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}, {"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "kaljonen a": {"display": "Kaljonen A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "kallmeyer j": {"display": "Kallmeyer J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB66721", "pmid": "39384533", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metabolic features explaining the prevalence Bathyarchaeia among microbial communities in…"}, {"acc": "PRJEB98232", "pmid": "41459228", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Cryptic sulfur cycling sustains lithotrophy in the deep biosphere of ferruginous Lake Tow…"}]}, "kalman c": {"display": "Kalman C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "kalnins m": {"display": "Kalniņš M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42185", "pmid": "34192537", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}]}, "kalua k": {"display": "Kalua K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "kamada n": {"display": "Kamada N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1148165", "pmid": "39947133", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut metagenomic samples of IBD patients"}]}, "kamano fm": {"display": "Kamano FM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "kambal a": {"display": "Kambal A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB7772", "pmid": "25619688", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}]}, "kamboj s": {"display": "Kamboj S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}]}, "kamili s": {"display": "Kamili S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}]}, "kamm ma": {"display": "Kamm MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA715634", "pmid": "34035441", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Novel Strain Level Resolution of Crohns Disease Mucosa-Associated Microbiota via an ex vi…"}]}, "kampouris id": {"display": "Kampouris ID", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1262354", "pmid": "41603547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMBARK - Establishing a Monitoring Baseline for Antimicrobial Resistance in Key environme…"}]}, "kamulali tm": {"display": "Kamulali TM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675607", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Biogeochemistry study on Lake Tanganyika in Tanzania"}]}, "kanaan g": {"display": "Kanaan G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1227241", "pmid": "40883892", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Investigating DNA methylation in sea-ice Bacteria"}]}, "kanakry cg": {"display": "Kanakry CG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156457", "pmid": "39731681", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acanthamoeba sequencing"}]}, "kanakry ja": {"display": "Kanakry JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}]}, "kanani p": {"display": "Kanani P", "group": false, "n_studies": 10, "studies": [{"acc": "PRJEB14964", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Maternal Secretor Status and Microbiota Composition"}, {"acc": "PRJEB27914", "pmid": "41751912", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Six-week endurance exercise alters gut metagenome that is not reflected in systemic metab…"}, {"acc": "PRJEB29078", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA307231", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA32089", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}, {"acc": "PRJNA322188", "pmid": "41751912", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA445932", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA541981", "pmid": "41751912", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome in melanoma patients"}, {"acc": "PRJNA565546", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "fecal sample Raw sequence reads"}, {"acc": "PRJNA763023", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Dysbiosis of human gut microbiome in young-onset colorectal cancer"}]}, "kandasamy y": {"display": "Kandasamy Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA751712", "pmid": "35345612", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "To Probiotic or not to probiotic: using metagenomics to compare the gut microbiome of inf…"}, {"acc": "PRJNA751712", "pmid": "35796792", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "To Probiotic or not to probiotic: using metagenomics to compare the gut microbiome of inf…"}]}, "kandels-lewis s": {"display": "Kandels-Lewis S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24041", "pmid": "29496731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Selective maternal seeding and environment shape the human gut microbiome"}]}, "kanduth c": {"display": "Kanduth C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": "29152325", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": "32354144", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "kang d": {"display": "Kang D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "kang dy": {"display": "Kang DY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB17097", "pmid": "40226095", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "St Johns Island Resistome project"}]}, "kang g": {"display": "Kang G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62041", "pmid": "37980461", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rotavirus Vaccine Immunogenicity (RoVI) shotgun metagenomics"}]}, "kang j": {"display": "Kang J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961698", "pmid": "37610205", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Very Early Life Microbiome and Metabolome Correlates with Primary Vaccination Variability…"}]}, "kang k": {"display": "Kang K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573821", "pmid": "32919472", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Whole Meta-genome shotgun sequencing of stool samples from human treated with antibiotics"}]}, "kang nj": {"display": "Kang NJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45443", "pmid": "35485368", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}]}, "kang s": {"display": "Kang S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA715634", "pmid": "34035441", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Novel Strain Level Resolution of Crohns Disease Mucosa-Associated Microbiota via an ex vi…"}]}, "kang z": {"display": "Kang Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA806510", "pmid": "40487637", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of Gut Microbiota Mediated Metformin Monotherapy Failure in Type 2 Diabetes Mellitus"}]}, "kangelaris kn": {"display": "Kangelaris KN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "kannan p": {"display": "Kannan P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA941822", "pmid": "37006617", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Mining nitrile hydrolysing enzymes from coal metagenome"}, {"acc": "PRJNA941822", "pmid": "37043060", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Mining nitrile hydrolysing enzymes from coal metagenome"}]}, "kanno t": {"display": "Kanno T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1463324", "pmid": "41342324", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "VE202 phase 1 stool metagenomes"}]}, "kantele a": {"display": "Kantele A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21259", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}]}, "kanzawa-kiriyama h": {"display": "Kanzawa-Kiriyama H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15334", "pmid": "32994538", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Radcliffe dental calculus"}]}, "kao c": {"display": "Kao C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}]}, "kao d": {"display": "Kao D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701961", "pmid": "37069665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA701961", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "kapley a": {"display": "Kapley A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "kappel ss": {"display": "Kappel SS", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB6456", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB97976", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome maturation during weaning"}, {"acc": "PRJEB97980", "pmid": "42203770", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential impact of doxycycline treatment on antimicrobial resistance genes in the enteri…"}, {"acc": "PRJEB98012", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Creeping Fat"}, {"acc": "PRJEB98069", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Distinct Microbial and Resistome Signatures Differentiate Healthy and Inflamed Ileal Pouc…"}]}, "kappler c": {"display": "Kappler C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1297429", "pmid": "40946313", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "16S and RNA sequencing Anopheles gambiae"}]}, "kapusinszky b": {"display": "Kapusinszky B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA255683", "pmid": "25078300", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "CAT fecal Metagenome"}]}, "karagas mr": {"display": "Karagas MR", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB29078", "pmid": "37874156", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA1139690", "pmid": "40340756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "HOME Study fecal samples"}, {"acc": "PRJNA296814", "pmid": "29973274", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "30135504", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "32968156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "34215179", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "34454437", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35568730", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35847562", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35906254", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "36632065", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "36777525", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "37138613", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA322188", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA695570", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "karaglani e": {"display": "Karaglani E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA798191", "pmid": "36038938", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bamboo microbiota study in infants"}]}, "karakoc-aydiner e": {"display": "Karakoc-Aydiner E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "karamba am": {"display": "Karamba AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "karanja s": {"display": "Karanja S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52748", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome function and composition in infants from rural Kenya and association with…"}, {"acc": "PRJEB6456", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "karathia h": {"display": "Karathia H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "karav s": {"display": "Karav S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA390646", "pmid": "30338216", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}]}, "karcher n": {"display": "Karcher N", "group": false, "n_studies": 16, "studies": [{"acc": "PRJDB4176", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB15371", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB1690", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB21528", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB22893", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome impacts response to PD-1 immunotherapy in melanoma patients"}, {"acc": "PRJEB27005", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB39223", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB44737", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJNA231909", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA231909", "pmid": "39885121", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "30661755", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA328899", "pmid": "39885121", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA356102", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}, {"acc": "PRJNA48479", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA48479", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA504891", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "karel d": {"display": "Karel D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87602", "pmid": "37243505", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteria in colitis associated cancer development"}]}, "karkman a": {"display": "Karkman A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA384716", "pmid": "30250208", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}]}, "karlsen ti": {"display": "Karlsen TI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "karmacharya p": {"display": "Karmacharya P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "karmouch jl": {"display": "Karmouch JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "karnani n": {"display": "Karnani N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "karpen sj": {"display": "Karpen SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078280", "pmid": "38405928", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Quantifying forms and functions of intestinal bile acid pools in mice"}]}, "karpinets t": {"display": "Karpinets T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "karst sm": {"display": "Karst SM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB48021", "pmid": "35789207", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of anaerobic digester at Fredericia WWTP with short and long read s…"}, {"acc": "PRJEB48692", "pmid": "35789207", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Sequenced reads for ZymoBIOMICS HMW DNA Standard, including reads from Illumina, Nanopore…"}]}, "kartal e": {"display": "Kartal E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "kasap n": {"display": "Kasap N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "kashaf ss": {"display": "Kashaf SS", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "kashani a": {"display": "Kashani A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}]}, "kassam z": {"display": "Kassam Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": "35365713", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}, {"acc": "PRJNA737472", "pmid": null, "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "kassambara h": {"display": "Kassambara H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "katama en": {"display": "Katama EN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156362", "pmid": "39319086", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Genomic epidemiology of human adenoviruses"}]}, "kataoka c": {"display": "Kataoka C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA30563", "pmid": "18976571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High throughput sequence to detect the presence of a pathogenic microbe in a clinical hum…"}]}, "katawera v": {"display": "Katawera V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "katayama t": {"display": "Katayama T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6456", "pmid": "35768643", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "katayama y": {"display": "Katayama Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB5383", "pmid": "28095784", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of a novel bovine enterovirus possessing highly divergent amino acid seque…"}]}, "kato k": {"display": "Kato K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352376", "pmid": "28072390", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}]}, "katoh t": {"display": "Katoh T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6456", "pmid": "35768643", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "katsikis pd": {"display": "Katsikis PD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "katsumura t": {"display": "Katsumura T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB15258", "pmid": "38265980", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of 7,000 to 5,500 years old coprolites excavated from the Torihama s…"}]}, "kattelus r": {"display": "Kattelus R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "kattusamy k": {"display": "Kattusamy K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA598014", "pmid": "34454634", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Broiler Chicken Cloacal and Litter Meta-genomic Samples"}]}, "katuwal n": {"display": "Katuwal N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019500", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}]}, "katyukhina a": {"display": "Katyukhina A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA980291", "pmid": "38298144", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Targeted Capture of AMR in children in Botswana"}]}, "katzowitsch e": {"display": "Katzowitsch E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40662", "pmid": "34675897", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Deep (Meta)genomics and (Meta)transcriptome Analyses of Fungal and Bacteria Consortia Fro…"}]}, "kau al": {"display": "Kau AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59709", "pmid": "38560624", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut metagenome harbors metabolic and antibiotic resistance signatures of established…"}]}, "kauffman m": {"display": "Kauffman M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA484151", "pmid": "31379808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural and Urban infant''s fecal microbiota study"}]}, "kaufhold g": {"display": "Kaufhold G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}]}, "kaufhold rm": {"display": "Kaufhold RM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961698", "pmid": "37610205", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Very Early Life Microbiome and Metabolome Correlates with Primary Vaccination Variability…"}]}, "kaul d": {"display": "Kaul D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA475137", "pmid": "33245689", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhizopus oryzae Genome sequencing and assembly"}, {"acc": "PRJNA551026", "pmid": "32130897", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Monogenic skin disease driven by staphylococcal dysbiosis"}]}, "kaul r": {"display": "Kaul R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA208535", "pmid": "40607829", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The daily dynamics of the vaginal microbiota before and after bacterial vaginosis"}]}, "kaur h": {"display": "Kaur H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA986525", "pmid": "38441000", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "2'-fucoysllactose treatment of C57BL/6 adult mice fecal metagenomics"}]}, "kaur j": {"display": "Kaur J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA376580", "pmid": "28232747", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hospital (NICU) surfaces and sinks"}]}, "kavanova k": {"display": "Kavanova K", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB12124", "pmid": "38652229", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-dependent stratification of patients for anti-diabetic treatment"}, {"acc": "PRJNA563062", "pmid": "38652229", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Capybara (Hydrochoerus hydrochaeris) Metagenome"}, {"acc": "PRJNA684904", "pmid": "38652229", "pos": "first", "reason_code": null, "src": "L", "status": "human_review", "title_short": "human gut metagenome Genome sequencing and assembly"}, {"acc": "PRJNA747761", "pmid": "38652229", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Atlanta, USA and Maputo, Mozambique Children gut microbiome Metagenome"}]}, "kawabata s": {"display": "Kawabata S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJDB16375", "pmid": "38708423", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Hybrid sequence-based analysis reveals the distribution of bacterial species and genes in…"}, {"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "kawada ji": {"display": "Kawada JI", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB10705", "pmid": "34859110", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Blood microbiome in febrile patients"}, {"acc": "PRJDB10711", "pmid": "34090359", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics for pathogens detection from patients with fever of unknown origin"}]}, "kawai j": {"display": "Kawai J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA30563", "pmid": "18976571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High throughput sequence to detect the presence of a pathogenic microbe in a clinical hum…"}]}, "kawai t": {"display": "Kawai T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "kawanami t": {"display": "Kawanami T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB7462", "pmid": "25080337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The genomic analysis of an unclutured bacterium IOLA detected from a patient with chronic…"}]}, "kawano y": {"display": "Kawano Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10711", "pmid": "34090359", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics for pathogens detection from patients with fever of unknown origin"}]}, "kawaoka y": {"display": "Kawaoka Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB8125", "pmid": "31549291", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metaviromic analyses on crane fecal samples"}]}, "kawas b": {"display": "Kawas B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA667736", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Milk Metagenome Anomaly Detection Project"}]}, "kawashima h": {"display": "Kawashima H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB14457", "pmid": "36363762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of healthy Japanese adult"}]}, "kawashima y": {"display": "Kawashima Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "kawaza k": {"display": "Kawaza K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63570", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Klebsiella_transmission_and_immunity_on_Chatinkha_nursery__Neo_TRACK_"}]}, "kawazoe a": {"display": "Kawazoe A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "kawli t": {"display": "Kawli T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "kay gl": {"display": "Kay GL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA722408", "pmid": "36076058", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}, {"acc": "PRJNA722408", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}]}, "kayal a": {"display": "Kayal A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA997754", "pmid": "38231265", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Pioneering gut health improvements in piglets with phytogenic feed additives"}]}, "kayali o": {"display": "Kayali O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA747761", "pmid": "37938667", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Atlanta, USA and Maputo, Mozambique Children gut microbiome Metagenome"}]}, "kayiwa j": {"display": "Kayiwa J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}]}, "kayode t": {"display": "Kayode T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "kaysen a": {"display": "Kaysen A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA379120", "pmid": "30504906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}]}, "kayser bd": {"display": "Kayser BD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB23292", "pmid": "29899081", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysbiosis, including decreased gut microbial richness (MGR) and composition modifications…"}]}, "kayuni sa": {"display": "Kayuni SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1211045", "pmid": "40833797", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Freshwater snail faeces raw sequence reads"}]}, "kazakova p": {"display": "Kazakova P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA949443", "pmid": "37175775", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Targeted Locus (Loci)"}]}, "kazanov md": {"display": "Kazanov MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}]}, "kazi s": {"display": "Kazi S", "group": false, "n_studies": 9, "studies": [{"acc": "PRJNA273761", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA327106", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA396794", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA630999", "pmid": "33665175", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA633576", "pmid": "33479326", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA63661", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "kazi z": {"display": "Kazi Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "kazlauskas d": {"display": "Kazlauskas D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA605028", "pmid": "32690954", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Genome sequencing and assembly"}]}, "kazy sk": {"display": "Kazy SK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1279970", "pmid": "42108276", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Carbon dioxide utilizing microaerophilic and anaerobic chemolithoautotrophic enrichments…"}]}, "ke x": {"display": "Ke X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "keane j": {"display": "Keane J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA977671", "pmid": "38320392", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Microbiome analysis of cold related stress in poultry"}]}, "keane jm": {"display": "Keane JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352475", "pmid": "36420990", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "kearney sm": {"display": "Kearney SM", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA398089", "pmid": "35614211", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}, {"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "keawsompong s": {"display": "Keawsompong S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA637175", "pmid": "33668840", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}]}, "keenan k": {"display": "Keenan K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895372", "pmid": "38303501", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiome function and neurodevelopment in Black infants: Vitamin B12 biosynthesis emerg…"}]}, "keenan o": {"display": "Keenan O", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "keeney g": {"display": "Keeney G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "keenum im": {"display": "Keenum IM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA506850", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "USDA Developing Computational Tools To Identify Critical Control Points For Mitigating Th…"}]}, "kehe j": {"display": "Kehe J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA623215", "pmid": "32349121", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing to evaluate massively multiplexed detection with Cas13"}]}, "kehr j": {"display": "Kehr J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15376", "pmid": "29067007", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome, metatranscriptome and exo-proteome analyses identify molecular keys and main…"}]}, "kehrmann j": {"display": "Kehrmann J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA947377", "pmid": "38366600", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Establishment of a non-Westernized gut microbiota in men who have sex with men is associa…"}]}, "keim p": {"display": "Keim P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "29075368", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "keim ps": {"display": "Keim PS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "28721231", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "keita mb": {"display": "Keita MB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "keizer d": {"display": "Keizer D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA524170", "pmid": "31605691", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistant microbiome underlies antibiotic therapy in pouchitis"}]}, "kekkonen ra": {"display": "Kekkonen RA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11685", "pmid": "26811868", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children"}]}, "kelkar t": {"display": "Kelkar T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA549787", "pmid": "31832638", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}]}, "kelleher sl": {"display": "Kelleher SL", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA301903", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA396794", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA532310", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut metagenome"}]}, "keller a": {"display": "Keller A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "keller bc": {"display": "Keller BC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB7772", "pmid": "25619688", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}]}, "keller jj": {"display": "Keller JJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB44737", "pmid": "34126062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJNA1071720", "pmid": "38572716", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FECBUD Study Fecal Metagenomes"}]}, "keller p": {"display": "Keller P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB25228", "pmid": "31616669", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Cardiobacterium hominis"}]}, "keller pm": {"display": "Keller PM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24753", "pmid": "31448292", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Neisseria meningitidis"}]}, "kelley s": {"display": "Kelley S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA289925", "pmid": "26701081", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candidatus [Bacteroides] periocalifornicus isolate:12B Genome sequencing and assembly"}]}, "kelley st": {"display": "Kelley ST", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB57859", "pmid": "36612923", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Analysis of Microbial Contamination in the U.S. Portion of the Tijuana River…"}]}, "kelly a": {"display": "Kelly A", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1177516", "pmid": "40483244", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Changes in Fecal Microbiota in Adults with Cystic Fibrosis with 6 Months of CFTR Modulato…"}, {"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "kelly bj": {"display": "Kelly BJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "kelly cp": {"display": "Kelly CP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "kelly kr": {"display": "Kelly KR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "21779173", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "kelly lw": {"display": "Kelly LW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819194", "pmid": "35606844", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "KRuMBS: Kyphosid Ruminant Microbial Biodigestor of Seaweeds"}]}, "kelly ms": {"display": "Kelly MS", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}, {"acc": "PRJNA947616", "pmid": "37974294", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome and bloodstream infections among premature infants in Singapore"}]}, "kelly wj": {"display": "Kelly WJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "kelsi penewit": {"display": "Kelsi Penewit", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177516", "pmid": "40483244", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Changes in Fecal Microbiota in Adults with Cystic Fibrosis with 6 Months of CFTR Modulato…"}]}, "kemthong t": {"display": "Kemthong T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA548968", "pmid": "31652508", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Fecal virome of wild and captive Cynomolgus macaques (Macaca fascicularis) in Thailand."}]}, "kennedy k": {"display": "Kennedy K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "kennedy p": {"display": "Kennedy P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA903921", "pmid": "40469735", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Mycobiome Maturation and Its Determinants during Infancy: A Comparison of Shotgun Met…"}]}, "kennedy s": {"display": "Kennedy S", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB6314", "pmid": "25496341", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Construction of a dairy microbial genome catalog opens new perspectives for the metagenom…"}, {"acc": "PRJEB7925", "pmid": "25887914", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Quality control of microbiota metagenomics by k-mer analysis with SOLiD sequencing techno…"}]}, "kennedy sp": {"display": "Kennedy SP", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}, {"acc": "PRJEB4413", "pmid": "23985875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary intervention impact on gut microbial gene richness based on SOLiD next generation…"}, {"acc": "PRJEB77434", "pmid": "37271782", "pos": "last", "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Vaginal Microbiota Dynamics in Pregnancy"}]}, "kennerson m": {"display": "Kennerson M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "kenny d": {"display": "Kenny D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8939", "pmid": "28085156", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of Rumen microbiomes reveals the functional isoforms driving microbi…"}]}, "kenny dj": {"display": "Kenny DJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA559861", "pmid": "32544460", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cholesterol Metabolism by Uncultured Human Gut Bacteria Influences Host Cholesterol Level."}]}, "kenyon v": {"display": "Kenyon V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "kern c": {"display": "Kern C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80549", "pmid": "41196055", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterisation of the forehead and armpit skin microbiome of healthy individuals using…"}]}, "kerou m": {"display": "Kerou M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1108908", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1108960", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1109334", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}]}, "kerper r": {"display": "Kerper R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA797011", "pmid": "35707545", "pos": null, "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "T cell receptor repertoire in premature infants"}]}, "kersting s": {"display": "Kersting S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "kertesz m": {"display": "Kertesz M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "kervella ae": {"display": "Kervella AE", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "keshavarzian a": {"display": "Keshavarzian A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB17694", "pmid": "27912057", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Di…"}, {"acc": "PRJEB7772", "pmid": "25619688", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}]}, "kesseru p": {"display": "Kesserű P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA885840", "pmid": "38151716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Superfoods Raw data"}]}, "kessler lr": {"display": "Kessler LR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA451186", "pmid": "30376898", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Placenta Microbiome"}]}, "ketema m": {"display": "Ketema M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "33553097", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "33829128", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "ketskemety j": {"display": "Ketskemety J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14935", "pmid": "29096601", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Term and preterm shotgun samples"}]}, "key fm": {"display": "Key FM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}]}, "khadka s": {"display": "Khadka S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1233203", "pmid": null, "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Microbiome of recirculating aquaculture systems under different particle loads (MikroRAS)"}]}, "khafizov k": {"display": "Khafizov K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA755866", "pmid": "34696436", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viruses in Bats"}, {"acc": "PRJNA755887", "pmid": "34696436", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Viruses in Bats"}]}, "khalid d": {"display": "Khalid D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "khalife w": {"display": "Khalife W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA660443", "pmid": "34785751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the human gut during enteric infection"}]}, "khalil s": {"display": "Khalil S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA551026", "pmid": "32130897", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Monogenic skin disease driven by staphylococcal dysbiosis"}]}, "khalili h": {"display": "Khalili H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685168", "pmid": "34297922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics suggest diverse mechanisms for response to biologic therapies in IBD"}]}, "khan as": {"display": "Khan AS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1011899", "pmid": "40155393", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Collaborative spiking study 2B for high throughput sequencing for virus detection"}]}, "khan maw": {"display": "Khan MAW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "khan na": {"display": "Khan NA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "khan zm": {"display": "Khan ZM", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "khanna s": {"display": "Khanna S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1067813", "pmid": "39731916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C. difficile-associated mouse and human fecal metagenomes"}, {"acc": "PRJNA1121316", "pmid": "37060545", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}]}, "khartanovich v": {"display": "Khartanovich V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "khasanova k": {"display": "Khasanova K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1366497", "pmid": "42553090", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Bifidobacterium- and Escherichia-dominated gut microbiome metabolic shifts in tuberculosi…"}]}, "khassenbekova d": {"display": "Khassenbekova D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA949528", "pmid": "40399402", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}, {"acc": "PRJNA973824", "pmid": "40399402", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Immunoregulatory role of gut microbiome and mycobiome in aging"}]}, "khemapech n": {"display": "Khemapech N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "khetrapal v": {"display": "Khetrapal V", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA390646", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA633576", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}]}, "khodamoradi y": {"display": "Khodamoradi Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "khokhlov a": {"display": "Khokhlov A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "khokhlova ev": {"display": "Khokhlova EV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA678472", "pmid": "34407825", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Long-term persistence of crAss-like phage crAss001 in Bacteroides intestinalis cultures i…"}]}, "khongthong s": {"display": "Khongthong S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA483343", "pmid": "30305736", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "khoruts a": {"display": "Khoruts A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468588", "pmid": "42490468", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome dynamics in a primary sclerosing cholangitis patient treated with vancomyc…"}]}, "khula south africa data collection team": {"display": "Khula South Africa Data Collection Team", "group": true, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "42311381", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "khula south african data collection team": {"display": "Khula South African Data Collection Team", "group": true, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "kidwai s": {"display": "Kidwai S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542703", "pmid": "42131447", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}]}, "kiely me": {"display": "Kiely ME", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "kienesberger s": {"display": "Kienesberger S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA63661", "pmid": "41250602", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "kiesewetter h": {"display": "Kiesewetter H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352376", "pmid": "28072390", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}]}, "kiguchi y": {"display": "Kiguchi Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB8956", "pmid": "34586399", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An efficient and accurate reconstruction of the full-length phage genomes by chimera-free…"}]}, "kiiza r": {"display": "Kiiza R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}]}, "kiljunen s": {"display": "Kiljunen S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB89462", "pmid": "41873970", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of phage enrichment on the observed infant gut phageome"}]}, "kille p": {"display": "Kille P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1235110", "pmid": "39798461", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome"}]}, "killeen sl": {"display": "Killeen SL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "37230981", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJEB48251", "pmid": "39365058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "kim b": {"display": "Kim B", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB33013", "pmid": "36504822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB45443", "pmid": "35485368", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJEB55713", "pmid": "36504822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Child gut microbiome"}]}, "kim bs": {"display": "Kim BS", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45443", "pmid": "35485368", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJEB45443", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJNA979436", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}]}, "kim cs": {"display": "Kim CS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1369410", "pmid": "42242497", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics sequencing from patients with CD4 lymphopenia"}]}, "kim cy": {"display": "Kim CY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA798244", "pmid": "36289209", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "HiFi Metagenomic Sequencing Enables Assembly of Accurate Circularized Genomes of Long and…"}]}, "kim d": {"display": "Kim D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "kim e": {"display": "Kim E", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB33013", "pmid": "36504822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB55713", "pmid": "36504822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Child gut microbiome"}, {"acc": "PRJNA171119", "pmid": "20976137", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "kim h": {"display": "Kim H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "kim hc": {"display": "Kim HC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA602729", "pmid": "34079079", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}]}, "kim he": {"display": "Kim HE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA930375", "pmid": "37264481", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Addition of cariogenic pathogens to complex oral microbiota drives significant changes in…"}]}, "kim j": {"display": "Kim J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB33013", "pmid": "36504822", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB55713", "pmid": "36504822", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Child gut microbiome"}, {"acc": "PRJNA311208", "pmid": "27406942", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Severe gut microbiota dysbiosis is associated with poor growth in patients with short bow…"}]}, "kim jg": {"display": "Kim JG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA938144", "pmid": "37754563", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HOLA gut microbiome"}]}, "kim jh": {"display": "Kim JH", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45443", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJNA979436", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}]}, "kim ji": {"display": "Kim JI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}]}, "kim m": {"display": "Kim M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA311208", "pmid": "27406942", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Severe gut microbiota dysbiosis is associated with poor growth in patients with short bow…"}, {"acc": "PRJNA747761", "pmid": "37938667", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Atlanta, USA and Maputo, Mozambique Children gut microbiome Metagenome"}, {"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "kim ms": {"display": "Kim MS", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB87348", "pmid": "40210629", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "VLP metagenome of Korean gut"}, {"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "kim ne": {"display": "Kim NE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45443", "pmid": "35485368", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}]}, "kim ry": {"display": "Kim RY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA562766", "pmid": "33208745", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}]}, "kim s": {"display": "Kim S", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}, {"acc": "PRJEB6456", "pmid": "33411719", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA48479", "pmid": "33411719", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA787952", "pmid": "35239511", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}]}, "kim sg": {"display": "Kim SG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}]}, "kim t": {"display": "Kim T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45443", "pmid": "35485368", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJEB45443", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJNA979436", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}]}, "kim y": {"display": "Kim Y", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}, {"acc": "PRJEB32631", "pmid": "40328944", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA1148165", "pmid": "39947133", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut metagenomic samples of IBD patients"}, {"acc": "PRJNA400628", "pmid": "40328944", "pos": "first", "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "Escherichia coli Genome sequencing and assembly"}]}, "kim yb": {"display": "Kim YB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA894691", "pmid": "37082122", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Maternal exposure to air pollution changes gut microbiota in mice"}]}, "kim yg": {"display": "Kim YG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "kim ys": {"display": "Kim YS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "kimirei ia": {"display": "Kimirei IA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675607", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Biogeochemistry study on Lake Tanganyika in Tanzania"}]}, "kimmelman ac": {"display": "Kimmelman AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "kimura m": {"display": "Kimura M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "kinabo g": {"display": "Kinabo G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73590", "pmid": "37111504", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}, {"acc": "PRJEB73590", "pmid": "38235427", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}]}, "kinfu bm": {"display": "Kinfu BM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA240141", "pmid": "36284144", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "king am": {"display": "King AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352376", "pmid": "28072390", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}]}, "king og": {"display": "King OG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60914", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Roles of gut microbiota-mediated nutrient competition and metabolite inhibition in the in…"}]}, "king p": {"display": "King P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA255985", "pmid": "25279840", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human saliva, creek water, and synthetic metagenomic samples used in selective DNA isolat…"}]}, "king s": {"display": "King S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1355224", "pmid": "42037384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human metagenomic samples Metagenome"}]}, "king t": {"display": "King T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629517", "pmid": "34145447", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "DFO - beads in situ microcosms Raw sequence reads"}]}, "kinnebrew m": {"display": "Kinnebrew M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA259179", "pmid": "25337874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Studies of intestinal microbiome and infection resistance"}]}, "kinoshita m": {"display": "Kinoshita M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "kinsela as": {"display": "Kinsela AS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14718", "pmid": "28667104", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Study of the changes in the metagenome of the groundwater community at Little Forest Lega…"}, {"acc": "PRJEB14718", "pmid": "34737728", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Study of the changes in the metagenome of the groundwater community at Little Forest Lega…"}, {"acc": "PRJEB14718", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Study of the changes in the metagenome of the groundwater community at Little Forest Lega…"}]}, "kinuthia j": {"display": "Kinuthia J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1045584", "pmid": "39185682", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of SARS-CoV-2 in stool sample from women living with HIV and HIV-negative women an…"}]}, "kioh dyq": {"display": "Kioh DYQ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "kipke md": {"display": "Kipke MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA836336", "pmid": "36179550", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenome of MSM prior to and following HIV seroconversion"}]}, "kiran s": {"display": "Kiran S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "kiratisin p": {"display": "Kiratisin P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA483343", "pmid": "30305736", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "kirchberger n": {"display": "Kirchberger N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "kircher b": {"display": "Kircher B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51501", "pmid": "36416760", "pos": "first", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Predicting butyrate- and propionate-forming bacteria of gut microbiota from sequencing da…"}, {"acc": "PRJEB51501", "pmid": null, "pos": "first", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Predicting butyrate- and propionate-forming bacteria of gut microbiota from sequencing da…"}]}, "kirjavainen pv": {"display": "Kirjavainen PV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15633", "pmid": "35406036", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}]}, "kirkegaard r": {"display": "Kirkegaard R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1112760", "pmid": "39679616", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic signatures of early life brain damage"}]}, "kirkegaard rh": {"display": "Kirkegaard RH", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB48021", "pmid": "35789207", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of anaerobic digester at Fredericia WWTP with short and long read s…"}, {"acc": "PRJEB48692", "pmid": "35789207", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Sequenced reads for ZymoBIOMICS HMW DNA Standard, including reads from Illumina, Nanopore…"}, {"acc": "PRJNA1033532", "pmid": "38014294", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Evaluating the impact of pharmaceuticals on the human gut microbiome Raw sequence reads"}]}, "kirkland me": {"display": "Kirkland ME", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA899808", "pmid": "36543914", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Role of the gut microbiome in lung fibrosis"}]}, "kirkpatrick cl": {"display": "Kirkpatrick CL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "kirleis w": {"display": "Kirleis W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49648", "pmid": "39155318", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Neolithic Yersinia pestis infections in humans and a dog"}]}, "kirn tj": {"display": "Kirn TJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}]}, "kirsche l": {"display": "Kirsche L", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1275869", "pmid": "41620544", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Sequencing of stool samples from Ethiopian children from Adama (Ethiopia)"}, {"acc": "PRJNA1345963", "pmid": "41620544", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Sequencing of stool samples from Ethiopian children from Adama (Ethiopia)"}, {"acc": "PRJNA504891", "pmid": "41620544", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA716780", "pmid": "41620544", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "kiselev da": {"display": "Kiselev DA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA755866", "pmid": "34696436", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viruses in Bats"}, {"acc": "PRJNA755887", "pmid": "34696436", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Viruses in Bats"}]}, "kishikawa t": {"display": "Kishikawa T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "kishima h": {"display": "Kishima H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "kishimoto m": {"display": "Kishimoto M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB5383", "pmid": "28095784", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of a novel bovine enterovirus possessing highly divergent amino acid seque…"}]}, "kiss v": {"display": "Kiss V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "kita d": {"display": "Kita D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11203", "pmid": "34069916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Taxonomic and gene category analysis of subgingival plaques with and without periodontal…"}]}, "kitami t": {"display": "Kitami T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "kitaoka m": {"display": "Kitaoka M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6456", "pmid": "35768643", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "kitchen a": {"display": "Kitchen A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352376", "pmid": "28072390", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}]}, "kitsen j": {"display": "Kitsen J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52147", "pmid": "35440708", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Association Between Milk Feedings in the Preterm Population, the Microbiome and Risk…"}]}, "kittelmann s": {"display": "Kittelmann S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "kiu r": {"display": "Kiu R", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB37883", "pmid": "36906612", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJNA1191223", "pmid": "40813371", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of early life antibiotic and probiotic treatment on gut microbiome and resistome o…"}, {"acc": "PRJNA1230889", "pmid": "42020426", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}, {"acc": "PRJNA1230889", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}, {"acc": "PRJNA518912", "pmid": "37231089", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "kjelleberg s": {"display": "Kjelleberg S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "kjemtrup am": {"display": "Kjemtrup AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1261853", "pmid": "38816345", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia sp. CA6269 genome sequencing from clinical and environmental samples"}]}, "kjetland ef": {"display": "Kjetland EF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "kjolbaek l": {"display": "Kjølbæk L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB25727", "pmid": "31138673", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The impact of AXOS intake in overweight individuals with metabolic syndrome."}]}, "klaassens es": {"display": "Klaassens ES", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}]}, "klavins k": {"display": "Klavins K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62817", "pmid": "38868903", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome encoded purine and amino acid pathways present prospective biomarkers for…"}]}, "klee sm": {"display": "Klee SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA860728", "pmid": "36121157", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "GenCap-Seq Selectively Enriches Bacterial DNA and Enables Genome-wide Measurement of Intr…"}]}, "kleerebezem m": {"display": "Kleerebezem M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}]}, "klein c": {"display": "Klein C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "klein e": {"display": "Klein E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417283", "pmid": "29988506", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}]}, "klein ej": {"display": "Klein EJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "kleine-borgmann lak": {"display": "Kleine-Borgmann LAK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "kleiner m": {"display": "Kleiner M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA377096", "pmid": "31530813", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soda lake innocuated bioreactors"}]}, "kleinewietfeld m": {"display": "Kleinewietfeld M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}]}, "kleinjans l": {"display": "Kleinjans L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB2778", "pmid": "33538807", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}]}, "klepac-ceraj v": {"display": "Klepac-Ceraj V", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1072081", "pmid": "40237336", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Identifying Biomarkers and Trajectories of Typical Neurodevelopment in Children, the BRAI…"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "40586263", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "42311381", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA296814", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA695570", "pmid": "34335499", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "34442687", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "34444993", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "klimenko e": {"display": "Klimenko E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA604466", "pmid": "32939372", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota of adolescens with obesity"}]}, "klincke f": {"display": "Klincke F", "group": false, "n_studies": 35, "studies": [{"acc": "PRJEB15257", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB32631", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB39223", "pmid": "39138199", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB6456", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA231909", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA272371", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA301903", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA436562", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA524703", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA549787", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA557731", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA698986", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA715601", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA716780", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA916952", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Stanford's Outcomes Research in Kids (STORK) Virome"}]}, "kline m": {"display": "Kline M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA610982", "pmid": "33308267", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Determinants of S. aureus carriage in the developing infant nasal microbiome"}]}, "klingenberg c": {"display": "Klingenberg C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB29052", "pmid": "30505830", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJNA1305341", "pmid": "42013844", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "ProRIDE Deep Seq Metagenomics Raw sequence reads"}, {"acc": "PRJNA898628", "pmid": "37187112", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "PINGU Fecal samples Metagenome"}]}, "kloet sl": {"display": "Kloet SL", "group": false, "n_studies": 10, "studies": [{"acc": "PRJDB4176", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1690", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB21528", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB22893", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome impacts response to PD-1 immunotherapy in melanoma patients"}, {"acc": "PRJEB27005", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB39223", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB44737", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJNA231909", "pmid": "39885121", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "39885121", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA48479", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "klopp ah": {"display": "Klopp AH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "klopp j": {"display": "Klopp J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "klotz f": {"display": "Klotz F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884026", "pmid": "36724220", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic investigation of lake Issyk-Kul, Kyrgyzstan"}]}, "klovins j": {"display": "Klovins J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62817", "pmid": "38868903", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome encoded purine and amino acid pathways present prospective biomarkers for…"}]}, "klowak ja": {"display": "Klowak JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA674643", "pmid": "35474894", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Validation of Coronavirus and Sepsis Probe Sets designed using HUBDesign"}]}, "klumper u": {"display": "Klümper U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1262354", "pmid": "41603547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMBARK - Establishing a Monitoring Baseline for Antimicrobial Resistance in Key environme…"}]}, "klun k": {"display": "Klun K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB77875", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Seawater metagenomes collected during Jellyfish enrichment experiment"}, {"acc": "PRJEB85785", "pmid": "41437131", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Seawater Metagenomes from a Wastewater Exposure Experiment"}]}, "kluska a": {"display": "Kluska A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA943135", "pmid": "37577378", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diarrhoeal-associated gut dysbiosis in cancer and inflammatory bowel disease patients i…"}]}, "knecht h": {"display": "Knecht H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB3085", "pmid": "23236009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}]}, "knee j": {"display": "Knee J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1355224", "pmid": "42037384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human metagenomic samples Metagenome"}]}, "knight ak": {"display": "Knight AK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA725416", "pmid": "33996627", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Emory University African American Vaginal, Oral, and Gut Microbiome in Pregnancy Cohort S…"}]}, "knight r": {"display": "Knight R", "group": false, "n_studies": 27, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}, {"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}, {"acc": "PRJEB14474", "pmid": "28539477", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}, {"acc": "PRJEB17694", "pmid": "27912057", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Di…"}, {"acc": "PRJEB20471", "pmid": "20231444", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Forensic identification using skin bacterial communities - keyboard"}, {"acc": "PRJEB20500", "pmid": "20231444", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Forensic identification using skin bacterial communities - mouse"}, {"acc": "PRJEB29078", "pmid": "30352933", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJEB29078", "pmid": "30813950", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJEB29169", "pmid": "31222023", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Establishing microbial composition measurement standards with reference frames"}, {"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}, {"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}, {"acc": "PRJEB49206", "pmid": "28839072", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}, {"acc": "PRJEB49206", "pmid": "30118385", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}, {"acc": "PRJEB52147", "pmid": "35440708", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Association Between Milk Feedings in the Preterm Population, the Microbiome and Risk…"}, {"acc": "PRJNA1086674", "pmid": "39138352", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Impact of Oral Feedings on the Preterm Infant Microbiome and Metabolome"}, {"acc": "PRJNA1445932", "pmid": "42669658", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of a complementary feeding intervention on the gut microbiota in 12-18-month- old…"}, {"acc": "PRJNA145005", "pmid": "22030749", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}, {"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}, {"acc": "PRJNA275349", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA32089", "pmid": "19043404", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}, {"acc": "PRJNA39859", "pmid": "20368178", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Analyses of the human gut microbiome after transplantation into germ-free mice"}, {"acc": "PRJNA43253", "pmid": "20363958", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human fecal microbiome"}, {"acc": "PRJNA48479", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA504891", "pmid": "32427907", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA597371", "pmid": "34193290", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal Selective Pressure and Coevolution Project Part 4 human placebo Metagenome"}, {"acc": "PRJNA602729", "pmid": "34079079", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}, {"acc": "PRJNA613381", "pmid": "32968071", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut…"}, {"acc": "PRJNA624185", "pmid": "33239396", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Deep metagenomics examines the oral microbiome during advanced dental caries in children,…"}]}, "knights d": {"display": "Knights D", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}, {"acc": "PRJNA1019702", "pmid": "39043677", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "39265573", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1198101", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic re-sequencing of human milk"}, {"acc": "PRJNA145005", "pmid": "22030749", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}, {"acc": "PRJNA903921", "pmid": "40469735", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Mycobiome Maturation and Its Determinants during Infancy: A Comparison of Shotgun Met…"}]}, "knijn a": {"display": "Knijn A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB23207", "pmid": "29468143", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic characterization of the human intestinal microbiota in faecal samples from ST…"}]}, "knip m": {"display": "Knip M", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA231909", "pmid": "36195095", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA475246", "pmid": "35685890", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA821542", "pmid": "39551356", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut metagenomes from mothers and their infants in the EDIA study"}]}, "knobloch s": {"display": "Knobloch S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "knol j": {"display": "Knol J", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB2778", "pmid": "33538807", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}, {"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}, {"acc": "PRJNA726032", "pmid": "34172012", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "knoll rl": {"display": "Knoll RL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB76677", "pmid": "28039159", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota differs between children with Inflammatory Bowel Disease and healthy sibli…"}, {"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "knoop c": {"display": "Knoop C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB43581", "pmid": "34295911", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}, {"acc": "PRJEB44898", "pmid": "34295911", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hyperammonemia syndrome following lung transplantation."}]}, "knop fk": {"display": "Knop FK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "knowles scl": {"display": "Knowles SCL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA725899", "pmid": "36747007", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of wild rodent colon, cecum and faeces"}]}, "knudsen gm": {"display": "Knudsen GM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29554870", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "knudsen ks": {"display": "Knudsen KS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58634", "pmid": "40707831", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencin…"}]}, "knuf m": {"display": "Knuf M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "knutson tp": {"display": "Knutson TP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1458854", "pmid": "42370707", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Validation of an Integrated Metagenomic Pipeline Combining Optimized Wet Lab Processing a…"}]}, "ko d": {"display": "Ko D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}, {"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "ko j": {"display": "Ko J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}]}, "kobal t": {"display": "Kobal T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB77729", "pmid": "39714161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "First-Year Dynamics of the Microbiome in Infants’ Oral and Gastrointestinal Systems"}]}, "kober l": {"display": "Køber L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "kobori m": {"display": "Kobori M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893635", "pmid": "36361763", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}, {"acc": "PRJNA893635", "pmid": "37297350", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}]}, "kocakahya i": {"display": "Kocakahya İ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1375659", "pmid": "42003651", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Antibiotic resistance gene profile in pigeon fecal microbiomes by shotgun metagenomics"}]}, "koch l": {"display": "Koch L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "koch m": {"display": "Koch M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1143669", "pmid": "39707483", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of neonates exposed to HIV"}]}, "kochen rossi ja": {"display": "Kochen Rossi JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}]}, "kocher a": {"display": "Kocher A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "kociolek j": {"display": "Kociolek J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912638", "pmid": "37213047", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MICROBIOME IN AGING GUT AND BRAIN (MiaGB) STUDY"}]}, "kodama m": {"display": "Kodama M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64334", "pmid": "38294254", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Multi-omics of host-gut microbiota interactions in healthy and parasitized farmed Atlanti…"}]}, "kodukula r": {"display": "Kodukula R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA383868", "pmid": "28910633", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}]}, "koelle dm": {"display": "Koelle DM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28287142", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28711653", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29281620", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29554870", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29898986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30383234", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "koeppel af": {"display": "Koeppel AF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA812770", "pmid": null, "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Lake Erie eDNA HAB samples"}]}, "koerkamp bg": {"display": "Koerkamp BG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "koessler t": {"display": "Koessler T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43581", "pmid": "34737977", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}]}, "kofonow jm": {"display": "Kofonow JM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA845806", "pmid": "35966074", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Trial of Diet in Gestational Diabetes Mellitus: Metabolic Consequences to Mother and Offs…"}, {"acc": "PRJNA884688", "pmid": "36778973", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiota and protein source"}]}, "koganebuchi k": {"display": "Koganebuchi K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB15258", "pmid": "38265980", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of 7,000 to 5,500 years old coprolites excavated from the Torihama s…"}]}, "kogawa m": {"display": "Kogawa M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA692334", "pmid": "34641955", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Recovery of high-quality assembled genomes via single-cell genome-guided binning of metag…"}]}, "koh ay": {"display": "Koh AY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA311208", "pmid": "27406942", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Severe gut microbiota dysbiosis is associated with poor growth in patients with short bow…"}]}, "koh xq": {"display": "Koh XQ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB17097", "pmid": "40226095", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "St Johns Island Resistome project"}]}, "koh ym": {"display": "Koh YM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "kohar h": {"display": "Kohar H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "kohler tj": {"display": "Kohler TJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA781406", "pmid": "35444202", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Vanishing Glaciers Project"}]}, "kohli gs": {"display": "Kohli GS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396840", "pmid": "28979798", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomic and metatranscriptomic analysis of saliva reveals disease-associated microbio…"}]}, "kohtz aj": {"display": "Kohtz AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}]}, "koinis-mitchell d": {"display": "Koinis-Mitchell D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "koirala j": {"display": "Koirala J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081394", "pmid": "38564694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sinus, throat, and sputum airway microbiology in cystic fibrosis"}]}, "koivusaari p": {"display": "Koivusaari P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA543520", "pmid": "31337807", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}]}, "kojima d": {"display": "Kojima D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA741607", "pmid": "38540144", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Inhibitory Effects of Lactulose on Colitis-Associated Carcinogenesis by Restoration of th…"}, {"acc": "PRJNA835973", "pmid": "38540144", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Lactobacillus rhamnosus Probio-M9 alleviates colitis-associated tumorigenesis via modifie…"}]}, "kojima y": {"display": "Kojima Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "koju np": {"display": "Koju NP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29668933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "kok j": {"display": "Kok J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}, {"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "kok yj": {"display": "Kok YJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "kolar j": {"display": "Kolář J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "kolb m": {"display": "Kolb M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB25228", "pmid": "31616669", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Cardiobacterium hominis"}]}, "kolczynski d": {"display": "Kolczynski D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202388", "pmid": "25028422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "kolde r": {"display": "Kolde R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "koletsi s": {"display": "Koletsi S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59994", "pmid": "37892187", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evaluation of an Adapted Semi-Automated DNA Extraction for Human Salivary Shotgun Metagen…"}]}, "kolho k-l": {"display": "Kolho K-L", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB29078", "pmid": "37874156", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJEB89462", "pmid": "41873970", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of phage enrichment on the observed infant gut phageome"}, {"acc": "PRJNA296814", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA322188", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}]}, "kolho kl": {"display": "Kolho KL", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB52774", "pmid": "31253623", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB52774", "pmid": "36274732", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB52774", "pmid": "37731926", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB64567", "pmid": "33007265", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Maternal FMT in Cesarean-Born Infants - WGS sequencing of infants (1w to 1year) and mater…"}, {"acc": "PRJEB70237", "pmid": "38838470", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB70237", "pmid": "39092808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "kolie e": {"display": "Kolie E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "kollanoor johny a": {"display": "Kollanoor Johny A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1252780", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Effect of anitbiotic alternatives on cecal microbiome of Salmonella Heidelberg-challenged…"}]}, "kolmeder c": {"display": "Kolmeder C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27325", "pmid": "30326954", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}]}, "kolokotronis so": {"display": "Kolokotronis SO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "kolotkin rl": {"display": "Kolotkin RL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "kolovetsiou-kreiner v": {"display": "Kolovetsiou-Kreiner V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB77729", "pmid": "39714161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "First-Year Dynamics of the Microbiome in Infants’ Oral and Gastrointestinal Systems"}]}, "kolsteren p": {"display": "Kolsteren P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1113165", "pmid": "40102379", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}]}, "komarow hd": {"display": "Komarow HD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46333", "pmid": "22310478", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "komatsu n": {"display": "Komatsu N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB15907", "pmid": "37621086", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alpha-HPV-targeted sequence for cervical swab specimens"}]}, "kommadath a": {"display": "Kommadath A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA779404", "pmid": "39584815", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Florfenicol treatment and the piglet gut microbiome"}]}, "konczalla l": {"display": "Konczalla L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "kong aps": {"display": "Kong APS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}]}, "kong d": {"display": "Kong D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB29030", "pmid": "38338730", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lettuce Microbiome (PRJCA018891)"}]}, "kong hh": {"display": "Kong HH", "group": false, "n_studies": 9, "studies": [{"acc": "PRJNA1111475", "pmid": "39813050", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics in patients with central centrifugal cicatricial alopecia (CCCA)"}, {"acc": "PRJNA1162089", "pmid": "40730159", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}, {"acc": "PRJNA1369410", "pmid": "42242497", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics sequencing from patients with CD4 lymphopenia"}, {"acc": "PRJNA46333", "pmid": "22310478", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "23050952", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "23698366", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "24170601", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "25279917", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "28679656", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "37054678", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA471898", "pmid": "30397357", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The skin microbiome of DOCK8-deficient patients"}, {"acc": "PRJNA604820", "pmid": "34936382", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin metagenome from antibiotics treated healthy human subjects"}, {"acc": "PRJNA642893", "pmid": "33212154", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin microbiome from cutaneous T-cell lymphoma patients and healthy volunteers"}, {"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "kong lc": {"display": "Kong LC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4413", "pmid": "23985875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary intervention impact on gut microbial gene richness based on SOLiD next generation…"}]}, "kong st": {"display": "Kong ST", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA787952", "pmid": "35239511", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}]}, "kong x": {"display": "Kong X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA719915", "pmid": "34465850", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tumor microbiome contributes to an aggressive phenotype in the basal-like subtype of panc…"}]}, "konig ir": {"display": "König IR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "konstantinidis kt": {"display": "Konstantinidis KT", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA486009", "pmid": "33452027", "pos": "last", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Genome diversity of pathogenic Escherichia coli in Ecuador"}, {"acc": "PRJNA747761", "pmid": "37938667", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Atlanta, USA and Maputo, Mozambique Children gut microbiome Metagenome"}]}, "koo h": {"display": "Koo H", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB32631", "pmid": "32431894", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA288562", "pmid": "32431894", "pos": "first", "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}, {"acc": "PRJNA593263", "pmid": "32431894", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Feces metagenome"}, {"acc": "PRJNA930375", "pmid": "37264481", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Addition of cariogenic pathogens to complex oral microbiota drives significant changes in…"}]}, "koo i": {"display": "Koo I", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "kool j": {"display": "Kool J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44119", "pmid": "35659906", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut colonisation by extended-spectrum β-lactamase-producing Escherichia coli and its asso…"}]}, "koonin ev": {"display": "Koonin EV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA605028", "pmid": "32690954", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Genome sequencing and assembly"}]}, "koopen am": {"display": "Koopen AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "kootte rs": {"display": "Kootte RS", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB46778", "pmid": "28978426", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "kopera k": {"display": "Kopera K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "kopetzky j": {"display": "Kopetzky J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1092681", "pmid": "38696336", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Validation of an automated, end-to-end metagenomic sequencing assay for agnostic detectio…"}]}, "koplovitz g": {"display": "Koplovitz G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "kopp bt": {"display": "Kopp BT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1015704", "pmid": "40042126", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal and oropharyngeal microbiota from infants with cystic fibrosis on and off beta-lact…"}]}, "kopp ew": {"display": "Kopp EW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "kopp mv": {"display": "Kopp MV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "koppe l": {"display": "Koppe L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "koppel n": {"display": "Koppel N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA559861", "pmid": "32544460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cholesterol Metabolism by Uncultured Human Gut Bacteria Influences Host Cholesterol Level."}]}, "koppelman gh": {"display": "Koppelman GH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "kopylova e": {"display": "Kopylova E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "32427907", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA772730", "pmid": "35071138", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The FOUNDATION Study: Hospital Formulation Of B. infantis EVC001 Utilized In The NICU To…"}]}, "kopytek a": {"display": "Kopytek A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473348", "pmid": "36217535", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effect of bariatric surgery on the faecal metagenome"}]}, "korczak dj": {"display": "Korczak DJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "korem t": {"display": "Korem T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "koren o": {"display": "Koren O", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA321218", "pmid": "24137540", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA606271", "pmid": "33500411", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "korneenko ev": {"display": "Korneenko EV", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA755866", "pmid": "34696436", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viruses in Bats"}, {"acc": "PRJNA755887", "pmid": "34696436", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Viruses in Bats"}]}, "kornell sc": {"display": "Kornell SC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}]}, "korner t": {"display": "Körner T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "kornowski r": {"display": "Kornowski R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "korostoff j": {"display": "Korostoff J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA930375", "pmid": "37264481", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Addition of cariogenic pathogens to complex oral microbiota drives significant changes in…"}]}, "korotkov a": {"display": "Korotkov A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "korpela k": {"display": "Korpela K", "group": false, "n_studies": 19, "studies": [{"acc": "PRJEB10914", "pmid": "36093611", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Developmental Ecology of the Human Microbiome - Restoration Study of babies."}, {"acc": "PRJEB11685", "pmid": "26811868", "pos": "first", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children"}, {"acc": "PRJEB24041", "pmid": "29496731", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Selective maternal seeding and environment shape the human gut microbiome"}, {"acc": "PRJEB27325", "pmid": "30214024", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}, {"acc": "PRJEB27325", "pmid": "30326954", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}, {"acc": "PRJEB27325", "pmid": "36093611", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}, {"acc": "PRJEB32631", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB51728", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB52774", "pmid": "31253623", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB52774", "pmid": "36274732", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB6456", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB64567", "pmid": "33007265", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Maternal FMT in Cesarean-Born Infants - WGS sequencing of infants (1w to 1year) and mater…"}, {"acc": "PRJEB89462", "pmid": "41873970", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of phage enrichment on the observed infant gut phageome"}, {"acc": "PRJNA322188", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA352475", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA473126", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA549787", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA595749", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}, {"acc": "PRJNA701480", "pmid": "36093611", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Vaginal seeding in babies born by caesarean section (ECOBABe trial) - shotgun metagenomic…"}, {"acc": "PRJNA898628", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "PINGU Fecal samples Metagenome"}]}, "korrick sa": {"display": "Korrick SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "32968156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "korytny a": {"display": "Korytny A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA628604", "pmid": "32511695", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}]}, "kos d": {"display": "Kos D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1279254", "pmid": "41562608", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of synovial joint fluid collected from feedlot cattle. Raw sequenc…"}]}, "kosciolek t": {"display": "Kosciolek T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "kosek m": {"display": "Kosek M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "39341154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "kosek mn": {"display": "Kosek MN", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA834762", "pmid": "36194603", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "36251729", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "38427700", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA837236", "pmid": "36194603", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "36251729", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "38427700", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA912682", "pmid": "38272215", "pos": "last", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "38427700", "pos": "last", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "39727415", "pos": "last", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}]}, "koser k": {"display": "Koser K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "kosoko-thoroddsen tf": {"display": "Kosoko-Thoroddsen TF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA623215", "pmid": "32349121", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing to evaluate massively multiplexed detection with Cas13"}]}, "kosower n": {"display": "Kosower N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "kostic a": {"display": "Kostic A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}]}, "kostic ad": {"display": "Kostic AD", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}, {"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "kostovova i": {"display": "Kostovova I", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB12124", "pmid": "38652229", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-dependent stratification of patients for anti-diabetic treatment"}, {"acc": "PRJNA563062", "pmid": "38652229", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Capybara (Hydrochoerus hydrochaeris) Metagenome"}, {"acc": "PRJNA684904", "pmid": "38652229", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "human gut metagenome Genome sequencing and assembly"}, {"acc": "PRJNA747761", "pmid": "38652229", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Atlanta, USA and Maputo, Mozambique Children gut microbiome Metagenome"}]}, "kot w": {"display": "Kot W", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1094595", "pmid": "39449043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "SSLR"}, {"acc": "PRJNA926386", "pmid": "37635262", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Phagestorage"}]}, "kotfis k": {"display": "Kotfis K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "kothe ci": {"display": "Kothe CI", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA943417", "pmid": "37919016", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Six novel misos"}, {"acc": "PRJNA992639", "pmid": "38876584", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Novel misos shape distinct microbial ecologies"}]}, "kotliar d": {"display": "Kotliar D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "kotov ia": {"display": "Kotov IA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA755866", "pmid": "34696436", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viruses in Bats"}, {"acc": "PRJNA755887", "pmid": "34696436", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Viruses in Bats"}]}, "kottapalli k": {"display": "Kottapalli K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "kottler r": {"display": "Kottler R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52748", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome function and composition in infants from rural Kenya and association with…"}, {"acc": "PRJEB6456", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "kotwal s": {"display": "Kotwal S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}]}, "kou y": {"display": "Kou Y", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB23524", "pmid": "38868710", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS data from FMT trial for the treatment of recurrent Clostridium difficile infection"}, {"acc": "PRJEB6456", "pmid": "38868710", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA285502", "pmid": "38868710", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota transplantation (FMT) for ulcerative colitis"}, {"acc": "PRJNA625520", "pmid": "38868710", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Linking strain engraftment in fecal microbiota transplantation with maintenance of remiss…"}]}, "koulman a": {"display": "Koulman A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "koundouno fr": {"display": "Koundouno FR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "kouris a": {"display": "Kouris A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA377096", "pmid": "35222325", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soda lake innocuated bioreactors"}]}, "kourouma k": {"display": "Kourouma K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "kovalenko g": {"display": "Kovalenko G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1198110", "pmid": "40439559", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Clinical infection by Francisella tularensis ssp. holarctica in stranded beluga whales fr…"}]}, "kovatcheva-datchary p": {"display": "Kovatcheva-Datchary P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB127029", "pmid": "26552345", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abun…"}]}, "koyama s": {"display": "Koyama S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "koyasu s": {"display": "Koyasu S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "koyuturk m": {"display": "Koyuturk M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746290", "pmid": "35210415", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Circulating Microbiome in Myeloid Malignancy"}]}, "kozakaite j": {"display": "Kozakaitė J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37508", "pmid": "32528126", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "A treponemal genome from an historic plague victim supports recent emergence of yaws and…"}]}, "kozhakhmetov s": {"display": "Kozhakhmetov S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1217583", "pmid": "40299456", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic predictors of childhood obesity, cross-talk with maternal microflora"}, {"acc": "PRJNA949528", "pmid": "37308527", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}, {"acc": "PRJNA949528", "pmid": "40299456", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}, {"acc": "PRJNA949528", "pmid": "40399402", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}, {"acc": "PRJNA973824", "pmid": "40399402", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Immunoregulatory role of gut microbiome and mycobiome in aging"}]}, "kozhakhmetova s": {"display": "Kozhakhmetova S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1217583", "pmid": "40299456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic predictors of childhood obesity, cross-talk with maternal microflora"}, {"acc": "PRJNA949528", "pmid": "37308527", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}, {"acc": "PRJNA949528", "pmid": "40299456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}]}, "kozyrskyj al": {"display": "Kozyrskyj AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA838575", "pmid": "37644001", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "42337243", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "krainz l": {"display": "Krainz L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081394", "pmid": "38564694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sinus, throat, and sputum airway microbiology in cystic fibrosis"}]}, "krajmalnik-brown r": {"display": "Krajmalnik-Brown R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB17694", "pmid": "27912057", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Di…"}]}, "krakowka s": {"display": "Krakowka S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA484151", "pmid": "31379808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural and Urban infant''s fecal microbiota study"}]}, "krakstrom m": {"display": "Kråkström M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "kramer a": {"display": "Krämer A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "kramna l": {"display": "Kramna L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445932", "pmid": "29297933", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA445932", "pmid": "30121305", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}]}, "kraneveld ad": {"display": "Kraneveld AD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542703", "pmid": "42131447", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}]}, "krannich a": {"display": "Krannich A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}]}, "kraschl r": {"display": "Kraschl R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": "29152325", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": "32354144", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "krasnopeev ay": {"display": "Krasnopeev AY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA547700", "pmid": "31671744", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lake Baikal Viromes Raw sequence reads"}]}, "krause h": {"display": "Krause H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078280", "pmid": "38405928", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Quantifying forms and functions of intestinal bile acid pools in mice"}]}, "krause j": {"display": "Krause J", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}, {"acc": "PRJEB24921", "pmid": "29745896", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}, {"acc": "PRJEB41353", "pmid": "33997698", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Mass burial genomics reveals outbreak of enteric paratyphoid fever in the Late Medieval t…"}, {"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}, {"acc": "PRJNA417381", "pmid": "29746563", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}, {"acc": "PRJNA445215", "pmid": "29959351", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "krause l": {"display": "Krause L", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB14969", "pmid": "27694811", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dairy and plant based food intakes are associated with altered faecal microbiota in 2 to…"}, {"acc": "PRJNA1200893", "pmid": "41809988", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}, {"acc": "PRJNA506325", "pmid": "23102968", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Phages Raw sequence reads"}]}, "krause-kyora b": {"display": "Krause-Kyora B", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}, {"acc": "PRJEB24921", "pmid": "29745896", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}, {"acc": "PRJEB36413", "pmid": "32884081", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Yersinia pestis strains from Latvia show depletion of the pla virulence gene at the end o…"}, {"acc": "PRJEB41353", "pmid": "33997698", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Mass burial genomics reveals outbreak of enteric paratyphoid fever in the Late Medieval t…"}, {"acc": "PRJEB42185", "pmid": "34192537", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}, {"acc": "PRJEB49648", "pmid": "39155318", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Neolithic Yersinia pestis infections in humans and a dog"}, {"acc": "PRJEB66169", "pmid": "41540446", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient DNA study provides clues to leprosy susceptibility in medieval Europe"}, {"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "krausz kw": {"display": "Krausz KW", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "krautbauer s": {"display": "Krautbauer S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB25727", "pmid": "31138673", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The impact of AXOS intake in overweight individuals with metabolic syndrome."}, {"acc": "PRJEB36898", "pmid": "33629506", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics analysis on overweight subjects under a caloric restriction intervention with…"}]}, "krebs j": {"display": "Krebs J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1139160", "pmid": "40229352", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uro-Vaxom Pilot"}]}, "krebs nf": {"display": "Krebs NF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884688", "pmid": "36778973", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiota and protein source"}]}, "krekels jpm": {"display": "Krekels JPM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87602", "pmid": "37243505", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteria in colitis associated cancer development"}]}, "kremsner pg": {"display": "Kremsner PG", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46788", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB86954", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Integrating Metagenomics for Helminth Detection"}, {"acc": "PRJNA48479", "pmid": "41358671", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "kress am": {"display": "Kress AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "krezalek m": {"display": "Krezalek M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14474", "pmid": "28539477", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}]}, "kribs a": {"display": "Kribs A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "krifucks o": {"display": "Krifucks O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA598014", "pmid": "34454634", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Broiler Chicken Cloacal and Litter Meta-genomic Samples"}]}, "kriiska a": {"display": "Kriiska A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "kriko e": {"display": "Krikó E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA591315", "pmid": "32366826", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "raw milk metagenome"}]}, "krip k": {"display": "Krip K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "krischer jp": {"display": "Krischer JP", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA268964", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA392180", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA485056", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA497734", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "krishna a": {"display": "Krishna A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA289586", "pmid": "27723761", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}]}, "krishnan s": {"display": "Krishnan S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15633", "pmid": "28079170", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}]}, "kristensen jm": {"display": "Kristensen JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1033532", "pmid": "38014294", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Evaluating the impact of pharmaceuticals on the human gut microbiome Raw sequence reads"}]}, "kristiansen k": {"display": "Kristiansen K", "group": false, "n_studies": 15, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB15111", "pmid": "26932197", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}, {"acc": "PRJEB26795", "pmid": "30609941", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJEB64334", "pmid": "38294254", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Multi-omics of host-gut microbiota interactions in healthy and parasitized farmed Atlanti…"}, {"acc": "PRJEB6456", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB84944", "pmid": "40885737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of 56 mother-infant dyads from the ALADDIN birth cohort"}, {"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}, {"acc": "PRJEB97976", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome maturation during weaning"}, {"acc": "PRJEB97980", "pmid": "42203770", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential impact of doxycycline treatment on antimicrobial resistance genes in the enteri…"}, {"acc": "PRJEB98012", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Creeping Fat"}, {"acc": "PRJEB98069", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Distinct Microbial and Resistome Signatures Differentiate Healthy and Inflamed Ileal Pouc…"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA633381", "pmid": "33662387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "IgA deficiency microbiota"}]}, "kroemer g": {"display": "Kroemer G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}, {"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "krog mc": {"display": "Krog MC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37731", "pmid": "33208514", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "33816334", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "35553675", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "39015337", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "39160615", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "42203854", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB38528", "pmid": "42203854", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}]}, "krog rt": {"display": "Krog RT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "krogfelt ka": {"display": "Krogfelt KA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB84944", "pmid": "40885737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of 56 mother-infant dyads from the ALADDIN birth cohort"}]}, "krogh pedersen h": {"display": "Krogh Pedersen H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54707", "pmid": "35990340", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, 2-HMO vs. control formula"}]}, "krohn i": {"display": "Krohn I", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB40662", "pmid": "34675897", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Deep (Meta)genomics and (Meta)transcriptome Analyses of Fungal and Bacteria Consortia Fro…"}, {"acc": "PRJNA240141", "pmid": "36284144", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "krohn-molt i": {"display": "Krohn-Molt I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15376", "pmid": "29067007", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome, metatranscriptome and exo-proteome analyses identify molecular keys and main…"}]}, "krolewiecki aj": {"display": "Krolewiecki AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "kroll js": {"display": "Kroll JS", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB15257", "pmid": "28149696", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB15257", "pmid": "34362295", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJNA1191223", "pmid": "40813371", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of early life antibiotic and probiotic treatment on gut microbiome and resistome o…"}, {"acc": "PRJNA46337", "pmid": "28274256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "krometis la": {"display": "Krometis LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA506850", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "USDA Developing Computational Tools To Identify Critical Control Points For Mitigating Th…"}]}, "kronig i": {"display": "Kronig I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60931", "pmid": "37735787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Mycoplasma genitalium endocarditis"}]}, "krueger a": {"display": "Krueger A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA398089", "pmid": "35614211", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}]}, "kruk m": {"display": "Kruk M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "krukowski h": {"display": "Krukowski H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "krupovic m": {"display": "Krupovic M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB46489", "pmid": "35848130", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In situ characterization of the genomic content of viruses of methanogenic archaea in ana…"}, {"acc": "PRJNA605028", "pmid": "32690954", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Genome sequencing and assembly"}]}, "krych l": {"display": "Krych L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1094595", "pmid": "39449043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "SSLR"}]}, "krystallas a": {"display": "Krystallas A", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "kryukov k": {"display": "Kryukov K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB8125", "pmid": "31549291", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metaviromic analyses on crane fecal samples"}]}, "kuang ys": {"display": "Kuang YS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA312041", "pmid": "27226242", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human fecal raw sequence reads"}]}, "kubasova t": {"display": "Kubasova T", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB12124", "pmid": "38652229", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-dependent stratification of patients for anti-diabetic treatment"}, {"acc": "PRJNA563062", "pmid": "38652229", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Capybara (Hydrochoerus hydrochaeris) Metagenome"}, {"acc": "PRJNA684904", "pmid": "38652229", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "human gut metagenome Genome sequencing and assembly"}, {"acc": "PRJNA747761", "pmid": "38652229", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Atlanta, USA and Maputo, Mozambique Children gut microbiome Metagenome"}]}, "kubinski r": {"display": "Kubinski R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA925842", "pmid": "36750571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut bacteria glycan metabolism - Raw sequence reads"}]}, "kubiski sv": {"display": "Kubiski SV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA495079", "pmid": "31097029", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "New circovirus infecting phyton liver"}]}, "kublin j": {"display": "Kublin J", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB6456", "pmid": "39428758", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA475246", "pmid": "39428758", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA486782", "pmid": "39428758", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA510445", "pmid": "39428758", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "39428758", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA630999", "pmid": "39428758", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "39428758", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}]}, "kubota n": {"display": "Kubota N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "kubota t": {"display": "Kubota T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "kuch m": {"display": "Kuch M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA352376", "pmid": "28072390", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA674643", "pmid": "35474894", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Validation of Coronavirus and Sepsis Probe Sets designed using HUBDesign"}]}, "kuehn sr": {"display": "Kuehn SR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657304", "pmid": "33542301", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun Sequencing of Dog Coprolites"}]}, "kuehnast t": {"display": "Kuehnast T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": null, "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "kuelbs c": {"display": "Kuelbs C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA383868", "pmid": "28910633", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "30482830", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "32409670", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}]}, "kuenzli e": {"display": "Kuenzli E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35490", "pmid": "32187006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tick-Borne Relapsing Fever caused by Borrelia persica in a Traveler returning from Centra…"}]}, "kugathasan s": {"display": "Kugathasan S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}]}, "kuger v": {"display": "Kuger V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76913", "pmid": "39881980", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors affecting the gut microbiota composition of children with CHD"}]}, "kuhn m": {"display": "Kuhn M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}]}, "kuhnert d": {"display": "Kühnert D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}]}, "kuijper ej": {"display": "Kuijper EJ", "group": false, "n_studies": 13, "studies": [{"acc": "PRJDB4176", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1690", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB21528", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB22893", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome impacts response to PD-1 immunotherapy in melanoma patients"}, {"acc": "PRJEB27005", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB39223", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB44119", "pmid": "35659906", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut colonisation by extended-spectrum β-lactamase-producing Escherichia coli and its asso…"}, {"acc": "PRJEB44737", "pmid": "34126062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB44737", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJNA1121295", "pmid": "38964511", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FEDEX Study Fecal Metagenomes"}, {"acc": "PRJNA231909", "pmid": "39885121", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "39885121", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA48479", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "kuipers f": {"display": "Kuipers F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "kuitunen m": {"display": "Kuitunen M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27325", "pmid": "30214024", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}, {"acc": "PRJEB27325", "pmid": "30326954", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}]}, "kujawska m": {"display": "Kujawska M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB22207", "pmid": "31844297", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJEB37883", "pmid": "36906612", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJNA1230889", "pmid": "42020426", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}, {"acc": "PRJNA1230889", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}]}, "kukkonen k": {"display": "Kukkonen K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27325", "pmid": "30214024", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}, {"acc": "PRJEB27325", "pmid": "30326954", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}]}, "kulakov la": {"display": "Kulakov LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB30955", "pmid": "30625669", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic Characterization of Viral and Bacterial Communities in Groundwater Associated…"}]}, "kulecka m": {"display": "Kulecka M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA943135", "pmid": "37577378", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diarrhoeal-associated gut dysbiosis in cancer and inflammatory bowel disease patients i…"}]}, "kulesa a": {"display": "Kulesa A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA623215", "pmid": "32349121", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing to evaluate massively multiplexed detection with Cas13"}]}, "kulka m": {"display": "Kulka M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA490509", "pmid": "26823589", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Raw sequence reads of multiple foodborne viruses from outbreaks or sporatic cased in US"}, {"acc": "PRJNA490509", "pmid": "28408676", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Raw sequence reads of multiple foodborne viruses from outbreaks or sporatic cased in US"}]}, "kulkarni cv": {"display": "Kulkarni CV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "kulkarni k": {"display": "Kulkarni K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB29237", "pmid": "30838178", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}, {"acc": "PRJEB29237", "pmid": "35967843", "pos": "last", "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}, {"acc": "PRJEB29237", "pmid": "36909730", "pos": "last", "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}, {"acc": "PRJEB41463", "pmid": "35967843", "pos": "last", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB41463", "pmid": "36909730", "pos": "last", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB59728", "pmid": "36909730", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "This study examined pediatric patients undergoing treatment for various cancers and exami…"}]}, "kullmer u": {"display": "Kullmer U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76677", "pmid": "28039159", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota differs between children with Inflammatory Bowel Disease and healthy sibli…"}]}, "kultima jr": {"display": "Kultima JR", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB20308", "pmid": "29669589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Similarity of the dog and human gut microbiomes in gene content and response to diet"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJEB76677", "pmid": "28039159", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota differs between children with Inflammatory Bowel Disease and healthy sibli…"}]}, "kumagai m": {"display": "Kumagai M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB15258", "pmid": "38265980", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of 7,000 to 5,500 years old coprolites excavated from the Torihama s…"}]}, "kumagai s": {"display": "Kumagai S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "kumanogoh a": {"display": "Kumanogoh A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "kumar a": {"display": "Kumar A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912638", "pmid": "37213047", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MICROBIOME IN AGING GUT AND BRAIN (MiaGB) STUDY"}]}, "kumar h": {"display": "Kumar H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA384716", "pmid": "30250208", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "kumar j": {"display": "Kumar J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1304237", "pmid": "41017911", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota Signatures in Indian Preterm Infants with Necrotizing Enterocolitis"}]}, "kumar kr": {"display": "Kumar KR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "kumar n": {"display": "Kumar N", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB8956", "pmid": "34586399", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An efficient and accurate reconstruction of the full-length phage genomes by chimera-free…"}, {"acc": "PRJEB32631", "pmid": "31534227", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}]}, "kumar ps": {"display": "Kumar PS", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA417283", "pmid": "38058267", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA508385", "pmid": "27991530", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Comparative metagenomics reveals taxonomically idiosyncratic yet functionally congruent c…"}]}, "kumar r": {"display": "Kumar R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542320", "pmid": "31700190", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacteria Genome sequencing and assembly"}]}, "kumar s": {"display": "Kumar S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1076911", "pmid": "38995243", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant and maternal gut microbiomes"}]}, "kumari ks": {"display": "Kumari KS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1020650", "pmid": "36676144", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Apical Periodontal sample Metagenomes"}]}, "kumari s": {"display": "Kumari S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "kumburu hh": {"display": "Kumburu HH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73590", "pmid": "37111504", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}, {"acc": "PRJEB73590", "pmid": "38235427", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}]}, "kumpitsch c": {"display": "Kumpitsch C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37883", "pmid": "36906612", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB77729", "pmid": "39714161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "First-Year Dynamics of the Microbiome in Infants’ Oral and Gastrointestinal Systems"}]}, "kunath bj": {"display": "Kunath BJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "kunisawa j": {"display": "Kunisawa J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB14457", "pmid": "36363762", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of healthy Japanese adult"}]}, "kunovac kallak t": {"display": "Kunovac Kallak T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62678", "pmid": "31641004", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "BASIC: Biology, Affect, Stress, Imaging and Cognition in pregnancy"}]}, "kuns rd": {"display": "Kuns RD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA544874", "pmid": "31928131", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome analysis of mice in association with graft-vs-host disease"}]}, "kuntz m": {"display": "Kuntz M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "kuntz tm": {"display": "Kuntz TM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1295573", "pmid": "41760690", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The intestinal microbiome of patients with newly diagnosed invasive breast cancer and duc…"}, {"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "kunz c": {"display": "Kunz C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27325", "pmid": "30214024", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}, {"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "kunz s": {"display": "Kunz S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "kuo ch": {"display": "Kuo CH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762484", "pmid": "34996879", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota in patients with Parkinson disease"}]}, "kupczok a": {"display": "Kupczok A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41353", "pmid": "33997698", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Mass burial genomics reveals outbreak of enteric paratyphoid fever in the Late Medieval t…"}]}, "kuppermann n": {"display": "Kuppermann N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1148144", "pmid": "40128855", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Biosignatures of late-onset extraintestinal bacterial infections"}]}, "kurahara lh": {"display": "Kurahara LH", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA694773", "pmid": "33808480", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Inhibitory effects of breast milk-derived Lactobacillus rhamnosus Probio-M9 on colitis-as…"}, {"acc": "PRJNA741607", "pmid": "38540144", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Inhibitory Effects of Lactulose on Colitis-Associated Carcinogenesis by Restoration of th…"}, {"acc": "PRJNA835973", "pmid": "38540144", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Lactobacillus rhamnosus Probio-M9 alleviates colitis-associated tumorigenesis via modifie…"}]}, "kurath-koller s": {"display": "Kurath-Koller S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": "29152325", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": "32354144", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": "36906612", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "kurilshikov a": {"display": "Kurilshikov A", "group": false, "n_studies": 14, "studies": [{"acc": "PRJEB32631", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB46943", "pmid": "40615392", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB51728", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB6456", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}, {"acc": "PRJNA322188", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA352475", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA473126", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA524703", "pmid": "40615392", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA549787", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA595749", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}, {"acc": "PRJNA898628", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "PINGU Fecal samples Metagenome"}]}, "kurkimat s": {"display": "Kurkimat S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60914", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Roles of gut microbiota-mediated nutrient competition and metabolite inhibition in the in…"}]}, "kuroda m": {"display": "Kuroda M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352376", "pmid": "28072390", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}]}, "kurtzhals jal": {"display": "Kurtzhals JAL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA592050", "pmid": "31738985", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Air genomes from surgical room Raw sequence reads"}]}, "kurz e": {"display": "Kurz E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}]}, "kusebauch u": {"display": "Kusebauch U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}]}, "kushugulova a": {"display": "Kushugulova A", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1217583", "pmid": "40299456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic predictors of childhood obesity, cross-talk with maternal microflora"}, {"acc": "PRJNA949528", "pmid": "37308527", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}, {"acc": "PRJNA949528", "pmid": "40299456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}, {"acc": "PRJNA949528", "pmid": "40399402", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}, {"acc": "PRJNA973824", "pmid": "40399402", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Immunoregulatory role of gut microbiome and mycobiome in aging"}]}, "kutluk g": {"display": "Kutluk G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "kuypers j": {"display": "Kuypers J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA907865", "pmid": "37486790", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhinovirus raw sequence reads"}]}, "kuypers jm": {"display": "Kuypers JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "27795347", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28379561", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28838146", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30576430", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "kuzub n": {"display": "Kuzub N", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46943", "pmid": "40615392", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": null, "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}, {"acc": "PRJNA524703", "pmid": "40615392", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}]}, "kvan np": {"display": "Kvan NP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "kwan sy": {"display": "Kwan SY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA734860", "pmid": "32258950", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA734860", "pmid": "34633706", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA734860", "pmid": "35477306", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}]}, "kwasiborski a": {"display": "Kwasiborski A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1004259", "pmid": "38047654", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic and Amplicon-based Nanopore Sequencing of French Human Monkeypox direct from…"}]}, "kwok ly": {"display": "Kwok LY", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA810575", "pmid": "36419187", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes of maternal and infant faecal samples"}, {"acc": "PRJNA902684", "pmid": "39135694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome level reveals the regulatory effect of probiotics to mastitis rats"}]}, "kwon at": {"display": "Kwon AT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "kwon da": {"display": "Kwon DA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA875570", "pmid": "38217803", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of microbial communities in gradient zones of the sedimentary strata…"}]}, "kwon ds": {"display": "Kwon DS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "kyara y": {"display": "Kyara Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73590", "pmid": "37111504", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}]}, "kyes rc": {"display": "Kyes RC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29668933", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "kylies d": {"display": "Kylies D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "kytoviita m": {"display": "Kytöviita M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "la fuente castro c": {"display": "la Fuente Castro C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB104199", "pmid": "42531397", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "The genomic identity of early smallpox in South America"}]}, "la rosa sl": {"display": "La Rosa SL", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA400072", "pmid": "41299229", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA615162", "pmid": "41299229", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA821542", "pmid": "41299229", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut metagenomes from mothers and their infants in the EDIA study"}]}, "labaj pp": {"display": "Łabaj PP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "labi ak": {"display": "Labi AK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA592050", "pmid": "31738985", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Air genomes from surgical room Raw sequence reads"}]}, "labrune c": {"display": "Labrune C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "labyak ca": {"display": "Labyak CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912638", "pmid": "37213047", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MICROBIOME IN AGING GUT AND BRAIN (MiaGB) STUDY"}]}, "lacerda-junior gv": {"display": "Lacerda-Júnior GV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29861", "pmid": "31550653", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "UNVEILING RESISTOME PROFILES IN THE SEDIMENTS OF AN ANTARCTIC VOLCANIC ISLAND"}]}, "lachat c": {"display": "Lachat C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1113165", "pmid": "40102379", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}]}, "lacher dw": {"display": "Lacher DW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA336518", "pmid": "29954907", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA336518", "pmid": "29954914", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA336518", "pmid": "35023776", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA336518", "pmid": "35616377", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}]}, "lachner n": {"display": "Lachner N", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA313232", "pmid": "27388460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteroidales group S24-7 population genome recovery"}, {"acc": "PRJNA544874", "pmid": "31928131", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome analysis of mice in association with graft-vs-host disease"}, {"acc": "PRJNA562766", "pmid": "33208745", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}]}, "lacoste v": {"display": "Lacoste V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA371487", "pmid": "28715422", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Leishmania RNA Virus Genomics'' study from French Guiana"}]}, "lacourse ej": {"display": "LaCourse EJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1211045", "pmid": "40833797", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Freshwater snail faeces raw sequence reads"}]}, "lacruz-pleguezuelos b": {"display": "Lacruz-Pleguezuelos B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "laczny cc": {"display": "Laczny CC", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "28721231", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "29075368", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA289586", "pmid": "27723761", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA782492", "pmid": "40707492", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MiBiPa - Non-invasive microbiome-derived multi-omic biomarkers for the early-stage detect…"}]}, "lador d": {"display": "Lador D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "lafleur d": {"display": "Lafleur D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "laforest-lapointe i": {"display": "Laforest-Lapointe I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1258733", "pmid": "42127418", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Metagenome"}]}, "laforgia ml": {"display": "Laforgia ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA925931", "pmid": null, "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Invasive plant species interact with drought to shift key functions and families in the n…"}]}, "laframboise t": {"display": "LaFramboise T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746290", "pmid": "35210415", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Circulating Microbiome in Myeloid Malignancy"}]}, "lagaisse r": {"display": "Lagaisse R", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "lager s": {"display": "Lager S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62678", "pmid": "31641004", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "BASIC: Biology, Affect, Stress, Imaging and Cognition in pregnancy"}]}, "lagstrom h": {"display": "Lagström H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "laguna t": {"display": "Laguna T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "lagunas-martinez a": {"display": "Lagunas-Martínez A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA721692", "pmid": "36786619", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "METAGENOMIC ANALYSIS OF MEXICAN CHILDHOOD GUT MICROBIOTA"}]}, "lahdesmaki h": {"display": "Lähdesmäki H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "lahesmaa r": {"display": "Lahesmaa R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "lahey l": {"display": "Lahey L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1420872", "pmid": "41027803", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of gut/stool samples Metagenome"}]}, "lahiri r": {"display": "Lahiri R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "lahti l": {"display": "Lahti L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "39092808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "lahtinen e": {"display": "Lahtinen E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52774", "pmid": "37731926", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}]}, "lahyani m": {"display": "Lahyani M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA515489", "pmid": "32840024", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genomic collection of symbionts associated with Petrosia ficiformis"}]}, "lai js": {"display": "Lai JS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}]}, "lai p": {"display": "Lai P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390667", "pmid": "42071227", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal sample"}]}, "lai ps": {"display": "Lai PS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "lai s": {"display": "Lai S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "36376928", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "lai y": {"display": "Lai Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1127293", "pmid": "39065200", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "fecal microbial composition in Parkinson's disease"}]}, "laidlaw e": {"display": "Laidlaw E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1369410", "pmid": "42242497", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics sequencing from patients with CD4 lymphopenia"}]}, "laine p": {"display": "Laine P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59350", "pmid": "39143178", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "deep shotgun DNA sequencing of 136 patient’s fecal samples (Parkinson vs Control)"}, {"acc": "PRJEB59350", "pmid": "40258842", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "deep shotgun DNA sequencing of 136 patient’s fecal samples (Parkinson vs Control)"}]}, "laing kj": {"display": "Laing KJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "30383234", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "laing ng": {"display": "Laing NG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "laiola m": {"display": "Laiola M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81434", "pmid": "40461059", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "laiolo p": {"display": "Laiolo P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698773", "pmid": "34715437", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}]}, "lake c": {"display": "Lake C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "lakshman s": {"display": "Lakshman S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1406675", "pmid": "41901112", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "GEO accession GSE317287 is currently private and is scheduled to be released on Jul 01, 2…"}]}, "lakshmanappa ys": {"display": "Lakshmanappa YS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA484151", "pmid": "31379808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural and Urban infant''s fecal microbiota study"}]}, "lakshmikanth t": {"display": "Lakshmikanth T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "laky k": {"display": "Laky K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "lalani t": {"display": "Lalani T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945408", "pmid": "38085102", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prev…"}]}, "lalli mk": {"display": "Lalli MK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821542", "pmid": "39551356", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut metagenomes from mothers and their infants in the EDIA study"}]}, "lalueza-fox c": {"display": "Lalueza-Fox C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32319", "pmid": "32004756", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Reads sequenced from a parchment blood stain attributed to the french revolutionary Jean…"}, {"acc": "PRJEB43276", "pmid": "34527890", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Salmonella enterica from a soldier from the 1652-siege of Barcelona (Spain) supports hist…"}]}, "lam k": {"display": "Lam K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA353598", "pmid": "28539351", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}]}, "lam kn": {"display": "Lam KN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202388", "pmid": "24911009", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "lam rp": {"display": "Lam RP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573821", "pmid": "32919472", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Whole Meta-genome shotgun sequencing of stool samples from human treated with antibiotics"}]}, "lam s": {"display": "Lam S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504921", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA506811", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "HUMAN GUT RECTAL BACTERIA Metagenome"}]}, "lam tj": {"display": "Lam TJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "lamaka ng": {"display": "Lamaka NG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1355224", "pmid": "42037384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human metagenomic samples Metagenome"}]}, "lamaziere a": {"display": "Lamazière A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "lamb ca": {"display": "Lamb CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49383", "pmid": "36163498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm Neonatal Stool Metagenomes"}]}, "lambert c": {"display": "Lambert C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1011899", "pmid": "40155393", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Collaborative spiking study 2B for high throughput sequencing for virus detection"}]}, "lambert-porcheron s": {"display": "Lambert-Porcheron S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48663", "pmid": "35311446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Increasing the diversity of dietary fibres in a daily-consumed bread modifies gut microbi…"}]}, "lamberte le": {"display": "Lamberte LE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1191223", "pmid": "40813371", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of early life antibiotic and probiotic treatment on gut microbiome and resistome o…"}]}, "lambisia aw": {"display": "Lambisia AW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156362", "pmid": "39319086", "pos": "first", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Genomic epidemiology of human adenoviruses"}]}, "lamendella r": {"display": "Lamendella R", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA301903", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA396794", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA532310", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut metagenome"}]}, "lamere b": {"display": "LaMere B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "lamichhane s": {"display": "Lamichhane S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA231909", "pmid": "36195095", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA231909", "pmid": "41339624", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA475246", "pmid": "35685890", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "lammens c": {"display": "Lammens C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685914", "pmid": "33854066", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiota-based markers predictive of development of Clostridioides difficile infection"}]}, "lamouse-smith e": {"display": "Lamousé-Smith E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1463324", "pmid": "41342324", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "VE202 phase 1 stool metagenomes"}]}, "lampel ka": {"display": "Lampel KA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA336518", "pmid": "29954907", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA336518", "pmid": "29954914", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}]}, "lamson dm": {"display": "Lamson DM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27932649", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "lamurias a": {"display": "Lamurias A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB50688", "pmid": "35972375", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sequencing read data for Danish soil samples"}]}, "lan c": {"display": "Lan C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}]}, "lan g": {"display": "Lan G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA924947", "pmid": "38651859", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}]}, "lan h": {"display": "Lan H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858926", "pmid": "36687649", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}]}, "lan x": {"display": "Lan X", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB23052", "pmid": "41511111", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJNA1025870", "pmid": "38778483", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota transplantation significantly improved respiratory failure of amyotrophi…"}]}, "lancioni cl": {"display": "Lancioni CL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "lander es": {"display": "Lander ES", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657818", "pmid": "33377127", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}]}, "lander o": {"display": "Lander O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}]}, "landero j": {"display": "Landero J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39640590", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "landon e": {"display": "Landon E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14474", "pmid": "28539477", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}]}, "lane jm": {"display": "Lane JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39474439", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}, {"acc": "PRJNA975184", "pmid": "39640590", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "lang j": {"display": "Lang J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA719915", "pmid": "34465850", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tumor microbiome contributes to an aggressive phenotype in the basal-like subtype of panc…"}]}, "lang ue": {"display": "Lang UE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB86263", "pmid": "39218875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gender-affirming hormonal therapy induces a gender-concordant fecal metagenome transition…"}]}, "langdon a": {"display": "Langdon A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA739008", "pmid": "37866373", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Effect of amoxicillin prophylaxis on gut microbiome and resistome for severe acute malnut…"}]}, "lange c": {"display": "Lange C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "langeland n": {"display": "Langeland N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1305341", "pmid": "42013844", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "ProRIDE Deep Seq Metagenomics Raw sequence reads"}]}, "langelier cr": {"display": "Langelier CR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "langendorf c": {"display": "Langendorf C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA739008", "pmid": "37866373", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Effect of amoxicillin prophylaxis on gut microbiome and resistome for severe acute malnut…"}]}, "langford kw": {"display": "Langford KW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21624", "pmid": "29491419", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of the rumen of Scottish cattle."}]}, "langheinrich m": {"display": "Langheinrich M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "langille mgi": {"display": "Langille MGI", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB29237", "pmid": "30838178", "pos": "last", "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}, {"acc": "PRJEB29237", "pmid": "35967843", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}, {"acc": "PRJEB29237", "pmid": "36909730", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}, {"acc": "PRJEB41463", "pmid": "35967843", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB41463", "pmid": "36909730", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB59728", "pmid": "36909730", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "This study examined pediatric patients undergoing treatment for various cancers and exami…"}]}, "lankapalli ak": {"display": "Lankapalli AK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37508", "pmid": "32528126", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "A treponemal genome from an historic plague victim supports recent emergence of yaws and…"}]}, "lanphear bp": {"display": "Lanphear BP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1139690", "pmid": "40340756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "HOME Study fecal samples"}]}, "lanza vf": {"display": "Lanza VF", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}, {"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}, {"acc": "PRJNA706606", "pmid": "36416733", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of Water Chlorination of Children's Gut Microbiomes in Bangladesh"}, {"acc": "PRJNA726052", "pmid": "35422497", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effects of drinking water chlorination on childrens intestinal flora and resistomes in Dh…"}]}, "lappa d": {"display": "Lappa D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "lara e": {"display": "Lara E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB25144", "pmid": "25874666", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Temporal patterns of soil micro-eukaryotic diversity beneath decomposing pig cadavers as…"}]}, "lara m": {"display": "Lara M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55075", "pmid": "38524774", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Molecular and phylogenetic characterization of the monkeypox outbreak in Andalusia, Spain"}]}, "larabi a": {"display": "Larabi A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "larkin mj": {"display": "Larkin MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB30955", "pmid": "30625669", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic Characterization of Viral and Bacterial Communities in Groundwater Associated…"}]}, "laroquette a": {"display": "Laroquette A", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "laros jfj": {"display": "Laros JFJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44737", "pmid": "34126062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}]}, "larralde mf": {"display": "Larralde MF", "group": false, "n_studies": 10, "studies": [{"acc": "PRJDB4176", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1690", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB21528", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB22893", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome impacts response to PD-1 immunotherapy in melanoma patients"}, {"acc": "PRJEB27005", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB39223", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB44737", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJNA231909", "pmid": "39885121", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "39885121", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA48479", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "larsen f": {"display": "Larsen F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46943", "pmid": "41387423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}]}, "larsen la": {"display": "Larsen LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB66169", "pmid": "41540446", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient DNA study provides clues to leprosy susceptibility in medieval Europe"}]}, "larsen lh": {"display": "Larsen LH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB25727", "pmid": "31138673", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The impact of AXOS intake in overweight individuals with metabolic syndrome."}]}, "larsen m": {"display": "Larsen M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB7925", "pmid": "25887914", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Quality control of microbiota metagenomics by k-mer analysis with SOLiD sequencing techno…"}]}, "larsen p": {"display": "Larsen P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14474", "pmid": "28539477", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}]}, "larsen tm": {"display": "Larsen TM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36898", "pmid": "33629506", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics analysis on overweight subjects under a caloric restriction intervention with…"}]}, "larson d": {"display": "Larson D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "larson lm": {"display": "Larson LM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39367018", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "larson pj": {"display": "Larson PJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA558989", "pmid": "32004459", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomics of Staphylococcus epidermidis and contextual metagenome"}]}, "larsson dgj": {"display": "Larsson DGJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA384716", "pmid": "30250208", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}]}, "lasak i": {"display": "Lasak I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "last a": {"display": "Last A", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "latifi d": {"display": "Latifi D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "latorre a": {"display": "Latorre A", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB3085", "pmid": "23236009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}, {"acc": "PRJEB3206", "pmid": "23760301", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of the viral and microbial metagenomes associated with the Crohn's disease"}, {"acc": "PRJEB5185", "pmid": "25407519", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysfunctional gut microbiota drives chronic immune activation in HIV-treated individuals"}]}, "latreille j": {"display": "Latreille J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1040852", "pmid": "37350224", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CHAN skin Metagenome"}]}, "lau af": {"display": "Lau AF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445389", "pmid": "30586509", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Sphingomonas koreensis Genome sequencing and assembly"}]}, "lau cs": {"display": "Lau CS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA669352", "pmid": "38366247", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome assembly for sulfonamide subsistence and the transfer of genetic determinants"}]}, "lau h": {"display": "Lau H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685168", "pmid": "34297922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics suggest diverse mechanisms for response to biologic therapies in IBD"}]}, "lau k": {"display": "Lau K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1184197", "pmid": "39856104", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Dietary fiber content in clinical ketogenic diets modifies the gut microbiome and seizure…"}]}, "lau l": {"display": "Lau L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}]}, "lau r": {"display": "Lau R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}]}, "lau s": {"display": "Lau S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "lau skp": {"display": "Lau SKP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA421859", "pmid": "29886344", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sichuan takin Metagenome"}]}, "lauber cl": {"display": "Lauber CL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB20471", "pmid": "20231444", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Forensic identification using skin bacterial communities - keyboard"}, {"acc": "PRJEB20500", "pmid": "20231444", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Forensic identification using skin bacterial communities - mouse"}]}, "laue he": {"display": "Laue HE", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1139690", "pmid": "40340756", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "HOME Study fecal samples"}, {"acc": "PRJNA296814", "pmid": "32968156", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "36777525", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "38760865", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA695570", "pmid": "38760865", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "lauener r": {"display": "Lauener R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15633", "pmid": "35406036", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}]}, "laufer va": {"display": "Laufer VA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542320", "pmid": "31700190", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacteria Genome sequencing and assembly"}]}, "laurens lml": {"display": "Laurens LML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819194", "pmid": "35606844", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "KRuMBS: Kyphosid Ruminant Microbial Biodigestor of Seaweeds"}]}, "laurent pa": {"display": "Laurent PA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "laurie j": {"display": "Laurie J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1185841", "pmid": "40232948", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Buccal swab and saliva rinse samples from pregnant women with and without T2DM - Raw sequ…"}]}, "laursen mf": {"display": "Laursen MF", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB29078", "pmid": "37874156", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJEB84944", "pmid": "40885737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of 56 mother-infant dyads from the ALADDIN birth cohort"}, {"acc": "PRJNA1159139", "pmid": "39377603", "pos": null, "reason_code": "host_synthetic", "src": "L", "status": "excluded", "title_short": "I-TIM-2 validation (VAL)"}, {"acc": "PRJNA296814", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA322188", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}]}, "lausten-thomsen u": {"display": "Lausten-Thomsen U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA876384", "pmid": "36620054", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Microbial DNA extraction of high-host content and low biomass samples: optimized protocol…"}]}, "laut c": {"display": "Laut C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "lavarello c": {"display": "Lavarello C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1168703", "pmid": "38485093", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of an epilepsy-linked gut microbiota signature in a pediatric rat model of…"}]}, "lavergne a": {"display": "Lavergne A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA371487", "pmid": "28715422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Leishmania RNA Virus Genomics'' study from French Guiana"}]}, "lavezzari d": {"display": "Lavezzari D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB121228", "pmid": "38793608", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}, {"acc": "PRJEB121228", "pmid": "41683794", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}]}, "lavigne j": {"display": "Lavigne J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202388", "pmid": "25028422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "laville m": {"display": "Laville M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB48663", "pmid": "35311446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Increasing the diversity of dietary fibres in a daily-consumed bread modifies gut microbi…"}, {"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "lavrinienko a": {"display": "Lavrinienko A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA613381", "pmid": "32968071", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut…"}]}, "lavy i": {"display": "Lavy I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1445880", "pmid": "42010622", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome samples Gastrointestinal Microbiome and Allergic Proctocolitis coho…"}]}, "lawley td": {"display": "Lawley TD", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}, {"acc": "PRJEB32631", "pmid": "31534227", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "36456554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "39242817", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "42032281", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB47909", "pmid": "42032281", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "FMT datasets of patients with recurrent Clostridioides difficile infection (rCDI), inflam…"}, {"acc": "PRJEB6456", "pmid": "39242817", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA400115", "pmid": "39242817", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}, {"acc": "PRJNA806984", "pmid": "39242817", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}, {"acc": "PRJNA994433", "pmid": "39242817", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Variability of Bifidobacterium Species in the Infant Gut is Independent of M…"}]}, "lawrence c": {"display": "Lawrence C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1121295", "pmid": "38964511", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FEDEX Study Fecal Metagenomes"}]}, "lawson p": {"display": "Lawson P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}]}, "lawton em": {"display": "Lawton EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "37230981", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJEB48251", "pmid": "39365058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "lax s": {"display": "Lax S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14474", "pmid": "28539477", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}]}, "lay c": {"display": "Lay C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}, {"acc": "PRJNA726032", "pmid": "34172012", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "lay m": {"display": "Lay M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA647720", "pmid": "33727392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiome sequencing during a high fiber diet intervention"}]}, "lazar aj": {"display": "Lazar AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "lazarevic v": {"display": "Lazarevic V", "group": false, "n_studies": 23, "studies": [{"acc": "PRJEB20595", "pmid": "30065706", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hepatic brucelloma studied by next generation sequencing"}, {"acc": "PRJEB20877", "pmid": "28930150", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Detection of bacterial pathogens from broncho-alveolar lavage by next-generation sequenci…"}, {"acc": "PRJEB21816", "pmid": "30991963", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Listeria monocytogenes abdominal periaortitis"}, {"acc": "PRJEB24753", "pmid": "31448292", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Neisseria meningitidis"}, {"acc": "PRJEB24843", "pmid": "30714464", "pos": null, "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "The intestinal microbiota predisposes to traveller’s diarrhoea and to the carriage of mul…"}, {"acc": "PRJEB25228", "pmid": "31616669", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Cardiobacterium hominis"}, {"acc": "PRJEB26080", "pmid": "30356779", "pos": "last", "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Microbiota of infected dental roots indentified by 16S rRNA gene amplicon sequencing"}, {"acc": "PRJEB33794", "pmid": "32185143", "pos": "last", "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Changes in Microbiota Profiles After Prolonged Frozen Storage of Stool Suspensions"}, {"acc": "PRJEB35816", "pmid": "32585945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota of carriers of extended-spectrum beta-lactamase or carbapenemase-producing…"}, {"acc": "PRJEB36797", "pmid": "32711187", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The GLP-1R agonist liraglutide limits hepatic lipotoxicity and inflammatory response in m…"}, {"acc": "PRJEB39870", "pmid": "33646178", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Oral microbial community profiles in Parkinson’s disease"}, {"acc": "PRJEB40995", "pmid": "34492446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of antibiotic duration on the intestinal microbiota and resistome"}, {"acc": "PRJEB43505", "pmid": "34535959", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut barrier and microbiota changes with glycine and branched chain amino acids supplement…"}, {"acc": "PRJEB43581", "pmid": "34295911", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}, {"acc": "PRJEB43581", "pmid": "34737977", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}, {"acc": "PRJEB44108", "pmid": "37065965", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A bone of contention"}, {"acc": "PRJEB44214", "pmid": "34983654", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in the gut microbiome in colon cancer surgery patients: a pilot observational stu…"}, {"acc": "PRJEB44898", "pmid": "34295911", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hyperammonemia syndrome following lung transplantation."}, {"acc": "PRJEB47877", "pmid": "37938717", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Challenges in bacterial DNA enrichment and quantification in tissues"}, {"acc": "PRJEB50897", "pmid": "40244028", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental pulp"}, {"acc": "PRJEB57944", "pmid": "40182766", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Diagnosing endocarditis by metagenomics"}, {"acc": "PRJEB60931", "pmid": "37735787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Mycoplasma genitalium endocarditis"}, {"acc": "PRJEB65720", "pmid": "37722530", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acute bacterial meningitis due to Neisseria meningitidis serotype B missed by a multiplex…"}, {"acc": "PRJEB81450", "pmid": "40562730", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Streptococcus gordonii endocarditis"}]}, "lazrak a": {"display": "Lazrak A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "le bitouze c": {"display": "Le Bitouzé C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB32319", "pmid": "32004756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Reads sequenced from a parchment blood stain attributed to the french revolutionary Jean…"}]}, "le chatelier e": {"display": "Le Chatelier E", "group": false, "n_studies": 14, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}, {"acc": "PRJEB23292", "pmid": "29899081", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysbiosis, including decreased gut microbial richness (MGR) and composition modifications…"}, {"acc": "PRJEB36461", "pmid": "32360114", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Laparoscopic Roux-en-Y gastric bypass and sleeve gastrectomy on gut microbiota:…"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB43454", "pmid": "35151268", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Long-term diosmectite use does not alter the gut microbiota in adults with chronic diarrh…"}, {"acc": "PRJEB43611", "pmid": "35140493", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in gut microbiota during balneotherapy"}, {"acc": "PRJEB4413", "pmid": "23985875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary intervention impact on gut microbial gene richness based on SOLiD next generation…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB48663", "pmid": "35311446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Increasing the diversity of dietary fibres in a daily-consumed bread modifies gut microbi…"}, {"acc": "PRJEB52431", "pmid": "36971547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In Vitro Modelling of Oral Microbial Invasion in the Human Colon"}, {"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}, {"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "le m": {"display": "Le M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "le malicot k": {"display": "le Malicot K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB110927", "pmid": "39454892", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Durigast_F_prausnitzii_ICI_gastric_adenocarcinoma"}]}, "le moyec l": {"display": "Le Moyec L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA438436", "pmid": "31270376", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The gut microbiota influence the basal physiological parameters in equine athletes"}, {"acc": "PRJNA438436", "pmid": "33898524", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The gut microbiota influence the basal physiological parameters in equine athletes"}]}, "le neve b": {"display": "Le Nevé B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB34992", "pmid": "33771219", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet and gut microbiome interactions of relevance for symptoms in irritable bowel syndrome"}]}, "le ng": {"display": "Le NG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473421", "pmid": "31086216", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Folsomia candida gut metagenome sequence reads"}]}, "le paslier d": {"display": "Le Paslier D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}]}, "le tm": {"display": "LE TM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11419", "pmid": "38188664", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}]}, "le viet t": {"display": "Le Viet T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA722408", "pmid": "36076058", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}]}, "le-chatelier e": {"display": "Le-Chatelier E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}]}, "leach j": {"display": "Leach J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49206", "pmid": "28839072", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}, {"acc": "PRJEB49206", "pmid": "30118385", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}, {"acc": "PRJEB49206", "pmid": "30439937", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}]}, "leahy sc": {"display": "Leahy SC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "leal l": {"display": "Leal L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1107349", "pmid": "38980166", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Polysaccharide degradation by microbial communities"}]}, "leal m": {"display": "Leal M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB5185", "pmid": "25407519", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysfunctional gut microbiota drives chronic immune activation in HIV-treated individuals"}]}, "leal rodriguez c": {"display": "Leal Rodríguez C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40396485", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}]}, "lean ss": {"display": "Lean SS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819247", "pmid": "36060782", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome Raw sequence reads"}]}, "leardini d": {"display": "Leardini D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA914532", "pmid": "36639555", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "Levofloxacin prophylaxis and parenteral nutrition have a detrimental effect on intestinal…"}]}, "leary p": {"display": "Leary P", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1275869", "pmid": "41620544", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Sequencing of stool samples from Ethiopian children from Adama (Ethiopia)"}, {"acc": "PRJNA1345963", "pmid": "41620544", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Sequencing of stool samples from Ethiopian children from Adama (Ethiopia)"}, {"acc": "PRJNA504891", "pmid": "41620544", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA716780", "pmid": "41620544", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "lebas e": {"display": "Lebas E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "lebeaux rm": {"display": "Lebeaux RM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "34215179", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35568730", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35906254", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "lebl j": {"display": "Lebl J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445932", "pmid": "30121305", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}]}, "lebrilla cb": {"display": "Lebrilla CB", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB15633", "pmid": "28079170", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA390646", "pmid": "29242832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}]}, "lebrun la": {"display": "Lebrun LA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "26505828", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "28721231", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "29075368", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA289586", "pmid": "27723761", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}]}, "leburu t": {"display": "Leburu T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "lecardonnel j": {"display": "Lecardonnel J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA438436", "pmid": "33898524", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The gut microbiota influence the basal physiological parameters in equine athletes"}]}, "lecaudey la": {"display": "Lecaudey LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64334", "pmid": "38294254", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Multi-omics of host-gut microbiota interactions in healthy and parasitized farmed Atlanti…"}]}, "lechatelier e": {"display": "LeChatelier E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "lechiile k": {"display": "Lechiile K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA980291", "pmid": "38298144", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Targeted Capture of AMR in children in Botswana"}]}, "lecomte a": {"display": "Lecomte A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59350", "pmid": "39143178", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "deep shotgun DNA sequencing of 136 patient’s fecal samples (Parkinson vs Control)"}, {"acc": "PRJEB59350", "pmid": "40258842", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "deep shotgun DNA sequencing of 136 patient’s fecal samples (Parkinson vs Control)"}]}, "lecomte b": {"display": "Lecomte B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "leduc n": {"display": "Leduc N", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB43581", "pmid": "34295911", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}, {"acc": "PRJEB44898", "pmid": "34295911", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hyperammonemia syndrome following lung transplantation."}]}, "lee a": {"display": "Lee A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "lee bw": {"display": "Lee BW", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA272371", "pmid": "29049378", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA642723", "pmid": "33023370", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "lee c": {"display": "Lee C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "lee cc": {"display": "Lee CC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA936783", "pmid": "35486954", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Draft genome sequences of Group B Streptococcus isolates from infected infants or children"}]}, "lee ck": {"display": "Lee CK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA431961", "pmid": "39696719", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Geothermal fumarole subsurface microbial communities from Mt. Erebus, Antarctica"}]}, "lee cs": {"display": "Lee CS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1056831", "pmid": "39006502", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota of infant cholestasis in Taiwan"}]}, "lee d": {"display": "Lee D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB11419", "pmid": "38188664", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}]}, "lee dw": {"display": "Lee DW", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45443", "pmid": "35485368", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJEB45443", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJNA979436", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}]}, "lee em": {"display": "Lee EM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": "42014682", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}]}, "lee hj": {"display": "Lee HJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB33013", "pmid": "36504822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB55713", "pmid": "36504822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Child gut microbiome"}]}, "lee i": {"display": "Lee I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA798244", "pmid": "36289209", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "HiFi Metagenomic Sequencing Enables Assembly of Accurate Circularized Genomes of Long and…"}]}, "lee j": {"display": "Lee J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1420872", "pmid": "41027803", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of gut/stool samples Metagenome"}, {"acc": "PRJNA894152", "pmid": "37715296", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Long read infant/young children fecal and environmental samples"}]}, "lee jc": {"display": "Lee JC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1151597", "pmid": "40405038", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Probiotics mixture suppresses MASLD-associated hepatocellular carcinoma"}, {"acc": "PRJNA1367284", "pmid": "38575146", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Probiotics mixture suppresses diet-induced MASLD: Fecal metagenomics of mice sample"}]}, "lee je": {"display": "Lee JE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "lee jj": {"display": "Lee JJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA872399", "pmid": "36474348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "lee jwj": {"display": "Lee JWJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA685168", "pmid": "34297922", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics suggest diverse mechanisms for response to biologic therapies in IBD"}]}, "lee k": {"display": "Lee K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629517", "pmid": "34145447", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "DFO - beads in situ microcosms Raw sequence reads"}]}, "lee m": {"display": "Lee M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "lee mj": {"display": "Lee MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45443", "pmid": "35485368", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}]}, "lee oe": {"display": "Lee OE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11419", "pmid": "38188664", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}]}, "lee pkh": {"display": "Lee PKH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA478488", "pmid": "32591010", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Chinese human skin metagenome"}]}, "lee s": {"display": "Lee S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1307628", "pmid": "41461922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbial oral-gut translocation in advanced chronic liver disease is linked to exacerbat…"}, {"acc": "PRJNA894152", "pmid": "37715296", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Long read infant/young children fecal and environmental samples"}]}, "lee se": {"display": "Lee SE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081394", "pmid": "38564694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sinus, throat, and sputum airway microbiology in cystic fibrosis"}]}, "lee sm": {"display": "Lee SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA477424", "pmid": "30619206", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "panda gut metagenome raw sequence reads Raw sequence reads"}]}, "lee st": {"display": "Lee ST", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701961", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "lee stm": {"display": "Lee STM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701961", "pmid": "37069665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "lee sy": {"display": "Lee SY", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45443", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJNA979436", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}]}, "lee wh": {"display": "Lee WH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA16209", "pmid": "16336043", "pos": null, "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of RNA viruses in human feces"}]}, "lee ya": {"display": "Lee YA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "lee yk": {"display": "Lee YK", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45443", "pmid": "35485368", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJEB45443", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJNA979436", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}]}, "lee ys": {"display": "Lee YS", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB127029", "pmid": "26552345", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abun…"}, {"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}]}, "lee yw": {"display": "Lee YW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "lee-lin s": {"display": "Lee-Lin S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1369410", "pmid": "42242497", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics sequencing from patients with CD4 lymphopenia"}, {"acc": "PRJNA445389", "pmid": "30586509", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Sphingomonas koreensis Genome sequencing and assembly"}]}, "lee-lin sq": {"display": "Lee-Lin SQ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA471898", "pmid": "30397357", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The skin microbiome of DOCK8-deficient patients"}]}, "lee-sarwar k": {"display": "Lee-Sarwar K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "leech j": {"display": "Leech J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}]}, "leech sm": {"display": "Leech SM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1076911", "pmid": "38995243", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant and maternal gut microbiomes"}, {"acc": "PRJNA1185841", "pmid": "40232948", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Buccal swab and saliva rinse samples from pregnant women with and without T2DM - Raw sequ…"}]}, "leekha s": {"display": "Leekha S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1067813", "pmid": "39731916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C. difficile-associated mouse and human fecal metagenomes"}]}, "leelastwattanagul o": {"display": "Leelastwattanagul O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA63661", "pmid": "32436839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "leenders wpj": {"display": "Leenders WPJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA856437", "pmid": "36171433", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cervicovaginal microbial communities and hrHPV infections"}, {"acc": "PRJNA856437", "pmid": "37731597", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cervicovaginal microbial communities and hrHPV infections"}, {"acc": "PRJNA856437", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cervicovaginal microbial communities and hrHPV infections"}, {"acc": "PRJNA888791", "pmid": "36171433", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Longitudinal profiling of the cervicovaginal microbiome"}, {"acc": "PRJNA888791", "pmid": "37731597", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Longitudinal profiling of the cervicovaginal microbiome"}, {"acc": "PRJNA888791", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Longitudinal profiling of the cervicovaginal microbiome"}]}, "lefebvre g": {"display": "Lefebvre G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42539", "pmid": "34756056", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "FUT2/FUT3 genes sequences and nasopharyngeal shotgun metagenomics from the Microbiota and…"}]}, "legendre g": {"display": "Legendre G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1040852", "pmid": "37350224", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CHAN skin Metagenome"}]}, "leggett rm": {"display": "Leggett RM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22207", "pmid": "31844297", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}]}, "leghi ge": {"display": "Leghi GE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819247", "pmid": "36060782", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome Raw sequence reads"}]}, "legione ar": {"display": "Legione AR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA596855", "pmid": "31383310", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Disease surveillance in wild Victorian cacatuids"}]}, "legrand a": {"display": "Legrand A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "lehman da": {"display": "Lehman DA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1045584", "pmid": "39185682", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of SARS-CoV-2 in stool sample from women living with HIV and HIV-negative women an…"}, {"acc": "PRJNA635738", "pmid": "33727396", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Breast milk Microbiome/Virome of HIV+ Kenyan Women is Not Altered by Immunosuppression"}]}, "lehman j": {"display": "Lehman J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "lehmann le": {"display": "Lehmann LE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA787952", "pmid": "35239511", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}]}, "lehnen a": {"display": "Lehnen A", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1108908", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1108960", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1109334", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}]}, "leibel sa": {"display": "Leibel SA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52147", "pmid": "35440708", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Association Between Milk Feedings in the Preterm Population, the Microbiome and Risk…"}, {"acc": "PRJNA1086674", "pmid": "39138352", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Impact of Oral Feedings on the Preterm Infant Microbiome and Metabolome"}]}, "leibel sl": {"display": "Leibel SL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52147", "pmid": "35440708", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The Association Between Milk Feedings in the Preterm Population, the Microbiome and Risk…"}, {"acc": "PRJNA1086674", "pmid": "39138352", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The Impact of Oral Feedings on the Preterm Infant Microbiome and Metabolome"}]}, "leiby js": {"display": "Leiby JS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA451186", "pmid": "30376898", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Placenta Microbiome"}]}, "leimbach a": {"display": "Leimbach A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1011899", "pmid": "40155393", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Collaborative spiking study 2B for high throughput sequencing for virus detection"}]}, "leiner im": {"display": "Leiner IM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}]}, "leinwand j": {"display": "Leinwand J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}]}, "leisenring wm": {"display": "Leisenring WM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28838146", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "leite r": {"display": "Leite R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA451186", "pmid": "30376898", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Placenta Microbiome"}]}, "lejard v": {"display": "Léjard V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}]}, "lejeune jt": {"display": "LeJeune JT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA484151", "pmid": "31379808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural and Urban infant''s fecal microbiota study"}]}, "leligdowicz a": {"display": "Leligdowicz A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "lelwala-guruge j": {"display": "Lelwala-Guruge J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}]}, "lemay dg": {"display": "Lemay DG", "group": false, "n_studies": 16, "studies": [{"acc": "PRJEB6456", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA273761", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA384716", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA473126", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA63661", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "lemery-chalfant k": {"display": "Lemery-Chalfant K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA695570", "pmid": "34442687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "lemey p": {"display": "Lemey P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "lemme-dumit jm": {"display": "Lemme-Dumit JM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA774819", "pmid": "35695455", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Highly specialized carbohydrate metabolism capability in Bifidobacterium strain associate…"}, {"acc": "PRJNA776332", "pmid": "35280991", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Altered gut microbiome and fecal immune phenotype in early preterm infants with leaky gut"}]}, "lemoine f": {"display": "Lemoine F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "lemons jms": {"display": "Lemons JMS", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1160256", "pmid": "39919360", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": "40941064", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1456031", "pmid": "42353547", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of selected contaminants on the human gut microbiome tested ex vivo"}, {"acc": "PRJNA893635", "pmid": "36361763", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}, {"acc": "PRJNA893635", "pmid": "37297350", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}, {"acc": "PRJNA961974", "pmid": "38236043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The effects of selected plant extracts on the human gut microbiome"}]}, "lemos ln": {"display": "Lemos LN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA717815", "pmid": "35758687", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human salivary metagenome in health and disease"}]}, "lenardo mj": {"display": "Lenardo MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "leng h": {"display": "Leng H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858926", "pmid": "37771701", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}]}, "leng zj": {"display": "Leng ZJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA784757", "pmid": "35902819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "The Diagnosis Performance of Mycobacterium Tuberculosis Complex by Metagenomic Next-gener…"}]}, "lengyel m": {"display": "Lengyel M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "38838470", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "lennard k": {"display": "Lennard K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37312", "pmid": "33072693", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "The utility of shotgun metagenomics to investigate the carriage of, and longitudinal chan…"}]}, "lenters v": {"display": "Lenters V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29078", "pmid": "30813950", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}]}, "lenzini p": {"display": "Lenzini P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA259274", "pmid": "25568281", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Wake Forest Vervet Microbiome Project"}]}, "leo s": {"display": "Leo S", "group": false, "n_studies": 10, "studies": [{"acc": "PRJEB20595", "pmid": "30065706", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hepatic brucelloma studied by next generation sequencing"}, {"acc": "PRJEB20877", "pmid": "28930150", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Detection of bacterial pathogens from broncho-alveolar lavage by next-generation sequenci…"}, {"acc": "PRJEB21816", "pmid": "30991963", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Listeria monocytogenes abdominal periaortitis"}, {"acc": "PRJEB24753", "pmid": "31448292", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Neisseria meningitidis"}, {"acc": "PRJEB24843", "pmid": "30714464", "pos": "first", "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "The intestinal microbiota predisposes to traveller’s diarrhoea and to the carriage of mul…"}, {"acc": "PRJEB26080", "pmid": "30356779", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Microbiota of infected dental roots indentified by 16S rRNA gene amplicon sequencing"}, {"acc": "PRJEB33794", "pmid": "32185143", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Changes in Microbiota Profiles After Prolonged Frozen Storage of Stool Suspensions"}, {"acc": "PRJEB35816", "pmid": "32585945", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota of carriers of extended-spectrum beta-lactamase or carbapenemase-producing…"}, {"acc": "PRJEB40995", "pmid": "34492446", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of antibiotic duration on the intestinal microbiota and resistome"}, {"acc": "PRJEB55714", "pmid": "37397142", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analyses of the intestinal microbiome from neonates in the MIS BAIR trial"}, {"acc": "PRJEB55714", "pmid": "41853385", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analyses of the intestinal microbiome from neonates in the MIS BAIR trial"}]}, "leonard a": {"display": "Leonard A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB76898", "pmid": "38777633", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "EHI Data Release 1"}, {"acc": "PRJEB77033", "pmid": "38777633", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "EHI data release 2"}]}, "leonard mm": {"display": "Leonard MM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "leonard p": {"display": "Léonard P", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB6314", "pmid": "25496341", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Construction of a dairy microbial genome catalog opens new perspectives for the metagenom…"}]}, "leong ksw": {"display": "Leong KSW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA637785", "pmid": "33346848", "pos": "first", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA637785", "pmid": "33985595", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}]}, "leong le": {"display": "Leong LE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA503909", "pmid": "33074097", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}]}, "leong lex": {"display": "Leong LEX", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "leong p": {"display": "Leong P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA383868", "pmid": "28910633", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "30482830", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "32409670", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}]}, "leopold sr": {"display": "Leopold SR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA390646", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA633576", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}]}, "leoty-okombi s": {"display": "Leoty-Okombi S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1013332", "pmid": "38206014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Scalp microbiome study"}]}, "lepe ja": {"display": "Lepe JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55075", "pmid": "38524774", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Molecular and phylogenetic characterization of the monkeypox outbreak in Andalusia, Spain"}]}, "lepercq p": {"display": "Lepercq P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA646650", "pmid": "33658330", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "In vivo competitions between Fibrobacter succinogenes, Ruminococcus flavefaciens and Rumi…"}]}, "lephart p": {"display": "Lephart P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA660443", "pmid": "34785751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the human gut during enteric infection"}]}, "leprince jg": {"display": "Leprince JG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB50897", "pmid": "40244028", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental pulp"}]}, "leprohon p": {"display": "Leprohon P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "lerche nw": {"display": "Lerche NW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "21779173", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "lernmark a": {"display": "Lernmark Å", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA268964", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA392180", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA485056", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA497734", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "lertprasertsuke n": {"display": "Lertprasertsuke N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "lertsittichai p": {"display": "Lertsittichai P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA966136", "pmid": "38548910", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Vaginal microbiome in women with breast cancer after receiving AI"}]}, "lertsivawinyu w": {"display": "Lertsivawinyu W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1018099", "pmid": "38938117", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Cell-Lysis Treatment Prior to Saliva Metagenomic DNA Extraction on the Oral Mic…"}]}, "lescure l": {"display": "Lescure L", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "leshtakov k": {"display": "Leshtakov K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "lesker tr": {"display": "Lesker TR", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}, {"acc": "PRJNA1115039", "pmid": "39673707", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary selective effects manifest in the human gut microbiota from species composition t…"}, {"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}, {"acc": "PRJNA947377", "pmid": "38366600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Establishment of a non-Westernized gut microbiota in men who have sex with men is associa…"}]}, "leskovskis k": {"display": "Leskovskis K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62817", "pmid": "38868903", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome encoded purine and amino acid pathways present prospective biomarkers for…"}]}, "lesnik p": {"display": "Lesnik P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "less j": {"display": "Less J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445389", "pmid": "30586509", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Sphingomonas koreensis Genome sequencing and assembly"}]}, "lessard lord j": {"display": "Lessard Lord J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "lester r": {"display": "Lester R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63570", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Klebsiella_transmission_and_immunity_on_Chatinkha_nursery__Neo_TRACK_"}]}, "letunic i": {"display": "Letunic I", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "letur a": {"display": "Letur A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}]}, "leung akl": {"display": "Leung AKL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "leung asy": {"display": "Leung ASY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}]}, "leung dh": {"display": "Leung DH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA510445", "pmid": "31959989", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA510445", "pmid": "34525965", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}]}, "leung h": {"display": "Leung H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}, {"acc": "PRJNA728908", "pmid": "35675435", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of baseline individuals in a 4.6-year non-alcoholic fatty liver disease pr…"}]}, "leung hkm": {"display": "Leung HKM", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1151597", "pmid": "40405038", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Probiotics mixture suppresses MASLD-associated hepatocellular carcinoma"}, {"acc": "PRJNA1229795", "pmid": "40691217", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Theabrownin, in combination with Zearalenone, suppressed colitis-associated colorectal ca…"}, {"acc": "PRJNA1366117", "pmid": "39489290", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The Role of Amino Acid-Derived Metabolites in Non-alcoholic fatty liver disease (NAFLD) D…"}, {"acc": "PRJNA1366117", "pmid": "40015656", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The Role of Amino Acid-Derived Metabolites in Non-alcoholic fatty liver disease (NAFLD) D…"}, {"acc": "PRJNA1367284", "pmid": "38575146", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Probiotics mixture suppresses diet-induced MASLD: Fecal metagenomics of mice sample"}]}, "leung kk": {"display": "Leung KK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1087008", "pmid": "39236827", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic and Metatranscriptomic data of Marine Microbes in Coastal Waters of the South…"}]}, "leung mhy": {"display": "Leung MHY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA478488", "pmid": "32591010", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Chinese human skin metagenome"}]}, "leung pm": {"display": "Leung PM", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1130617", "pmid": "41505541", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA1130617", "pmid": null, "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA630822", "pmid": "34732568", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA630822", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA832417", "pmid": null, "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "leung tf": {"display": "Leung TF", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}]}, "leung ty": {"display": "Leung TY", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}]}, "levashina ea": {"display": "Levashina EA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1297429", "pmid": "40946313", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "16S and RNA sequencing Anopheles gambiae"}]}, "levecke b": {"display": "Levecke B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "levenez f": {"display": "Levenez F", "group": false, "n_studies": 12, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}, {"acc": "PRJEB23292", "pmid": "29899081", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysbiosis, including decreased gut microbial richness (MGR) and composition modifications…"}, {"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB43611", "pmid": "35140493", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in gut microbiota during balneotherapy"}, {"acc": "PRJEB4413", "pmid": "23985875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary intervention impact on gut microbial gene richness based on SOLiD next generation…"}, {"acc": "PRJEB51635", "pmid": "36604748", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}, {"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}, {"acc": "PRJEB7925", "pmid": "25887914", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Quality control of microbiota metagenomics by k-mer analysis with SOLiD sequencing techno…"}]}, "levi ylas": {"display": "Levi YLAS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA846723", "pmid": "39527605", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of oral administration of Bifidobacterium animalis subsp. lactis HN019 on the tre…"}]}, "levin am": {"display": "Levin AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52295", "pmid": "38117587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Precocious infant gut microbiome reprograms enterocytes and promotes childhood obesity ri…"}]}, "levin e": {"display": "Levin E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "levine a": {"display": "Levine A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "levy a": {"display": "Levy A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "levy k": {"display": "Levy K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486009", "pmid": "33452027", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Genome diversity of pathogenic Escherichia coli in Ecuador"}]}, "levy r": {"display": "Levy R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA314903", "pmid": "24178246", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Pseudomonas Aeruginosa Early CF Adaptive Changes"}]}, "levy s": {"display": "Levy S", "group": false, "n_studies": 44, "studies": [{"acc": "PRJEB1220", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB22207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJEB32135", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9576", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA1280936", "pmid": "41405404", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome of Infants in the Neonatal Intensive Care Unit"}, {"acc": "PRJNA188481", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA221723", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}, {"acc": "PRJNA273761", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA305507", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA319574", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA322188", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA328899", "pmid": "38172624", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA398089", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA417283", "pmid": "29988506", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA417283", "pmid": "38058267", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA417283", "pmid": "41405404", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA436562", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA485056", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA489090", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA504891", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA510445", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA542703", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA557731", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA633576", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA715601", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA853174", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}, {"acc": "PRJNA988496", "pmid": "38773685", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}, {"acc": "PRJNA988496", "pmid": "40823537", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}, {"acc": "PRJNA988496", "pmid": "41405404", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}]}, "lew m": {"display": "Lew M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "lewinter c": {"display": "Lewinter C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "lewis c": {"display": "Lewis C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}]}, "lewis cm": {"display": "Lewis CM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}, {"acc": "PRJNA445215", "pmid": "29959351", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "lewis cr": {"display": "Lewis CR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA695570", "pmid": "34442687", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "lewis zt": {"display": "Lewis ZT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15633", "pmid": "28079170", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJEB15633", "pmid": "35406036", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}]}, "ley c": {"display": "Ley C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA644725", "pmid": "32958861", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA916952", "pmid": "36758519", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Stanford's Outcomes Research in Kids (STORK) Virome"}]}, "ley re": {"display": "Ley RE", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB27308", "pmid": "30974084", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome metagenome analysis of stool samples from individuals with low and high saliva…"}, {"acc": "PRJEB46788", "pmid": "41358671", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB86954", "pmid": "41358671", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Integrating Metagenomics for Helminth Detection"}, {"acc": "PRJNA17391", "pmid": "17183312", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut microbiome of lean mouse 1"}, {"acc": "PRJNA17397", "pmid": "17183312", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut microbiome of obese mouse 1"}, {"acc": "PRJNA32089", "pmid": "19043404", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}, {"acc": "PRJNA321218", "pmid": "24137540", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA48479", "pmid": "41358671", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA916952", "pmid": "36758519", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Stanford's Outcomes Research in Kids (STORK) Virome"}]}, "leyn sa": {"display": "Leyn SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}]}, "lhomme m": {"display": "Lhomme M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "li a": {"display": "Li A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA876804", "pmid": "36357381", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Human Metagenomic Metagenome"}]}, "li ayl": {"display": "Li AYL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}]}, "li b": {"display": "Li B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}, {"acc": "PRJNA483343", "pmid": "30305736", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "li by": {"display": "Li BY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB57970", "pmid": "37139490", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "CCU infection"}]}, "li c": {"display": "Li C", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB23524", "pmid": "38868710", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS data from FMT trial for the treatment of recurrent Clostridium difficile infection"}, {"acc": "PRJEB6456", "pmid": "38868710", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA285502", "pmid": "38868710", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota transplantation (FMT) for ulcerative colitis"}, {"acc": "PRJNA400072", "pmid": "41299229", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA597371", "pmid": "34193290", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal Selective Pressure and Coevolution Project Part 4 human placebo Metagenome"}, {"acc": "PRJNA615162", "pmid": "41299229", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA625520", "pmid": "38868710", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Linking strain engraftment in fecal microbiota transplantation with maintenance of remiss…"}, {"acc": "PRJNA821542", "pmid": "41299229", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut metagenomes from mothers and their infants in the EDIA study"}]}, "li cy": {"display": "Li CY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522699", "pmid": "31427729", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}]}, "li d": {"display": "Li D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1023249", "pmid": "38881311", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "cultivated microbial species from anaerobic digester sludge and goat feces"}, {"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "li f": {"display": "Li F", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}, {"acc": "PRJNA836336", "pmid": "36179550", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenome of MSM prior to and following HIV seroconversion"}]}, "li fy": {"display": "Li FY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA876377", "pmid": "37007478", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soil microbiome of grassland bulk soil Metagenome"}]}, "li g": {"display": "Li G", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB15111", "pmid": "26932197", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}, {"acc": "PRJEB6456", "pmid": "33753486", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}, {"acc": "PRJNA752888", "pmid": "39509330", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Longitudinal saliva bacteriome and early childhood caries"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "li h": {"display": "Li H", "group": false, "n_studies": 16, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}, {"acc": "PRJEB108038", "pmid": "41834868", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Jaundice and the Infant Gut Microbiome: An Integrated Shotgun Metagenomics and B…"}, {"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJNA1042647", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA296814", "pmid": "35847562", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA522027", "pmid": "35087906", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Taisui metagenomic sequencing"}, {"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}, {"acc": "PRJNA728908", "pmid": "35675435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of baseline individuals in a 4.6-year non-alcoholic fatty liver disease pr…"}, {"acc": "PRJNA775062", "pmid": "42326398", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Landscapes of bacterial, viral and metabolic signatures and their interaction in early-we…"}, {"acc": "PRJNA776087", "pmid": "36973820", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}, {"acc": "PRJNA801796", "pmid": "37482605", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Upper respiratory tract virus infection alters the host microbial feature"}, {"acc": "PRJNA847006", "pmid": "42326398", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA869587", "pmid": "36973710", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human viral metagenome Metagenome"}, {"acc": "PRJNA871195", "pmid": "36973710", "pos": "first", "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Intestinal phage analysis of neonates and children under 5 years old"}]}, "li hx": {"display": "Li HX", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "li j": {"display": "Li J", "group": false, "n_studies": 20, "studies": [{"acc": "PRJDB28434", "pmid": "37979711", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Macrogenomic data of mice (PRJCA016720)"}, {"acc": "PRJDB39536", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Large-scale single-cell long-read genomics enables high-resolution microbiome profiling (…"}, {"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB14607", "pmid": "25721383", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "By taking three metagenomic approaches to reveal the microplankton communities from compo…"}, {"acc": "PRJEB26795", "pmid": "30609941", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA1018083", "pmid": "38705065", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "comammox supports stable production of ammonia nitrate from urine"}, {"acc": "PRJNA1052964", "pmid": "40860434", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA1087008", "pmid": "39236827", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic and Metatranscriptomic data of Marine Microbes in Coastal Waters of the South…"}, {"acc": "PRJNA1092353", "pmid": "39353343", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Benzothiazole-degrading consortia Raw sequence reads and Metagenome"}, {"acc": "PRJNA1106097", "pmid": "41411653", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Leuconostoc citreum enhances the colonization ability of Lactiplantibacillus plantarum in…"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA474601", "pmid": "29988510", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Loss of intestinal microbes in cholecystectomy patients"}, {"acc": "PRJNA478488", "pmid": "32591010", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Chinese human skin metagenome"}, {"acc": "PRJNA675914", "pmid": "34302348", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "hydrothermally inactive sulfides metagenomes"}, {"acc": "PRJNA775062", "pmid": "35913177", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Landscapes of bacterial, viral and metabolic signatures and their interaction in early-we…"}, {"acc": "PRJNA841246", "pmid": "35765950", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Feline panleukopenia and healthy control feline faecal samples"}, {"acc": "PRJNA847006", "pmid": "37049457", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA847006", "pmid": "37280255", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA847017", "pmid": "37280255", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads of GF mice"}]}, "li jm": {"display": "Li JM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "li k": {"display": "Li K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445968", "pmid": "30282828", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}]}, "li l": {"display": "Li L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA255683", "pmid": "25078300", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "CAT fecal Metagenome"}, {"acc": "PRJNA778020", "pmid": "35089209", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Clinical metagenomic sequencing for rapid diagnosis of Neonatal meningitis caused by Urea…"}]}, "li m": {"display": "Li M", "group": false, "n_studies": 5, "studies": [{"acc": "PRJDB39536", "pmid": null, "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Large-scale single-cell long-read genomics enables high-resolution microbiome profiling (…"}, {"acc": "PRJNA1052964", "pmid": "39034349", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA1052964", "pmid": "40860434", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA1121316", "pmid": "37060545", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}, {"acc": "PRJNA524703", "pmid": "40600714", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA835720", "pmid": "40600714", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human feces Viral/Bacterial Metagenome"}]}, "li mm": {"display": "Li MM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA787952", "pmid": "35239511", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}]}, "li ms": {"display": "Li MS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15257", "pmid": "28149696", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB15257", "pmid": "34362295", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}]}, "li p": {"display": "Li P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "li q": {"display": "Li Q", "group": false, "n_studies": 12, "studies": [{"acc": "PRJEB20308", "pmid": "29669589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Similarity of the dog and human gut microbiomes in gene content and response to diet"}, {"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}, {"acc": "PRJNA1338803", "pmid": "41421358", "pos": null, "reason_code": "host_synthetic", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of faecal fermentation in vitro"}, {"acc": "PRJNA401977", "pmid": "41620634", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome from patients with gestational diabetes mellitus"}, {"acc": "PRJNA422434", "pmid": "41421358", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA477424", "pmid": "30619206", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "panda gut metagenome raw sequence reads Raw sequence reads"}, {"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}, {"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}, {"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}, {"acc": "PRJNA781781", "pmid": "38169289", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of Lactobacillus plantarum P-8 on Growth Performance and Gut Microbiota of Weaned…"}, {"acc": "PRJNA806510", "pmid": "40487637", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of Gut Microbiota Mediated Metformin Monotherapy Failure in Type 2 Diabetes Mellitus"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "li qh": {"display": "Li QH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1428929", "pmid": "42022809", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota and Metabolome Signatures in Preterm Infants with High versus Low Risk for…"}]}, "li r": {"display": "Li R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15111", "pmid": "26932197", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}]}, "li s": {"display": "Li S", "group": false, "n_studies": 56, "studies": [{"acc": "PRJDB39536", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Large-scale single-cell long-read genomics enables high-resolution microbiome profiling (…"}, {"acc": "PRJEB24006", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB27928", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB32631", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "38424077", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB36820", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB6456", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9524", "pmid": "38424077", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Expanded Enteric Virome and Altered Bacterial Microbiome in Acquired Immunodeficiency Syn…"}, {"acc": "PRJNA1052964", "pmid": "39034349", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA1052964", "pmid": "40860434", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA272371", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA301903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA385126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA387903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Intestinal Virome Changes Precede Autoimmunity in Type I Diabetes Susceptible Children"}, {"acc": "PRJNA390646", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA401977", "pmid": "41620634", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome from patients with gestational diabetes mellitus"}, {"acc": "PRJNA407341", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA427478", "pmid": "30107526", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pomacea canaliculata isolate:SZHN2017 Genome sequencing and assembly"}, {"acc": "PRJNA433058", "pmid": "37854337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA436562", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA446038", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA491626", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut virome of Cameroonians living in close proximity with bats"}, {"acc": "PRJNA521878", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA545408", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Longitudinal study of the human gut virome"}, {"acc": "PRJNA555020", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA562766", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA657818", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA779578", "pmid": "36503572", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Cervus nippon Raw sequence reads"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA825364", "pmid": "36045431", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Droplet microfluidic cultivation for bee gut bacteria"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}, {"acc": "PRJNA924947", "pmid": "38651859", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}]}, "li sh": {"display": "Li SH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA312041", "pmid": "27226242", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human fecal raw sequence reads"}]}, "li sl": {"display": "Li SL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB57970", "pmid": "36816587", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "CCU infection"}]}, "li ss": {"display": "Li SS", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB12357", "pmid": "27126044", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB46778", "pmid": "27126044", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}, {"acc": "PRJNA289586", "pmid": "30747106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}]}, "li t": {"display": "Li T", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB23052", "pmid": "41511111", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJEB63183", "pmid": "37457984", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Interactions Between Bifidobacterium and Bacteroides and Human Milk Oligosaccharides and…"}, {"acc": "PRJNA683873", "pmid": null, "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Severe acute respiratory syndrome coronavirus 2 Genome sequencing"}]}, "li w": {"display": "Li W", "group": false, "n_studies": 6, "studies": [{"acc": "PRJDB28401", "pmid": "37261381", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenome investigation of ocular microbiota of cataract patients with and without type…"}, {"acc": "PRJNA1428929", "pmid": "42022809", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota and Metabolome Signatures in Preterm Infants with High versus Low Risk for…"}, {"acc": "PRJNA543520", "pmid": "31337807", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "32239170", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA675914", "pmid": "34302348", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "hydrothermally inactive sulfides metagenomes"}, {"acc": "PRJNA750571", "pmid": "35306253", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Resistome in sewage surviellance"}, {"acc": "PRJNA902684", "pmid": "39135694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome level reveals the regulatory effect of probiotics to mastitis rats"}]}, "li x": {"display": "Li X", "group": false, "n_studies": 31, "studies": [{"acc": "PRJDB28434", "pmid": "37979711", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Macrogenomic data of mice (PRJCA016720)"}, {"acc": "PRJDB39536", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Large-scale single-cell long-read genomics enables high-resolution microbiome profiling (…"}, {"acc": "PRJDB40947", "pmid": "38745649", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Evaluation of the effect of Fangyu acid lowering granules on improving Hyperuricemia (PRJ…"}, {"acc": "PRJNA1024085", "pmid": "38423525", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut microbiota facilitate adaptation of invasive moths to new host plants"}, {"acc": "PRJNA1151839", "pmid": "39663251", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Salivary microbiome in burning mouth syndrome"}, {"acc": "PRJNA1464060", "pmid": "42293186", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Efficacy of Bifidobacterium lactis BLa80 in Preventing Early Childhood Eczema and Respira…"}, {"acc": "PRJNA352475", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356809", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "the gut metagenome of ginat pandas , bears and carnivores Raw sequence reads"}, {"acc": "PRJNA358755", "pmid": "35568757", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "wild and captive gut Raw sequence reads"}, {"acc": "PRJNA379120", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA473126", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38486699", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA555020", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}, {"acc": "PRJNA63661", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA694773", "pmid": "33808480", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Inhibitory effects of breast milk-derived Lactobacillus rhamnosus Probio-M9 on colitis-as…"}, {"acc": "PRJNA695070", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Transmission and formation of microbiota in the ealry life"}, {"acc": "PRJNA695070", "pmid": "38818221", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Transmission and formation of microbiota in the ealry life"}, {"acc": "PRJNA702770", "pmid": "33676490", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "gut microbiomes of dogs and wolves"}, {"acc": "PRJNA715601", "pmid": "38135681", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "38730321", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715658", "pmid": "40266232", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Genome-resolved metagenomics of the chicken gut microbiome"}, {"acc": "PRJNA725613", "pmid": "34307461", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "colorectal gut microbiota"}, {"acc": "PRJNA735411", "pmid": "40266232", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Microbial Ecology of sea lion gut microbiome at Comau Fjord, Northern Patagonia (42 S). R…"}, {"acc": "PRJNA741607", "pmid": "38540144", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Inhibitory Effects of Lactulose on Colitis-Associated Carcinogenesis by Restoration of th…"}, {"acc": "PRJNA774076", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Gut metagenome of bamboo rats"}, {"acc": "PRJNA812695", "pmid": "37714338", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA835973", "pmid": "38540144", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Lactobacillus rhamnosus Probio-M9 alleviates colitis-associated tumorigenesis via modifie…"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}, {"acc": "PRJNA916259", "pmid": "38135681", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}, {"acc": "PRJNA916259", "pmid": "40140473", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}]}, "li y": {"display": "Li Y", "group": false, "n_studies": 28, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}, {"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}, {"acc": "PRJEB6456", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1119243", "pmid": "38947127", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbial Metabolism Analysis in the Cecum of New Zealand Rabbits under Short-Term Fatten…"}, {"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}, {"acc": "PRJNA273761", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA384716", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA473126", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA524703", "pmid": "40600714", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA63661", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}, {"acc": "PRJNA776087", "pmid": "36973820", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}, {"acc": "PRJNA821237", "pmid": "36071157", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}, {"acc": "PRJNA835720", "pmid": "40600714", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human feces Viral/Bacterial Metagenome"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "li yc": {"display": "Li YC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA704313", "pmid": "34835435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating sepsis with culture-Independent mNGS"}]}, "li yh": {"display": "Li YH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA778020", "pmid": "35089209", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Clinical metagenomic sequencing for rapid diagnosis of Neonatal meningitis caused by Urea…"}]}, "li ym": {"display": "Li YM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1428929", "pmid": "42022809", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota and Metabolome Signatures in Preterm Infants with High versus Low Risk for…"}]}, "li z": {"display": "Li Z", "group": false, "n_studies": 15, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}, {"acc": "PRJNA1070846", "pmid": "38647334", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal metagenomic sequecing"}, {"acc": "PRJNA1119243", "pmid": "38947127", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbial Metabolism Analysis in the Cecum of New Zealand Rabbits under Short-Term Fatten…"}, {"acc": "PRJNA290380", "pmid": "38193687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA296814", "pmid": "30135504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35847562", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA338014", "pmid": "28935730", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA589343", "pmid": "32912596", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The gut microbiota changes in Chinese children with autism spectrum disorders"}, {"acc": "PRJNA631602", "pmid": "32578861", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Rumen metagenome of Hu sheep fed urea"}, {"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}, {"acc": "PRJNA745199", "pmid": "29340642", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics sequencing of infectious microbes from ocular sarcoidosis tissue specimens"}, {"acc": "PRJNA779578", "pmid": "36503572", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Cervus nippon Raw sequence reads"}, {"acc": "PRJNA936938", "pmid": "36992458", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "searching for viruses in Asiatic toad Raw sequence reads"}, {"acc": "PRJNA946744", "pmid": "39666007", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Homo sapiens metagenomic sequences"}, {"acc": "PRJNA961946", "pmid": "37386612", "pos": "first", "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Human Genome sequencing and assembly"}]}, "liachko i": {"display": "Liachko I", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB21624", "pmid": "29491419", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of the rumen of Scottish cattle."}, {"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}]}, "lian m": {"display": "Lian M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}]}, "liang d": {"display": "Liang D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1390667", "pmid": "42071227", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal sample"}, {"acc": "PRJNA858926", "pmid": "37771701", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}]}, "liang j": {"display": "Liang J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1279254", "pmid": "41562608", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of synovial joint fluid collected from feedlot cattle. Raw sequenc…"}]}, "liang s": {"display": "Liang S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "liang x": {"display": "Liang X", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA356809", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "the gut metagenome of ginat pandas , bears and carnivores Raw sequence reads"}, {"acc": "PRJNA358755", "pmid": "35568757", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "wild and captive gut Raw sequence reads"}, {"acc": "PRJNA774076", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Gut metagenome of bamboo rats"}, {"acc": "PRJNA776087", "pmid": "36973820", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}, {"acc": "PRJNA961698", "pmid": "37610205", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Very Early Life Microbiome and Metabolome Correlates with Primary Vaccination Variability…"}]}, "liang y": {"display": "Liang Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA290380", "pmid": "38193687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA812695", "pmid": "37714338", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Metagenome"}]}, "liao h": {"display": "Liao H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA719915", "pmid": "34465850", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tumor microbiome contributes to an aggressive phenotype in the basal-like subtype of panc…"}]}, "liao hy": {"display": "Liao HY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762484", "pmid": "34996879", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota in patients with Parkinson disease"}]}, "liao j": {"display": "Liao J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1067813", "pmid": "39731916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C. difficile-associated mouse and human fecal metagenomes"}]}, "liao l": {"display": "Liao L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA592843", "pmid": "32100127", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Therapeutic effects of the in vitro cultured human gut microbiota as transplants on alter…"}]}, "liao wt": {"display": "Liao WT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA936783", "pmid": "35486954", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Draft genome sequences of Group B Streptococcus isolates from infected infants or children"}]}, "liao y": {"display": "Liao Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}]}, "liberian meningococcal disease outbreak response team": {"display": "Liberian Meningococcal Disease Outbreak Response Team", "group": true, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "licandro h": {"display": "Licandro H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60621", "pmid": "37989857", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Is the oral microbiota implicated in taste perception? Investigation of saliva and tongue…"}]}, "licciardi pv": {"display": "Licciardi PV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "licht tr": {"display": "Licht TR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1159139", "pmid": "39377603", "pos": null, "reason_code": "host_synthetic", "src": "L", "status": "excluded", "title_short": "I-TIM-2 validation (VAL)"}, {"acc": "PRJNA812583", "pmid": "36352460", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level metagenomics reveal microbial transfer from donor to infant after fecal micr…"}]}, "lichtman js": {"display": "Lichtman JS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49206", "pmid": "28839072", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}]}, "licona-cassani c": {"display": "Licona-Cassani C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1260751", "pmid": "41536238", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal Obesity Alters Human Milk Oligosaccharides Content and Promotes Early Acquisitio…"}]}, "lieberman td": {"display": "Lieberman TD", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1052084", "pmid": "38260404", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intraspecies dynamics underlie the apparent stability of two important skin microbiome sp…"}, {"acc": "PRJNA1052084", "pmid": "40315837", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intraspecies dynamics underlie the apparent stability of two important skin microbiome sp…"}, {"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}]}, "liebisch g": {"display": "Liebisch G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB25727", "pmid": "31138673", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The impact of AXOS intake in overweight individuals with metabolic syndrome."}, {"acc": "PRJEB36898", "pmid": "33629506", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics analysis on overweight subjects under a caloric restriction intervention with…"}]}, "lietman tm": {"display": "Lietman TM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "lifelines next cohort study": {"display": "Lifelines NEXT cohort study", "group": true, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "ligezka a": {"display": "Ligezka A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821920", "pmid": "41782637", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mental Health Screening for Babies. What can we learn from infant and caregiver behaviors…"}]}, "light sh": {"display": "Light SH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "41118772", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "ligibel j": {"display": "Ligibel J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1295573", "pmid": "41760690", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The intestinal microbiome of patients with newly diagnosed invasive breast cancer and duc…"}]}, "lihua g": {"display": "Lihua G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6972", "pmid": "25491920", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The microbial colonization of the intestine during the first monthsof life constitutes th…"}]}, "likovsky j": {"display": "Likovsky J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "lilja he": {"display": "Lilja HE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46337", "pmid": "28274256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}]}, "lim cse": {"display": "Lim CSE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA947616", "pmid": "37974294", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome and bloodstream infections among premature infants in Singapore"}]}, "lim es": {"display": "Lim ES", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1045584", "pmid": "39185682", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of SARS-CoV-2 in stool sample from women living with HIV and HIV-negative women an…"}, {"acc": "PRJNA1070654", "pmid": "38712930", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Seasonality of Respiratory, Enteric and Urinary Viruses in Wastewater"}, {"acc": "PRJNA1090887", "pmid": "39053521", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human adenovirus outbreak at a university campus monitored by wastewater and clinical sur…"}, {"acc": "PRJNA635738", "pmid": "33727396", "pos": "last", "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Breast milk Microbiome/Virome of HIV+ Kenyan Women is Not Altered by Immunosuppression"}]}, "lim hl": {"display": "Lim HL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "lim yw": {"display": "Lim YW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA80601", "pmid": "23554892", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterization of the nasopharyngeal virome in patients with influenza-like illness of…"}]}, "limaye ap": {"display": "Limaye AP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28100494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "limborg mt": {"display": "Limborg MT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64334", "pmid": "38294254", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Multi-omics of host-gut microbiota interactions in healthy and parasitized farmed Atlanti…"}]}, "lin a": {"display": "Lin A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1187541", "pmid": "39753133", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Raw metagenomics sequencing from human hippocampi."}]}, "lin ae": {"display": "Lin AE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "lin ch": {"display": "Lin CH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762484", "pmid": "34996879", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota in patients with Parkinson disease"}]}, "lin cr": {"display": "Lin CR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1056831", "pmid": "39006502", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota of infant cholestasis in Taiwan"}]}, "lin d": {"display": "Lin D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "lin dl": {"display": "Lin DL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "lin h": {"display": "Lin H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB102033", "pmid": "41330369", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lantibiotic-producing bacteria impact microbiome resilience and colonization resistance"}, {"acc": "PRJNA504891", "pmid": "41118772", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "lin j": {"display": "Lin J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "lin jd": {"display": "Lin JD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1236482", "pmid": "42020750", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Short-term clinical evolution of Enterococcus faecium"}]}, "lin k": {"display": "Lin K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB38192", "pmid": "37674580", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Utility of clinical metagenomics in diagnosing malignancies in a cohort of patients with…"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "lin l": {"display": "Lin L", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}, {"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}, {"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "lin m": {"display": "Lin M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "36220843", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": "37938270", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "lin mj": {"display": "Lin MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "30674273", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "33827948", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "lin my": {"display": "Lin MY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}]}, "lin nu": {"display": "Lin NU", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1295573", "pmid": "41760690", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The intestinal microbiome of patients with newly diagnosed invasive breast cancer and duc…"}]}, "lin ny": {"display": "Lin NY", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "lin py": {"display": "Lin PY", "group": false, "n_studies": 7, "studies": [{"acc": "PRJNA273761", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA327106", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA396794", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA63661", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "lin q": {"display": "Lin Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA401977", "pmid": "41620634", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome from patients with gestational diabetes mellitus"}]}, "lin w": {"display": "Lin W", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB63183", "pmid": "37457984", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Interactions Between Bifidobacterium and Bacteroides and Human Milk Oligosaccharides and…"}, {"acc": "PRJNA401977", "pmid": "41620634", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome from patients with gestational diabetes mellitus"}]}, "lin x": {"display": "Lin X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38446", "pmid": "34001614", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiota (16S rDNA sequencing) and microbiome (shotgun sequencing) data of a pig model…"}]}, "lin y": {"display": "Lin Y", "group": false, "n_studies": 11, "studies": [{"acc": "PRJEB14964", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Maternal Secretor Status and Microbiota Composition"}, {"acc": "PRJEB27914", "pmid": "41751912", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Six-week endurance exercise alters gut metagenome that is not reflected in systemic metab…"}, {"acc": "PRJEB29078", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA307231", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA32089", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}, {"acc": "PRJNA322188", "pmid": "41751912", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA445932", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA541981", "pmid": "41751912", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome in melanoma patients"}, {"acc": "PRJNA565546", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "fecal sample Raw sequence reads"}, {"acc": "PRJNA644022", "pmid": "33891391", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiomes in algae biofilm and activated sludge under comparative operating conditions"}, {"acc": "PRJNA763023", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Dysbiosis of human gut microbiome in young-onset colorectal cancer"}]}, "lin yt": {"display": "Lin YT", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}, {"acc": "PRJNA762484", "pmid": "34996879", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota in patients with Parkinson disease"}]}, "lind l": {"display": "Lind L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}, {"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "lindberg g": {"display": "Lindberg G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633381", "pmid": "33662387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "IgA deficiency microbiota"}]}, "lindberg m": {"display": "Lindberg M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}, {"acc": "PRJEB59861", "pmid": "31678062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "lindner ms": {"display": "Lindner MS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "lindo j": {"display": "Lindo J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "ling l": {"display": "Ling L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA259179", "pmid": "25337874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Studies of intestinal microbiome and infection resistance"}]}, "lingappa jr": {"display": "Lingappa JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28287142", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28711653", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29281620", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "linneman la": {"display": "Linneman LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA911205", "pmid": "37726348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Psychosocial adversity experienced in utero and early life is associated with variation i…"}]}, "linz b": {"display": "Linz B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}]}, "liong mt": {"display": "Liong MT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1464060", "pmid": "42293186", "pos": "last", "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Efficacy of Bifidobacterium lactis BLa80 in Preventing Early Childhood Eczema and Respira…"}]}, "liou jm": {"display": "Liou JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762484", "pmid": "34996879", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota in patients with Parkinson disease"}]}, "lipsitch m": {"display": "Lipsitch M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA610982", "pmid": "33308267", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Determinants of S. aureus carriage in the developing infant nasal microbiome"}]}, "lipuma jj": {"display": "LiPuma JJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA530252", "pmid": "32631930", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effect of cycled, inhaled tobramycin on the sputum microbiome in cystic fibrosis"}]}, "lisco a": {"display": "Lisco A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1369410", "pmid": "42242497", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics sequencing from patients with CD4 lymphopenia"}, {"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "lishman h": {"display": "Lishman H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "litchman e": {"display": "Litchman E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "30710083", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "litonjua aa": {"display": "Litonjua AA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "little as": {"display": "Little AS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "41118772", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "little jc": {"display": "Little JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1236379", "pmid": "40886152", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Infant BBB"}]}, "littlewood dtj": {"display": "Littlewood DTJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "littman dr": {"display": "Littman DR", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "littmann e": {"display": "Littmann E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA259179", "pmid": "25337874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Studies of intestinal microbiome and infection resistance"}]}, "littmann er": {"display": "Littmann ER", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}, {"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "litvintseva ap": {"display": "Litvintseva AP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}]}, "liu b": {"display": "Liu B", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1002114", "pmid": "37823665", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Direct prediction of carbapenem-resistance for Pseudomonas aeruginosa by whole genome seq…"}, {"acc": "PRJNA427478", "pmid": "30107526", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pomacea canaliculata isolate:SZHN2017 Genome sequencing and assembly"}, {"acc": "PRJNA580164", "pmid": "32552447", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome Raw sequence reads"}, {"acc": "PRJNA702770", "pmid": "33676490", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "gut microbiomes of dogs and wolves"}, {"acc": "PRJNA866654", "pmid": "36358819", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Exploring gut microbiome in predicting efficacy of immuno-therapy in non-small cell lung…"}]}, "liu c": {"display": "Liu C", "group": false, "n_studies": 7, "studies": [{"acc": "PRJDB38192", "pmid": "37674580", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Utility of clinical metagenomics in diagnosing malignancies in a cohort of patients with…"}, {"acc": "PRJNA427478", "pmid": "30107526", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pomacea canaliculata isolate:SZHN2017 Genome sequencing and assembly"}, {"acc": "PRJNA433058", "pmid": "37854337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA702770", "pmid": "33676490", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "gut microbiomes of dogs and wolves"}, {"acc": "PRJNA876804", "pmid": "36357381", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Human Metagenomic Metagenome"}, {"acc": "PRJNA905328", "pmid": "37904586", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut microbes sequencing"}, {"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "liu cm": {"display": "Liu CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "liu cy": {"display": "Liu CY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB7772", "pmid": "25619688", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}]}, "liu d": {"display": "Liu D", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1390667", "pmid": "42071227", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal sample"}, {"acc": "PRJNA715658", "pmid": "40266232", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Genome-resolved metagenomics of the chicken gut microbiome"}, {"acc": "PRJNA735411", "pmid": "40266232", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Microbial Ecology of sea lion gut microbiome at Comau Fjord, Northern Patagonia (42 S). R…"}, {"acc": "PRJNA812695", "pmid": "37714338", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Metagenome"}]}, "liu dx": {"display": "Liu DX", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "liu et": {"display": "Liu ET", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA16209", "pmid": "16336043", "pos": null, "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of RNA viruses in human feces"}]}, "liu f": {"display": "Liu F", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}, {"acc": "PRJNA1231247", "pmid": "42746483", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "metagenome Raw sequence reads"}]}, "liu g": {"display": "Liu G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA255985", "pmid": "25279840", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human saliva, creek water, and synthetic metagenomic samples used in selective DNA isolat…"}, {"acc": "PRJNA475137", "pmid": "33245689", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhizopus oryzae Genome sequencing and assembly"}]}, "liu h": {"display": "Liu H", "group": false, "n_studies": 10, "studies": [{"acc": "PRJDB39536", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Large-scale single-cell long-read genomics enables high-resolution microbiome profiling (…"}, {"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}, {"acc": "PRJNA259179", "pmid": "25337874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Studies of intestinal microbiome and infection resistance"}, {"acc": "PRJNA321058", "pmid": "32508773", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Increased intestinal microbial diversity following fecal microbiota transplant for active…"}, {"acc": "PRJNA352475", "pmid": "32508773", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA421859", "pmid": "29886344", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sichuan takin Metagenome"}, {"acc": "PRJNA484151", "pmid": "32508773", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Rural and Urban infant''s fecal microbiota study"}, {"acc": "PRJNA776087", "pmid": "36973820", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}, {"acc": "PRJNA779578", "pmid": "36503572", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Cervus nippon Raw sequence reads"}, {"acc": "PRJNA876377", "pmid": "37007478", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soil microbiome of grassland bulk soil Metagenome"}]}, "liu j": {"display": "Liu J", "group": false, "n_studies": 35, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}, {"acc": "PRJEB32631", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "30258040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "38882494", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB73590", "pmid": "37111504", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}, {"acc": "PRJNA1078280", "pmid": "38405928", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Quantifying forms and functions of intestinal bile acid pools in mice"}, {"acc": "PRJNA273761", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "38882494", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "38882494", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "38882494", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA301903", "pmid": "38882494", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38882494", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "38882494", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38882494", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA349463", "pmid": "28915922", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Urban vs. Rural China Microbiome"}, {"acc": "PRJNA352475", "pmid": "38882494", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "38882494", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA384716", "pmid": "38882494", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "38882494", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA400115", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}, {"acc": "PRJNA436562", "pmid": "30258040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "38882494", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38882494", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38882494", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA522027", "pmid": "35087906", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Taisui metagenomic sequencing"}, {"acc": "PRJNA522699", "pmid": "31427729", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}, {"acc": "PRJNA63661", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA63661", "pmid": "38882494", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}, {"acc": "PRJNA806984", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}, {"acc": "PRJNA834762", "pmid": "38427700", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA837236", "pmid": "38427700", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA876377", "pmid": "37007478", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soil microbiome of grassland bulk soil Metagenome"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}, {"acc": "PRJNA912682", "pmid": "38427700", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA994433", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Variability of Bifidobacterium Species in the Infant Gut is Independent of M…"}, {"acc": "PRJNA994670", "pmid": "39242698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial community characterization and molecular resistance monitoring in geriatric int…"}]}, "liu js": {"display": "Liu JS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "liu k": {"display": "Liu K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1166969", "pmid": "39470277", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Multi-Omics Analysis of the Microbial Profile Characteristics Associated with Pulmonary A…"}, {"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "liu l": {"display": "Liu L", "group": false, "n_studies": 15, "studies": [{"acc": "PRJEB6456", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1160256", "pmid": "39919360", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": "40941064", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": null, "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1177813", "pmid": "39796584", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "2FL age specific bifidobacterium effect"}, {"acc": "PRJNA1456031", "pmid": "42353547", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of selected contaminants on the human gut microbiome tested ex vivo"}, {"acc": "PRJNA1477482", "pmid": null, "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbial communities developed in vitro compared to the source inoculums"}, {"acc": "PRJNA475246", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA486782", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA510445", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA630999", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA821338", "pmid": "36259361", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial pathogens and antimicrobial resistance diagnosis workflow using Nanopore adapti…"}, {"acc": "PRJNA869513", "pmid": "36259361", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An ultra-sensitive bacterial pathogen and antimicrobial resistance diagnosis workflow usi…"}, {"acc": "PRJNA893635", "pmid": "36361763", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}, {"acc": "PRJNA893635", "pmid": "37297350", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}, {"acc": "PRJNA961974", "pmid": "38236043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The effects of selected plant extracts on the human gut microbiome"}]}, "liu m": {"display": "Liu M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA775062", "pmid": "41877288", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Landscapes of bacterial, viral and metabolic signatures and their interaction in early-we…"}]}, "liu n": {"display": "Liu N", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1338803", "pmid": "41421358", "pos": null, "reason_code": "host_synthetic", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of faecal fermentation in vitro"}, {"acc": "PRJNA422434", "pmid": "41421358", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "liu p": {"display": "Liu P", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}, {"acc": "PRJNA973819", "pmid": "38188910", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Pathogenetic characterization of a Micrococcus luteus strain isolated from an infant"}]}, "liu py": {"display": "Liu PY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA704313", "pmid": "34835435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating sepsis with culture-Independent mNGS"}]}, "liu q": {"display": "Liu Q", "group": false, "n_studies": 24, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}, {"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJNA1402009", "pmid": "41726387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "faeces of British shorthair Raw sequence reads"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA289925", "pmid": "26701081", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candidatus [Bacteroides] periocalifornicus isolate:12B Genome sequencing and assembly"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA715634", "pmid": "34035441", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Novel Strain Level Resolution of Crohns Disease Mucosa-Associated Microbiota via an ex vi…"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}, {"acc": "PRJNA876804", "pmid": "36357381", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Human Metagenomic Metagenome"}]}, "liu s": {"display": "Liu S", "group": false, "n_studies": 4, "studies": [{"acc": "PRJDB29433", "pmid": "39510074", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nanopore-based metagenomic sequencing analysis of control subjects and patients with AD.…"}, {"acc": "PRJNA1052964", "pmid": "39034349", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA1052964", "pmid": "40860434", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA1218236", "pmid": "40144527", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Analysis of Intragastric Administration of Donkey Milk on Mouse Immunity Using Gut Microb…"}, {"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}]}, "liu sy": {"display": "Liu SY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA412411", "pmid": "34163067", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}]}, "liu t": {"display": "Liu T", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB46659", "pmid": "40241748", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJNA1018083", "pmid": "38705065", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "comammox supports stable production of ammonia nitrate from urine"}, {"acc": "PRJNA1425751", "pmid": "41994268", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome"}, {"acc": "PRJNA806510", "pmid": "40487637", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of Gut Microbiota Mediated Metformin Monotherapy Failure in Type 2 Diabetes Mellitus"}]}, "liu w": {"display": "Liu W", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA336061", "pmid": "28801639", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prevotella enterotype related metagenome sequencing"}, {"acc": "PRJNA776087", "pmid": "36973820", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}, {"acc": "PRJNA902684", "pmid": "39135694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome level reveals the regulatory effect of probiotics to mastitis rats"}]}, "liu wd": {"display": "Liu WD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA704313", "pmid": "34835435", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating sepsis with culture-Independent mNGS"}]}, "liu wh": {"display": "Liu WH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858926", "pmid": "36687649", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}]}, "liu wj": {"display": "Liu WJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA936938", "pmid": "36992458", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "searching for viruses in Asiatic toad Raw sequence reads"}]}, "liu wt": {"display": "Liu WT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA272371", "pmid": "29049378", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}]}, "liu x": {"display": "Liu X", "group": false, "n_studies": 6, "studies": [{"acc": "PRJDB29433", "pmid": "39510074", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nanopore-based metagenomic sequencing analysis of control subjects and patients with AD.…"}, {"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJNA1090034", "pmid": "39706182", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}, {"acc": "PRJNA847006", "pmid": "37049457", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA847006", "pmid": "37280255", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA847017", "pmid": "37280255", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads of GF mice"}, {"acc": "PRJNA902684", "pmid": "39135694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome level reveals the regulatory effect of probiotics to mastitis rats"}]}, "liu xf": {"display": "Liu XF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1002114", "pmid": "37823665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Direct prediction of carbapenem-resistance for Pseudomonas aeruginosa by whole genome seq…"}]}, "liu y": {"display": "Liu Y", "group": false, "n_studies": 19, "studies": [{"acc": "PRJDB39536", "pmid": null, "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Large-scale single-cell long-read genomics enables high-resolution microbiome profiling (…"}, {"acc": "PRJEB23052", "pmid": "33510860", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJEB26810", "pmid": "40347294", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}, {"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}, {"acc": "PRJNA1065277", "pmid": "39268487", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal factors are more capable of influencing the structure of infant gut microbes and…"}, {"acc": "PRJNA1231247", "pmid": "42746483", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "metagenome Raw sequence reads"}, {"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}, {"acc": "PRJNA377096", "pmid": "35222325", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soda lake innocuated bioreactors"}, {"acc": "PRJNA396840", "pmid": "28979798", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomic and metatranscriptomic analysis of saliva reveals disease-associated microbio…"}, {"acc": "PRJNA427478", "pmid": "24865920", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pomacea canaliculata isolate:SZHN2017 Genome sequencing and assembly"}, {"acc": "PRJNA516054", "pmid": "33510860", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Whole metagenomic analysis of the enteric microbiota in children with autism spectrum dis…"}, {"acc": "PRJNA702770", "pmid": "33676490", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "gut microbiomes of dogs and wolves"}, {"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}, {"acc": "PRJNA725613", "pmid": "34307461", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "colorectal gut microbiota"}, {"acc": "PRJNA728908", "pmid": "35675435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of baseline individuals in a 4.6-year non-alcoholic fatty liver disease pr…"}, {"acc": "PRJNA876377", "pmid": "37007478", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soil microbiome of grassland bulk soil Metagenome"}, {"acc": "PRJNA930375", "pmid": "37264481", "pos": "first", "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Addition of cariogenic pathogens to complex oral microbiota drives significant changes in…"}, {"acc": "PRJNA994670", "pmid": "39242698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial community characterization and molecular resistance monitoring in geriatric int…"}]}, "liu yc": {"display": "Liu YC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA866095", "pmid": "36046746", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Genome sequencing and assembly"}]}, "liu yy": {"display": "Liu YY", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB23524", "pmid": "38868710", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS data from FMT trial for the treatment of recurrent Clostridium difficile infection"}, {"acc": "PRJEB6456", "pmid": "38868710", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA285502", "pmid": "38868710", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota transplantation (FMT) for ulcerative colitis"}, {"acc": "PRJNA597371", "pmid": "34193290", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal Selective Pressure and Coevolution Project Part 4 human placebo Metagenome"}, {"acc": "PRJNA625520", "pmid": "38868710", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Linking strain engraftment in fecal microbiota transplantation with maintenance of remiss…"}, {"acc": "PRJNA669352", "pmid": "33820946", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome assembly for sulfonamide subsistence and the transfer of genetic determinants"}]}, "liu yz": {"display": "Liu YZ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA312041", "pmid": "27226242", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human fecal raw sequence reads"}]}, "liu z": {"display": "Liu Z", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB15111", "pmid": "26932197", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}, {"acc": "PRJNA497801", "pmid": "31701197", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "bovine fecal metagenome"}, {"acc": "PRJNA812695", "pmid": "37714338", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Metagenome"}]}, "livny j": {"display": "Livny J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}]}, "liwinski t": {"display": "Liwinski T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB86263", "pmid": "39218875", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gender-affirming hormonal therapy induces a gender-concordant fecal metagenome transition…"}]}, "liyanage r": {"display": "Liyanage R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA977671", "pmid": "38320392", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Microbiome analysis of cold related stress in poultry"}]}, "lizano e": {"display": "Lizano E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32319", "pmid": "32004756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Reads sequenced from a parchment blood stain attributed to the french revolutionary Jean…"}, {"acc": "PRJEB43276", "pmid": "34527890", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Salmonella enterica from a soldier from the 1652-siege of Barcelona (Spain) supports hist…"}]}, "llaurado a": {"display": "Llauradó A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "llopis m": {"display": "Llopis M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}]}, "llovera nadal l": {"display": "Llovera Nadal L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43276", "pmid": "34527890", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Salmonella enterica from a soldier from the 1652-siege of Barcelona (Spain) supports hist…"}]}, "lloyd cm": {"display": "Lloyd CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1080233", "pmid": "39214237", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Breathing Together severe wheeze and asthma cohort"}]}, "lloyd j": {"display": "Lloyd J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28369502", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "lloyd re": {"display": "Lloyd RE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA416160", "pmid": "39856391", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "The Environmental Determinants of Diabetes in the Young (TEDDY) Parent Study"}]}, "lloyd-price j": {"display": "Lloyd-Price J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA275349", "pmid": "28953883", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA48479", "pmid": "28953883", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "lo ch": {"display": "Lo CH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "lo d": {"display": "Lo D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "lo ekk": {"display": "Lo EKK", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1151597", "pmid": "40405038", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Probiotics mixture suppresses MASLD-associated hepatocellular carcinoma"}, {"acc": "PRJNA1229795", "pmid": "40691217", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Theabrownin, in combination with Zearalenone, suppressed colitis-associated colorectal ca…"}, {"acc": "PRJNA1366117", "pmid": "39489290", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The Role of Amino Acid-Derived Metabolites in Non-alcoholic fatty liver disease (NAFLD) D…"}, {"acc": "PRJNA1366117", "pmid": "40015656", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The Role of Amino Acid-Derived Metabolites in Non-alcoholic fatty liver disease (NAFLD) D…"}, {"acc": "PRJNA1367284", "pmid": "38575146", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Probiotics mixture suppresses diet-induced MASLD: Fecal metagenomics of mice sample"}]}, "lo sw": {"display": "Lo SW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37312", "pmid": "33072693", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "The utility of shotgun metagenomics to investigate the carriage of, and longitudinal chan…"}]}, "lober u": {"display": "Löber U", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB15633", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJNA1262354", "pmid": "41603547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMBARK - Establishing a Monitoring Baseline for Antimicrobial Resistance in Key environme…"}, {"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}, {"acc": "PRJNA284162", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "STL Infant Twins Microbiome"}, {"acc": "PRJNA301903", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA379120", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA497734", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}, {"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "lobrinus ja": {"display": "Lobrinus JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81450", "pmid": "40562730", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Streptococcus gordonii endocarditis"}]}, "locatelli e": {"display": "Locatelli E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB121228", "pmid": "41683794", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}]}, "locatelli f": {"display": "Locatelli F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1013917", "pmid": "37965266", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Gut microbiota of an immunocompromised child with chronic cryptosporidiosis"}]}, "locher k": {"display": "Locher K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1092681", "pmid": "38696336", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Validation of an automated, end-to-end metagenomic sequencing assay for agnostic detectio…"}]}, "lochmann bs": {"display": "Lochmann BS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "lock ef": {"display": "Lock EF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019702", "pmid": "39043677", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "39265573", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}]}, "locke fl": {"display": "Locke FL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "lofdahl cg": {"display": "Löfdahl CG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "loffredo ca": {"display": "Loffredo CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "lohinai z": {"display": "Lohinai Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA626477", "pmid": "34002024", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut microbiota Raw sequence reads with and without cancer cachexia"}]}, "lohr ih": {"display": "Löhr IH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1305341", "pmid": "42013844", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "ProRIDE Deep Seq Metagenomics Raw sequence reads"}]}, "loizides-mangold u": {"display": "Loizides-Mangold U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36797", "pmid": "32711187", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The GLP-1R agonist liraglutide limits hepatic lipotoxicity and inflammatory response in m…"}]}, "lokmer a": {"display": "Lokmer A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27005", "pmid": "30726303", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}]}, "lolans k": {"display": "Lolans K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701961", "pmid": "37069665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA701961", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "loman nj": {"display": "Loman NJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1775", "pmid": "23571589", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diagnostic Metagenomics: A Culture-Independent Approach to the Investigation of Bacterial…"}]}, "lombard m": {"display": "Lombard M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA930765", "pmid": "36869137", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia felis reads and MAG recovered from a child who lived in southern Africa 2000 y…"}]}, "lombard v": {"display": "Lombard V", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB38446", "pmid": "34001614", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiota (16S rDNA sequencing) and microbiome (shotgun sequencing) data of a pig model…"}, {"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}]}, "london wb": {"display": "London WB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA787952", "pmid": "35239511", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}]}, "long x": {"display": "Long X", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}, {"acc": "PRJNA728908", "pmid": "35675435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of baseline individuals in a 4.6-year non-alcoholic fatty liver disease pr…"}]}, "longenecker al": {"display": "Longenecker AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA856701", "pmid": "36165604", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin microbiome of forehead in children with and without acne"}]}, "longhi c": {"display": "Longhi C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "longhi g": {"display": "Longhi G", "group": false, "n_studies": 135, "studies": [{"acc": "PRJDB4176", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJDB4525", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics of fecal bacterial consortium inhabiting healthy Asian children"}, {"acc": "PRJEB12669", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB17784", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The fecal microbiota in L-DOPA naive PD patients"}, {"acc": "PRJEB1786", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB21528", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB23662", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A novel affordable reagent for room temperature storage and transport of fecal samples fo…"}, {"acc": "PRJEB24557", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Alterations of the intestinal microbiome in patients with retinal artery occlusion"}, {"acc": "PRJEB24771", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB25514", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A cross-sectional study of compositional and functional profiles of gut microbiota in Sar…"}, {"acc": "PRJEB28338", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Influence of travel on the gut microbiome of cricketers"}, {"acc": "PRJEB30924", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Comparative analysis of amplicon and metagenomic sequencing methods reveals key features…"}, {"acc": "PRJEB32135", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32631", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB33013", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB35615", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Associations between the intestinal microbiome and the complement system in age-related m…"}, {"acc": "PRJEB36820", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB39813", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenomic study of the oral (saliva) and Gut (stool) microbiome in subjects with Croh…"}, {"acc": "PRJEB41102", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB42363", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB44737", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB6092", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "metagenome fecal microbiota, Ilumina seq reads of 12 individuals at 2 timepoints"}, {"acc": "PRJEB6456", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB8347", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJEB9576", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA215106", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA268964", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA319574", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA321218", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA321218", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA322188", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA324129", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human fecal microbiome before and after consumption of AH1206 - Raw sequence reads"}, {"acc": "PRJNA324672", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA331138", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of Italian metagenome"}, {"acc": "PRJNA336518", "pmid": "36123315", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA339012", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics analysis of donor and recepient samples from fecal transplant for Recurrent…"}, {"acc": "PRJNA339914", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA340216", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota and metagenomic diversity of omnivore, vegetarian and vegan healthy subjec…"}, {"acc": "PRJNA345144", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA360177", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA362284", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA371647", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Raw sequence reads"}, {"acc": "PRJNA373879", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Healthy human fecal metagenomes variably reactivate Irinotecan active metabolite"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379741", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "MECFS metagenomics"}, {"acc": "PRJNA382011", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics-Guided Pathogen Discovery in Travelers' Diarrhea"}, {"acc": "PRJNA384716", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA389927", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Viral and Bacterial Communities of Colorectal Cancer"}, {"acc": "PRJNA397219", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA412411", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA414479", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Total lipopolysaccharide from the human gut microbiome silences toll-like receptor signal…"}, {"acc": "PRJNA418941", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota functionality of healthy controls and individuals with kidney stones"}, {"acc": "PRJNA421881", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA422434", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422569", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA428202", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "healthy human gut metagenomics"}, {"acc": "PRJNA431482", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA436562", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA449784", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA473126", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA482729", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of native and acetylated high amylose maize starch on fecal pH, short chain fatty…"}, {"acc": "PRJNA485056", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA486795", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Modification of gut microbiota-bile acid-intestinal FXR signaling leads to the clinical b…"}, {"acc": "PRJNA487305", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Effects of non-nutritive sweeteners on the composition of the human gut microbiome"}, {"acc": "PRJNA489090", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489693", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA492716", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA497734", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA499081", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}, {"acc": "PRJNA503909", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA509512", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiota changes are associated with acquisition of antibiotic resistant genes among in…"}, {"acc": "PRJNA518912", "pmid": "36123315", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA521587", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521878", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA529124", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA532538", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome of the gut microbiota in multiple system atrophy patients"}, {"acc": "PRJNA542703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA544527", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA547717", "pmid": "36123315", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "human oral metagenome Raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA557731", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA562766", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA597839", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota, visceral fat and sleeve gastrectomy"}, {"acc": "PRJNA613834", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Functional Microbial Responses to Alcohol Abstinence in Patients with Alcohol Use Disorder"}, {"acc": "PRJNA615162", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615842", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}, {"acc": "PRJNA626004", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics Fecal Microbiome Dysbiosis in Parkinsons Disease"}, {"acc": "PRJNA628604", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}, {"acc": "PRJNA633576", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA637175", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}, {"acc": "PRJNA637878", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA637878", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA644725", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA649316", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Hi-C and metagenomic sequencing of neutropenic patient microbiomes"}, {"acc": "PRJNA663646", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "External validation cohorts for CRC-SNP analysis"}, {"acc": "PRJNA664544", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut microbes Metagenome"}, {"acc": "PRJNA665061", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665854", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS of feces and saliva of pancreatic cancer patients"}, {"acc": "PRJNA678426", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes."}, {"acc": "PRJNA678454", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of stool samples from two South African cohorts"}, {"acc": "PRJNA679346", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA685797", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The Influence of the gut microbiome on BCG-induced trained immunity"}, {"acc": "PRJNA686265", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-mediated metabolism effects on immunity in rural and urban African populat…"}, {"acc": "PRJNA686821", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics data from human stool microorganism Raw sequence reads"}, {"acc": "PRJNA688164", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA692830", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole genome metagenomic analysis of the gut microbiome in HIV-1 infected individuals on…"}, {"acc": "PRJNA695570", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA698986", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA705895", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA714678", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA715615", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural infant gut microbiota"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}, {"acc": "PRJNA742740", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiota of Kidney Stone patients and live-in partners"}, {"acc": "PRJNA750475", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Longitudinal Analysis of Gut Microbiome among healthy women"}, {"acc": "PRJNA762543", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA763503", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Character of microbial engraftment following the fecal microbiota transplantation in pati…"}, {"acc": "PRJNA772518", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA782810", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Exploring the species-level infant gut bacterial biodiversity through a meta-analysis and…"}, {"acc": "PRJNA833139", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gender-specific cross-generational microbial persistence of human gut microbes"}, {"acc": "PRJNA991269", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "loniewski i": {"display": "Łoniewski I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "loo exl": {"display": "Loo EXL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "looi c": {"display": "Looi C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}]}, "looijesteijn e": {"display": "Looijesteijn E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA798191", "pmid": "36038938", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bamboo microbiota study in infants"}]}, "loomba r": {"display": "Loomba R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA728908", "pmid": "35675435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of baseline individuals in a 4.6-year non-alcoholic fatty liver disease pr…"}]}, "loon e": {"display": "Loon E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468588", "pmid": "42490468", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome dynamics in a primary sclerosing cholangitis patient treated with vancomyc…"}]}, "looney rj": {"display": "Looney RJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1320699", "pmid": "42088498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "16S sequencing of infant stool Metagenome"}]}, "loos d": {"display": "Loos D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573821", "pmid": "32919472", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Whole Meta-genome shotgun sequencing of stool samples from human treated with antibiotics"}]}, "lopes e": {"display": "Lopes E", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "lopetuso lr": {"display": "Lopetuso LR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA643802", "pmid": "32859933", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "FMT for diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal…"}]}, "lopez g": {"display": "López G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA158313", "pmid": "23251564", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Iberian lynx fecal Metagenome"}]}, "lopez i": {"display": "Lopez I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39640590", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "lopez m": {"display": "López M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39407346", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "lopez mr": {"display": "Lopez MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "26893429", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "lopez s": {"display": "López S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA592261", "pmid": "32788688", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "35196791", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "36650178", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}]}, "lopez ta": {"display": "Lopez TA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": "40631735", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "lopez-isunza f": {"display": "López-Isunza F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6456", "pmid": "33753486", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "lopez-jimenez a": {"display": "López-Jiménez A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "lopez-rincon a": {"display": "Lopez-Rincon A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542703", "pmid": "42131447", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}]}, "lopez-romero a": {"display": "Lopez-Romero A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1184197", "pmid": "39856104", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Dietary fiber content in clinical ketogenic diets modifies the gut microbiome and seizure…"}]}, "lopo s": {"display": "Lopo S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "lopopolo m": {"display": "Lopopolo M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "lorentzen j": {"display": "Lorentzen J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "lorenzana i": {"display": "Lorenzana I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "lorenzi ha": {"display": "Lorenzi HA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA543520", "pmid": "31337807", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "32239170", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}]}, "lorenzi pl": {"display": "Lorenzi PL", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1084251", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tryptophan metabolites in fecal samples from healthy humans"}, {"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "loriot y": {"display": "Loriot Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "lorusso n": {"display": "Lorusso N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55075", "pmid": "38524774", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Molecular and phylogenetic characterization of the monkeypox outbreak in Andalusia, Spain"}]}, "losch s": {"display": "Lösch S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}]}, "lotan-pompan m": {"display": "Lotan-Pompan M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "lotscher y": {"display": "Lötscher Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}]}, "lotti t": {"display": "Lotti T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1252002", "pmid": "40615445", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Testing the limits of short-reads metagenomic classifications programs in waste water tre…"}, {"acc": "PRJNA1311054", "pmid": "41242561", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "AGS Pilot Scale Microbiome (Florence IDRO.SMART)"}]}, "lou b": {"display": "Lou B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "lou t": {"display": "Lou T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "lou yc": {"display": "Lou YC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA698986", "pmid": "34622230", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA698986", "pmid": "37973815", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA698986", "pmid": null, "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA717139", "pmid": "34154658", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitaliz…"}]}, "loughrin jh": {"display": "Loughrin JH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1168161", "pmid": "39858820", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Effect of anaerobic digestion of simple sugar amended dairy manure on microbial profiling"}]}, "loughry wj": {"display": "Loughry WJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA942254", "pmid": "37650612", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomics of fecal samples from ant-eating mammal species"}]}, "louie t": {"display": "Louie T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1121316", "pmid": "37060545", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}, {"acc": "PRJNA701961", "pmid": "37069665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA701961", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "louis j": {"display": "Louis J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26080", "pmid": "30356779", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Microbiota of infected dental roots indentified by 16S rRNA gene amplicon sequencing"}]}, "loulakaki m": {"display": "Loulakaki M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "lourenco tgb": {"display": "Lourenço TGB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA846723", "pmid": "39527605", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of oral administration of Bifidobacterium animalis subsp. lactis HN019 on the tre…"}]}, "lourenςo tgb": {"display": "Lourenςo TGB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396275", "pmid": "29988721", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Association between oral and gut microbiota in Periodontal Disease"}]}, "louro b": {"display": "Louro B", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "loutet mg": {"display": "Loutet MG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "louvet c": {"display": "Louvet C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB110927", "pmid": "39454892", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Durigast_F_prausnitzii_ICI_gastric_adenocarcinoma"}]}, "loux v": {"display": "Loux V", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB46489", "pmid": "35848130", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In situ characterization of the genomic content of viruses of methanogenic archaea in ana…"}, {"acc": "PRJEB6314", "pmid": "25496341", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Construction of a dairy microbial genome catalog opens new perspectives for the metagenom…"}]}, "louzoun y": {"display": "Louzoun Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "low a": {"display": "Low A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB17097", "pmid": "40226095", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "St Johns Island Resistome project"}, {"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}]}, "low sj": {"display": "Low SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA492716", "pmid": "31384000", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}]}, "lowenberg m": {"display": "Löwenberg M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46777", "pmid": "25836986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Ulcerative Colitis."}]}, "loy a": {"display": "Loy A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}]}, "loyens db": {"display": "Loyens DB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "lozupone ca": {"display": "Lozupone CA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB29078", "pmid": "30352933", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA145005", "pmid": "22030749", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}]}, "lu d": {"display": "Lu D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "lu h": {"display": "Lu H", "group": false, "n_studies": 7, "studies": [{"acc": "PRJNA356809", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "the gut metagenome of ginat pandas , bears and carnivores Raw sequence reads"}, {"acc": "PRJNA358755", "pmid": "35568757", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "wild and captive gut Raw sequence reads"}, {"acc": "PRJNA774076", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Gut metagenome of bamboo rats"}, {"acc": "PRJNA869587", "pmid": "36973710", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human viral metagenome Metagenome"}, {"acc": "PRJNA871195", "pmid": "36973710", "pos": "last", "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Intestinal phage analysis of neonates and children under 5 years old"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}, {"acc": "PRJNA973819", "pmid": "38188910", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Pathogenetic characterization of a Micrococcus luteus strain isolated from an infant"}]}, "lu j": {"display": "Lu J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1236379", "pmid": "40886152", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Infant BBB"}, {"acc": "PRJNA633324", "pmid": "33751816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Comparative microbial antibiotic resistome between urban and deep forest environments"}, {"acc": "PRJNA745199", "pmid": "29340642", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics sequencing of infectious microbes from ocular sarcoidosis tissue specimens"}]}, "lu jh": {"display": "Lu JH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA312041", "pmid": "27226242", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human fecal raw sequence reads"}]}, "lu jy": {"display": "Lu JY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "lu l": {"display": "Lu L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1236379", "pmid": "40886152", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Infant BBB"}]}, "lu q": {"display": "Lu Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1170175", "pmid": "40248366", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Vaginal Virome of Healthy Women and Patients with Vaginitis"}]}, "lu w": {"display": "Lu W", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA504891", "pmid": "37596617", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37596617", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA876804", "pmid": "36357381", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Human Metagenomic Metagenome"}]}, "lu x": {"display": "Lu X", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA1170175", "pmid": "40248366", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Vaginal Virome of Healthy Women and Patients with Vaginitis"}, {"acc": "PRJNA356809", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "the gut metagenome of ginat pandas , bears and carnivores Raw sequence reads"}, {"acc": "PRJNA358755", "pmid": "35568757", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "wild and captive gut Raw sequence reads"}, {"acc": "PRJNA774076", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Gut metagenome of bamboo rats"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}, {"acc": "PRJNA994670", "pmid": "39242698", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial community characterization and molecular resistance monitoring in geriatric int…"}]}, "lu xj": {"display": "Lu XJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504921", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA506811", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "HUMAN GUT RECTAL BACTERIA Metagenome"}]}, "lu yy": {"display": "Lu YY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA602729", "pmid": "40158141", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}]}, "lubcke t": {"display": "Lübcke T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40662", "pmid": "34675897", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Deep (Meta)genomics and (Meta)transcriptome Analyses of Fungal and Bacteria Consortia Fro…"}]}, "lubke h": {"display": "Lübke H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42185", "pmid": "34192537", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}]}, "luby jl": {"display": "Luby JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA911205", "pmid": "37726348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Psychosocial adversity experienced in utero and early life is associated with variation i…"}]}, "luby sp": {"display": "Luby SP", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA706606", "pmid": "36416733", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of Water Chlorination of Children's Gut Microbiomes in Bangladesh"}, {"acc": "PRJNA726052", "pmid": "35422497", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effects of drinking water chlorination on childrens intestinal flora and resistomes in Dh…"}]}, "lucas del pozo s": {"display": "Lucas Del Pozo S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59994", "pmid": "37892187", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evaluation of an Adapted Semi-Automated DNA Extraction for Human Salivary Shotgun Metagen…"}]}, "luchen cc": {"display": "Luchen CC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "41986657", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "ludvigsson j": {"display": "Ludvigsson J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB29078", "pmid": "37874156", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA296814", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA322188", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}]}, "luetge m": {"display": "Luetge M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}]}, "lugli ga": {"display": "Lugli GA", "group": false, "n_studies": 244, "studies": [{"acc": "PRJDB4176", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJDB4525", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics of fecal bacterial consortium inhabiting healthy Asian children"}, {"acc": "PRJEB10878", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB11419", "pmid": "33005310", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJEB11419", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJEB11532", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}, {"acc": "PRJEB1220", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB1220", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB1220", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB14935", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Term and preterm shotgun samples"}, {"acc": "PRJEB15257", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB15371", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB15633", "pmid": "33005310", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJEB1690", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB17784", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The fecal microbiota in L-DOPA naive PD patients"}, {"acc": "PRJEB1786", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB18755", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Connections between the gut microbiome and gestational diabetes mellitus"}, {"acc": "PRJEB19090", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}, {"acc": "PRJEB20800", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut resistome modulates resilience and recovery of gut microbiota after broad-spectrum an…"}, {"acc": "PRJEB21528", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB21528", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB23662", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A novel affordable reagent for room temperature storage and transport of fecal samples fo…"}, {"acc": "PRJEB24006", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24557", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Alterations of the intestinal microbiome in patients with retinal artery occlusion"}, {"acc": "PRJEB24771", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB25514", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A cross-sectional study of compositional and functional profiles of gut microbiota in Sar…"}, {"acc": "PRJEB26795", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB27005", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27005", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27005", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27928", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB27928", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB28338", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Influence of travel on the gut microbiome of cricketers"}, {"acc": "PRJEB28687", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "U.S. immigration westernizes the human gut microbiome"}, {"acc": "PRJEB28687", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "U.S. immigration westernizes the human gut microbiome"}, {"acc": "PRJEB29052", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29052", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29127", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB29127", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB30834", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30834", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30834", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30924", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Comparative analysis of amplicon and metagenomic sequencing methods reveals key features…"}, {"acc": "PRJEB32135", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32631", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "39287373", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB32794", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Distinct microbiome composition and metabolome exists across subgroups of elite Irish ath…"}, {"acc": "PRJEB32794", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Distinct microbiome composition and metabolome exists across subgroups of elite Irish ath…"}, {"acc": "PRJEB33013", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB33098", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB33098", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB35615", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Associations between the intestinal microbiome and the complement system in age-related m…"}, {"acc": "PRJEB36820", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB37731", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB38528", "pmid": "38441032", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB38528", "pmid": "39287373", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB39610", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39610", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39610", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39813", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenomic study of the oral (saliva) and Gut (stool) microbiome in subjects with Croh…"}, {"acc": "PRJEB41102", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB41102", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB41463", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB42013", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Non-invasive, robust and specific fecal microbiota-based screening for the early detectio…"}, {"acc": "PRJEB42363", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB42363", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB4336", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB44737", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB44737", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB46788", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB46788", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB6070", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6070", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6070", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6092", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "metagenome fecal microbiota, Ilumina seq reads of 12 individuals at 2 timepoints"}, {"acc": "PRJEB6456", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6997", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut and Oral Microbiome Dysbiosis in Rheumatoid Arthritis"}, {"acc": "PRJEB70237", "pmid": "40315414", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB70237", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB7774", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB7774", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB7774", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB8094", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB8347", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJEB9150", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbial succession follows acute secretory diarrhea in humans"}, {"acc": "PRJEB9150", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbial succession follows acute secretory diarrhea in humans"}, {"acc": "PRJEB9576", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA1046438", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA1046438", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA188481", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA215106", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA221723", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA231909", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA268964", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA275349", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA278393", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA278393", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA287207", "pmid": "26231653", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA289586", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA290380", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA297252", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal microbiota dynamics in hospitalized patients"}, {"acc": "PRJNA299502", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA301903", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA305507", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA305507", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA307231", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA317435", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "ImMicroDyn"}, {"acc": "PRJNA319574", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA320015", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Technical validation of ethanol fixation on stool canine and infant metagenomes"}, {"acc": "PRJNA321218", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA321218", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA322188", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA324129", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human fecal microbiome before and after consumption of AH1206 - Raw sequence reads"}, {"acc": "PRJNA324672", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA327106", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA331138", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of Italian metagenome"}, {"acc": "PRJNA336518", "pmid": "36123315", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA339012", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics analysis of donor and recepient samples from fecal transplant for Recurrent…"}, {"acc": "PRJNA339914", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA340216", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota and metagenomic diversity of omnivore, vegetarian and vegan healthy subjec…"}, {"acc": "PRJNA345144", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA360177", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA360177", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA362284", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA371647", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Raw sequence reads"}, {"acc": "PRJNA373879", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Healthy human fecal metagenomes variably reactivate Irinotecan active metabolite"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379741", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "MECFS metagenomics"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}, {"acc": "PRJNA380118", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA382011", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics-Guided Pathogen Discovery in Travelers' Diarrhea"}, {"acc": "PRJNA384716", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA386422", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA386422", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA386422", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA389927", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Viral and Bacterial Communities of Colorectal Cancer"}, {"acc": "PRJNA390646", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA392180", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA396794", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA397219", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA400072", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA400072", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA400072", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA401385", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA401385", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA401385", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA412411", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA413160", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenome data from infant stools samples raw sequence reads"}, {"acc": "PRJNA413162", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenome data from infant (PD and ProD) stools samples raw sequence reads"}, {"acc": "PRJNA414479", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Total lipopolysaccharide from the human gut microbiome silences toll-like receptor signal…"}, {"acc": "PRJNA417343", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y5 Cohort)"}, {"acc": "PRJNA418941", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota functionality of healthy controls and individuals with kidney stones"}, {"acc": "PRJNA421881", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA422434", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422569", "pmid": "30126456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA428202", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "healthy human gut metagenomics"}, {"acc": "PRJNA431482", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA431482", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA433459", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "gut metagenome Metagenome"}, {"acc": "PRJNA436562", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA438847", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA438847", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA438847", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA445968", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA449784", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA449784", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA472785", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Gut Microbiome Metagenomic Sequencing"}, {"acc": "PRJNA473126", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA482729", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of native and acetylated high amylose maize starch on fecal pH, short chain fatty…"}, {"acc": "PRJNA485056", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA486782", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486795", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Modification of gut microbiota-bile acid-intestinal FXR signaling leads to the clinical b…"}, {"acc": "PRJNA487305", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Effects of non-nutritive sweeteners on the composition of the human gut microbiome"}, {"acc": "PRJNA489090", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489693", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA489693", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA492716", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA497734", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA499081", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}, {"acc": "PRJNA503909", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA503909", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA509512", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiota changes are associated with acquisition of antibiotic resistant genes among in…"}, {"acc": "PRJNA517801", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS_Liver_disease"}, {"acc": "PRJNA518912", "pmid": "36123315", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA521587", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521587", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521878", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA521878", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA527208", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA527208", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA527208", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA529124", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529230", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "n of 1 study: Fecal Microbiota Transplantation in Multiple Sclerosis"}, {"acc": "PRJNA531203", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531203", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531203", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531316", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "CARBEPAD"}, {"acc": "PRJNA532310", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut metagenome"}, {"acc": "PRJNA532538", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome of the gut microbiota in multiple system atrophy patients"}, {"acc": "PRJNA542703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA544527", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA547591", "pmid": "36177457", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547591", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547591", "pmid": "39287373", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547717", "pmid": "36123315", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "human oral metagenome Raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA553191", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA553191", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA553191", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA555020", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA557731", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA562600", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Multi-omic analysis of Clostridioides difficile infection and response to therapy in pedi…"}, {"acc": "PRJNA562766", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA573963", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut Microbiome of Elderly Adults with Advanced Dementia"}, {"acc": "PRJNA588513", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA588513", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA588513", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA589622", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Underfeeding and oral vancomycin perturb the human gut microbiome and impair nutrient abs…"}, {"acc": "PRJNA589622", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Underfeeding and oral vancomycin perturb the human gut microbiome and impair nutrient abs…"}, {"acc": "PRJNA589866", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA594393", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to FOS intake"}, {"acc": "PRJNA594610", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to PDX intake"}, {"acc": "PRJNA594613", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to FOS intake followed by PDX intake"}, {"acc": "PRJNA594620", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to PDX intake followed by FOS intake"}, {"acc": "PRJNA597839", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota, visceral fat and sleeve gastrectomy"}, {"acc": "PRJNA598446", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A Novel Index for Predicting Health Status Using Species-level Gut Microbiome Profiling"}, {"acc": "PRJNA606198", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Comparison of methods to collect fecal samples for microbiome studies using whole-genome…"}, {"acc": "PRJNA613834", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Functional Microbial Responses to Alcohol Abstinence in Patients with Alcohol Use Disorder"}, {"acc": "PRJNA615162", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615162", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615842", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}, {"acc": "PRJNA624223", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624223", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624223", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624763", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA624763", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA624763", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA626004", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics Fecal Microbiome Dysbiosis in Parkinsons Disease"}, {"acc": "PRJNA628604", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}, {"acc": "PRJNA629392", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}, {"acc": "PRJNA630999", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA633576", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA634145", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA63661", "pmid": "37169786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA637175", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}, {"acc": "PRJNA637878", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA637878", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA644725", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA644725", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA644725", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA648487", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA648487", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA649316", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Hi-C and metagenomic sequencing of neutropenic patient microbiomes"}, {"acc": "PRJNA650244", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with COVID-19"}, {"acc": "PRJNA658422", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "gut microbiome shifts associated with Henoch-Schonlein purpura"}, {"acc": "PRJNA663646", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "External validation cohorts for CRC-SNP analysis"}, {"acc": "PRJNA664544", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut microbes Metagenome"}, {"acc": "PRJNA665061", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665061", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665854", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS of feces and saliva of pancreatic cancer patients"}, {"acc": "PRJNA672867", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effectiveness of Fecal Microbiota Transplant together with PD-1 blockade in overcoming re…"}, {"acc": "PRJNA678426", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes."}, {"acc": "PRJNA678454", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of stool samples from two South African cohorts"}, {"acc": "PRJNA679346", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA679346", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA679346", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA685797", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The Influence of the gut microbiome on BCG-induced trained immunity"}, {"acc": "PRJNA686265", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-mediated metabolism effects on immunity in rural and urban African populat…"}, {"acc": "PRJNA686821", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics data from human stool microorganism Raw sequence reads"}, {"acc": "PRJNA687536", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA687536", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA687536", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA688164", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688164", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688164", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688274", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA688881", "pmid": "36177457", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Metagenome-wide association study of gut microbiome revealed potential etiology of Pediat…"}, {"acc": "PRJNA692830", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole genome metagenomic analysis of the gut microbiome in HIV-1 infected individuals on…"}, {"acc": "PRJNA695570", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA698773", "pmid": "33973321", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA698773", "pmid": "34715437", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA698986", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA699281", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The microbiome of aging: instability, heterogeneity, and pathogenicity reservoirs in the…"}, {"acc": "PRJNA705895", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA714678", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA714678", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA715615", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural infant gut microbiota"}, {"acc": "PRJNA730640", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA730640", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}, {"acc": "PRJNA742740", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiota of Kidney Stone patients and live-in partners"}, {"acc": "PRJNA750475", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Longitudinal Analysis of Gut Microbiome among healthy women"}, {"acc": "PRJNA752006", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing to Examine the Gut Microbiome in Konzo"}, {"acc": "PRJNA762543", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA762543", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA763503", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Character of microbial engraftment following the fecal microbiota transplantation in pati…"}, {"acc": "PRJNA772518", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA772518", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA772518", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA782810", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Exploring the species-level infant gut bacterial biodiversity through a meta-analysis and…"}, {"acc": "PRJNA788972", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Interactions between human gut microbiome dynamics and sub-optimal health symptoms during…"}, {"acc": "PRJNA832909", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}, {"acc": "PRJNA833139", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gender-specific cross-generational microbial persistence of human gut microbes"}, {"acc": "PRJNA845806", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Trial of Diet in Gestational Diabetes Mellitus: Metabolic Consequences to Mother and Offs…"}, {"acc": "PRJNA975734", "pmid": "37728335", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Disentangling the interactions between nasopharyngeal and gut microbiome and their involv…"}, {"acc": "PRJNA991269", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "lugo-martinez j": {"display": "Lugo-Martinez J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1187541", "pmid": "39753133", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Raw metagenomics sequencing from human hippocampi."}]}, "lui gc": {"display": "Lui GC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA876804", "pmid": "36357381", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Human Metagenomic Metagenome"}]}, "lui o": {"display": "Lui O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA925842", "pmid": "36750571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut bacteria glycan metabolism - Raw sequence reads"}]}, "lui r": {"display": "Lui R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA353598", "pmid": "28539351", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}]}, "lui rn": {"display": "Lui RN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}]}, "luiselli d": {"display": "Luiselli D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "luisi p": {"display": "Luisi P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "luk kc": {"display": "Luk KC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA789273", "pmid": "34960803", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Emergence of a Distinct Picobirnavirus Genotype Circulating in Patients Hospitalized with…"}]}, "lukambagire as": {"display": "Lukambagire AS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73590", "pmid": "38235427", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}]}, "lukassen mv": {"display": "Lukassen MV", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB6456", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB97976", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome maturation during weaning"}, {"acc": "PRJEB97980", "pmid": "42203770", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential impact of doxycycline treatment on antimicrobial resistance genes in the enteri…"}, {"acc": "PRJEB98012", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Creeping Fat"}, {"acc": "PRJEB98069", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Distinct Microbial and Resistome Signatures Differentiate Healthy and Inflamed Ileal Pouc…"}]}, "lum gr": {"display": "Lum GR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1184197", "pmid": "39856104", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Dietary fiber content in clinical ketogenic diets modifies the gut microbiome and seizure…"}]}, "lund o": {"display": "Lund O", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12466", "pmid": "26161690", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Meta-genomic analysis of toilet waste from long distance flights"}, {"acc": "PRJEB12636", "pmid": "26818667", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of P. acnes levels in NGS data from cancer samples"}]}, "lund p": {"display": "Lund P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "lundgren sn": {"display": "Lundgren SN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "29973274", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "30135504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "37138613", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "lundqvist a": {"display": "Lundqvist A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "luo bj": {"display": "Luo BJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA312041", "pmid": "27226242", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human fecal raw sequence reads"}]}, "luo c": {"display": "Luo C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}]}, "luo cy": {"display": "Luo CY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "luo f": {"display": "Luo F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA877820", "pmid": "36289225", "pos": "last", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "luo h": {"display": "Luo H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA427267", "pmid": "29235710", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pearl River metagenomics Raw sequence reads"}]}, "luo j": {"display": "Luo J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1002114", "pmid": "37823665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Direct prediction of carbapenem-resistance for Pseudomonas aeruginosa by whole genome seq…"}, {"acc": "PRJNA1231247", "pmid": "42746483", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "metagenome Raw sequence reads"}]}, "luo r": {"display": "Luo R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA624740", "pmid": "33036549", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of yak faecal microbiota"}]}, "luo s": {"display": "Luo S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA760967", "pmid": "34829986", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Enterococcus faecium Regulates Honey Bee Developmental Genes"}, {"acc": "PRJNA924947", "pmid": "38651859", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}]}, "luo w": {"display": "Luo W", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA356809", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "the gut metagenome of ginat pandas , bears and carnivores Raw sequence reads"}, {"acc": "PRJNA358755", "pmid": "35568757", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "wild and captive gut Raw sequence reads"}, {"acc": "PRJNA774076", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Gut metagenome of bamboo rats"}]}, "luo y": {"display": "Luo Y", "group": false, "n_studies": 20, "studies": [{"acc": "PRJDB28434", "pmid": "37979711", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Macrogenomic data of mice (PRJCA016720)"}, {"acc": "PRJDB39536", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Large-scale single-cell long-read genomics enables high-resolution microbiome profiling (…"}, {"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJNA237795", "pmid": "35583332", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Swine feces Targeted Locus (Loci)"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "luo z": {"display": "Luo Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390667", "pmid": "42071227", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal sample"}]}, "luopajarvi k": {"display": "Luopajärvi K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "luoto r": {"display": "Luoto R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62848", "pmid": "38010080", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, moderate and late preterm infants, probiotic and prebiotic"}]}, "lupatsii m": {"display": "Lupatsii M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1307628", "pmid": "41461922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbial oral-gut translocation in advanced chronic liver disease is linked to exacerbat…"}]}, "luque gg": {"display": "Luque GG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27308", "pmid": "30974084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome metagenome analysis of stool samples from individuals with low and high saliva…"}]}, "lusingu j": {"display": "Lusingu J", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "luty a": {"display": "Luty A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "lux r": {"display": "Lux R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA525517", "pmid": "30975748", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Klebsiella and Providencia notch a tag-team victory in a battle royale of oral bacteria"}]}, "luxton gwg": {"display": "Luxton GWG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1145565", "pmid": "39234544", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "WES of Taiwain Children with Enterovirus (EV) Infections"}]}, "lv b": {"display": "Lv B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1184213", "pmid": "40765991", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The microbiota-dependent effect of physical activity on Crohn's disease"}]}, "lv j": {"display": "Lv J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA869587", "pmid": "36973710", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human viral metagenome Metagenome"}, {"acc": "PRJNA871195", "pmid": "36973710", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Intestinal phage analysis of neonates and children under 5 years old"}]}, "lv q": {"display": "Lv Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA433058", "pmid": "37854337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "lv zh": {"display": "Lv ZH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1428929", "pmid": "42022809", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota and Metabolome Signatures in Preterm Infants with High versus Low Risk for…"}]}, "lwande ow": {"display": "Lwande OW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA795992", "pmid": "35336963", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenome of potential vectors (ticks, mosquitos, etc.)"}]}, "lwin hw": {"display": "Lwin HW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA776332", "pmid": "35280991", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Altered gut microbiome and fecal immune phenotype in early preterm infants with leaky gut"}]}, "ly p": {"display": "Ly P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "lyalina s": {"display": "Lyalina S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA412411", "pmid": "34163067", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}]}, "lyell dj": {"display": "Lyell DJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA288562", "pmid": "26283357", "pos": null, "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}]}, "lyke k": {"display": "Lyke K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "lynch ba": {"display": "Lynch BA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821920", "pmid": "41782637", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mental Health Screening for Babies. What can we learn from infant and caregiver behaviors…"}]}, "lynch kv": {"display": "Lynch KV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "lynch le": {"display": "Lynch LE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA870588", "pmid": "36843227", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic of preterm infants with cholestasis"}]}, "lynch mdj": {"display": "Lynch MDJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA725899", "pmid": "36747007", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of wild rodent colon, cecum and faeces"}]}, "lynch s": {"display": "Lynch S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": null, "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "lynch sv": {"display": "Lynch SV", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB52295", "pmid": "38117587", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Precocious infant gut microbiome reprograms enterocytes and promotes childhood obesity ri…"}, {"acc": "PRJNA737472", "pmid": "35365713", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}, {"acc": "PRJNA737472", "pmid": "39122767", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "lynn dj": {"display": "Lynn DJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807448", "pmid": "40175554", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "lynn ej": {"display": "Lynn EJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "lynn hm": {"display": "Lynn HM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}]}, "lynn ma": {"display": "Lynn MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "lynnerup n": {"display": "Lynnerup N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "lyra c": {"display": "Lyra C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA384716", "pmid": "30250208", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}]}, "lyte jm": {"display": "Lyte JM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB44042", "pmid": "34252569", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Kefir ameliorates specific microbiota-gut-brain axis impairments in a mouse model relevan…"}, {"acc": "PRJNA977671", "pmid": "38320392", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Microbiome analysis of cold related stress in poultry"}]}, "lyte m": {"display": "Lyte M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA977671", "pmid": "38320392", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Microbiome analysis of cold related stress in poultry"}]}, "lyu l": {"display": "Lyu L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51635", "pmid": "36604748", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}, {"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}]}, "lyu z": {"display": "Lyu Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}]}, "m dempsey e": {"display": "M Dempsey E", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB32631", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA322188", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA339914", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA475246", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "m tc": {"display": "M TC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019500", "pmid": "39054413", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}]}, "m waters s": {"display": "M Waters S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8939", "pmid": "28085156", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of Rumen microbiomes reveals the functional isoforms driving microbi…"}]}, "ma a": {"display": "Ma A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": "35365713", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}, {"acc": "PRJNA737472", "pmid": "39122767", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}, {"acc": "PRJNA737472", "pmid": null, "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "ma b": {"display": "Ma B", "group": false, "n_studies": 47, "studies": [{"acc": "PRJDB24652", "pmid": "35876474", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Tea (Camellia sinensis) microbiomes (PRJCA007800)"}, {"acc": "PRJDB29030", "pmid": "38338730", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lettuce Microbiome (PRJCA018891)"}, {"acc": "PRJEB1220", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB22207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJEB32135", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB9576", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA188481", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA221723", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA305507", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA319574", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA322188", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA328899", "pmid": "38172624", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA398089", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA436562", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA485056", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA489090", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA504891", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA510445", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA542703", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA557731", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA633576", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA660305", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism, up-regulated colon inf…"}, {"acc": "PRJNA660966", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism and up-regulated colon…"}, {"acc": "PRJNA715601", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA774819", "pmid": "35695455", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Highly specialized carbohydrate metabolism capability in Bifidobacterium strain associate…"}, {"acc": "PRJNA776332", "pmid": "35280991", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Altered gut microbiome and fecal immune phenotype in early preterm infants with leaky gut"}, {"acc": "PRJNA853174", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "ma c": {"display": "Ma C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA597371", "pmid": "34193290", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal Selective Pressure and Coevolution Project Part 4 human placebo Metagenome"}, {"acc": "PRJNA602729", "pmid": "37905808", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}, {"acc": "PRJNA884688", "pmid": "36778973", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiota and protein source"}]}, "ma h": {"display": "Ma H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}]}, "ma j": {"display": "Ma J", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1052964", "pmid": "40860434", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA433058", "pmid": "37854337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA477424", "pmid": "30619206", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "panda gut metagenome raw sequence reads Raw sequence reads"}, {"acc": "PRJNA798244", "pmid": "36289209", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "HiFi Metagenomic Sequencing Enables Assembly of Accurate Circularized Genomes of Long and…"}]}, "ma l": {"display": "Ma L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1151839", "pmid": "39663251", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Salivary microbiome in burning mouth syndrome"}, {"acc": "PRJNA847006", "pmid": "37049457", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}]}, "ma m": {"display": "Ma M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1052964", "pmid": "40860434", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA838575", "pmid": "40623174", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "ma r": {"display": "Ma R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1166969", "pmid": "39470277", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Multi-Omics Analysis of the Microbial Profile Characteristics Associated with Pulmonary A…"}]}, "ma rcw": {"display": "Ma RCW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}]}, "ma t": {"display": "Ma T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1065277", "pmid": "39268487", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal factors are more capable of influencing the structure of infant gut microbes and…"}]}, "ma w": {"display": "Ma W", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB73551", "pmid": "38912204", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "PICU cases"}, {"acc": "PRJNA1106097", "pmid": "41411653", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Leuconostoc citreum enhances the colonization ability of Lactiplantibacillus plantarum in…"}, {"acc": "PRJNA1390667", "pmid": "42071227", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal sample"}]}, "ma x": {"display": "Ma X", "group": false, "n_studies": 4, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}, {"acc": "PRJNA810575", "pmid": "36419187", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes of maternal and infant faecal samples"}, {"acc": "PRJNA858926", "pmid": "36687649", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}, {"acc": "PRJNA994670", "pmid": "39242698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial community characterization and molecular resistance monitoring in geriatric int…"}]}, "ma y": {"display": "Ma Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1425751", "pmid": "41994268", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome"}]}, "ma yl": {"display": "Ma YL", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB6456", "pmid": "36779183", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA422434", "pmid": "36779183", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA48479", "pmid": "36779183", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "maayan-metzger a": {"display": "Maayan-Metzger A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA610982", "pmid": "33308267", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Determinants of S. aureus carriage in the developing infant nasal microbiome"}]}, "macalady j": {"display": "Macalady J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA907387", "pmid": "37014219", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Acid mine drainage metagenomes"}]}, "macane a": {"display": "Macāne A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42185", "pmid": "34192537", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}]}, "macconnell k": {"display": "MacConnell K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1055141", "pmid": "42336834", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool shallow shotgun sequencing (ANTIBIO)"}]}, "macdonald a": {"display": "MacDonald A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "macdonald dg": {"display": "MacDonald DG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA901256", "pmid": "12117207", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Acrossocheilus fasciatus Raw sequence reads"}]}, "macdonald j": {"display": "MacDonald J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB29237", "pmid": "36909730", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}, {"acc": "PRJEB41463", "pmid": "36909730", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB59728", "pmid": "36909730", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "This study examined pediatric patients undergoing treatment for various cancers and exami…"}]}, "macdonald s": {"display": "MacDonald S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1156595", "pmid": "39827146", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics: a new frontier for routine pathology testing of gastrointestinal pathogens"}, {"acc": "PRJNA1200893", "pmid": "41809988", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}]}, "macdonald t": {"display": "Macdonald T", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB29237", "pmid": "30838178", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}, {"acc": "PRJEB29237", "pmid": "35967843", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}, {"acc": "PRJEB29237", "pmid": "36909730", "pos": "first", "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}, {"acc": "PRJEB41463", "pmid": "35967843", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB41463", "pmid": "36909730", "pos": "first", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB59728", "pmid": "36909730", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "This study examined pediatric patients undergoing treatment for various cancers and exami…"}]}, "macdougall mc": {"display": "MacDougall MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1139690", "pmid": "40340756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "HOME Study fecal samples"}]}, "macgibeny ma": {"display": "MacGibeny MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA642893", "pmid": "33212154", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin microbiome from cutaneous T-cell lymphoma patients and healthy volunteers"}]}, "macgregor a": {"display": "MacGregor A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA957107", "pmid": "38291926", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Imrabiome - Rheumatoid project"}]}, "mach n": {"display": "Mach N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA438436", "pmid": "31270376", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The gut microbiota influence the basal physiological parameters in equine athletes"}, {"acc": "PRJNA438436", "pmid": "33898524", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The gut microbiota influence the basal physiological parameters in equine athletes"}]}, "machado j": {"display": "Machado J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "machiels k": {"display": "Machiels K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA804384", "pmid": "37052201", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Inflammatory bowel disease patients undergoing biological therapy"}, {"acc": "PRJNA851554", "pmid": "34938418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomes of the gut microbiota of CD patients that required resection from a Belgian c…"}]}, "macias-camero a": {"display": "Macías-Camero A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991269", "pmid": "38589361", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "macias-quintero ji": {"display": "Macías-Quintero JI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "maciejewski jp": {"display": "Maciejewski JP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746290", "pmid": "35210415", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Circulating Microbiome in Myeloid Malignancy"}]}, "macinnis bl": {"display": "MacInnis BL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}, {"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "macintyre da": {"display": "MacIntyre DA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "39365058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "mack d": {"display": "Mack D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}]}, "mack dr": {"display": "Mack DR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA818303", "pmid": "36823020", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated metagenomics, metaviromics, and metatranscriptomics reveal colonic virome-bact…"}]}, "mackenzie bw": {"display": "Mackenzie BW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522699", "pmid": "31427729", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}]}, "mackie ri": {"display": "Mackie RI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA237795", "pmid": "35583332", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Swine feces Targeted Locus (Loci)"}]}, "macnaughtan j": {"display": "Macnaughtan J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59994", "pmid": "37892187", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evaluation of an Adapted Semi-Automated DNA Extraction for Human Salivary Shotgun Metagen…"}]}, "macowan m": {"display": "Macowan M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1080233", "pmid": "39214237", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Breathing Together severe wheeze and asthma cohort"}]}, "macpherson aj": {"display": "Macpherson AJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}, {"acc": "PRJEB26596", "pmid": "29051233", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}, {"acc": "PRJEB43581", "pmid": "34737977", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}]}, "macrae a": {"display": "Macrae A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA649484", "pmid": "34389536", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "macsharry j": {"display": "MacSharry J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "40755225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "macwhirter pl": {"display": "Macwhirter PL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA596855", "pmid": "31383310", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Disease surveillance in wild Victorian cacatuids"}]}, "madan j": {"display": "Madan J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB29078", "pmid": "37874156", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA296814", "pmid": "36632065", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA322188", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}]}, "madan jc": {"display": "Madan JC", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1139690", "pmid": "40340756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "HOME Study fecal samples"}, {"acc": "PRJNA296814", "pmid": "29973274", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "30135504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "32968156", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "34215179", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "34454437", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35568730", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35847562", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35906254", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "36777525", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "37138613", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA695570", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA955235", "pmid": "39945545", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}, {"acc": "PRJNA955235", "pmid": "42262087", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}]}, "maddocks s": {"display": "Maddocks S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "maddox c": {"display": "Maddox C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39023", "pmid": "24303043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Treatment of recurrent Clostridioides difficile infection with Fecal Microbiota Transplan…"}, {"acc": "PRJEB39023", "pmid": "24440222", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Treatment of recurrent Clostridioides difficile infection with Fecal Microbiota Transplan…"}]}, "madhup s": {"display": "Madhup S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019500", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}]}, "madi nm": {"display": "Madi NM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA587350", "pmid": "32000795", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "viral metagenomic sequencing in Kuwait"}]}, "madl t": {"display": "Madl T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": "36906612", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "madrid n": {"display": "Madrid N", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB5185", "pmid": "25407519", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysfunctional gut microbiota drives chronic immune activation in HIV-treated individuals"}, {"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "madsen kl": {"display": "Madsen KL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "madsen l": {"display": "Madsen L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64334", "pmid": "38294254", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Multi-omics of host-gut microbiota interactions in healthy and parasitized farmed Atlanti…"}]}, "maecker ht": {"display": "Maecker HT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177009", "pmid": "40738103", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A human milk oligosaccharide alters the microbiome, circulating hormones, cytokines and m…"}]}, "maeda n": {"display": "Maeda N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA30563", "pmid": "18976571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High throughput sequence to detect the presence of a pathogenic microbe in a clinical hum…"}]}, "maeda y": {"display": "Maeda Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "maes p": {"display": "Maes P", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA344863", "pmid": "27666390", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral Metagenomics of fecal samples of fruit bats"}, {"acc": "PRJNA693793", "pmid": "35320047", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BaBel Infant Gut Virome Raw Data"}]}, "magalhaes c": {"display": "Magalhaes C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "magalhaes tr": {"display": "Magalhaes TR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "magana l": {"display": "Magaña L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "26893429", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "26966223", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "27927929", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "27932649", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "28302791", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "magana lc": {"display": "Magaña LC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28818890", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "34673119", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "magaret a": {"display": "Magaret A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28711653", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29281620", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30305383", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "magaret as": {"display": "Magaret AS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28287142", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30383234", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "magdeleine a": {"display": "Magdeleine A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA942254", "pmid": "37650612", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomics of fecal samples from ant-eating mammal species"}]}, "maghini dg": {"display": "Maghini DG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA508395", "pmid": "32042169", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Nanopore long read assembly of the human gut metagenome"}]}, "maghrebi o": {"display": "Maghrebi O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762668", "pmid": "35547149", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal and comparative analysis of Tunisian newborns gut microbiota according to de…"}]}, "magicheva-gupta m": {"display": "Magicheva-Gupta M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "magnabosco c": {"display": "Magnabosco C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "magnan m": {"display": "Magnan M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45090", "pmid": "39665373", "pos": null, "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "ED Gut"}, {"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "magnaye km": {"display": "Magnaye KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": "39122767", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "magoules f": {"display": "Magoules F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36461", "pmid": "32360114", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Laparoscopic Roux-en-Y gastric bypass and sleeve gastrectomy on gut microbiota:…"}]}, "magrini v": {"display": "Magrini V", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA17391", "pmid": "17183312", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut microbiome of lean mouse 1"}, {"acc": "PRJNA17397", "pmid": "17183312", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut microbiome of obese mouse 1"}]}, "magris m": {"display": "Magris M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}]}, "magzal f": {"display": "Magzal F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991320", "pmid": "37794974", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Depression in older adults"}]}, "mahajan p": {"display": "Mahajan P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1148144", "pmid": "40128855", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Biosignatures of late-onset extraintestinal bacterial infections"}]}, "mahalak kk": {"display": "Mahalak KK", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA1160256", "pmid": "39919360", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": "40941064", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1177813", "pmid": "39796584", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "2FL age specific bifidobacterium effect"}, {"acc": "PRJNA1456031", "pmid": "42353547", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of selected contaminants on the human gut microbiome tested ex vivo"}, {"acc": "PRJNA1477482", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbial communities developed in vitro compared to the source inoculums"}, {"acc": "PRJNA893635", "pmid": "36361763", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}, {"acc": "PRJNA893635", "pmid": "37297350", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}, {"acc": "PRJNA961974", "pmid": "38236043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The effects of selected plant extracts on the human gut microbiome"}]}, "mahamadou s": {"display": "Mahamadou S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "mahanta j": {"display": "Mahanta J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945262", "pmid": "37067419", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Gut Microbiome in a mother child paired design"}]}, "maharshak n": {"display": "Maharshak N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA628604", "pmid": "32511695", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}]}, "mahdi ja": {"display": "Mahdi JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "maher dt": {"display": "Maher DT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130617", "pmid": "41505541", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}]}, "mahfuz m": {"display": "Mahfuz M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}]}, "mahidol c": {"display": "Mahidol C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "mahjabeen f": {"display": "Mahjabeen F", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "mahler a": {"display": "Mähler A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}]}, "mahler de sanchez l": {"display": "Mahler de Sanchez L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "mahmood r": {"display": "Mahmood R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "mahmoud n": {"display": "Mahmoud N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "mahmud aa": {"display": "Mahmud AA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "mahmud b": {"display": "Mahmud B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1060349", "pmid": "40175737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Weaning accelerates and transforms within-host adaptation in the infant gut microbiome"}, {"acc": "PRJNA1067813", "pmid": "39731916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C. difficile-associated mouse and human fecal metagenomes"}]}, "mahmud i": {"display": "Mahmud I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "mahnert a": {"display": "Mahnert A", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB37883", "pmid": "36906612", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB77729", "pmid": "39714161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "First-Year Dynamics of the Microbiome in Infants’ Oral and Gastrointestinal Systems"}, {"acc": "PRJNA1108908", "pmid": null, "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1108960", "pmid": null, "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1109334", "pmid": null, "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}]}, "mahony j": {"display": "Mahony J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA422569", "pmid": "30126456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}]}, "mahowald ma": {"display": "Mahowald MA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA17391", "pmid": "17183312", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut microbiome of lean mouse 1"}, {"acc": "PRJNA17397", "pmid": "17183312", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut microbiome of obese mouse 1"}]}, "mahurkar a": {"display": "Mahurkar A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA275349", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA48479", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "mai k": {"display": "Mai K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA412411", "pmid": "34163067", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}]}, "mai v": {"display": "Mai V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46337", "pmid": "28274256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}]}, "maidanou m": {"display": "Maidanou M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "maifeld a": {"display": "Maifeld A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698459", "pmid": "33785752", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}]}, "maiga m": {"display": "Maiga M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "maistrenko om": {"display": "Maistrenko OM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA289586", "pmid": "30747106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}]}, "maity c": {"display": "Maity C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA607004", "pmid": "30264164", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacillus coagulans LBSC Impact on Gut microbiota"}]}, "maixner f": {"display": "Maixner F", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}, {"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "maiz l": {"display": "Máiz L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}]}, "majo fd": {"display": "Majo FD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB51728", "pmid": "39341154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "majors c": {"display": "Majors C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA530252", "pmid": "32631930", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effect of cycled, inhaled tobramycin on the sputum microbiome in cystic fibrosis"}]}, "majta j": {"display": "Majta J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA290380", "pmid": "30894435", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA749919", "pmid": "35589762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An optimized approach to the metagenomic population studies: from sample donation to comm…"}]}, "mak jwy": {"display": "Mak JWY", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}, {"acc": "PRJNA876804", "pmid": "36357381", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Human Metagenomic Metagenome"}]}, "mak sst": {"display": "Mak SST", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA943417", "pmid": "37919016", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Six novel misos"}]}, "mak sy": {"display": "Mak SY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "makarewicz o": {"display": "Makarewicz O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA799199", "pmid": "35256725", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Evaluation of microbiome enrichment and host DNA depletion in human vaginal samples using…"}]}, "makaula p": {"display": "Makaula P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1211045", "pmid": "40833797", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Freshwater snail faeces raw sequence reads"}]}, "makhalanyane t": {"display": "Makhalanyane T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "makhalanyane tp": {"display": "Makhalanyane TP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA630822", "pmid": "34732568", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA630822", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}]}, "makhsous n": {"display": "Makhsous N", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA338014", "pmid": "27974546", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28209840", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28254976", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28870221", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29970463", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30305383", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30576430", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30674273", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA907865", "pmid": "37486790", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhinovirus raw sequence reads"}]}, "maklin t": {"display": "Mäklin T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32631", "pmid": "36456554", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "42032281", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB47909", "pmid": "42032281", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "FMT datasets of patients with recurrent Clostridioides difficile infection (rCDI), inflam…"}]}, "makrai l": {"display": "Makrai L", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA591315", "pmid": "32366826", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "raw milk metagenome"}, {"acc": "PRJNA644779", "pmid": "33384459", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "yogurt and kefir seed culture sequencing"}, {"acc": "PRJNA685398", "pmid": "36083885", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Honey bee gut microbiome"}]}, "malago s": {"display": "Malagò S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB121228", "pmid": "38793608", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}, {"acc": "PRJEB121228", "pmid": "41683794", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}]}, "malaivijitnond s": {"display": "Malaivijitnond S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA548968", "pmid": "31652508", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Fecal virome of wild and captive Cynomolgus macaques (Macaca fascicularis) in Thailand."}]}, "malamisura b": {"display": "Malamisura B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "malaspinas as": {"display": "Malaspinas AS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "malats n": {"display": "Malats N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "maldarelli f": {"display": "Maldarelli F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "maldonado je": {"display": "Maldonado JE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573108", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Sedimentary DNA from Mubwindi Swamp"}]}, "maldonado ya": {"display": "Maldonado YA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644725", "pmid": "32958861", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}]}, "maldonado-gomez mx": {"display": "Maldonado-Gomez MX", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB6456", "pmid": "30258040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA436562", "pmid": "30258040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}]}, "maleche-obimbo e": {"display": "Maleche-Obimbo E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA635738", "pmid": "33727396", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Breast milk Microbiome/Virome of HIV+ Kenyan Women is Not Altered by Immunosuppression"}]}, "malerba g": {"display": "Malerba G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB121228", "pmid": "41683794", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}, {"acc": "PRJEB67641", "pmid": "38709303", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental Plaque Microbiota Sequence Counts for Microbial Profiling and Resistance Genes Det…"}]}, "maley cc": {"display": "Maley CC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "malfavon m": {"display": "Malfavon M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}]}, "malfertheiner p": {"display": "Malfertheiner P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}]}, "malhi rs": {"display": "Malhi RS", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}, {"acc": "PRJNA657304", "pmid": "33542301", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun Sequencing of Dog Coprolites"}]}, "malhotra-kumar s": {"display": "Malhotra-Kumar S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685914", "pmid": "33854066", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiota-based markers predictive of development of Clostridioides difficile infection"}]}, "maliki r": {"display": "Maliki R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "malinauskas j": {"display": "Malinauskas J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "malka g": {"display": "Malka G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "malke jc": {"display": "Malke JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "mallard de la varende al": {"display": "Mallard de La Varende AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "mallawaarachchi s": {"display": "Mallawaarachchi S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32631", "pmid": "42032281", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB47909", "pmid": "42032281", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "FMT datasets of patients with recurrent Clostridioides difficile infection (rCDI), inflam…"}]}, "malleo g": {"display": "Malleo G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB67641", "pmid": "38709303", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental Plaque Microbiota Sequence Counts for Microbial Profiling and Resistance Genes Det…"}]}, "mallon ca": {"display": "Mallon CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "mallott ek": {"display": "Mallott EK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA899808", "pmid": "36543914", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Role of the gut microbiome in lung fibrosis"}]}, "malmstrom h": {"display": "Malmström H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9783", "pmid": "26351665", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing Chalcolithic human remains from El Portalón, Spain"}]}, "maloum mn": {"display": "Maloum MN", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46788", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB86954", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Integrating Metagenomics for Helminth Detection"}, {"acc": "PRJNA48479", "pmid": "41358671", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "maloy m": {"display": "Maloy M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "malsom j": {"display": "Malsom J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "maltez f": {"display": "Maltez F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "mami team": {"display": "MAMI team", "group": true, "n_studies": 1, "studies": [{"acc": "PRJNA1227883", "pmid": "31053102", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}]}, "mammadli m": {"display": "Mammadli M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}]}, "mammel mk": {"display": "Mammel MK", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA336518", "pmid": "29954907", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA336518", "pmid": "29954914", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA336518", "pmid": "35023776", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA336518", "pmid": "35616377", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA490509", "pmid": "26823589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Raw sequence reads of multiple foodborne viruses from outbreaks or sporatic cased in US"}]}, "mampunza s": {"display": "Mampunza S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188190", "pmid": "37113001", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two…"}]}, "man wh": {"display": "Man WH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA555020", "pmid": "31676793", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}]}, "manara s": {"display": "Manara S", "group": false, "n_studies": 17, "studies": [{"acc": "PRJEB15371", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB6456", "pmid": "37116481", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB74322", "pmid": "38870906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJNA231909", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "30661755", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "28144631", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}, {"acc": "PRJNA48479", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA504891", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "32427907", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "manary m": {"display": "Manary M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9818", "pmid": "26351661", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The gut DNA viromes of Malawian twins discordant for severe acute undernutrition"}]}, "manary mj": {"display": "Manary MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "32351922", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "33553097", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "mancabelli l": {"display": "Mancabelli L", "group": false, "n_studies": 243, "studies": [{"acc": "PRJDB4176", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJDB4525", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics of fecal bacterial consortium inhabiting healthy Asian children"}, {"acc": "PRJEB10878", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB11419", "pmid": "33005310", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJEB11419", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJEB11532", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}, {"acc": "PRJEB1220", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB1220", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB1220", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB14935", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Term and preterm shotgun samples"}, {"acc": "PRJEB15257", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB15371", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB15633", "pmid": "33005310", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJEB1690", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB17784", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The fecal microbiota in L-DOPA naive PD patients"}, {"acc": "PRJEB1786", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB18755", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Connections between the gut microbiome and gestational diabetes mellitus"}, {"acc": "PRJEB19090", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}, {"acc": "PRJEB20800", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut resistome modulates resilience and recovery of gut microbiota after broad-spectrum an…"}, {"acc": "PRJEB21528", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB21528", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB23662", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A novel affordable reagent for room temperature storage and transport of fecal samples fo…"}, {"acc": "PRJEB24006", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24557", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Alterations of the intestinal microbiome in patients with retinal artery occlusion"}, {"acc": "PRJEB24771", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB25514", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A cross-sectional study of compositional and functional profiles of gut microbiota in Sar…"}, {"acc": "PRJEB26795", "pmid": "38441032", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB27005", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27005", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27005", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27928", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB27928", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB28338", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Influence of travel on the gut microbiome of cricketers"}, {"acc": "PRJEB28687", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "U.S. immigration westernizes the human gut microbiome"}, {"acc": "PRJEB28687", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "U.S. immigration westernizes the human gut microbiome"}, {"acc": "PRJEB29052", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29052", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29127", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB29127", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB30834", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30834", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30834", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30924", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Comparative analysis of amplicon and metagenomic sequencing methods reveals key features…"}, {"acc": "PRJEB32135", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32631", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "39287373", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB32794", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Distinct microbiome composition and metabolome exists across subgroups of elite Irish ath…"}, {"acc": "PRJEB32794", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Distinct microbiome composition and metabolome exists across subgroups of elite Irish ath…"}, {"acc": "PRJEB33013", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB33098", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB33098", "pmid": "38441032", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB35615", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Associations between the intestinal microbiome and the complement system in age-related m…"}, {"acc": "PRJEB36820", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB37731", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB38528", "pmid": "38441032", "pos": "first", "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB38528", "pmid": "39287373", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB39610", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39610", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39610", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39813", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenomic study of the oral (saliva) and Gut (stool) microbiome in subjects with Croh…"}, {"acc": "PRJEB41102", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB41102", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB41463", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB42013", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Non-invasive, robust and specific fecal microbiota-based screening for the early detectio…"}, {"acc": "PRJEB42363", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB42363", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB4336", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB44737", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB44737", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB46788", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB46788", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB6070", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6070", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6070", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6092", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "metagenome fecal microbiota, Ilumina seq reads of 12 individuals at 2 timepoints"}, {"acc": "PRJEB6456", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6997", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut and Oral Microbiome Dysbiosis in Rheumatoid Arthritis"}, {"acc": "PRJEB7774", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB7774", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB7774", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB8094", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB8347", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJEB9150", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbial succession follows acute secretory diarrhea in humans"}, {"acc": "PRJEB9150", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbial succession follows acute secretory diarrhea in humans"}, {"acc": "PRJEB9576", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA1046438", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA1046438", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA188481", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA215106", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA221723", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA231909", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA268964", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA275349", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA278393", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA278393", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA287207", "pmid": "26231653", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA289586", "pmid": "38441032", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA290380", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA297252", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal microbiota dynamics in hospitalized patients"}, {"acc": "PRJNA299502", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA301903", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA305507", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA305507", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA307231", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA317435", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "ImMicroDyn"}, {"acc": "PRJNA319574", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA320015", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Technical validation of ethanol fixation on stool canine and infant metagenomes"}, {"acc": "PRJNA321218", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA321218", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA322188", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA324129", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human fecal microbiome before and after consumption of AH1206 - Raw sequence reads"}, {"acc": "PRJNA324672", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA327106", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA331138", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of Italian metagenome"}, {"acc": "PRJNA336518", "pmid": "36123315", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA339012", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics analysis of donor and recepient samples from fecal transplant for Recurrent…"}, {"acc": "PRJNA339914", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA340216", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota and metagenomic diversity of omnivore, vegetarian and vegan healthy subjec…"}, {"acc": "PRJNA345144", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA360177", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA360177", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA362284", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA371647", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Raw sequence reads"}, {"acc": "PRJNA373879", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Healthy human fecal metagenomes variably reactivate Irinotecan active metabolite"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379741", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "MECFS metagenomics"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}, {"acc": "PRJNA380118", "pmid": "38441032", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA382011", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics-Guided Pathogen Discovery in Travelers' Diarrhea"}, {"acc": "PRJNA384716", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA386422", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA386422", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA386422", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA389927", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Viral and Bacterial Communities of Colorectal Cancer"}, {"acc": "PRJNA390646", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA392180", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "38441032", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA396794", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA397219", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA400072", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA400072", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA400072", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA401385", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA401385", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA401385", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA412411", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA413160", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenome data from infant stools samples raw sequence reads"}, {"acc": "PRJNA413162", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenome data from infant (PD and ProD) stools samples raw sequence reads"}, {"acc": "PRJNA414479", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Total lipopolysaccharide from the human gut microbiome silences toll-like receptor signal…"}, {"acc": "PRJNA417343", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y5 Cohort)"}, {"acc": "PRJNA418941", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota functionality of healthy controls and individuals with kidney stones"}, {"acc": "PRJNA421881", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA422434", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422569", "pmid": "30126456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA428202", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "healthy human gut metagenomics"}, {"acc": "PRJNA431482", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA431482", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA433459", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "gut metagenome Metagenome"}, {"acc": "PRJNA436562", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA438847", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA438847", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA438847", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA445968", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA449784", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA449784", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA472785", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Gut Microbiome Metagenomic Sequencing"}, {"acc": "PRJNA473126", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA482729", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of native and acetylated high amylose maize starch on fecal pH, short chain fatty…"}, {"acc": "PRJNA485056", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA486782", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486795", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Modification of gut microbiota-bile acid-intestinal FXR signaling leads to the clinical b…"}, {"acc": "PRJNA487305", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Effects of non-nutritive sweeteners on the composition of the human gut microbiome"}, {"acc": "PRJNA489090", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489693", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA489693", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA492716", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA497734", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA499081", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}, {"acc": "PRJNA503909", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA503909", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA509512", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiota changes are associated with acquisition of antibiotic resistant genes among in…"}, {"acc": "PRJNA517801", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS_Liver_disease"}, {"acc": "PRJNA518912", "pmid": "36123315", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA521587", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521587", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521878", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA521878", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA527208", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA527208", "pmid": "38441032", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA527208", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA529124", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529230", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "n of 1 study: Fecal Microbiota Transplantation in Multiple Sclerosis"}, {"acc": "PRJNA531203", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531203", "pmid": "38441032", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531203", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531316", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "CARBEPAD"}, {"acc": "PRJNA532310", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut metagenome"}, {"acc": "PRJNA532538", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome of the gut microbiota in multiple system atrophy patients"}, {"acc": "PRJNA542703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA544527", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA547591", "pmid": "36177457", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547591", "pmid": "38441032", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547591", "pmid": "39287373", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547717", "pmid": "36123315", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "human oral metagenome Raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA553191", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA553191", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA553191", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA555020", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA557731", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA562600", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Multi-omic analysis of Clostridioides difficile infection and response to therapy in pedi…"}, {"acc": "PRJNA562766", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA573963", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut Microbiome of Elderly Adults with Advanced Dementia"}, {"acc": "PRJNA588513", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA588513", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA588513", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA589622", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Underfeeding and oral vancomycin perturb the human gut microbiome and impair nutrient abs…"}, {"acc": "PRJNA589622", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Underfeeding and oral vancomycin perturb the human gut microbiome and impair nutrient abs…"}, {"acc": "PRJNA589866", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA594393", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to FOS intake"}, {"acc": "PRJNA594610", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to PDX intake"}, {"acc": "PRJNA594613", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to FOS intake followed by PDX intake"}, {"acc": "PRJNA594620", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to PDX intake followed by FOS intake"}, {"acc": "PRJNA597839", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota, visceral fat and sleeve gastrectomy"}, {"acc": "PRJNA598446", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A Novel Index for Predicting Health Status Using Species-level Gut Microbiome Profiling"}, {"acc": "PRJNA606198", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Comparison of methods to collect fecal samples for microbiome studies using whole-genome…"}, {"acc": "PRJNA613834", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Functional Microbial Responses to Alcohol Abstinence in Patients with Alcohol Use Disorder"}, {"acc": "PRJNA615162", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615162", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615842", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}, {"acc": "PRJNA624223", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624223", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624223", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624763", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA624763", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA624763", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA626004", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics Fecal Microbiome Dysbiosis in Parkinsons Disease"}, {"acc": "PRJNA628604", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}, {"acc": "PRJNA629392", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}, {"acc": "PRJNA630999", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA633576", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA634145", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA63661", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA637175", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}, {"acc": "PRJNA637878", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA637878", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA644725", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA644725", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA644725", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA648487", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA648487", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA649316", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Hi-C and metagenomic sequencing of neutropenic patient microbiomes"}, {"acc": "PRJNA650244", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with COVID-19"}, {"acc": "PRJNA658422", "pmid": "38441032", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "gut microbiome shifts associated with Henoch-Schonlein purpura"}, {"acc": "PRJNA663646", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "External validation cohorts for CRC-SNP analysis"}, {"acc": "PRJNA664544", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut microbes Metagenome"}, {"acc": "PRJNA665061", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665061", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665854", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS of feces and saliva of pancreatic cancer patients"}, {"acc": "PRJNA672867", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effectiveness of Fecal Microbiota Transplant together with PD-1 blockade in overcoming re…"}, {"acc": "PRJNA678426", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes."}, {"acc": "PRJNA678454", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of stool samples from two South African cohorts"}, {"acc": "PRJNA679346", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA679346", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA679346", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA685797", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The Influence of the gut microbiome on BCG-induced trained immunity"}, {"acc": "PRJNA686265", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-mediated metabolism effects on immunity in rural and urban African populat…"}, {"acc": "PRJNA686821", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics data from human stool microorganism Raw sequence reads"}, {"acc": "PRJNA687536", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA687536", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA687536", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA688164", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688164", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688164", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688274", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA688881", "pmid": "36177457", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Metagenome-wide association study of gut microbiome revealed potential etiology of Pediat…"}, {"acc": "PRJNA692830", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole genome metagenomic analysis of the gut microbiome in HIV-1 infected individuals on…"}, {"acc": "PRJNA695570", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "38441032", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA698773", "pmid": "33973321", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA698986", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA699281", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The microbiome of aging: instability, heterogeneity, and pathogenicity reservoirs in the…"}, {"acc": "PRJNA705895", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA714678", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA714678", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA715615", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural infant gut microbiota"}, {"acc": "PRJNA730640", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA730640", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}, {"acc": "PRJNA742740", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiota of Kidney Stone patients and live-in partners"}, {"acc": "PRJNA750475", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Longitudinal Analysis of Gut Microbiome among healthy women"}, {"acc": "PRJNA752006", "pmid": "38441032", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing to Examine the Gut Microbiome in Konzo"}, {"acc": "PRJNA762543", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA762543", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA763503", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Character of microbial engraftment following the fecal microbiota transplantation in pati…"}, {"acc": "PRJNA772518", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA772518", "pmid": "38441032", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA772518", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA782810", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Exploring the species-level infant gut bacterial biodiversity through a meta-analysis and…"}, {"acc": "PRJNA788972", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Interactions between human gut microbiome dynamics and sub-optimal health symptoms during…"}, {"acc": "PRJNA832909", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}, {"acc": "PRJNA833139", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gender-specific cross-generational microbial persistence of human gut microbes"}, {"acc": "PRJNA845806", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Trial of Diet in Gestational Diabetes Mellitus: Metabolic Consequences to Mother and Offs…"}, {"acc": "PRJNA975734", "pmid": "37728335", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Disentangling the interactions between nasopharyngeal and gut microbiome and their involv…"}, {"acc": "PRJNA991269", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "mancuso cp": {"display": "Mancuso CP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1052084", "pmid": "38260404", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intraspecies dynamics underlie the apparent stability of two important skin microbiome sp…"}, {"acc": "PRJNA1052084", "pmid": "40315837", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intraspecies dynamics underlie the apparent stability of two important skin microbiome sp…"}]}, "mandal r": {"display": "Mandal R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "mandal s": {"display": "Mandal S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29078", "pmid": "30813950", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}]}, "mandelbrot l": {"display": "Mandelbrot L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB77434", "pmid": "37271782", "pos": null, "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Vaginal Microbiota Dynamics in Pregnancy"}]}, "mander ik": {"display": "Mander IK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "mandhane p": {"display": "Mandhane P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA838575", "pmid": "40623174", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "mandhane pj": {"display": "Mandhane PJ", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}, {"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "37644001", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "42337243", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "mandomando i": {"display": "Mandomando I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "manen c": {"display": "Manen C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41240", "pmid": "33434506", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Heterogeneous hunter-gatherer and steppe-related ancestries in Late Neolithic and Bell Be…"}]}, "manenzhe ri": {"display": "Manenzhe RI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37312", "pmid": "33072693", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "The utility of shotgun metagenomics to investigate the carriage of, and longitudinal chan…"}]}, "manga nm": {"display": "Manga NM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1079728", "pmid": "38655084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Next-generation sequencing survey of acute febrile illness in Senegal (2020-2022)"}]}, "manges ar": {"display": "Manges AR", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB51728", "pmid": "39341154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJNA1092681", "pmid": "38696336", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Validation of an automated, end-to-end metagenomic sequencing assay for agnostic detectio…"}, {"acc": "PRJNA297252", "pmid": "26975510", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Intestinal microbiota dynamics in hospitalized patients"}]}, "manghi p": {"display": "Manghi P", "group": false, "n_studies": 19, "studies": [{"acc": "PRJEB15371", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB63351", "pmid": "38104504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neuroblastoma is associated with alterations in gut microbiome composition subsequent to…"}, {"acc": "PRJEB6456", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA231909", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "30661755", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}, {"acc": "PRJNA48479", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA504891", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "32427907", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}]}, "manghina v": {"display": "Manghina V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB19090", "pmid": "27671352", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}]}, "mangifesta m": {"display": "Mangifesta M", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA287207", "pmid": "26231653", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}, {"acc": "PRJNA422569", "pmid": "30126456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}]}, "mangochi h": {"display": "Mangochi H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63570", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Klebsiella_transmission_and_immunity_on_Chatinkha_nursery__Neo_TRACK_"}]}, "mangoni m": {"display": "Mangoni M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "manichanh c": {"display": "Manichanh C", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA1146994", "pmid": "38556088", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Personal traits, lifestyle decisions, and geography shape our dietary intake and conseque…"}, {"acc": "PRJNA1171764", "pmid": "40524271", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut metagenome of IBD patients and healthy controls"}, {"acc": "PRJNA851554", "pmid": "34938418", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomes of the gut microbiota of CD patients that required resection from a Belgian c…"}]}, "maninger n": {"display": "Maninger N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "21779173", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "manios y": {"display": "Manios Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA798191", "pmid": "36038938", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bamboo microbiota study in infants"}]}, "manjankattil s": {"display": "Manjankattil S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1252780", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Effect of anitbiotic alternatives on cecal microbiome of Salmonella Heidelberg-challenged…"}]}, "manjon i": {"display": "Manjón I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1171764", "pmid": "40524271", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut metagenome of IBD patients and healthy controls"}]}, "manjurano a": {"display": "Manjurano A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49206", "pmid": "28839072", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}, {"acc": "PRJEB49206", "pmid": "30118385", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}]}, "mankowski rt": {"display": "Mankowski RT", "group": false, "n_studies": 10, "studies": [{"acc": "PRJEB14964", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Maternal Secretor Status and Microbiota Composition"}, {"acc": "PRJEB27914", "pmid": "41751912", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Six-week endurance exercise alters gut metagenome that is not reflected in systemic metab…"}, {"acc": "PRJEB29078", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA307231", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA32089", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}, {"acc": "PRJNA322188", "pmid": "41751912", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA445932", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA541981", "pmid": "41751912", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome in melanoma patients"}, {"acc": "PRJNA565546", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "fecal sample Raw sequence reads"}, {"acc": "PRJNA763023", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Dysbiosis of human gut microbiome in young-onset colorectal cancer"}]}, "mann ae": {"display": "Mann AE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445215", "pmid": "29959351", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "manning sd": {"display": "Manning SD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA660443", "pmid": "34785751", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the human gut during enteric infection"}]}, "mano h": {"display": "Mano H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "manoil d": {"display": "Manoil D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26080", "pmid": "30356779", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Microbiota of infected dental roots indentified by 16S rRNA gene amplicon sequencing"}]}, "manonai j": {"display": "Manonai J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA966136", "pmid": "38548910", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Vaginal microbiome in women with breast cancer after receiving AI"}]}, "manrique p": {"display": "Manrique P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA499081", "pmid": "33794724", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}]}, "mansano do nascimento g": {"display": "Mansano do Nascimento G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA613851", "pmid": "38091183", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "INVESTIGATION OF THE BACTERIAL AND VIRAL DIVERSITY OF DIDELPHID OPOSSUMS FROM BRAZILIAN F…"}]}, "mansinho k": {"display": "Mansinho K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "manu v": {"display": "Manu V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019500", "pmid": "39054413", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}]}, "manuel m": {"display": "Manuel M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "manuguerra j-c": {"display": "Manuguerra J-C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1004259", "pmid": "38047654", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic and Amplicon-based Nanopore Sequencing of French Human Monkeypox direct from…"}]}, "manus mb": {"display": "Manus MB", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "manzanares villanueva k": {"display": "Manzanares Villanueva K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA834762", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "38427700", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA837236", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "38427700", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA912682", "pmid": "38272215", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "38427700", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "39727415", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}]}, "manzano m": {"display": "Manzano M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "manzano-santana j": {"display": "Manzano-Santana J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}]}, "mao f": {"display": "Mao F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA750571", "pmid": "35306253", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Resistome in sewage surviellance"}]}, "mao m": {"display": "Mao M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "mao rp": {"display": "Mao RP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA778020", "pmid": "35089209", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Clinical metagenomic sequencing for rapid diagnosis of Neonatal meningitis caused by Urea…"}]}, "mao s": {"display": "Mao S", "group": false, "n_studies": 17, "studies": [{"acc": "PRJEB6456", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA273761", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA384716", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA473126", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA63661", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA657455", "pmid": "34118976", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}]}, "mao y": {"display": "Mao Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1148079", "pmid": "39756219", "pos": "first", "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "NGS metagenomic libraries with or without CRISPR-Cas9 modification for ARG enrichment"}]}, "mappes t": {"display": "Mappes T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA613381", "pmid": "32968071", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut…"}]}, "maqsood r": {"display": "Maqsood R", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1045584", "pmid": "39185682", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of SARS-CoV-2 in stool sample from women living with HIV and HIV-negative women an…"}, {"acc": "PRJNA1070654", "pmid": "38712930", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Seasonality of Respiratory, Enteric and Urinary Viruses in Wastewater"}, {"acc": "PRJNA1090887", "pmid": "39053521", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human adenovirus outbreak at a university campus monitored by wastewater and clinical sur…"}, {"acc": "PRJNA635738", "pmid": "33727396", "pos": "first", "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Breast milk Microbiome/Virome of HIV+ Kenyan Women is Not Altered by Immunosuppression"}]}, "maranas c": {"display": "Maranas C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "marangon n": {"display": "Marangon N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43505", "pmid": "34535959", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut barrier and microbiota changes with glycine and branched chain amino acids supplement…"}]}, "marano rbm": {"display": "Marano RBM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA661164", "pmid": "33904706", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Treated Wastewater and Soil Meta-genomic Samples"}]}, "marasco r": {"display": "Marasco R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA781406", "pmid": "35444202", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Vanishing Glaciers Project"}]}, "marbouty m": {"display": "Marbouty M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "marcelis t": {"display": "Marcelis T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA804384", "pmid": "37052201", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Inflammatory bowel disease patients undergoing biological therapy"}]}, "marchesi jr": {"display": "Marchesi JR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB60914", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Roles of gut microbiota-mediated nutrient competition and metabolite inhibition in the in…"}, {"acc": "PRJNA473348", "pmid": "36217535", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effect of bariatric surgery on the faecal metagenome"}]}, "marchi p": {"display": "Marchi P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA300541", "pmid": "42312244", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "marciniak s": {"display": "Marciniak S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA348754", "pmid": "27939314", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}]}, "marcos-zambrano lj": {"display": "Marcos-Zambrano LJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "marcotte b": {"display": "Marcotte B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "marcq i": {"display": "Marcq I", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1104421", "pmid": "39078043", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Serum Bile Acids profiles are altered without change of the Gut Microbiota composition fo…"}, {"acc": "PRJNA1111312", "pmid": "39895875", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun metagenomics reveals Bacteroides stercoris as a fecal biomarker depleted in late-…"}]}, "marcsik a": {"display": "Marcsik A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "mardinoglu a": {"display": "Mardinoglu A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1307628", "pmid": "41461922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbial oral-gut translocation in advanced chronic liver disease is linked to exacerbat…"}]}, "mardis er": {"display": "Mardis ER", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA17391", "pmid": "17183312", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut microbiome of lean mouse 1"}, {"acc": "PRJNA17397", "pmid": "17183312", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut microbiome of obese mouse 1"}]}, "marenholz i": {"display": "Marenholz I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "mareschal j": {"display": "Mareschal J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB43505", "pmid": "34535959", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut barrier and microbiota changes with glycine and branched chain amino acids supplement…"}, {"acc": "PRJEB43581", "pmid": "34737977", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}]}, "marette a": {"display": "Marette A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "margaryan a": {"display": "Margaryan A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "margiotta f": {"display": "Margiotta F", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "margolis et": {"display": "Margolis ET", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "margolles a": {"display": "Margolles A", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA473126", "pmid": "34064844", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA698773", "pmid": "33973321", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA698773", "pmid": "34715437", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "margossian sp": {"display": "Margossian SP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA787952", "pmid": "35239511", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}]}, "mariadassou m": {"display": "Mariadassou M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46489", "pmid": "35848130", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In situ characterization of the genomic content of viruses of methanogenic archaea in ana…"}]}, "marimuthu k": {"display": "Marimuthu K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA750571", "pmid": "35306253", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Resistome in sewage surviellance"}]}, "marin-reyes l": {"display": "Marin-Reyes L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}]}, "marina a": {"display": "Marina A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB74322", "pmid": "40603287", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJNA1227883", "pmid": "40603287", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}]}, "marine r": {"display": "Marine R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27932649", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "28302791", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "marine rl": {"display": "Marine RL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28818890", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "34673119", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "mariotti v": {"display": "Mariotti V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "marissen j": {"display": "Marißen J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "maritsch k": {"display": "Maritsch K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1033532", "pmid": "38014294", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Evaluating the impact of pharmaceuticals on the human gut microbiome Raw sequence reads"}]}, "maritz jm": {"display": "Maritz JM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}, {"acc": "PRJNA961698", "pmid": "37610205", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Very Early Life Microbiome and Metabolome Correlates with Primary Vaccination Variability…"}]}, "markey ka": {"display": "Markey KA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "markiewicz e": {"display": "Markiewicz E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1236379", "pmid": "40886152", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Infant BBB"}]}, "markkanen m": {"display": "Markkanen M", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA301903", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA396794", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA532310", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut metagenome"}]}, "marko l": {"display": "Markó L", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}, {"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}, {"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "marko m": {"display": "Marko M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1463324", "pmid": "41342324", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "VE202 phase 1 stool metagenomes"}]}, "markowitz j": {"display": "Markowitz J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}]}, "marks vt": {"display": "Marks VT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "marlicz w": {"display": "Marlicz W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "maro a": {"display": "Maro A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73590", "pmid": "37111504", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}]}, "marois e": {"display": "Marois E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1297429", "pmid": "40946313", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "16S and RNA sequencing Anopheles gambiae"}]}, "maror ja": {"display": "Maror JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}]}, "maroti g": {"display": "Maróti G", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA591315", "pmid": "32366826", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "raw milk metagenome"}, {"acc": "PRJNA644779", "pmid": "33384459", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "yogurt and kefir seed culture sequencing"}, {"acc": "PRJNA685398", "pmid": "36083885", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Honey bee gut microbiome"}]}, "marotz c": {"display": "Marotz C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29169", "pmid": "31222023", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Establishing microbial composition measurement standards with reference frames"}]}, "marques e": {"display": "Marquès E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA949443", "pmid": "37175775", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Targeted Locus (Loci)"}]}, "marques-bonet t": {"display": "Marquès-Bonet T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32319", "pmid": "32004756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Reads sequenced from a parchment blood stain attributed to the french revolutionary Jean…"}, {"acc": "PRJEB43276", "pmid": "34527890", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Salmonella enterica from a soldier from the 1652-siege of Barcelona (Spain) supports hist…"}]}, "marquet m": {"display": "Marquet M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA799199", "pmid": "35256725", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Evaluation of microbiome enrichment and host DNA depletion in human vaginal samples using…"}]}, "marquez d": {"display": "Marquez D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "marquis sr": {"display": "Marquis SR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA285502", "pmid": "26288277", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiota transplantation (FMT) for ulcerative colitis"}]}, "marroquin-fernandez mb": {"display": "Marroquín-Fernández MB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "mars ra": {"display": "Mars RA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1206145", "pmid": "40898384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of the gut microbiome from infants enrolled in a randomized controlled…"}]}, "mars rat": {"display": "Mars RAT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1222487", "pmid": "42293161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome signatures and reduced Faecalibacterium and Roseburia in infants with earl…"}]}, "marsh rl": {"display": "Marsh RL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA516442", "pmid": "30784601", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Depletion of human DNA from complex clinical samples for metagenomic sequencing"}]}, "marshak a": {"display": "Marshak A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1355224", "pmid": "42037384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human metagenomic samples Metagenome"}]}, "marshall cw": {"display": "Marshall CW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081394", "pmid": "38564694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sinus, throat, and sputum airway microbiology in cystic fibrosis"}]}, "marshall hs": {"display": "Marshall HS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "marshall ipg": {"display": "Marshall IPG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52550", "pmid": "36697964", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of samples suspected of featuring cable bacteria genomic DNA with s…"}]}, "marsit cj": {"display": "Marsit CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "36632065", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "marsland bj": {"display": "Marsland BJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB49383", "pmid": "36163498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm Neonatal Stool Metagenomes"}, {"acc": "PRJNA1080233", "pmid": "39214237", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Breathing Together severe wheeze and asthma cohort"}]}, "marteinsson vt": {"display": "Marteinsson VT", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "martens e": {"display": "Martens E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB127029", "pmid": "26552345", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abun…"}]}, "martens ec": {"display": "Martens EC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA209131", "pmid": "23976882", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacter…"}]}, "martens l": {"display": "Martens L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB19090", "pmid": "27671352", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}]}, "marthaler d": {"display": "Marthaler D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "26966223", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "marticho l": {"display": "Marticho L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1104421", "pmid": "39078043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Serum Bile Acids profiles are altered without change of the Gut Microbiota composition fo…"}]}, "martin a": {"display": "Martin A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1295573", "pmid": "41760690", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The intestinal microbiome of patients with newly diagnosed invasive breast cancer and duc…"}, {"acc": "PRJNA895487", "pmid": "37938270", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "martin al": {"display": "Martin AL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA390646", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA633576", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}]}, "martin bd": {"display": "Martin BD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA510445", "pmid": "31959989", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}]}, "martin c": {"display": "Martin C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60621", "pmid": "37989857", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Is the oral microbiota implicated in taste perception? Investigation of saliva and tongue…"}]}, "martin dp": {"display": "Martin DP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA526942", "pmid": "33137401", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "uncultured crAssphage strain:ZA | isolates :M186D4, C0521BW15,C0526BW15, C0521BD4, and C0…"}]}, "martin fp": {"display": "Martin FP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54707", "pmid": "35990340", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, 2-HMO vs. control formula"}]}, "martin j": {"display": "Martin J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA911205", "pmid": "37726348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Psychosocial adversity experienced in utero and early life is associated with variation i…"}]}, "martin m": {"display": "Martin M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA290380", "pmid": "32728114", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "martin md": {"display": "Martin MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64334", "pmid": "38294254", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Multi-omics of host-gut microbiota interactions in healthy and parasitized farmed Atlanti…"}]}, "martin r": {"display": "Martin R", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB43611", "pmid": "35140493", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in gut microbiota during balneotherapy"}, {"acc": "PRJEB80549", "pmid": "41196055", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterisation of the forehead and armpit skin microbiome of healthy individuals using…"}, {"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "martin s": {"display": "Martin S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22207", "pmid": "31844297", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}]}, "martin vm": {"display": "Martin VM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1445880", "pmid": "42010622", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome samples Gastrointestinal Microbiome and Allergic Proctocolitis coho…"}]}, "martin-antoniano ia": {"display": "Martín-Antoniano IA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991269", "pmid": "38589361", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "martinez arbas s": {"display": "Martínez Arbas S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "martinez c": {"display": "Martinez C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "martinez cg": {"display": "Martinez CG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1297429", "pmid": "40946313", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "16S and RNA sequencing Anopheles gambiae"}]}, "martinez de tejada b": {"display": "Martinez de Tejada B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44108", "pmid": "37065965", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A bone of contention"}]}, "martinez e": {"display": "Martinez E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "martinez gg": {"display": "Martínez GG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39640590", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "martinez jc": {"display": "Martinez JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "martinez jl": {"display": "Martínez JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}]}, "martinez sa": {"display": "Martinez SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "martinez-botas j": {"display": "Martínez-Botas J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB5185", "pmid": "25407519", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysfunctional gut microbiota drives chronic immune activation in HIV-treated individuals"}]}, "martinez-costa c": {"display": "Martínez-Costa C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB74322", "pmid": "38870906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJEB74322", "pmid": "40603287", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJNA1227883", "pmid": "31053102", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}, {"acc": "PRJNA1227883", "pmid": "40603287", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}]}, "martinez-martinez l": {"display": "Martinez-Martinez L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55075", "pmid": "38524774", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Molecular and phylogenetic characterization of the monkeypox outbreak in Andalusia, Spain"}]}, "martinez-riojas lm": {"display": "Martínez-Riojas LM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "martinez-sanz j": {"display": "Martínez-Sanz J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "martinez-valladares m": {"display": "Martínez-Valladares M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "martino d": {"display": "Martino D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1452547", "pmid": "42129350", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Chlorinated Water Effects on Infant Gut Microbiota"}]}, "martins f": {"display": "Martins F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "martins jv": {"display": "Martins JV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "martins s": {"display": "Martins S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "martiny jbh": {"display": "Martiny JBH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA647720", "pmid": "33727392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiome sequencing during a high fiber diet intervention"}]}, "marty fm": {"display": "Marty FM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "marvig rl": {"display": "Marvig RL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA592050", "pmid": "31738985", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Air genomes from surgical room Raw sequence reads"}]}, "marzok a": {"display": "Marzok A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA674643", "pmid": "35474894", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Validation of Coronavirus and Sepsis Probe Sets designed using HUBDesign"}]}, "masarweh c": {"display": "Masarweh C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15633", "pmid": "35406036", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}]}, "maschio a": {"display": "Maschio A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "masclee aam": {"display": "Masclee AAM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26795", "pmid": "30609941", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}]}, "mase c": {"display": "Masè C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}]}, "masetti g": {"display": "Masetti G", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB63351", "pmid": "38104504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neuroblastoma is associated with alterations in gut microbiome composition subsequent to…"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "masetti r": {"display": "Masetti R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA525982", "pmid": "30948795", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transpl…"}, {"acc": "PRJNA914532", "pmid": "36639555", "pos": "last", "reason_code": null, "src": "B", "status": "human_review", "title_short": "Levofloxacin prophylaxis and parenteral nutrition have a detrimental effect on intestinal…"}]}, "masi ac": {"display": "Masi AC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB39610", "pmid": "39216480", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB49383", "pmid": "36163498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm Neonatal Stool Metagenomes"}]}, "masip jr": {"display": "Masip JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "maskell d": {"display": "Maskell D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4647", "pmid": "26197475", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Search Engine for Antimicrobial Resistance: a cloud compatible pipeline and web interface…"}]}, "maskell dj": {"display": "Maskell DJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB12083", "pmid": "28175320", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Metagenomes"}, {"acc": "PRJEB21259", "pmid": "41144256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}]}, "maslen bn": {"display": "Maslen BN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019894", "pmid": "37835668", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Bos taurus breed:Angus Targeted Locus (Loci)"}]}, "maslov ay": {"display": "Maslov AY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "mason a": {"display": "Mason A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "mason ce": {"display": "Mason CE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "mason j": {"display": "Mason J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629517", "pmid": "34145447", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "DFO - beads in situ microcosms Raw sequence reads"}]}, "masood n": {"display": "Masood N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA213036", "pmid": "24072871", "pos": "first", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Cronobacter sakazakii NCIMB 8272 Genome sequencing and assembly"}]}, "massard c": {"display": "Massard C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "massy za": {"display": "Massy ZA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "master eu consortium": {"display": "MASTER EU Consortium", "group": true, "n_studies": 2, "studies": [{"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}]}, "masternak mm": {"display": "Masternak MM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912638", "pmid": "37213047", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MICROBIOME IN AGING GUT AND BRAIN (MiaGB) STUDY"}]}, "masucci l": {"display": "Masucci L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA643802", "pmid": "32859933", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "FMT for diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal…"}]}, "mata m": {"display": "Mata M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1079728", "pmid": "38655084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Next-generation sequencing survey of acute febrile illness in Senegal (2020-2022)"}, {"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "matamoros br": {"display": "Matamoros BR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "38659981", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "mataraso sj": {"display": "Mataraso SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "matharu d": {"display": "Matharu D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52774", "pmid": "36274732", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB52774", "pmid": "37731926", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB70237", "pmid": "38838470", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "mathee k": {"display": "Mathee K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA301903", "pmid": "36748547", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}]}, "mather ae": {"display": "Mather AE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21259", "pmid": "41144256", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}, {"acc": "PRJEB21259", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}]}, "matheron s": {"display": "Matheron S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24843", "pmid": "30714464", "pos": null, "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "The intestinal microbiota predisposes to traveller’s diarrhoea and to the carriage of mul…"}]}, "mathew g": {"display": "Mathew G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "mathi k": {"display": "Mathi K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177009", "pmid": "40738103", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A human milk oligosaccharide alters the microbiome, circulating hormones, cytokines and m…"}]}, "mathieu c": {"display": "Mathieu C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29970463", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "mathiex-fortunet h": {"display": "Mathiex-Fortunet H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43454", "pmid": "35151268", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Long-term diosmectite use does not alter the gut microbiota in adults with chronic diarrh…"}]}, "mathus-vliegen em": {"display": "Mathus-Vliegen EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46777", "pmid": "25836986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Ulcerative Colitis."}]}, "matot e": {"display": "Matot E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "matranga cb": {"display": "Matranga CB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "matrone c": {"display": "Matrone C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA772730", "pmid": "35071138", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The FOUNDATION Study: Hospital Formulation Of B. infantis EVC001 Utilized In The NICU To…"}]}, "matsuda y": {"display": "Matsuda Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA694773", "pmid": "33808480", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Inhibitory effects of breast milk-derived Lactobacillus rhamnosus Probio-M9 on colitis-as…"}]}, "matsuhashi a": {"display": "Matsuhashi A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA692334", "pmid": "34641955", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Recovery of high-quality assembled genomes via single-cell genome-guided binning of metag…"}]}, "matsui t": {"display": "Matsui T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB8125", "pmid": "31549291", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metaviromic analyses on crane fecal samples"}]}, "matsuki t": {"display": "Matsuki T", "group": false, "n_studies": 11, "studies": [{"acc": "PRJDB4176", "pmid": "37188713", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB17632", "pmid": "37188713", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Subspecies in the global human gut microbiome"}, {"acc": "PRJEB6070", "pmid": "37188713", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6456", "pmid": "37188713", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB7774", "pmid": "37188713", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "37188713", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJNA217052", "pmid": "37188713", "pos": "last", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Fiji COMP"}, {"acc": "PRJNA268964", "pmid": "37188713", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "37188713", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA290380", "pmid": "37188713", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA485056", "pmid": "37188713", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}]}, "matsumoto y": {"display": "Matsumoto Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "matsunaga t": {"display": "Matsunaga T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "matsuoka h": {"display": "Matsuoka H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "matsuyama s": {"display": "Matsuyama S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "mattar s": {"display": "Mattar S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "mattarelli p": {"display": "Mattarelli P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA300541", "pmid": "42312244", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "mattavelli e": {"display": "Mattavelli E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA615842", "pmid": "33494335", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}]}, "mattei l": {"display": "Mattei L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893635", "pmid": "37297350", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}]}, "mattei lm": {"display": "Mattei LM", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA451186", "pmid": "30376898", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Placenta Microbiome"}, {"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA872399", "pmid": "36474348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}, {"acc": "PRJNA893635", "pmid": "36361763", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}]}, "matthay ma": {"display": "Matthay MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "matthews e": {"display": "Matthews E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "37230981", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJEB48251", "pmid": "39365058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "matthews ml": {"display": "Matthews ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "matthijnssens j": {"display": "Matthijnssens J", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA1088476", "pmid": "40321713", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Cameroonian blackflies (Diptera: Simuliidae) harbour a plethora of (RNA) viruses"}, {"acc": "PRJNA344863", "pmid": "27666390", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral Metagenomics of fecal samples of fruit bats"}, {"acc": "PRJNA693793", "pmid": "35320047", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "BaBel Infant Gut Virome Raw Data"}, {"acc": "PRJNA705894", "pmid": "33883261", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenomics of Belgian mosquitoes"}, {"acc": "PRJNA804384", "pmid": "37052201", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Inflammatory bowel disease patients undergoing biological therapy"}, {"acc": "PRJNA880624", "pmid": "38742876", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenomics of single Belgian field mosquitoes."}]}, "mattila e": {"display": "Mattila E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA446038", "pmid": "30526683", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}]}, "mattioli m": {"display": "Mattioli M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156457", "pmid": "39731681", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acanthamoeba sequencing"}]}, "matysik s": {"display": "Matysik S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB25727", "pmid": "31138673", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The impact of AXOS intake in overweight individuals with metabolic syndrome."}]}, "mauch t": {"display": "Mauch T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "mauffrey f": {"display": "Mauffrey F", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB47877", "pmid": "37938717", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Challenges in bacterial DNA enrichment and quantification in tissues"}, {"acc": "PRJEB50897", "pmid": "40244028", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental pulp"}, {"acc": "PRJEB57944", "pmid": "40182766", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Diagnosing endocarditis by metagenomics"}]}, "maurice cf": {"display": "Maurice CF", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB46943", "pmid": "42315844", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA284162", "pmid": "42315844", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "STL Infant Twins Microbiome"}, {"acc": "PRJNA385126", "pmid": "42315844", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA387903", "pmid": "42315844", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Intestinal Virome Changes Precede Autoimmunity in Type I Diabetes Susceptible Children"}, {"acc": "PRJNA524703", "pmid": "42315844", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA641593", "pmid": "42315844", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Characterizing the gut DNA and RNA viromes in a population of Chinese residents and visit…"}, {"acc": "PRJNA693793", "pmid": "42315844", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "BaBel Infant Gut Virome Raw Data"}, {"acc": "PRJNA916952", "pmid": "42315844", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Stanford's Outcomes Research in Kids (STORK) Virome"}, {"acc": "PRJNA925842", "pmid": "36750571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut bacteria glycan metabolism - Raw sequence reads"}]}, "mausbach simao r": {"display": "Mausbach Simão R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA613851", "pmid": "38091183", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "INVESTIGATION OF THE BACTERIAL AND VIRAL DIVERSITY OF DIDELPHID OPOSSUMS FROM BRAZILIAN F…"}]}, "maust bs": {"display": "Maust BS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1143669", "pmid": "39707483", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of neonates exposed to HIV"}]}, "maxwell g": {"display": "Maxwell G", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1280936", "pmid": "41405404", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome of Infants in the Neonatal Intensive Care Unit"}, {"acc": "PRJNA417283", "pmid": "41405404", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA988496", "pmid": "41405404", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}]}, "maxwell gl": {"display": "Maxwell GL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA988496", "pmid": "38773685", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}, {"acc": "PRJNA988496", "pmid": "40823537", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}]}, "may j": {"display": "May J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "may p": {"display": "May P", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "28721231", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA289586", "pmid": "27723761", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA379120", "pmid": "30504906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA489090", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA595749", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}, {"acc": "PRJNA782492", "pmid": "40707492", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MiBiPa - Non-invasive microbiome-derived multi-omic biomarkers for the early-stage detect…"}]}, "may u": {"display": "May U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "32427907", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "mayer-blackwell k": {"display": "Mayer-Blackwell K", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB6456", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA475246", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA486782", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA510445", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA630999", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}]}, "mayorga l": {"display": "Mayorga L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1171764", "pmid": "40524271", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut metagenome of IBD patients and healthy controls"}, {"acc": "PRJNA851554", "pmid": "34938418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomes of the gut microbiota of CD patients that required resection from a Belgian c…"}]}, "mays s": {"display": "Mays S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "mazankova k": {"display": "Mazankova K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445932", "pmid": "29297933", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA445932", "pmid": "30121305", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}]}, "mazeas l": {"display": "Mazéas L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46489", "pmid": "35848130", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In situ characterization of the genomic content of viruses of methanogenic archaea in ana…"}]}, "mazel f": {"display": "Mazel F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA992639", "pmid": "38876584", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Novel misos shape distinct microbial ecologies"}]}, "mazhani t": {"display": "Mazhani T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "maziers n": {"display": "Maziers N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}]}, "mazmanian sk": {"display": "Mazmanian SK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB17694", "pmid": "27912057", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Di…"}]}, "mazumdar v": {"display": "Mazumdar V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "mazzoni c": {"display": "Mazzoni C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657818", "pmid": "33377127", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}]}, "mazzulli t": {"display": "Mazzulli T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "20976137", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "mbale e": {"display": "Mbale E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "42311381", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "mbanya d": {"display": "Mbanya D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188190", "pmid": "37113001", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two…"}]}, "mbayiwa k": {"display": "Mbayiwa K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895372", "pmid": "38303501", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiome function and neurodevelopment in Black infants: Vitamin B12 biosynthesis emerg…"}]}, "mbigha donfack kc": {"display": "Mbigha Donfack KC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA880624", "pmid": "38742876", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenomics of single Belgian field mosquitoes."}]}, "mbonde as": {"display": "Mbonde AS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675607", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Biogeochemistry study on Lake Tanganyika in Tanzania"}]}, "mbori-ngacha d": {"display": "Mbori-Ngacha D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA635738", "pmid": "33727396", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Breast milk Microbiome/Virome of HIV+ Kenyan Women is Not Altered by Immunosuppression"}]}, "mboup a": {"display": "Mboup A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1079728", "pmid": "38655084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Next-generation sequencing survey of acute febrile illness in Senegal (2020-2022)"}]}, "mboup s": {"display": "Mboup S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1079728", "pmid": "38655084", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Next-generation sequencing survey of acute febrile illness in Senegal (2020-2022)"}, {"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "mburu m": {"display": "Mburu M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "mbuya mnn": {"display": "Mbuya MNN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "39341154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "mcalister s": {"display": "McAlister S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "mcarthur ag": {"display": "McArthur AG", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA805248", "pmid": "36008821", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Targeted Capture of AMR in Preterm infants after probiotic exposure"}, {"acc": "PRJNA980291", "pmid": "38298144", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Targeted Capture of AMR in children in Botswana"}]}, "mcauliffe fm": {"display": "McAuliffe FM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB48251", "pmid": "37230981", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJEB48251", "pmid": "39365058", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJEB48251", "pmid": "40755225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJNA422569", "pmid": "30126456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}]}, "mcbride aa": {"display": "McBride AA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "mccabe ms": {"display": "McCabe MS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8939", "pmid": "28085156", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of Rumen microbiomes reveals the functional isoforms driving microbi…"}]}, "mccallin s": {"display": "McCallin S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA506325", "pmid": "23102968", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Phages Raw sequence reads"}]}, "mccann a": {"display": "McCann A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA385126", "pmid": "29761040", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA48479", "pmid": "29761040", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "mccann s": {"display": "McCann S", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "mccann sh": {"display": "McCann SH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA695570", "pmid": "34442687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "mccarthy ee": {"display": "McCarthy EE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "mccarthy jj": {"display": "McCarthy JJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1201756", "pmid": "34569067", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome Metagenome"}, {"acc": "PRJNA1201756", "pmid": "37940330", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome Metagenome"}]}, "mccauley k": {"display": "McCauley K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB52295", "pmid": "38117587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Precocious infant gut microbiome reprograms enterocytes and promotes childhood obesity ri…"}]}, "mccauley ke": {"display": "McCauley KE", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJNA1280936", "pmid": "41405404", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome of Infants in the Neonatal Intensive Care Unit"}, {"acc": "PRJNA417283", "pmid": "41405404", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA737472", "pmid": "39122767", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}, {"acc": "PRJNA988496", "pmid": "41405404", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}]}, "mccleery ra": {"display": "McCleery RA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA789782", "pmid": "34970712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of bat coronaviruses from Eswatini"}]}, "mcclure b": {"display": "McClure B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA297869", "pmid": "26614063", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human gastric microbiome metagenome"}]}, "mcclure ea": {"display": "McClure EA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA955235", "pmid": "39945545", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}]}, "mccomb e": {"display": "McComb E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA774819", "pmid": "35695455", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Highly specialized carbohydrate metabolism capability in Bifidobacterium strain associate…"}]}, "mcconkey bj": {"display": "McConkey BJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202388", "pmid": "25028422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "mccormack um": {"display": "McCormack UM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA237795", "pmid": "35583332", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Swine feces Targeted Locus (Loci)"}]}, "mccormick jb": {"display": "McCormick JB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA734860", "pmid": "32258950", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA734860", "pmid": "34633706", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA734860", "pmid": "35477306", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}]}, "mccormick k": {"display": "McCormick K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA451186", "pmid": "30376898", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Placenta Microbiome"}]}, "mccoy kd": {"display": "McCoy KD", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}, {"acc": "PRJEB26596", "pmid": "29051233", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}, {"acc": "PRJNA1055141", "pmid": "42336834", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool shallow shotgun sequencing (ANTIBIO)"}]}, "mccracken c": {"display": "McCracken C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA275349", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA48479", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "mcculloch ja": {"display": "McCulloch JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "mcdaniel l": {"display": "McDaniel L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "mcdaniel mm": {"display": "McDaniel MM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA311208", "pmid": "27406942", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Severe gut microbiota dysbiosis is associated with poor growth in patients with short bow…"}]}, "mcdermott dh": {"display": "McDermott DH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "mcdermott r": {"display": "McDermott R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA503909", "pmid": "33074097", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}]}, "mcdonald d": {"display": "McDonald D", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}, {"acc": "PRJEB20471", "pmid": "20231444", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Forensic identification using skin bacterial communities - keyboard"}, {"acc": "PRJEB20500", "pmid": "20231444", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Forensic identification using skin bacterial communities - mouse"}, {"acc": "PRJNA275349", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA48479", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "mcdonald ir": {"display": "McDonald IR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA431961", "pmid": "39696719", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Geothermal fumarole subsurface microbial communities from Mt. Erebus, Antarctica"}]}, "mcdonald j": {"display": "McDonald J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}]}, "mcdonald jak": {"display": "McDonald JAK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60914", "pmid": null, "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Roles of gut microbiota-mediated nutrient competition and metabolite inhibition in the in…"}]}, "mcdonough mm": {"display": "Mcdonough MM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573108", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Sedimentary DNA from Mubwindi Swamp"}]}, "mcewan jc": {"display": "McEwan JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "mcfarland bc": {"display": "McFarland BC", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB32631", "pmid": "32431894", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA288562", "pmid": "32431894", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}, {"acc": "PRJNA593263", "pmid": "32431894", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Feces metagenome"}]}, "mcgee hs": {"display": "McGee HS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28510", "pmid": "27633952", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diverse virome in kidney transplant patients contains multiple viral subtypes with dist…"}]}, "mcglynn g": {"display": "McGlynn G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "mcgovern dp": {"display": "McGovern DP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB7772", "pmid": "25619688", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}]}, "mcguckin c": {"display": "McGuckin C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA630999", "pmid": "33665175", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}]}, "mchardy ac": {"display": "McHardy AC", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}, {"acc": "PRJNA43253", "pmid": "20363958", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human fecal microbiome"}, {"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "mchugh k": {"display": "McHugh K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "mcintosh ce": {"display": "McIntosh CE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "mciver l": {"display": "McIver L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "mciver lj": {"display": "McIver LJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA398089", "pmid": "35614211", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}]}, "mckee k": {"display": "McKee K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "38782975", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "mckee ks": {"display": "McKee KS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "41265504", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "mckeever er": {"display": "McKeever ER", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "mckenney pt": {"display": "McKenney PT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA259179", "pmid": "25337874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Studies of intestinal microbiome and infection resistance"}]}, "mckinley kl": {"display": "McKinley KL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1095378", "pmid": "39373498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic resistance"}]}, "mckune s": {"display": "McKune S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "33042218", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "mckune sl": {"display": "McKune SL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "32351922", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "33553097", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "33829128", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "mclean ja": {"display": "McLean JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA986525", "pmid": "38441000", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "2'-fucoysllactose treatment of C57BL/6 adult mice fecal metagenomics"}]}, "mclean js": {"display": "McLean JS", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA289925", "pmid": "26701081", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candidatus [Bacteroides] periocalifornicus isolate:12B Genome sequencing and assembly"}, {"acc": "PRJNA398963", "pmid": "30522530", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "oral bacterial species growing in a complex biofilm Raw sequence reads"}, {"acc": "PRJNA525517", "pmid": "30975748", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Klebsiella and Providencia notch a tag-team victory in a battle royale of oral bacteria"}]}, "mclimans cj": {"display": "McLimans CJ", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA301903", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA396794", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA532310", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut metagenome"}]}, "mcmillin m": {"display": "McMillin M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "41118772", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "mcminds r": {"display": "McMinds R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA437202", "pmid": "33117317", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Red Sea coral metagenomes"}]}, "mcmorrow ml": {"display": "McMorrow ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "mcmurdie pj": {"display": "McMurdie PJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA288562", "pmid": "26283357", "pos": null, "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}]}, "mcmurtry v": {"display": "McMurtry V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46337", "pmid": "28274256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}]}, "mcnally a": {"display": "McNally A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32631", "pmid": "36456554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA213036", "pmid": "24072871", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Cronobacter sakazakii NCIMB 8272 Genome sequencing and assembly"}]}, "mcnamara la": {"display": "McNamara LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "mcnamara s": {"display": "McNamara S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA314903", "pmid": "24178246", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Pseudomonas Aeruginosa Early CF Adaptive Changes"}, {"acc": "PRJNA530252", "pmid": "32631930", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effect of cycled, inhaled tobramycin on the sputum microbiome in cystic fibrosis"}]}, "mcnulty np": {"display": "McNulty NP", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB38446", "pmid": "34001614", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiota (16S rDNA sequencing) and microbiome (shotgun sequencing) data of a pig model…"}, {"acc": "PRJEB45356", "pmid": "42014682", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA145005", "pmid": "22030749", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}, {"acc": "PRJNA209131", "pmid": "23976882", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacter…"}]}, "mcparland v": {"display": "McParland V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}]}, "mcquade jl": {"display": "McQuade JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "mcquiston jr": {"display": "McQuiston JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445389", "pmid": "30586509", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Sphingomonas koreensis Genome sequencing and assembly"}]}, "mcrae n": {"display": "McRae N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39640590", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "mcritche s": {"display": "McRitche S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "34454437", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "mcritchie s": {"display": "McRitchie S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA296814", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA695570", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "mcspadden ej": {"display": "McSpadden EJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB102033", "pmid": "41330369", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lantibiotic-producing bacteria impact microbiome resilience and colonization resistance"}]}, "mead kr": {"display": "Mead KR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA946744", "pmid": "39666007", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Homo sapiens metagenomic sequences"}]}, "meade tw": {"display": "Meade TW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35337", "pmid": "11075884", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Analysis of freeze-dried faecal samples collected from individuals between 1974 and 1980"}]}, "meadows j": {"display": "Meadows J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42185", "pmid": "34192537", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}]}, "meagher n": {"display": "Meagher N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28671", "pmid": "34972822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A_novel_nano_iron_supplement__IHAT__to_safely_combact_iron_deficiency_and_anemia"}]}, "mebrahtu a": {"display": "Mebrahtu A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "meda n": {"display": "Meda N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}]}, "medeiros g": {"display": "Medeiros G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA847605", "pmid": "36565815", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosa…"}]}, "medik yb": {"display": "Medik YB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "medina r": {"display": "Medina R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1420872", "pmid": "41027803", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of gut/stool samples Metagenome"}]}, "megnis k": {"display": "Megnis K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62817", "pmid": "38868903", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome encoded purine and amino acid pathways present prospective biomarkers for…"}]}, "megraud f": {"display": "Megraud F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}]}, "mehrotra s": {"display": "Mehrotra S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA297252", "pmid": "26975510", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Intestinal microbiota dynamics in hospitalized patients"}]}, "mehta rs": {"display": "Mehta RS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "mehta s": {"display": "Mehta S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1445932", "pmid": "42669658", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of a complementary feeding intervention on the gut microbiota in 12-18-month- old…"}, {"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "mei x": {"display": "Mei X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA818432", "pmid": "35783441", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Raw sequence reads"}]}, "mei z": {"display": "Mei Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA719915", "pmid": "34465850", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tumor microbiome contributes to an aggressive phenotype in the basal-like subtype of panc…"}]}, "meier t": {"display": "Meier T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}]}, "meiirmanova z": {"display": "Meiirmanova Z", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1217583", "pmid": "40299456", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic predictors of childhood obesity, cross-talk with maternal microflora"}, {"acc": "PRJNA949528", "pmid": "37308527", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}, {"acc": "PRJNA949528", "pmid": "40299456", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}]}, "meijnikman as": {"display": "Meijnikman AS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "mejia nm": {"display": "Mejía NM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB66169", "pmid": "41540446", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient DNA study provides clues to leprosy susceptibility in medieval Europe"}]}, "mejia r": {"display": "Mejia R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "mejia-bautista m": {"display": "Mejía-Bautista M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA268964", "pmid": "27172044", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "27172044", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "mekki h": {"display": "Mekki H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445932", "pmid": "29297933", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA445932", "pmid": "30121305", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}]}, "mekonnen z": {"display": "Mekonnen Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "mekuria z": {"display": "Mekuria Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "41185061", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "melander o": {"display": "Melander O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "melcher m": {"display": "Melcher M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1108908", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1108960", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1109334", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}]}, "melchers wjg": {"display": "Melchers WJG", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA856437", "pmid": "36171433", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cervicovaginal microbial communities and hrHPV infections"}, {"acc": "PRJNA856437", "pmid": "37731597", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cervicovaginal microbial communities and hrHPV infections"}, {"acc": "PRJNA856437", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cervicovaginal microbial communities and hrHPV infections"}, {"acc": "PRJNA888791", "pmid": "36171433", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Longitudinal profiling of the cervicovaginal microbiome"}, {"acc": "PRJNA888791", "pmid": "37731597", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Longitudinal profiling of the cervicovaginal microbiome"}, {"acc": "PRJNA888791", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Longitudinal profiling of the cervicovaginal microbiome"}]}, "melendez d": {"display": "Melendez D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29668933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "melgar s": {"display": "Melgar S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352475", "pmid": "36420990", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "meller h": {"display": "Meller H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}]}, "melles dc": {"display": "Melles DC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA688274", "pmid": "34092249", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Netherland Travelers"}]}, "melnik av": {"display": "Melnik AV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA772730", "pmid": "35071138", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The FOUNDATION Study: Hospital Formulation Of B. infantis EVC001 Utilized In The NICU To…"}]}, "melsaether c": {"display": "Melsaether C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62690", "pmid": "37513505", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, 5-HMO supplemented formula vs. control formula vs. breastfed"}]}, "mende dr": {"display": "Mende DR", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB32631", "pmid": "39866568", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB66728", "pmid": "39866568", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Priority effects, nutrition and HMO-metabolism drive Bifidobacterium longum subspecies dy…"}, {"acc": "PRJEB88622", "pmid": "41785249", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Functional adaptations and metabolic interactions of undescribed Streptococcus and Rothia…"}, {"acc": "PRJNA322188", "pmid": "39866568", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA352475", "pmid": "39866568", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA475246", "pmid": "39866568", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA504891", "pmid": "41986657", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "mendez j": {"display": "Mendez J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "mendoza sp": {"display": "Mendoza SP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "21779173", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "mendoza vf": {"display": "Mendoza VF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "mendoza-revilla j": {"display": "Mendoza-Revilla J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "meng h": {"display": "Meng H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1151839", "pmid": "39663251", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Salivary microbiome in burning mouth syndrome"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "meng hyh": {"display": "Meng HYH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}]}, "meng j": {"display": "Meng J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1218236", "pmid": "40144527", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Analysis of Intragastric Administration of Donkey Milk on Mouse Immunity Using Gut Microb…"}]}, "meng n": {"display": "Meng N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15111", "pmid": "26932197", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}]}, "meng q": {"display": "Meng Q", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "meng y": {"display": "Meng Y", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA356809", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "the gut metagenome of ginat pandas , bears and carnivores Raw sequence reads"}, {"acc": "PRJNA358755", "pmid": "35568757", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "wild and captive gut Raw sequence reads"}, {"acc": "PRJNA774076", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Gut metagenome of bamboo rats"}, {"acc": "PRJNA825364", "pmid": "36045431", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Droplet microfluidic cultivation for bee gut bacteria"}]}, "menges m": {"display": "Menges M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "mengoni c": {"display": "Mengoni C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA504891", "pmid": "32427907", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}]}, "menon r": {"display": "Menon R", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1071720", "pmid": "38572716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FECBUD Study Fecal Metagenomes"}, {"acc": "PRJNA1121316", "pmid": "37060545", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}, {"acc": "PRJNA1121316", "pmid": "39747680", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}, {"acc": "PRJNA1463324", "pmid": "41342324", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "VE202 phase 1 stool metagenomes"}, {"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}, {"acc": "PRJNA946744", "pmid": "39666007", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Homo sapiens metagenomic sequences"}]}, "menon vk": {"display": "Menon VK", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1084251", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tryptophan metabolites in fecal samples from healthy humans"}, {"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "39282326", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1224818", "pmid": "38361816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with n…"}]}, "menozzi e": {"display": "Menozzi E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59994", "pmid": "37892187", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evaluation of an Adapted Semi-Automated DNA Extraction for Human Salivary Shotgun Metagen…"}]}, "mentre f": {"display": "Mentré F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "mera-berriatua l": {"display": "Mera-Berriatua L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991269", "pmid": "38589361", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "mercer em": {"display": "Mercer EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1055141", "pmid": "42336834", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool shallow shotgun sequencing (ANTIBIO)"}]}, "mereddy s": {"display": "Mereddy S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1344450", "pmid": "41261182", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing of Pila globosa and Associated Freshwater Environment"}]}, "meredith lk": {"display": "Meredith LK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "merino-diaz l": {"display": "Merino-Diaz L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55075", "pmid": "38524774", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Molecular and phylogenetic characterization of the monkeypox outbreak in Andalusia, Spain"}]}, "merkevicius a": {"display": "Merkevicius A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "merkyte i": {"display": "Merkyte I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "merle u": {"display": "Merle U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "merlino g": {"display": "Merlino G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "mertelj p": {"display": "Mertelj P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB77729", "pmid": "39714161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "First-Year Dynamics of the Microbiome in Infants’ Oral and Gastrointestinal Systems"}]}, "merten c": {"display": "Merten C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}]}, "meschi t": {"display": "Meschi T", "group": false, "n_studies": 73, "studies": [{"acc": "PRJEB10878", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB1220", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB26795", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB27005", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27928", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB29052", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29127", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB30834", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB33098", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB38528", "pmid": "38441032", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB39610", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB41102", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB46788", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB6070", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB7774", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJNA1046438", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA268964", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA289586", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA290380", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA307231", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA327106", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA345144", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA360177", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA379120", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA380118", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA386422", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA392180", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA397112", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA400072", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA401385", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA422434", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA431482", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA438847", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA445968", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA449784", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA503909", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA521587", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA527208", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA529124", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA531203", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA542703", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA547591", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA549787", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA553191", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA562600", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Multi-omic analysis of Clostridioides difficile infection and response to therapy in pedi…"}, {"acc": "PRJNA588513", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA624223", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624763", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA633576", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA644725", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA658422", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "gut microbiome shifts associated with Henoch-Schonlein purpura"}, {"acc": "PRJNA679346", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA687536", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA688164", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688274", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA695570", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA714678", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA752006", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing to Examine the Gut Microbiome in Konzo"}, {"acc": "PRJNA772518", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA975734", "pmid": "37728335", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Disentangling the interactions between nasopharyngeal and gut microbiome and their involv…"}]}, "meshnick sr": {"display": "Meshnick SR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB10057", "pmid": "26180832", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Variation in the Microbiota of Ixodes ticks with geography, species and sex"}, {"acc": "PRJEB10073", "pmid": "26180832", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Variation in the Microbiota of Ixodes ticks with geography, species and sex illumina"}]}, "meshulam-simon g": {"display": "Meshulam-Simon G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "meslier v": {"display": "Meslier V", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52431", "pmid": "36971547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In Vitro Modelling of Oral Microbial Invasion in the Human Colon"}, {"acc": "PRJEB59994", "pmid": "37892187", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evaluation of an Adapted Semi-Automated DNA Extraction for Human Salivary Shotgun Metagen…"}]}, "mesnage r": {"display": "Mesnage R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}]}, "messa a": {"display": "Messa A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "messaoudene m": {"display": "Messaoudene M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "messaoudi i": {"display": "Messaoudi I", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB5224", "pmid": "38182754", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA546004", "pmid": "31451108", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Maturation of the infant rhesus macaque (Macaca mulatta) gut microbiome and its role in t…"}, {"acc": "PRJNA729051", "pmid": "34158595", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Growth faltering regardless of chronic diarrhea is associated with mucosal immune dysfunc…"}]}, "messias csma": {"display": "Messias CSMA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA649484", "pmid": "34389536", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "messina e": {"display": "Messina E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA158313", "pmid": "23251564", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Iberian lynx fecal Metagenome"}]}, "messina ja": {"display": "Messina JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "messina nl": {"display": "Messina NL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55714", "pmid": "37397142", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analyses of the intestinal microbiome from neonates in the MIS BAIR trial"}, {"acc": "PRJEB55714", "pmid": "41853385", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analyses of the intestinal microbiome from neonates in the MIS BAIR trial"}]}, "messora mr": {"display": "Messora MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA846723", "pmid": "39527605", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of oral administration of Bifidobacterium animalis subsp. lactis HN019 on the tre…"}]}, "meszaros-matwiejuk a": {"display": "Meszaros-Matwiejuk A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "38838470", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "metacardis consortium*": {"display": "MetaCardis Consortium*", "group": true, "n_studies": 1, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}]}, "metahit consortium": {"display": "MetaHIT Consortium", "group": true, "n_studies": 3, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}]}, "metcalf g": {"display": "Metcalf G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1195142", "pmid": "39282326", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}]}, "metcalf ga": {"display": "Metcalf GA", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1195144", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1224818", "pmid": "38361816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with n…"}]}, "metcalf j": {"display": "Metcalf J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}, {"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}]}, "metola l": {"display": "Metola L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819232", "pmid": "35618952", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Integrase Inhibitors on gut and oral microbiome"}]}, "metsky hc": {"display": "Metsky HC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": "first", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}, {"acc": "PRJNA623215", "pmid": "32349121", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing to evaluate massively multiplexed detection with Cas13"}]}, "metspalu m": {"display": "Metspalu M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "metwally a": {"display": "Metwally A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28510", "pmid": "27633952", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diverse virome in kidney transplant patients contains multiple viral subtypes with dist…"}]}, "metzgar d": {"display": "Metzgar D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA80601", "pmid": "23554892", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterization of the nasopharyngeal virome in patients with influenza-like illness of…"}]}, "meumann e": {"display": "Meumann E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "meumann em": {"display": "Meumann EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "mexia r": {"display": "Mexia R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "meydan c": {"display": "Meydan C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "meyer ac": {"display": "Meyer AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573821", "pmid": "32919472", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Whole Meta-genome shotgun sequencing of stool samples from human treated with antibiotics"}]}, "meyer c": {"display": "Meyer C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "meyer cu": {"display": "Meyer CU", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76677", "pmid": "28039159", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota differs between children with Inflammatory Bowel Disease and healthy sibli…"}]}, "meyer j": {"display": "Meyer J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44214", "pmid": "34983654", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in the gut microbiome in colon cancer surgery patients: a pilot observational stu…"}]}, "meyer ja": {"display": "Meyer JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46333", "pmid": "23698366", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "meyer tl": {"display": "Meyer TL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}]}, "meyer tv": {"display": "Meyer TV", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}, {"acc": "PRJNA789273", "pmid": "34960803", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Emergence of a Distinct Picobirnavirus Genotype Circulating in Patients Hospitalized with…"}]}, "meyerson m": {"display": "Meyerson M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "meynier a": {"display": "Meynier A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "meza r": {"display": "Meza R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698223", "pmid": "36470885", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "TD Cusco travelers study"}]}, "mezabrovschi r": {"display": "Mezabrovschi R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59994", "pmid": "37892187", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evaluation of an Adapted Semi-Automated DNA Extraction for Human Salivary Shotgun Metagen…"}]}, "meziani l": {"display": "Meziani L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "meziti a": {"display": "Meziti A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486009", "pmid": "33452027", "pos": "first", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Genome diversity of pathogenic Escherichia coli in Ecuador"}]}, "mezquita l": {"display": "Mezquita L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "mezzache s": {"display": "Mezzache S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA478488", "pmid": "32591010", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Chinese human skin metagenome"}]}, "mi c": {"display": "Mi C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961946", "pmid": "37386612", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Human Genome sequencing and assembly"}]}, "mi n": {"display": "Mi N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}]}, "mi s": {"display": "Mi S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "miao q": {"display": "Miao Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}]}, "micallef c": {"display": "Micallef C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12083", "pmid": "28175320", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Metagenomes"}]}, "michael dr": {"display": "Michael DR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB82926", "pmid": "40431157", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic Supplementation Impacts Gut Microbiota Development in Infants at Risk of Atopy:…"}]}, "michael sf": {"display": "Michael SF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "michaels mg": {"display": "Michaels MG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "michaelsen ty": {"display": "Michaelsen TY", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB48021", "pmid": "35789207", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of anaerobic digester at Fredericia WWTP with short and long read s…"}, {"acc": "PRJEB48692", "pmid": "35789207", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Sequenced reads for ZymoBIOMICS HMW DNA Standard, including reads from Illumina, Nanopore…"}]}, "michalsen a": {"display": "Michalsen A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}]}, "michalski mc": {"display": "Michalski MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "michaud m": {"display": "Michaud M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "michel c": {"display": "Michel C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB43581", "pmid": "34295911", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}, {"acc": "PRJEB44898", "pmid": "34295911", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hyperammonemia syndrome following lung transplantation."}]}, "michelacci v": {"display": "Michelacci V", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB23207", "pmid": "29468143", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic characterization of the human intestinal microbiota in faecal samples from ST…"}, {"acc": "PRJNA1031997", "pmid": "38659981", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "michelin a": {"display": "Michelin A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156457", "pmid": "39731681", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acanthamoeba sequencing"}]}, "michelin av": {"display": "Michelin AV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445389", "pmid": "30586509", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Sphingomonas koreensis Genome sequencing and assembly"}]}, "michelon h": {"display": "Michelon H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1121295", "pmid": "38964511", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FEDEX Study Fecal Metagenomes"}]}, "michoud g": {"display": "Michoud G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA781406", "pmid": "35444202", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Vanishing Glaciers Project"}]}, "mick e": {"display": "Mick E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "micondo kh": {"display": "Micondo KH", "group": false, "n_studies": 16, "studies": [{"acc": "PRJEB12669", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB24771", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB32135", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA287207", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA322188", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA339914", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA473126", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA524703", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA549787", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA557731", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA715615", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural infant gut microbiota"}]}, "midani fs": {"display": "Midani FS", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1403004", "pmid": null, "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "middelbos is": {"display": "Middelbos IS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA49397", "pmid": "20962874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Canine gastrointestinal metagenome"}]}, "midgley cm": {"display": "Midgley CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28369502", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "midoux c": {"display": "Midoux C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46489", "pmid": "35848130", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In situ characterization of the genomic content of viruses of methanogenic archaea in ana…"}]}, "midtvedt t": {"display": "Midtvedt T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29078", "pmid": "30813950", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}]}, "midya v": {"display": "Midya V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39474439", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}, {"acc": "PRJNA975184", "pmid": "39640590", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "mie a": {"display": "Mie A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB84944", "pmid": "40885737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of 56 mother-infant dyads from the ALADDIN birth cohort"}]}, "miettinen s": {"display": "Miettinen S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27325", "pmid": "30326954", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}]}, "mikes j": {"display": "Mikeš J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "miki k": {"display": "Miki K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "mikula m": {"display": "Mikula M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA943135", "pmid": "37577378", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diarrhoeal-associated gut dysbiosis in cancer and inflammatory bowel disease patients i…"}]}, "mikulic n": {"display": "Mikulic N", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52748", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome function and composition in infants from rural Kenya and association with…"}, {"acc": "PRJEB6456", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "milanese a": {"display": "Milanese A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}]}, "milani c": {"display": "Milani C", "group": false, "n_studies": 238, "studies": [{"acc": "PRJDB4176", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJDB4525", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics of fecal bacterial consortium inhabiting healthy Asian children"}, {"acc": "PRJEB10878", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB11419", "pmid": "33005310", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJEB11419", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJEB11532", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}, {"acc": "PRJEB1220", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB1220", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB1220", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "34152069", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB14935", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Term and preterm shotgun samples"}, {"acc": "PRJEB15371", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB15633", "pmid": "33005310", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJEB1690", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB17784", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The fecal microbiota in L-DOPA naive PD patients"}, {"acc": "PRJEB1786", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB18755", "pmid": "36177457", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Connections between the gut microbiome and gestational diabetes mellitus"}, {"acc": "PRJEB19090", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}, {"acc": "PRJEB20800", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut resistome modulates resilience and recovery of gut microbiota after broad-spectrum an…"}, {"acc": "PRJEB21528", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB21528", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB23662", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A novel affordable reagent for room temperature storage and transport of fecal samples fo…"}, {"acc": "PRJEB24006", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24557", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Alterations of the intestinal microbiome in patients with retinal artery occlusion"}, {"acc": "PRJEB24771", "pmid": "34152069", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB25514", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A cross-sectional study of compositional and functional profiles of gut microbiota in Sar…"}, {"acc": "PRJEB26795", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB27005", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27005", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27005", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27928", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB27928", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB28338", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Influence of travel on the gut microbiome of cricketers"}, {"acc": "PRJEB28687", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "U.S. immigration westernizes the human gut microbiome"}, {"acc": "PRJEB28687", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "U.S. immigration westernizes the human gut microbiome"}, {"acc": "PRJEB29052", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29127", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB29127", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB30834", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30834", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30834", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30924", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Comparative analysis of amplicon and metagenomic sequencing methods reveals key features…"}, {"acc": "PRJEB32135", "pmid": "34152069", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32631", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "39287373", "pos": "last", "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB32794", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Distinct microbiome composition and metabolome exists across subgroups of elite Irish ath…"}, {"acc": "PRJEB32794", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Distinct microbiome composition and metabolome exists across subgroups of elite Irish ath…"}, {"acc": "PRJEB33013", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB33098", "pmid": "36177457", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB33098", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB35615", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Associations between the intestinal microbiome and the complement system in age-related m…"}, {"acc": "PRJEB36820", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB37731", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB38528", "pmid": "38441032", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB38528", "pmid": "39287373", "pos": "last", "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB39610", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39610", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39813", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenomic study of the oral (saliva) and Gut (stool) microbiome in subjects with Croh…"}, {"acc": "PRJEB41102", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB41102", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB42013", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Non-invasive, robust and specific fecal microbiota-based screening for the early detectio…"}, {"acc": "PRJEB42363", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB4336", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB44737", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB44737", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB46788", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB46788", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB6070", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6070", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6070", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6092", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "metagenome fecal microbiota, Ilumina seq reads of 12 individuals at 2 timepoints"}, {"acc": "PRJEB6456", "pmid": "34152069", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6997", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut and Oral Microbiome Dysbiosis in Rheumatoid Arthritis"}, {"acc": "PRJEB70237", "pmid": "40315414", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB70237", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB7774", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB7774", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB7774", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB8094", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB8347", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJEB9150", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbial succession follows acute secretory diarrhea in humans"}, {"acc": "PRJEB9150", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbial succession follows acute secretory diarrhea in humans"}, {"acc": "PRJEB9576", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA1046438", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA1046438", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA188481", "pmid": "36177457", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA215106", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA231909", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA268964", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA275349", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA278393", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA278393", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA287207", "pmid": "26231653", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "34152069", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA289586", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA290380", "pmid": "34152069", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA297252", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal microbiota dynamics in hospitalized patients"}, {"acc": "PRJNA299502", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA301903", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA305507", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA305507", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA307231", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA317435", "pmid": "36177457", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "ImMicroDyn"}, {"acc": "PRJNA319574", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA320015", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Technical validation of ethanol fixation on stool canine and infant metagenomes"}, {"acc": "PRJNA321218", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA321218", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA322188", "pmid": "34152069", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA324129", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human fecal microbiome before and after consumption of AH1206 - Raw sequence reads"}, {"acc": "PRJNA324672", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA327106", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA331138", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of Italian metagenome"}, {"acc": "PRJNA336518", "pmid": "36123315", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA339012", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics analysis of donor and recepient samples from fecal transplant for Recurrent…"}, {"acc": "PRJNA339914", "pmid": "34152069", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA340216", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota and metagenomic diversity of omnivore, vegetarian and vegan healthy subjec…"}, {"acc": "PRJNA345144", "pmid": "34152069", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "34152069", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA360177", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA360177", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA362284", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA371647", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Raw sequence reads"}, {"acc": "PRJNA373879", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Healthy human fecal metagenomes variably reactivate Irinotecan active metabolite"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379741", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "MECFS metagenomics"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}, {"acc": "PRJNA380118", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA382011", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics-Guided Pathogen Discovery in Travelers' Diarrhea"}, {"acc": "PRJNA384716", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA386422", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA386422", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA386422", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA389927", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Viral and Bacterial Communities of Colorectal Cancer"}, {"acc": "PRJNA390646", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA392180", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA396794", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA397219", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA400072", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA400072", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA400072", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA401385", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA401385", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA401385", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA412411", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA413160", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenome data from infant stools samples raw sequence reads"}, {"acc": "PRJNA413162", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenome data from infant (PD and ProD) stools samples raw sequence reads"}, {"acc": "PRJNA414479", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Total lipopolysaccharide from the human gut microbiome silences toll-like receptor signal…"}, {"acc": "PRJNA417343", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y5 Cohort)"}, {"acc": "PRJNA418941", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota functionality of healthy controls and individuals with kidney stones"}, {"acc": "PRJNA421881", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA422434", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422569", "pmid": "30126456", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA428202", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "healthy human gut metagenomics"}, {"acc": "PRJNA431482", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA431482", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA433459", "pmid": "36177457", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "gut metagenome Metagenome"}, {"acc": "PRJNA436562", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA438847", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA438847", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA438847", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA445968", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA449784", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA449784", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA472785", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Gut Microbiome Metagenomic Sequencing"}, {"acc": "PRJNA473126", "pmid": "34152069", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "34152069", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA482729", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of native and acetylated high amylose maize starch on fecal pH, short chain fatty…"}, {"acc": "PRJNA485056", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA486782", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486795", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Modification of gut microbiota-bile acid-intestinal FXR signaling leads to the clinical b…"}, {"acc": "PRJNA487305", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Effects of non-nutritive sweeteners on the composition of the human gut microbiome"}, {"acc": "PRJNA489090", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489693", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA492716", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA497734", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA499081", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}, {"acc": "PRJNA503909", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA503909", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA509512", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiota changes are associated with acquisition of antibiotic resistant genes among in…"}, {"acc": "PRJNA517801", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS_Liver_disease"}, {"acc": "PRJNA518912", "pmid": "36123315", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA521587", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521587", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521878", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA521878", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "34152069", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA527208", "pmid": "36177457", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA527208", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA527208", "pmid": "39287373", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA529124", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529230", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "n of 1 study: Fecal Microbiota Transplantation in Multiple Sclerosis"}, {"acc": "PRJNA531203", "pmid": "36177457", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531203", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531203", "pmid": "39287373", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531316", "pmid": "39287373", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "CARBEPAD"}, {"acc": "PRJNA532310", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut metagenome"}, {"acc": "PRJNA532538", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome of the gut microbiota in multiple system atrophy patients"}, {"acc": "PRJNA542703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA544527", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA547591", "pmid": "36177457", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547591", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547591", "pmid": "39287373", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547717", "pmid": "36123315", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "human oral metagenome Raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "34152069", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA553191", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA553191", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA553191", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA557731", "pmid": "34152069", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA562600", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Multi-omic analysis of Clostridioides difficile infection and response to therapy in pedi…"}, {"acc": "PRJNA562766", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA573963", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut Microbiome of Elderly Adults with Advanced Dementia"}, {"acc": "PRJNA588513", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA588513", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA588513", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA589622", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Underfeeding and oral vancomycin perturb the human gut microbiome and impair nutrient abs…"}, {"acc": "PRJNA589622", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Underfeeding and oral vancomycin perturb the human gut microbiome and impair nutrient abs…"}, {"acc": "PRJNA589866", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA594393", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to FOS intake"}, {"acc": "PRJNA594610", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to PDX intake"}, {"acc": "PRJNA594613", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to FOS intake followed by PDX intake"}, {"acc": "PRJNA594620", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to PDX intake followed by FOS intake"}, {"acc": "PRJNA597839", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota, visceral fat and sleeve gastrectomy"}, {"acc": "PRJNA598446", "pmid": "39287373", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A Novel Index for Predicting Health Status Using Species-level Gut Microbiome Profiling"}, {"acc": "PRJNA606198", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Comparison of methods to collect fecal samples for microbiome studies using whole-genome…"}, {"acc": "PRJNA613834", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Functional Microbial Responses to Alcohol Abstinence in Patients with Alcohol Use Disorder"}, {"acc": "PRJNA615162", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615162", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615842", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}, {"acc": "PRJNA624223", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624223", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624223", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624763", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA624763", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA624763", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA626004", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics Fecal Microbiome Dysbiosis in Parkinsons Disease"}, {"acc": "PRJNA628604", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}, {"acc": "PRJNA629392", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}, {"acc": "PRJNA633576", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA634145", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA63661", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA637175", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}, {"acc": "PRJNA637878", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA637878", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA644725", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA644725", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA648487", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA649316", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Hi-C and metagenomic sequencing of neutropenic patient microbiomes"}, {"acc": "PRJNA650244", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with COVID-19"}, {"acc": "PRJNA658422", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "gut microbiome shifts associated with Henoch-Schonlein purpura"}, {"acc": "PRJNA663646", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "External validation cohorts for CRC-SNP analysis"}, {"acc": "PRJNA664544", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut microbes Metagenome"}, {"acc": "PRJNA665061", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665061", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665854", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS of feces and saliva of pancreatic cancer patients"}, {"acc": "PRJNA672867", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effectiveness of Fecal Microbiota Transplant together with PD-1 blockade in overcoming re…"}, {"acc": "PRJNA678426", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes."}, {"acc": "PRJNA678454", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of stool samples from two South African cohorts"}, {"acc": "PRJNA679346", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA679346", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA679346", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA685797", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The Influence of the gut microbiome on BCG-induced trained immunity"}, {"acc": "PRJNA686265", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-mediated metabolism effects on immunity in rural and urban African populat…"}, {"acc": "PRJNA686821", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics data from human stool microorganism Raw sequence reads"}, {"acc": "PRJNA687536", "pmid": "36177457", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA687536", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA687536", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA688164", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688164", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688164", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688274", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA688881", "pmid": "36177457", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Metagenome-wide association study of gut microbiome revealed potential etiology of Pediat…"}, {"acc": "PRJNA692830", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole genome metagenomic analysis of the gut microbiome in HIV-1 infected individuals on…"}, {"acc": "PRJNA695570", "pmid": "36177457", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA698773", "pmid": "33973321", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA698773", "pmid": "34715437", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA698986", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA699281", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The microbiome of aging: instability, heterogeneity, and pathogenicity reservoirs in the…"}, {"acc": "PRJNA705895", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA714678", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA714678", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA715615", "pmid": "34152069", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Rural infant gut microbiota"}, {"acc": "PRJNA730640", "pmid": "39287373", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}, {"acc": "PRJNA742740", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiota of Kidney Stone patients and live-in partners"}, {"acc": "PRJNA750475", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Longitudinal Analysis of Gut Microbiome among healthy women"}, {"acc": "PRJNA752006", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing to Examine the Gut Microbiome in Konzo"}, {"acc": "PRJNA762543", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA762543", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA763503", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Character of microbial engraftment following the fecal microbiota transplantation in pati…"}, {"acc": "PRJNA772518", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA772518", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA772518", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA782810", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Exploring the species-level infant gut bacterial biodiversity through a meta-analysis and…"}, {"acc": "PRJNA788972", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Interactions between human gut microbiome dynamics and sub-optimal health symptoms during…"}, {"acc": "PRJNA832909", "pmid": "39287373", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}, {"acc": "PRJNA833139", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gender-specific cross-generational microbial persistence of human gut microbes"}, {"acc": "PRJNA975734", "pmid": "37728335", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Disentangling the interactions between nasopharyngeal and gut microbiome and their involv…"}, {"acc": "PRJNA991269", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "milanovic b": {"display": "Milanovic B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA290380", "pmid": "30894435", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "milanowska k": {"display": "Milanowska K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA290380", "pmid": "30894435", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "milanowska-zabel k": {"display": "Milanowska-Zabel K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA749919", "pmid": "35589762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An optimized approach to the metagenomic population studies: from sample donation to comm…"}]}, "milburn o": {"display": "Milburn O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1364313", "pmid": "35794664", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Antibiotic impact on preterm infant microbiome maturation"}]}, "miles m": {"display": "Miles M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "42311381", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "miliauskiene z": {"display": "Miliauskienė Ž", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37508", "pmid": "32528126", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "A treponemal genome from an historic plague victim supports recent emergence of yaws and…"}]}, "miliku k": {"display": "Miliku K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "miliya t": {"display": "Miliya T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893826", "pmid": "38622998", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Culture-independent long read metagenomic diagnostics for genomic surveillance and infect…"}]}, "miller aw": {"display": "Miller AW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA315636", "pmid": "26896138", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Neotoma albigula fecal microbial communities Targeted Locus (Loci)"}]}, "miller c": {"display": "Miller C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177516", "pmid": "40483244", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Changes in Fecal Microbiota in Adults with Cystic Fibrosis with 6 Months of CFTR Modulato…"}]}, "miller cm": {"display": "Miller CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA751712", "pmid": "35345612", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "To Probiotic or not to probiotic: using metagenomics to compare the gut microbiome of inf…"}, {"acc": "PRJNA751712", "pmid": "35796792", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "To Probiotic or not to probiotic: using metagenomics to compare the gut microbiome of inf…"}]}, "miller cs": {"display": "Miller CS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA221723", "pmid": "24468033", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}]}, "miller ea": {"display": "Miller EA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA605836", "pmid": "32769191", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomics of Enterobacteriaceae from wild owls"}]}, "miller g": {"display": "Miller G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557226", "pmid": "31578522", "pos": "last", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}]}, "miller ge": {"display": "Miller GE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA911205", "pmid": "37726348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Psychosocial adversity experienced in utero and early life is associated with variation i…"}]}, "miller jp": {"display": "Miller JP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA911205", "pmid": "37726348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Psychosocial adversity experienced in utero and early life is associated with variation i…"}]}, "miller m": {"display": "Miller M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52774", "pmid": "38058765", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}]}, "miller ma": {"display": "Miller MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA297252", "pmid": "26975510", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Intestinal microbiota dynamics in hospitalized patients"}]}, "miller me": {"display": "Miller ME", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA613851", "pmid": "38091183", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "INVESTIGATION OF THE BACTERIAL AND VIRAL DIVERSITY OF DIDELPHID OPOSSUMS FROM BRAZILIAN F…"}]}, "miller ms": {"display": "Miller MS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA674643", "pmid": "35474894", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Validation of Coronavirus and Sepsis Probe Sets designed using HUBDesign"}]}, "miller n": {"display": "Miller N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "miller s": {"display": "Miller S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA171119", "pmid": "20976137", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}, {"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}, {"acc": "PRJNA412411", "pmid": "34163067", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}]}, "miller sa": {"display": "Miller SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "21559002", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "miller si": {"display": "Miller SI", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA285502", "pmid": "26288277", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiota transplantation (FMT) for ulcerative colitis"}, {"acc": "PRJNA314903", "pmid": "24178246", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Pseudomonas Aeruginosa Early CF Adaptive Changes"}, {"acc": "PRJNA510445", "pmid": "31959989", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA510445", "pmid": "34525965", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA516442", "pmid": "30784601", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Depletion of human DNA from complex clinical samples for metagenomic sequencing"}, {"acc": "PRJNA530252", "pmid": "32631930", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effect of cycled, inhaled tobramycin on the sputum microbiome in cystic fibrosis"}]}, "millimono sl": {"display": "Millimono SL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "millimouno te": {"display": "Millimouno TE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "mills da": {"display": "Mills DA", "group": false, "n_studies": 18, "studies": [{"acc": "PRJEB15633", "pmid": "28079170", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJEB15633", "pmid": "35406036", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJEB6456", "pmid": "30258040", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA273761", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA384716", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "29242832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA390646", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA436562", "pmid": "30258040", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA63661", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "mills m": {"display": "Mills M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA894152", "pmid": "37715296", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Long read infant/young children fecal and environmental samples"}]}, "mills mg": {"display": "Mills MG", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1066815", "pmid": "38963827", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human rhinovirus A, B and C in Washington State"}, {"acc": "PRJNA723895", "pmid": "38963827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Rhinovirus NGS"}]}, "mills rh": {"display": "Mills RH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42155", "pmid": "35087228", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}]}, "mills s": {"display": "Mills S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA385126", "pmid": "29761040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA48479", "pmid": "29761040", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "milner gr": {"display": "Milner GR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445215", "pmid": "29959351", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "milosevic i": {"display": "Milošević I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA997754", "pmid": "38231265", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Pioneering gut health improvements in piglets with phytogenic feed additives"}]}, "minard-colin v": {"display": "Minard-Colin V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "minelli f": {"display": "Minelli F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB23207", "pmid": "29468143", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic characterization of the human intestinal microbiota in faecal samples from ST…"}]}, "minich jj": {"display": "Minich JJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819194", "pmid": "35606844", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "KRuMBS: Kyphosid Ruminant Microbial Biodigestor of Seaweeds"}]}, "minot ss": {"display": "Minot SS", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB6456", "pmid": "39428758", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA475246", "pmid": "39428758", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA486782", "pmid": "39428758", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA510445", "pmid": "39428758", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "39428758", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA630999", "pmid": "39428758", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "39428758", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "miotto e": {"display": "Miotto E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976261", "pmid": "31153098", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole metagenomic shotgun sequencing of the subgingival microbiome of diabetics and non-d…"}]}, "miralles a": {"display": "Miralles A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}]}, "miranda tds": {"display": "Miranda TDS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA847605", "pmid": "36565815", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosa…"}]}, "mirarab s": {"display": "Mirarab S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "32427907", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "miro e": {"display": "Miró E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA590575", "pmid": "32317653", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Bacteriophages in human samples"}]}, "miron im": {"display": "Miron IM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA30563", "pmid": "18976571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High throughput sequence to detect the presence of a pathogenic microbe in a clinical hum…"}]}, "mirzaeigarakani t": {"display": "Mirzaeigarakani T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA240141", "pmid": "36284144", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "mishima h": {"display": "Mishima H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB15907", "pmid": "37621086", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alpha-HPV-targeted sequence for cervical swab specimens"}]}, "mishra p": {"display": "Mishra P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA630999", "pmid": "33665175", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}]}, "mishra rk": {"display": "Mishra RK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "mishra sp": {"display": "Mishra SP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912638", "pmid": "37213047", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MICROBIOME IN AGING GUT AND BRAIN (MiaGB) STUDY"}]}, "misra r": {"display": "Misra R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15257", "pmid": "28149696", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}]}, "misra rv": {"display": "Misra RV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15257", "pmid": "34362295", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}]}, "mitchel a": {"display": "Mitchel A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "mitchell al": {"display": "Mitchell AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22200", "pmid": "31957879", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenomic Analysis of Microbial Composition of Kombucha"}]}, "mitchell cm": {"display": "Mitchell CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657818", "pmid": "33377127", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}]}, "mitchell da": {"display": "Mitchell DA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB102033", "pmid": "41330369", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lantibiotic-producing bacteria impact microbiome resilience and colonization resistance"}]}, "mitchell ea": {"display": "Mitchell EA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB25144", "pmid": "25874666", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Temporal patterns of soil micro-eukaryotic diversity beneath decomposing pig cadavers as…"}]}, "mitchell j": {"display": "Mitchell J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "mitchell r": {"display": "Mitchell R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA390646", "pmid": "31423298", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}]}, "mitchell rd": {"display": "Mitchell RD", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA630999", "pmid": "33665175", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA633576", "pmid": "33479326", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA772730", "pmid": "35071138", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The FOUNDATION Study: Hospital Formulation Of B. infantis EVC001 Utilized In The NICU To…"}]}, "mitra s": {"display": "Mitra S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB12272", "pmid": "27984120", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A statistical test for the detection of inhomogeneity in metagenomic samples"}, {"acc": "PRJEB14935", "pmid": "29096601", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Term and preterm shotgun samples"}]}, "mitreva m": {"display": "Mitreva M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA911205", "pmid": "37726348", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Psychosocial adversity experienced in utero and early life is associated with variation i…"}]}, "mittendorf ea": {"display": "Mittendorf EA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1295573", "pmid": "41760690", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The intestinal microbiome of patients with newly diagnosed invasive breast cancer and duc…"}]}, "miura k": {"display": "Miura K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB15907", "pmid": "37621086", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alpha-HPV-targeted sequence for cervical swab specimens"}]}, "miura s": {"display": "Miura S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB15907", "pmid": "37621086", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alpha-HPV-targeted sequence for cervical swab specimens"}]}, "mixao v": {"display": "Mixão V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "35750157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "36131032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "miyachi m": {"display": "Miyachi M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB14457", "pmid": "36363762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of healthy Japanese adult"}]}, "miyama t": {"display": "Miyama T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "miyoshi si": {"display": "Miyoshi SI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10675", "pmid": "36376441", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "International collaborative studies on the prevention, diagnosis, and drug discovery for…"}]}, "miyoshi-akiyama t": {"display": "Miyoshi-Akiyama T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "mizokami m": {"display": "Mizokami M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "mizuguchi k": {"display": "Mizuguchi K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB14457", "pmid": "36363762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of healthy Japanese adult"}]}, "mizuno y": {"display": "Mizuno Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "mizutani s": {"display": "Mizutani S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "mizutani t": {"display": "Mizutani T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB5383", "pmid": "28095784", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of a novel bovine enterovirus possessing highly divergent amino acid seque…"}]}, "mkrtchyan r": {"display": "Mkrtchyan R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "mmbaga bt": {"display": "Mmbaga BT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73590", "pmid": "37111504", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}, {"acc": "PRJEB73590", "pmid": "38235427", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}]}, "mo c": {"display": "Mo C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1127293", "pmid": "39065200", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "fecal microbial composition in Parkinson's disease"}]}, "moal h": {"display": "Moal H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "mobegi fm": {"display": "Mobegi FM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA503909", "pmid": "33074097", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}]}, "mobley cb": {"display": "Mobley CB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1201756", "pmid": "34569067", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome Metagenome"}]}, "mochizuki h": {"display": "Mochizuki H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "mochizuki y": {"display": "Mochizuki Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "modesti m": {"display": "Modesti M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "modesto m": {"display": "Modesto M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA300541", "pmid": "42312244", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "mogga jjh": {"display": "Mogga JJH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}]}, "moghaddam va": {"display": "Moghaddam VA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}]}, "mogno i": {"display": "Mogno I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA946744", "pmid": "39666007", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Homo sapiens metagenomic sequences"}]}, "mohamad m": {"display": "Mohamad M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1307628", "pmid": "41461922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbial oral-gut translocation in advanced chronic liver disease is linked to exacerbat…"}]}, "mohamed amt": {"display": "Mohamed AMT", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA400072", "pmid": "41299229", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA615162", "pmid": "41299229", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA821542", "pmid": "41299229", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut metagenomes from mothers and their infants in the EDIA study"}]}, "mohammad f": {"display": "Mohammad F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "mohammad ha": {"display": "Mohammad HA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA587350", "pmid": "32000795", "pos": "first", "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "viral metagenomic sequencing in Kuwait"}]}, "mohammad m": {"display": "Mohammad M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA400259", "pmid": "33328537", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human Milk Microbiome Metagenome"}]}, "mohammadzadeh p": {"display": "Mohammadzadeh P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA916259", "pmid": "40140473", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}]}, "mohammadzadeh r": {"display": "Mohammadzadeh R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB77729", "pmid": "39714161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "First-Year Dynamics of the Microbiome in Infants’ Oral and Gastrointestinal Systems"}]}, "mohammed a": {"display": "Mohammed A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "32351922", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "33042218", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "33553097", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "mohar lorbeg p": {"display": "Mohar Lorbeg P", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA339914", "pmid": "36170451", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA343144", "pmid": "36170451", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome Metagenomic assembly"}, {"acc": "PRJNA400259", "pmid": "36170451", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human Milk Microbiome Metagenome"}, {"acc": "PRJNA524170", "pmid": "36170451", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Resistant microbiome underlies antibiotic therapy in pouchitis"}]}, "mohellibi n": {"display": "Mohellibi N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA992639", "pmid": "38876584", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Novel misos shape distinct microbial ecologies"}]}, "mohsen a": {"display": "Mohsen A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB14457", "pmid": "36363762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of healthy Japanese adult"}]}, "moine d": {"display": "Moine D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54707", "pmid": "35990340", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, 2-HMO vs. control formula"}]}, "moineau s": {"display": "Moineau S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40396485", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}]}, "moir-meyer g": {"display": "Moir-Meyer G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39143045", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "moisan mp": {"display": "Moisan MP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA438436", "pmid": "31270376", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The gut microbiota influence the basal physiological parameters in equine athletes"}]}, "moiseyev v": {"display": "Moiseyev V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "moissl-eichinger c": {"display": "Moissl-Eichinger C", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB37883", "pmid": "29152325", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": "32354144", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": "36906612", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": null, "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB77729", "pmid": "39714161", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "First-Year Dynamics of the Microbiome in Infants’ Oral and Gastrointestinal Systems"}, {"acc": "PRJNA1108908", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1108960", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1109334", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}]}, "moitinho-silva l": {"display": "Moitinho-Silva L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}]}, "mokili jl": {"display": "Mokili JL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1088476", "pmid": "40321713", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Cameroonian blackflies (Diptera: Simuliidae) harbour a plethora of (RNA) viruses"}, {"acc": "PRJNA80601", "pmid": "23554892", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterization of the nasopharyngeal virome in patients with influenza-like illness of…"}]}, "mokomane m": {"display": "Mokomane M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA980291", "pmid": "38298144", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Targeted Capture of AMR in children in Botswana"}]}, "mokurov s": {"display": "Mokurov S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "molari m": {"display": "Molari M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1236482", "pmid": "42020750", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Short-term clinical evolution of Enterococcus faecium"}]}, "moldvay j": {"display": "Moldvay J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA626477", "pmid": "34002024", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut microbiota Raw sequence reads with and without cancer cachexia"}]}, "molina ma": {"display": "Molina MA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA856437", "pmid": "36171433", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cervicovaginal microbial communities and hrHPV infections"}, {"acc": "PRJNA856437", "pmid": "37731597", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cervicovaginal microbial communities and hrHPV infections"}, {"acc": "PRJNA856437", "pmid": null, "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cervicovaginal microbial communities and hrHPV infections"}, {"acc": "PRJNA888791", "pmid": "36171433", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Longitudinal profiling of the cervicovaginal microbiome"}, {"acc": "PRJNA888791", "pmid": "37731597", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Longitudinal profiling of the cervicovaginal microbiome"}, {"acc": "PRJNA888791", "pmid": null, "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Longitudinal profiling of the cervicovaginal microbiome"}]}, "molina s": {"display": "Molina S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "molina-montes e": {"display": "Molina-Montes E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "moline hl": {"display": "Moline HL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}, {"acc": "PRJNA1195144", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "moll jm": {"display": "Moll JM", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB72531", "pmid": "38424099", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prebiotic intervention for muscle function and cognition"}, {"acc": "PRJEB84944", "pmid": "40885737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of 56 mother-infant dyads from the ALADDIN birth cohort"}, {"acc": "PRJNA633381", "pmid": "33662387", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "IgA deficiency microbiota"}]}, "molldrem jj": {"display": "Molldrem JJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "mollenhauer b": {"display": "Mollenhauer B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA381395", "pmid": "28843021", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut and nasal microbiome in Parkinson''s disease"}, {"acc": "PRJNA782492", "pmid": "40707492", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MiBiPa - Non-invasive microbiome-derived multi-omic biomarkers for the early-stage detect…"}]}, "mollerup s": {"display": "Mollerup S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB12636", "pmid": "26818667", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of P. acnes levels in NGS data from cancer samples"}, {"acc": "PRJNA789782", "pmid": "34970712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of bat coronaviruses from Eswatini"}]}, "molnar e": {"display": "Molnár E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "molnar-gabor d": {"display": "Molnar-Gabor D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "38838470", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "molokin a": {"display": "Molokin A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1406675", "pmid": "41901112", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "GEO accession GSE317287 is currently private and is scheduled to be released on Jul 01, 2…"}]}, "moltzau-anderson j": {"display": "Moltzau-Anderson J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": "39122767", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}, {"acc": "PRJNA737472", "pmid": null, "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "mombelli a": {"display": "Mombelli A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39870", "pmid": "33646178", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Oral microbial community profiles in Parkinson’s disease"}]}, "momin z": {"display": "Momin Z", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "mommers m": {"display": "Mommers M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB89491", "pmid": "42057198", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LucKi Gut - Longitudinal metagenomic sequencing of infant gut microbiota"}, {"acc": "PRJNA1230889", "pmid": "42020426", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}, {"acc": "PRJNA1230889", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}]}, "momo cabrera p": {"display": "Momo Cabrera P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB79382", "pmid": "39932403", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Stool microbiota stability"}, {"acc": "PRJEB79382", "pmid": null, "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Stool microbiota stability"}]}, "momoh m": {"display": "Momoh M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "monaco cl": {"display": "Monaco CL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB7772", "pmid": "25619688", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}, {"acc": "PRJNA1290379", "pmid": "41593042", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool"}]}, "monadjem a": {"display": "Monadjem A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA789782", "pmid": "34970712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of bat coronaviruses from Eswatini"}]}, "moncera k": {"display": "Moncera K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA543520", "pmid": "32239170", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}]}, "mondini m": {"display": "Mondini M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "mondragon l": {"display": "Mondragón L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "moneti v": {"display": "Moneti V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "monette s": {"display": "Monette S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "monge c": {"display": "Monge C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "monnet c": {"display": "Monnet C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6314", "pmid": "25496341", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Construction of a dairy microbial genome catalog opens new perspectives for the metagenom…"}]}, "monot m": {"display": "Monot M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "monsieurs p": {"display": "Monsieurs P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685914", "pmid": "33854066", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiota-based markers predictive of development of Clostridioides difficile infection"}]}, "montagut a": {"display": "Montagut A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA925842", "pmid": "36750571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut bacteria glycan metabolism - Raw sequence reads"}]}, "montalibet j": {"display": "Montalibet J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202388", "pmid": "25028422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "montandon sa": {"display": "Montandon SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36797", "pmid": "32711187", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The GLP-1R agonist liraglutide limits hepatic lipotoxicity and inflammatory response in m…"}]}, "montealegre mc": {"display": "Montealegre MC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA706606", "pmid": "36416733", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of Water Chlorination of Children's Gut Microbiomes in Bangladesh"}, {"acc": "PRJNA726052", "pmid": "35422497", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effects of drinking water chlorination on childrens intestinal flora and resistomes in Dh…"}]}, "montel mc": {"display": "Montel MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6314", "pmid": "25496341", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Construction of a dairy microbial genome catalog opens new perspectives for the metagenom…"}]}, "montes de oca g": {"display": "Montes de Oca G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "monti d": {"display": "Monti D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA877820", "pmid": "32209716", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "montmayeur a": {"display": "Montmayeur A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA322324", "pmid": "26893429", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "27932649", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA853174", "pmid": "35891376", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "montmayeur am": {"display": "Montmayeur AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "26966223", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "27927929", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "28818890", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "montoya mcm": {"display": "Montoya MCM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "montresor m": {"display": "Montresor M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "montuori m": {"display": "Montuori M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "moodley c": {"display": "Moodley C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37312", "pmid": "33072693", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "The utility of shotgun metagenomics to investigate the carriage of, and longitudinal chan…"}]}, "moodley y": {"display": "Moodley Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}]}, "moodley-govender e": {"display": "Moodley-Govender E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA549787", "pmid": "31832638", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}]}, "moody tu": {"display": "Moody TU", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}]}, "moon cd": {"display": "Moon CD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "moon ss": {"display": "Moon SS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "26966223", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "moon y": {"display": "Moon Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}]}, "moonga l": {"display": "Moonga L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB3158", "pmid": "25381053", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shrew fecal metagenome"}]}, "moore aa": {"display": "Moore AA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1236482", "pmid": "42020750", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Short-term clinical evolution of Enterococcus faecium"}]}, "moore am": {"display": "Moore AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA215106", "pmid": "24236055", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}]}, "moore b": {"display": "Moore B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "moore j": {"display": "Moore J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081394", "pmid": "38564694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sinus, throat, and sputum airway microbiology in cystic fibrosis"}]}, "moore k": {"display": "Moore K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA213036", "pmid": "24072871", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Cronobacter sakazakii NCIMB 8272 Genome sequencing and assembly"}]}, "moore m": {"display": "Moore M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42304", "pmid": "31843589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differences in Fecal Microbiomes and Metabolomes of People With vs Without Irritable Bowe…"}]}, "moore r": {"display": "Moore R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB48251", "pmid": "39365058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJNA422569", "pmid": "30126456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}]}, "moore rl": {"display": "Moore RL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "37230981", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "moore se": {"display": "Moore SE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15633", "pmid": "28079170", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}]}, "mootapally c": {"display": "Mootapally C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB26614", "pmid": "30412889", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Khambhat"}, {"acc": "PRJEB26614", "pmid": "31754151", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Khambhat"}, {"acc": "PRJEB26615", "pmid": "30412889", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Kutch"}, {"acc": "PRJEB26615", "pmid": "31754151", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Kutch"}]}, "mor m": {"display": "Mor M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975734", "pmid": "37728335", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Disentangling the interactions between nasopharyngeal and gut microbiome and their involv…"}]}, "mor u": {"display": "Mor U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "mora m": {"display": "Mora M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "40131312", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "morabito c": {"display": "Morabito C", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB52431", "pmid": "36971547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In Vitro Modelling of Oral Microbial Invasion in the Human Colon"}, {"acc": "PRJEB59994", "pmid": "37892187", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evaluation of an Adapted Semi-Automated DNA Extraction for Human Salivary Shotgun Metagen…"}, {"acc": "PRJEB60621", "pmid": "37989857", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Is the oral microbiota implicated in taste perception? Investigation of saliva and tongue…"}, {"acc": "PRJEB80549", "pmid": "41196055", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterisation of the forehead and armpit skin microbiome of healthy individuals using…"}]}, "morabito s": {"display": "Morabito S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB23207", "pmid": "29468143", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic characterization of the human intestinal microbiota in faecal samples from ST…"}]}, "morad g": {"display": "Morad G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "moraes tj": {"display": "Moraes TJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "37644001", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "40623174", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "42337243", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "moraga m": {"display": "Moraga M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB104199", "pmid": "42531397", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "The genomic identity of early smallpox in South America"}]}, "morais e": {"display": "Morais E", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB32631", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA322188", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA339914", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA475246", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "morales a": {"display": "Morales A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "morales ml": {"display": "Morales ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698223", "pmid": "36470885", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "TD Cusco travelers study"}]}, "morales-espinosa r": {"display": "Morales-Espinosa R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807808", "pmid": "37080313", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microalgae-bacteria system for domestic wastewater treatment"}]}, "moran ae": {"display": "Moran AE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA793907", "pmid": "35908379", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial 16S rRNA gene sequences from fecal samples of prostate cancer patients treated…"}]}, "moran p": {"display": "Morán P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA592261", "pmid": "32788688", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "35196791", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "36650178", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}]}, "moran-silva p": {"display": "Morán-Silva P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1258733", "pmid": "42127418", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Metagenome"}]}, "moravkova m": {"display": "Moravkova M", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB12124", "pmid": "38652229", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-dependent stratification of patients for anti-diabetic treatment"}, {"acc": "PRJNA563062", "pmid": "38652229", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Capybara (Hydrochoerus hydrochaeris) Metagenome"}, {"acc": "PRJNA684904", "pmid": "38652229", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "human gut metagenome Genome sequencing and assembly"}, {"acc": "PRJNA747761", "pmid": "38652229", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Atlanta, USA and Maputo, Mozambique Children gut microbiome Metagenome"}]}, "moreau f": {"display": "Moreau F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "moreira frr": {"display": "Moreira FRR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA847605", "pmid": "36565815", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosa…"}]}, "moreira r": {"display": "Moreira R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}]}, "morel d": {"display": "Morel D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "morel-journel t": {"display": "Morel-Journel T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45090", "pmid": "39665373", "pos": null, "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "ED Gut"}]}, "morenko m": {"display": "Morenko M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1217583", "pmid": "40299456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic predictors of childhood obesity, cross-talk with maternal microflora"}, {"acc": "PRJNA949528", "pmid": "37308527", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}, {"acc": "PRJNA949528", "pmid": "40299456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}]}, "moreno a": {"display": "Moreno A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA787952", "pmid": "35239511", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}]}, "moreno s": {"display": "Moreno S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB5185", "pmid": "25407519", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysfunctional gut microbiota drives chronic immune activation in HIV-treated individuals"}, {"acc": "PRJEB75958", "pmid": "33602945", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "moreno-estrada a": {"display": "Moreno-Estrada A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}, {"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "moreno-gonzalez m": {"display": "Moreno-Gonzalez M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1307628", "pmid": "41461922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbial oral-gut translocation in advanced chronic liver disease is linked to exacerbat…"}]}, "moreno-hagelsieb g": {"display": "Moreno-Hagelsieb G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202388", "pmid": "22180823", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "morfopoulou s": {"display": "Morfopoulou S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB32319", "pmid": "32004756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Reads sequenced from a parchment blood stain attributed to the french revolutionary Jean…"}]}, "morgan sj": {"display": "Morgan SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA860728", "pmid": "36121157", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "GenCap-Seq Selectively Enriches Bacterial DNA and Enables Genome-wide Measurement of Intr…"}]}, "morgan x": {"display": "Morgan X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1071073", "pmid": "38530358", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Transgender Mouse Bone Microbiome"}]}, "morgan xc": {"display": "Morgan XC", "group": false, "n_studies": 10, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}, {"acc": "PRJEB15371", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJNA1295573", "pmid": "41760690", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The intestinal microbiome of patients with newly diagnosed invasive breast cancer and duc…"}, {"acc": "PRJNA231909", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "30661755", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA356102", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA48479", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA504891", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "morgun a": {"display": "Morgun A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "mori a": {"display": "Mori A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB121228", "pmid": "38793608", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}, {"acc": "PRJEB121228", "pmid": "41683794", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}]}, "moriel n": {"display": "Moriel N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1312123", "pmid": "41203618", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Development of the preterm infant gut and gastric residuals microbiome"}]}, "morine mj": {"display": "Morine MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB2778", "pmid": "26399409", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}]}, "morisette a": {"display": "Morisette A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "morishita s": {"display": "Morishita S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA362284", "pmid": "31455406", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}]}, "morita d": {"display": "Morita D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10675", "pmid": "36376441", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "International collaborative studies on the prevention, diagnosis, and drug discovery for…"}]}, "morita m": {"display": "Morita M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10711", "pmid": "34090359", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics for pathogens detection from patients with fever of unknown origin"}]}, "moritoki n": {"display": "Moritoki N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "moritz rl": {"display": "Moritz RL", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}, {"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}, {"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "28721231", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "moriya k": {"display": "Moriya K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "morjaria sm": {"display": "Morjaria SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}]}, "moroishi y": {"display": "Moroishi Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA296814", "pmid": "35568730", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35847562", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35906254", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "36632065", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "36777525", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA695570", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "moroldo m": {"display": "Moroldo M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA438436", "pmid": "33898524", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The gut microbiota influence the basal physiological parameters in equine athletes"}]}, "morowitz m": {"display": "Morowitz M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA327106", "pmid": "28073918", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}]}, "morowitz mj": {"display": "Morowitz MJ", "group": false, "n_studies": 14, "studies": [{"acc": "PRJEB21259", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}, {"acc": "PRJNA215102", "pmid": "24451181", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant gut Metagenome"}, {"acc": "PRJNA221723", "pmid": "24468033", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "29180750", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "29180750", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "36478853", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA362245", "pmid": "24169577", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Microbiome assembly across multiple body sites in low-birthweight infants"}, {"acc": "PRJNA362245", "pmid": "28630471", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Microbiome assembly across multiple body sites in low-birthweight infants"}, {"acc": "PRJNA376566", "pmid": "29180750", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "29925423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "36478853", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376580", "pmid": "29180750", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hospital (NICU) surfaces and sinks"}, {"acc": "PRJNA376580", "pmid": "30770768", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hospital (NICU) surfaces and sinks"}, {"acc": "PRJNA396794", "pmid": "29359195", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA396794", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA417343", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y5 Cohort)"}, {"acc": "PRJNA60717", "pmid": "21191099", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomic analysis of infant stool sample"}, {"acc": "PRJNA60717", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analysis of infant stool sample"}, {"acc": "PRJNA61745", "pmid": "21191099", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Strain-resolved community genomic analysis of gut microbial colonization in a premature i…"}, {"acc": "PRJNA698986", "pmid": "34622230", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA698986", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA717139", "pmid": "34154658", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitaliz…"}]}, "morris a": {"display": "Morris A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA997754", "pmid": "38231265", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Pioneering gut health improvements in piglets with phytogenic feed additives"}]}, "morris sk": {"display": "Morris SK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "morrison hg": {"display": "Morrison HG", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA296814", "pmid": "29973274", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "30135504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "34215179", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "34454437", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35568730", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35847562", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "37138613", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA701961", "pmid": "37069665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA701961", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "morrison km": {"display": "Morrison KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA805248", "pmid": "36008821", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Targeted Capture of AMR in Preterm infants after probiotic exposure"}]}, "morrison m": {"display": "Morrison M", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB14969", "pmid": "27694811", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dairy and plant based food intakes are associated with altered faecal microbiota in 2 to…"}, {"acc": "PRJNA313232", "pmid": "27388460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteroidales group S24-7 population genome recovery"}, {"acc": "PRJNA715634", "pmid": "34035441", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Novel Strain Level Resolution of Crohns Disease Mucosa-Associated Microbiota via an ex vi…"}, {"acc": "PRJNA907943", "pmid": "36949471", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Characterisation and isolation of novel host-associated Methanocorpusculum species from n…"}]}, "morrow al": {"display": "Morrow AL", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB15633", "pmid": "35406036", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJNA46337", "pmid": "28274256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA63661", "pmid": "25332767", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA63661", "pmid": "26110908", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "morrow cd": {"display": "Morrow CD", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB32631", "pmid": "32431894", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA288562", "pmid": "32431894", "pos": "last", "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}, {"acc": "PRJNA542320", "pmid": "31700190", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacteria Genome sequencing and assembly"}, {"acc": "PRJNA593263", "pmid": "32431894", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Feces metagenome"}]}, "mortimer s": {"display": "Mortimer S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202388", "pmid": "25028422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "mortimer td": {"display": "Mortimer TD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352376", "pmid": "28072390", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}]}, "morton jt": {"display": "Morton JT", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB29169", "pmid": "31222023", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Establishing microbial composition measurement standards with reference frames"}, {"acc": "PRJNA624185", "pmid": "33239396", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Deep metagenomics examines the oral microbiome during advanced dental caries in children,…"}]}, "morton su": {"display": "Morton SU", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA797011", "pmid": "35707545", "pos": "first", "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "T cell receptor repertoire in premature infants"}]}, "moscona a": {"display": "Moscona A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29970463", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "moser ai": {"display": "Moser AI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA931814", "pmid": "37720151", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistome and microbiome analysis of stool samples from healthy people using shotgun meta…"}]}, "mosnier e": {"display": "Mosnier E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA371487", "pmid": "28715422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Leishmania RNA Virus Genomics'' study from French Guiana"}]}, "mosoni p": {"display": "Mosoni P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA646650", "pmid": "33658330", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "In vivo competitions between Fibrobacter succinogenes, Ruminococcus flavefaciens and Rumi…"}]}, "mosquito s": {"display": "Mosquito S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA802048", "pmid": "37882571", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Insights into the infant gut microbiome composition after bovine lactoferrin oral adminis…"}]}, "moss el": {"display": "Moss EL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA508395", "pmid": "32042169", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Nanopore long read assembly of the human gut metagenome"}]}, "mossmann k": {"display": "Mossmann K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA674643", "pmid": "35474894", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Validation of Coronavirus and Sepsis Probe Sets designed using HUBDesign"}]}, "mostacci n": {"display": "Mostacci N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21259", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}]}, "mostafa i": {"display": "Mostafa I", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}]}, "mostaghim a": {"display": "Mostaghim A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156457", "pmid": "39731681", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acanthamoeba sequencing"}]}, "mostyn p": {"display": "Mostyn P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60914", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Roles of gut microbiota-mediated nutrient competition and metabolite inhibition in the in…"}]}, "motazavi d": {"display": "Motazavi D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52147", "pmid": "35440708", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Association Between Milk Feedings in the Preterm Population, the Microbiome and Risk…"}]}, "motooka d": {"display": "Motooka D", "group": false, "n_studies": 3, "studies": [{"acc": "PRJDB10675", "pmid": "36376441", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "International collaborative studies on the prevention, diagnosis, and drug discovery for…"}, {"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "mottaz sc": {"display": "Mottaz SC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "moumen b": {"display": "Moumen B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}]}, "mounaud s": {"display": "Mounaud S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37312", "pmid": "33072693", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "The utility of shotgun metagenomics to investigate the carriage of, and longitudinal chan…"}, {"acc": "PRJNA475137", "pmid": "33245689", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhizopus oryzae Genome sequencing and assembly"}]}, "mounier j": {"display": "Mounier J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA636619", "pmid": "34053518", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome (DNAseq) of italian fermented sausages"}]}, "mourao gb": {"display": "Mourão GB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA987743", "pmid": "38163076", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Ruminal and Fecal Microbiomes of Brazilian Nelore Cattle"}]}, "moure pan": {"display": "Moure PAN", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46788", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB86954", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Integrating Metagenomics for Helminth Detection"}, {"acc": "PRJNA48479", "pmid": "41358671", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "mourier t": {"display": "Mourier T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12636", "pmid": "26818667", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of P. acnes levels in NGS data from cancer samples"}]}, "mourkas e": {"display": "Mourkas E", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA834762", "pmid": "38427700", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA837236", "pmid": "38427700", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA912682", "pmid": "38272215", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "38427700", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "39727415", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}]}, "mousseau ta": {"display": "Mousseau TA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA613381", "pmid": "32968071", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut…"}]}, "moussy a": {"display": "Moussy A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "moustafa a": {"display": "Moustafa A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA383868", "pmid": "32409670", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}]}, "moustafa am": {"display": "Moustafa AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1160256", "pmid": "39919360", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": "40941064", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}]}, "mouta r": {"display": "Mouta R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA847605", "pmid": "36565815", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosa…"}]}, "moutsopoulos nm": {"display": "Moutsopoulos NM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA604820", "pmid": "34936382", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin metagenome from antibiotics treated healthy human subjects"}]}, "mowerman i": {"display": "Mowerman I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "moya a": {"display": "Moya A", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB26810", "pmid": "34071061", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}, {"acc": "PRJEB26810", "pmid": "38257101", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}, {"acc": "PRJEB3085", "pmid": "23236009", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}, {"acc": "PRJEB3206", "pmid": "23760301", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of the viral and microbial metagenomes associated with the Crohn's disease"}, {"acc": "PRJEB39661", "pmid": "41513932", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}, {"acc": "PRJEB5185", "pmid": "25407519", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysfunctional gut microbiota drives chronic immune activation in HIV-treated individuals"}, {"acc": "PRJEB62571", "pmid": "41513932", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}, {"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "moya-nilges m": {"display": "Moya-Nilges M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "moyo sj": {"display": "Moyo SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1305341", "pmid": "42013844", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "ProRIDE Deep Seq Metagenomics Raw sequence reads"}]}, "mozetic p": {"display": "Mozetič P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB77875", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Seawater metagenomes collected during Jellyfish enrichment experiment"}]}, "mpairwe h": {"display": "Mpairwe H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "mseche b": {"display": "Mseche B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73590", "pmid": "37111504", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}]}, "mu a": {"display": "Mu A", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA400115", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}, {"acc": "PRJNA806984", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}, {"acc": "PRJNA994433", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Variability of Bifidobacterium Species in the Infant Gut is Independent of M…"}]}, "mu c": {"display": "Mu C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1166969", "pmid": "39470277", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Multi-Omics Analysis of the Microbial Profile Characteristics Associated with Pulmonary A…"}]}, "mu d": {"display": "Mu D", "group": false, "n_studies": 46, "studies": [{"acc": "PRJEB24006", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB27928", "pmid": "36050292", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB27928", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB32631", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "36050292", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB32731", "pmid": "38424077", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB36820", "pmid": "36050292", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB36820", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB6456", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9524", "pmid": "38424077", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Expanded Enteric Virome and Altered Bacterial Microbiome in Acquired Immunodeficiency Syn…"}, {"acc": "PRJNA272371", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA301903", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA301903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA385126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA387903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Intestinal Virome Changes Precede Autoimmunity in Type I Diabetes Susceptible Children"}, {"acc": "PRJNA390646", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA390646", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA396794", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA407341", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA436562", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA446038", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA491626", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut virome of Cameroonians living in close proximity with bats"}, {"acc": "PRJNA521878", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA521878", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA545408", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Longitudinal study of the human gut virome"}, {"acc": "PRJNA555020", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA562766", "pmid": "36050292", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA562766", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA657818", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA657818", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "mu m": {"display": "Mu M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1166969", "pmid": "39470277", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Multi-Omics Analysis of the Microbial Profile Characteristics Associated with Pulmonary A…"}]}, "muccioli gg": {"display": "Muccioli GG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43505", "pmid": "34535959", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut barrier and microbiota changes with glycine and branched chain amino acids supplement…"}]}, "muchisse o": {"display": "Muchisse O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "muegge bd": {"display": "Muegge BD", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA145005", "pmid": "22030749", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}, {"acc": "PRJNA209131", "pmid": "23976882", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacter…"}]}, "muehlbauer mj": {"display": "Muehlbauer MJ", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB38446", "pmid": "34001614", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiota (16S rDNA sequencing) and microbiome (shotgun sequencing) data of a pig model…"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA145005", "pmid": "22030749", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}]}, "mueller nt": {"display": "Mueller NT", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJNA1206145", "pmid": "40898384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of the gut microbiome from infants enrolled in a randomized controlled…"}, {"acc": "PRJNA1222487", "pmid": "42293161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome signatures and reduced Faecalibacterium and Roseburia in infants with earl…"}]}, "mueller rs": {"display": "Mueller RS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA400115", "pmid": "35729161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}]}, "mueller ym": {"display": "Mueller YM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "mugabushaka ji": {"display": "Mugabushaka JI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "mugnai d": {"display": "Mugnai D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21816", "pmid": "30991963", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Listeria monocytogenes abdominal periaortitis"}]}, "muhlhausler bs": {"display": "Muhlhausler BS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819247", "pmid": "36060782", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome Raw sequence reads"}]}, "muhummed am": {"display": "Muhummed AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA300541", "pmid": "38049420", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "muigg v": {"display": "Muigg V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35490", "pmid": "32187006", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tick-Borne Relapsing Fever caused by Borrelia persica in a Traveler returning from Centra…"}]}, "mukae h": {"display": "Mukae H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB7462", "pmid": "25080337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The genomic analysis of an unclutured bacterium IOLA detected from a patient with chronic…"}]}, "mukai y": {"display": "Mukai Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB8125", "pmid": "31549291", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metaviromic analyses on crane fecal samples"}]}, "mukhanbetzhanov n": {"display": "Mukhanbetzhanov N", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1217583", "pmid": "40299456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic predictors of childhood obesity, cross-talk with maternal microflora"}, {"acc": "PRJNA949528", "pmid": "37308527", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}, {"acc": "PRJNA949528", "pmid": "40299456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}, {"acc": "PRJNA949528", "pmid": "40399402", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}, {"acc": "PRJNA973824", "pmid": "40399402", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Immunoregulatory role of gut microbiome and mycobiome in aging"}]}, "mukherjee d": {"display": "Mukherjee D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1279970", "pmid": "42108276", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Carbon dioxide utilizing microaerophilic and anaerobic chemolithoautotrophic enrichments…"}]}, "mukherjee s": {"display": "Mukherjee S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB29065", "pmid": "37158607", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Daily sampling reveals personalized diet-microbiome associations"}, {"acc": "PRJNA290380", "pmid": "37158607", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "mukherji k": {"display": "Mukherji K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}]}, "mukhopadhyay ak": {"display": "Mukhopadhyay AK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10675", "pmid": "36376441", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "International collaborative studies on the prevention, diagnosis, and drug discovery for…"}]}, "mukhopadhyay s": {"display": "Mukhopadhyay S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA872399", "pmid": "36474348", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}, {"acc": "PRJNA903921", "pmid": "40469735", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Mycobiome Maturation and Its Determinants during Infancy: A Comparison of Shotgun Met…"}]}, "mularoni a": {"display": "Mularoni A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1294276", "pmid": "41019762", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human pegivirus isolate Pegi-ITA-25, complete genome."}]}, "mule g": {"display": "Mulè G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1294276", "pmid": "41019762", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human pegivirus isolate Pegi-ITA-25, complete genome."}]}, "mullaert j": {"display": "Mullaert J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "muller a": {"display": "Müller A", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1275869", "pmid": "41620544", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Sequencing of stool samples from Ethiopian children from Adama (Ethiopia)"}, {"acc": "PRJNA1345963", "pmid": "41620544", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Sequencing of stool samples from Ethiopian children from Adama (Ethiopia)"}, {"acc": "PRJNA504891", "pmid": "41620544", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA716780", "pmid": "41620544", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "muller dn": {"display": "Müller DN", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}, {"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}]}, "muller ee": {"display": "Muller EE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "25424998", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "26505828", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "muller eel": {"display": "Muller EEL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "28721231", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "29075368", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "muller j": {"display": "Müller J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB49648", "pmid": "39155318", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Neolithic Yersinia pestis infections in humans and a dog"}, {"acc": "PRJEB76913", "pmid": "39881980", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors affecting the gut microbiota composition of children with CHD"}]}, "muller m": {"display": "Müller M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJNA1115039", "pmid": "39673707", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary selective effects manifest in the human gut microbiota from species composition t…"}]}, "muller r": {"display": "Müller R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA880624", "pmid": "38742876", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenomics of single Belgian field mosquitoes."}]}, "muller-esch t": {"display": "Müller-Esch T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "muller-tidow c": {"display": "Müller-Tidow C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "mullins t": {"display": "Mullins T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1185841", "pmid": "40232948", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Buccal swab and saliva rinse samples from pregnant women with and without T2DM - Raw sequ…"}]}, "mullish bh": {"display": "Mullish BH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60914", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Roles of gut microbiota-mediated nutrient competition and metabolite inhibition in the in…"}]}, "mummed b": {"display": "Mummed B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "32351922", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "41185061", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "munch pc": {"display": "Münch PC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}, {"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "mundy m": {"display": "Mundy M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "muniesa m": {"display": "Muniesa M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA590575", "pmid": "32317653", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Bacteriophages in human samples"}]}, "munneke mj": {"display": "Munneke MJ", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1042647", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}]}, "munoz j": {"display": "Muñoz J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "muoebonam eb": {"display": "Muoebonam EB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "mupere e": {"display": "Mupere E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "murai t": {"display": "Murai T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "muramatsu h": {"display": "Muramatsu H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10705", "pmid": "34859110", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Blood microbiome in febrile patients"}]}, "murata k": {"display": "Murata K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB3819", "pmid": "26468217", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Novel probiotic bacteria retrieved from wild rock ptarmigans"}]}, "muratore e": {"display": "Muratore E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA914532", "pmid": "36639555", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "Levofloxacin prophylaxis and parenteral nutrition have a detrimental effect on intestinal…"}]}, "mureyev s": {"display": "Mureyev S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA949528", "pmid": "37308527", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}]}, "murga-garrido sm": {"display": "Murga-Garrido SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA721692", "pmid": "36786619", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "METAGENOMIC ANALYSIS OF MEXICAN CHILDHOOD GUT MICROBIOTA"}]}, "muringattu prabhakaran d": {"display": "Muringattu Prabhakaran D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1252780", "pmid": null, "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Effect of anitbiotic alternatives on cecal microbiome of Salmonella Heidelberg-challenged…"}]}, "murotomi k": {"display": "Murotomi K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "murphy c": {"display": "Murphy C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB72531", "pmid": "38424099", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prebiotic intervention for muscle function and cognition"}]}, "murphy ce": {"display": "Murphy CE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA955235", "pmid": "42262087", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}]}, "murphy pm": {"display": "Murphy PM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "murphy rl": {"display": "Murphy RL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "murphy rs": {"display": "Murphy RS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB7462", "pmid": "25080337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The genomic analysis of an unclutured bacterium IOLA detected from a patient with chronic…"}]}, "murray dm": {"display": "Murray DM", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "murray mj": {"display": "Murray MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726636", "pmid": "35382031", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sea otter (Enhydra lutris) Raw sequence reads"}]}, "murray pr": {"display": "Murray PR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46333", "pmid": "22310478", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "murrell jc": {"display": "Murrell JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522699", "pmid": "31427729", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}]}, "murugan v": {"display": "Murugan V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1090887", "pmid": "39053521", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human adenovirus outbreak at a university campus monitored by wastewater and clinical sur…"}]}, "murugapiran sk": {"display": "Murugapiran SK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA427267", "pmid": "29235710", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pearl River metagenomics Raw sequence reads"}]}, "musaya j": {"display": "Musaya J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1211045", "pmid": "40833797", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Freshwater snail faeces raw sequence reads"}]}, "musco a": {"display": "Muscò A", "group": false, "n_studies": 36, "studies": [{"acc": "PRJDB4525", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics of fecal bacterial consortium inhabiting healthy Asian children"}, {"acc": "PRJEB12669", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB32631", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB41102", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB42363", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB6456", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA215106", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA268964", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA290380", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA300541", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA322188", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA345144", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA422569", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA436562", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489693", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA497734", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA521878", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA549787", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA633576", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA644725", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA686821", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics data from human stool microorganism Raw sequence reads"}, {"acc": "PRJNA688164", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA695570", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA833139", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gender-specific cross-generational microbial persistence of human gut microbes"}, {"acc": "PRJNA991269", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "musicha p": {"display": "Musicha P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63570", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Klebsiella_transmission_and_immunity_on_Chatinkha_nursery__Neo_TRACK_"}]}, "musmeci e": {"display": "Musmeci E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "38047279", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "mussap m": {"display": "Mussap M", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA273761", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}]}, "musser ka": {"display": "Musser KA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445389", "pmid": "30586509", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Sphingomonas koreensis Genome sequencing and assembly"}]}, "mussig aj": {"display": "Mussig AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58634", "pmid": "40707831", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencin…"}]}, "mustanski b": {"display": "Mustanski B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA836336", "pmid": "36179550", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenome of MSM prior to and following HIV seroconversion"}]}, "muszynska a": {"display": "Muszyńska A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "mutasa b": {"display": "Mutasa B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB51728", "pmid": "39341154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "mutasa k": {"display": "Mutasa K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB51728", "pmid": "39341154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "muth t": {"display": "Muth T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB19090", "pmid": "27671352", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}]}, "muth tr": {"display": "Muth TR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "mutlu ea": {"display": "Mutlu EA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB7772", "pmid": "25619688", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}]}, "muto c": {"display": "Muto C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA475137", "pmid": "33245689", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhizopus oryzae Genome sequencing and assembly"}]}, "mutunga m": {"display": "Mutunga M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156362", "pmid": "39319086", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Genomic epidemiology of human adenoviruses"}]}, "muzny dm": {"display": "Muzny DM", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1084251", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tryptophan metabolites in fecal samples from healthy humans"}, {"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "39282326", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1195144", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1224818", "pmid": "38361816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with n…"}]}, "mweene as": {"display": "Mweene AS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB3158", "pmid": "25381053", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shrew fecal metagenome"}]}, "mwinzi p": {"display": "Mwinzi P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "myburgh da": {"display": "Myburgh DA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB66169", "pmid": "41540446", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient DNA study provides clues to leprosy susceptibility in medieval Europe"}]}, "myers a": {"display": "Myers A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1355224", "pmid": "42037384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human metagenomic samples Metagenome"}]}, "myers ca": {"display": "Myers CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA80601", "pmid": "23554892", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterization of the nasopharyngeal virome in patients with influenza-like illness of…"}]}, "myers p": {"display": "Myers P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62690", "pmid": "37513505", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, 5-HMO supplemented formula vs. control formula vs. breastfed"}]}, "myers pn": {"display": "Myers PN", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB84944", "pmid": "40885737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of 56 mother-infant dyads from the ALADDIN birth cohort"}, {"acc": "PRJNA633381", "pmid": "33662387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "IgA deficiency microbiota"}, {"acc": "PRJNA812583", "pmid": "36352460", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level metagenomics reveal microbial transfer from donor to infant after fecal micr…"}]}, "myhrvold c": {"display": "Myhrvold C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA623215", "pmid": "32349121", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing to evaluate massively multiplexed detection with Cas13"}]}, "myles ia": {"display": "Myles IA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417283", "pmid": "38058267", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}]}, "mynewgut consortium": {"display": "MyNewGut consortium", "group": true, "n_studies": 1, "studies": [{"acc": "PRJEB36898", "pmid": "33629506", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics analysis on overweight subjects under a caloric restriction intervention with…"}]}, "myridakis a": {"display": "Myridakis A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "myrmel ls": {"display": "Myrmel LS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64334", "pmid": "38294254", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Multi-omics of host-gut microbiota interactions in healthy and parasitized farmed Atlanti…"}]}, "mysara m": {"display": "Mysara M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685914", "pmid": "33854066", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiota-based markers predictive of development of Clostridioides difficile infection"}]}, "n ferriols vme": {"display": "N Ferriols VME", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": "40631735", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "na x": {"display": "Na X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858926", "pmid": "36687649", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}, {"acc": "PRJNA858926", "pmid": "37771701", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}]}, "naassila m": {"display": "Naassila M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1104421", "pmid": "39078043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Serum Bile Acids profiles are altered without change of the Gut Microbiota composition fo…"}, {"acc": "PRJNA1111312", "pmid": "39895875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun metagenomics reveals Bacteroides stercoris as a fecal biomarker depleted in late-…"}]}, "nabinejad a": {"display": "Nabinejad A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1140720", "pmid": "41565819", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Modelling human microbiome transmission in a nursery setting"}]}, "nabirye se": {"display": "Nabirye SE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}]}, "naccache sn": {"display": "Naccache SN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}]}, "naccarati a": {"display": "Naccarati A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "nadal p": {"display": "Nadal P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "nadeau kc": {"display": "Nadeau KC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "35847562", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "nadimpalli g": {"display": "Nadimpalli G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA774819", "pmid": "35695455", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Highly specialized carbohydrate metabolism capability in Bifidobacterium strain associate…"}]}, "nadimpalli ml": {"display": "Nadimpalli ML", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1138246", "pmid": "40755247", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal metagenomes of Peruvian children"}, {"acc": "PRJNA706606", "pmid": "36416733", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of Water Chlorination of Children's Gut Microbiomes in Bangladesh"}, {"acc": "PRJNA726052", "pmid": "35422497", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Effects of drinking water chlorination on childrens intestinal flora and resistomes in Dh…"}]}, "naeini mk": {"display": "Naeini MK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA957107", "pmid": "38291926", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Imrabiome - Rheumatoid project"}]}, "nagabandi t": {"display": "Nagabandi T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "nagai m": {"display": "Nagai M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB5383", "pmid": "28095784", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of a novel bovine enterovirus possessing highly divergent amino acid seque…"}]}, "nagao k": {"display": "Nagao K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}]}, "nagata k": {"display": "Nagata K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB15907", "pmid": "37621086", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alpha-HPV-targeted sequence for cervical swab specimens"}]}, "nagata n": {"display": "Nagata N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "nagbe t": {"display": "Nagbe T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "nagdeo k": {"display": "Nagdeo K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39640590", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "nagtegaal id": {"display": "Nagtegaal ID", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87602", "pmid": "37243505", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteria in colitis associated cancer development"}]}, "nagy sa": {"display": "Nagy SÁ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644779", "pmid": "33384459", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "yogurt and kefir seed culture sequencing"}]}, "nagy-szakal d": {"display": "Nagy-Szakal D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}]}, "nahid f": {"display": "Nahid F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1262354", "pmid": "41603547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMBARK - Establishing a Monitoring Baseline for Antimicrobial Resistance in Key environme…"}]}, "naidoo d": {"display": "Naidoo D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "naidoo t": {"display": "Naidoo T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9783", "pmid": "26351665", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing Chalcolithic human remains from El Portalón, Spain"}]}, "naila nn": {"display": "Naila NN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}]}, "nair dvt": {"display": "Nair DVT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1252780", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Effect of anitbiotic alternatives on cecal microbiome of Salmonella Heidelberg-challenged…"}]}, "nair r": {"display": "Nair R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "nakagata t": {"display": "Nakagata T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB14457", "pmid": "36363762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of healthy Japanese adult"}]}, "nakagawa s": {"display": "Nakagawa S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB8125", "pmid": "31549291", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metaviromic analyses on crane fecal samples"}]}, "nakagome s": {"display": "Nakagome S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB104199", "pmid": "42531397", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "The genomic identity of early smallpox in South America"}]}, "nakajima a": {"display": "Nakajima A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6456", "pmid": "35768643", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "nakama c": {"display": "Nakama C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1206145", "pmid": "40898384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of the gut microbiome from infants enrolled in a randomized controlled…"}]}, "nakamura s": {"display": "Nakamura S", "group": false, "n_studies": 4, "studies": [{"acc": "PRJDB10675", "pmid": "36376441", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "International collaborative studies on the prevention, diagnosis, and drug discovery for…"}, {"acc": "PRJNA30563", "pmid": "18976571", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High throughput sequence to detect the presence of a pathogenic microbe in a clinical hum…"}, {"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "nakanishi y": {"display": "Nakanishi Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "nakano-narusawa y": {"display": "Nakano-Narusawa Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA694773", "pmid": "33808480", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Inhibitory effects of breast milk-derived Lactobacillus rhamnosus Probio-M9 on colitis-as…"}]}, "nakaoka h": {"display": "Nakaoka H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB15258", "pmid": "38265980", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of 7,000 to 5,500 years old coprolites excavated from the Torihama s…"}, {"acc": "PRJEB15334", "pmid": "32994538", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Radcliffe dental calculus"}]}, "nakashige tg": {"display": "Nakashige TG", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB14383", "pmid": "34551287", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Oral microbiome samples from the Philippines"}, {"acc": "PRJNA275349", "pmid": "34551287", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA48479", "pmid": "34551287", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "nakaya t": {"display": "Nakaya T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA30563", "pmid": "18976571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High throughput sequence to detect the presence of a pathogenic microbe in a clinical hum…"}]}, "nakphaichit m": {"display": "Nakphaichit M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA637175", "pmid": "33668840", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}]}, "nakstad b": {"display": "Nakstad B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29052", "pmid": "30505830", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}]}, "nala r": {"display": "Nalá R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA747761", "pmid": "37938667", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Atlanta, USA and Maputo, Mozambique Children gut microbiome Metagenome"}]}, "nalewajska m": {"display": "Nalewajska M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "nally k": {"display": "Nally K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352475", "pmid": "36420990", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "naltet c": {"display": "Naltet C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "nam mh": {"display": "Nam MH", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45443", "pmid": "35485368", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJEB45443", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJNA979436", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}]}, "namacha g": {"display": "Namacha G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1211045", "pmid": "40833797", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Freshwater snail faeces raw sequence reads"}]}, "namagembe hs": {"display": "Namagembe HS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}]}, "namasivayam s": {"display": "Namasivayam S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445968", "pmid": "28883399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}]}, "namasivyam s": {"display": "Namasivyam S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1280936", "pmid": "41405404", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome of Infants in the Neonatal Intensive Care Unit"}, {"acc": "PRJNA417283", "pmid": "41405404", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA988496", "pmid": "41405404", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}]}, "namkoong h": {"display": "Namkoong H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "namorado s": {"display": "Namorado S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "nan q": {"display": "Nan Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6972", "pmid": "25491920", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The microbial colonization of the intestine during the first monthsof life constitutes th…"}]}, "nandicoori vk": {"display": "Nandicoori VK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "nanri h": {"display": "Nanri H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB14457", "pmid": "36363762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of healthy Japanese adult"}]}, "naoi y": {"display": "Naoi Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB5383", "pmid": "28095784", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of a novel bovine enterovirus possessing highly divergent amino acid seque…"}]}, "napoleone l": {"display": "Napoleone L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}]}, "napravnik tc": {"display": "Napravnik TC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "narasimhan g": {"display": "Narasimhan G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA301903", "pmid": "36748547", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}]}, "narayanasamy s": {"display": "Narayanasamy S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "28721231", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "29075368", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA379120", "pmid": "30504906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}]}, "nardelli c": {"display": "Nardelli C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675110", "pmid": "33659220", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiome signature in COVID-19 positive patients"}]}, "narrowe ab": {"display": "Narrowe AB", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1160256", "pmid": "39919360", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": "40941064", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1456031", "pmid": "42353547", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of selected contaminants on the human gut microbiome tested ex vivo"}, {"acc": "PRJNA1477482", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbial communities developed in vitro compared to the source inoculums"}, {"acc": "PRJNA893635", "pmid": "36361763", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}, {"acc": "PRJNA893635", "pmid": "37297350", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}, {"acc": "PRJNA961974", "pmid": "38236043", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The effects of selected plant extracts on the human gut microbiome"}]}, "narushima s": {"display": "Narushima S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}, {"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "narvaez-rivas m": {"display": "Narvaez-Rivas M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA870588", "pmid": "36843227", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic of preterm infants with cholestasis"}]}, "naslund j": {"display": "Näslund J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA795992", "pmid": "35336963", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenome of potential vectors (ticks, mosquitos, etc.)"}]}, "naspolini n": {"display": "Naspolini N", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "naspolini nf": {"display": "Naspolini NF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1072081", "pmid": "40237336", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Identifying Biomarkers and Trajectories of Typical Neurodevelopment in Children, the BRAI…"}]}, "nassar r": {"display": "Nassar R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA628604", "pmid": "32511695", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}]}, "nastoupil lj": {"display": "Nastoupil LJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "nathani nm": {"display": "Nathani NM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB26614", "pmid": "30412889", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Khambhat"}, {"acc": "PRJEB26614", "pmid": "31754151", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Khambhat"}, {"acc": "PRJEB26615", "pmid": "30412889", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Kutch"}, {"acc": "PRJEB26615", "pmid": "31754151", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Kutch"}]}, "nauer pa": {"display": "Nauer PA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA630822", "pmid": "34732568", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}]}, "naureckas et": {"display": "Naureckas ET", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB20527", "pmid": "26627545", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Corticosteroid therapy and airflow obstruction influence the bronchial microbiome, which…"}]}, "navarrete km": {"display": "Navarrete KM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA268964", "pmid": "27172044", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "27172044", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "navarro f": {"display": "Navarro F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA590575", "pmid": "32317653", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Bacteriophages in human samples"}]}, "navarro-gutierrez z": {"display": "Navarro-Gutierrez Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "navia b": {"display": "Navia B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "navickaite i": {"display": "Navickaite I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "38659981", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "nawrin t": {"display": "Nawrin T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "nay l": {"display": "Nay L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA530252", "pmid": "32631930", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effect of cycled, inhaled tobramycin on the sputum microbiome in cystic fibrosis"}]}, "nayak rr": {"display": "Nayak RR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1420872", "pmid": "41027803", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of gut/stool samples Metagenome"}]}, "nayfach s": {"display": "Nayfach S", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB5224", "pmid": "27803195", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA268964", "pmid": "27803195", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA271618", "pmid": "27803195", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Baboon feces Metagenome"}, {"acc": "PRJNA278393", "pmid": "27803195", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA422434", "pmid": "27803195", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA48479", "pmid": "27803195", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "naymik m": {"display": "Naymik M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA695570", "pmid": "34442687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "nazare ja": {"display": "Nazare JA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB48663", "pmid": "35311446", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Increasing the diversity of dietary fibres in a daily-consumed bread modifies gut microbi…"}, {"acc": "PRJEB76794", "pmid": "39710576", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "nazeen s": {"display": "Nazeen S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "32093762", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "ndao im": {"display": "Ndao IM", "group": false, "n_studies": 7, "studies": [{"acc": "PRJNA1060349", "pmid": "40175737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Weaning accelerates and transforms within-host adaptation in the infant gut microbiome"}, {"acc": "PRJNA301903", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA701982", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic-driven intestinal dysbiosis in paediatric SBS alters microbiome functions and…"}, {"acc": "PRJNA884103", "pmid": "37134153", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}, {"acc": "PRJNA911205", "pmid": "37726348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Psychosocial adversity experienced in utero and early life is associated with variation i…"}]}, "ndela eo": {"display": "Ndela EO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}]}, "ndjite gm": {"display": "Ndjite GM", "group": false, "n_studies": 40, "studies": [{"acc": "PRJEB1220", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB22207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJEB32135", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9576", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA188481", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA221723", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA305507", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA319574", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA322188", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA328899", "pmid": "38172624", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA398089", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA436562", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA485056", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA489090", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA504891", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA510445", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA542703", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA557731", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA633576", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA715601", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA853174", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "nduati r": {"display": "Nduati R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA635738", "pmid": "33727396", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Breast milk Microbiome/Virome of HIV+ Kenyan Women is Not Altered by Immunosuppression"}]}, "nearing jt": {"display": "Nearing JT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29237", "pmid": "30838178", "pos": "first", "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}]}, "nebel a": {"display": "Nebel A", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}, {"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}, {"acc": "PRJEB36413", "pmid": "32884081", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Yersinia pestis strains from Latvia show depletion of the pla virulence gene at the end o…"}, {"acc": "PRJEB41353", "pmid": "33997698", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Mass burial genomics reveals outbreak of enteric paratyphoid fever in the Late Medieval t…"}, {"acc": "PRJEB42185", "pmid": "34192537", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}, {"acc": "PRJEB49648", "pmid": "39155318", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Neolithic Yersinia pestis infections in humans and a dog"}, {"acc": "PRJEB66169", "pmid": "41540446", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient DNA study provides clues to leprosy susceptibility in medieval Europe"}, {"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "neelapu ss": {"display": "Neelapu SS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "neff mj": {"display": "Neff MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA607328", "pmid": "32381611", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Whole-genome sequencing of bacteria, fungi, plants, and metagenomes"}]}, "neff n": {"display": "Neff N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "negussie a": {"display": "Negussie A", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1275869", "pmid": "41620544", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Sequencing of stool samples from Ethiopian children from Adama (Ethiopia)"}, {"acc": "PRJNA1345963", "pmid": "41620544", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Sequencing of stool samples from Ethiopian children from Adama (Ethiopia)"}, {"acc": "PRJNA504891", "pmid": "41620544", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA716780", "pmid": "41620544", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "neher ra": {"display": "Neher RA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "neill fh": {"display": "Neill FH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1195142", "pmid": "39282326", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}]}, "neill j": {"display": "Neill J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}]}, "nekhrizov g": {"display": "Nekhrizov G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}, {"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "nekoui m": {"display": "Nekoui M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "nelson am": {"display": "Nelson AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA856701", "pmid": "36165604", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin microbiome of forehead in children with and without acne"}]}, "nelson c": {"display": "Nelson C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA935534", "pmid": "37700351", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Calf microbiome features associated with susceptibility to C.parvum infection"}]}, "nelson cb": {"display": "Nelson CB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "nelson ce": {"display": "Nelson CE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819194", "pmid": "35606844", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "KRuMBS: Kyphosid Ruminant Microbial Biodigestor of Seaweeds"}]}, "nelson ea": {"display": "Nelson EA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}, {"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "nelson ev": {"display": "Nelson EV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "nelson h": {"display": "Nelson H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA312222", "pmid": "27303377", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genome reconstructions from human gut metagenomes"}, {"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "nelson k": {"display": "Nelson K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA543520", "pmid": "31337807", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}]}, "nelson kc": {"display": "Nelson KC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "nelson ke": {"display": "Nelson KE", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA383868", "pmid": "28910633", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "30482830", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "32409670", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA49397", "pmid": "20962874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Canine gastrointestinal metagenome"}, {"acc": "PRJNA543520", "pmid": "32239170", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA649484", "pmid": "34389536", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "nelson mt": {"display": "Nelson MT", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1015704", "pmid": "40042126", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal and oropharyngeal microbiota from infants with cystic fibrosis on and off beta-lact…"}, {"acc": "PRJNA516442", "pmid": "30784601", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Depletion of human DNA from complex clinical samples for metagenomic sequencing"}, {"acc": "PRJNA530252", "pmid": "32631930", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effect of cycled, inhaled tobramycin on the sputum microbiome in cystic fibrosis"}]}, "nemoto s": {"display": "Nemoto S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "neppl s": {"display": "Neppl S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "nesme j": {"display": "Nesme J", "group": false, "n_studies": 35, "studies": [{"acc": "PRJEB15257", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB32631", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB39223", "pmid": "39138199", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB6456", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA231909", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA272371", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA301903", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA436562", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA524703", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA549787", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA557731", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA698986", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA715601", "pmid": "38730321", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA716780", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA916952", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Stanford's Outcomes Research in Kids (STORK) Virome"}]}, "nessa a": {"display": "Nessa A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB72531", "pmid": "38424099", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prebiotic intervention for muscle function and cognition"}]}, "nessel t": {"display": "Nessel T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "neto es": {"display": "Neto ES", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "netting mj": {"display": "Netting MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819247", "pmid": "36060782", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome Raw sequence reads"}]}, "neu j": {"display": "Neu J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1095378", "pmid": "39373498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic resistance"}, {"acc": "PRJNA46337", "pmid": "28274256", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}]}, "neubauer m": {"display": "Neubauer M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "neufeld jd": {"display": "Neufeld JD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202388", "pmid": "22056233", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}, {"acc": "PRJNA202388", "pmid": "22180823", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}, {"acc": "PRJNA202388", "pmid": "24495694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}, {"acc": "PRJNA202388", "pmid": "24911009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}, {"acc": "PRJNA202388", "pmid": "25028422", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "neulinger sc": {"display": "Neulinger SC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB3085", "pmid": "23236009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}]}, "neuman h": {"display": "Neuman H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "neumann c": {"display": "Neumann C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": "32354144", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": null, "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "neumann cj": {"display": "Neumann CJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37883", "pmid": "36906612", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB77729", "pmid": "39714161", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "First-Year Dynamics of the Microbiome in Infants’ Oral and Gastrointestinal Systems"}]}, "neumayr a": {"display": "Neumayr A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35490", "pmid": "32187006", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tick-Borne Relapsing Fever caused by Borrelia persica in a Traveler returning from Centra…"}]}, "neumeyer s": {"display": "Neumeyer S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "neunhoeffer f": {"display": "Neunhoeffer F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76913", "pmid": "39881980", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors affecting the gut microbiota composition of children with CHD"}]}, "neve myers p": {"display": "Neve Myers P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54991", "pmid": "36211486", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics of infant formula study"}]}, "neves j": {"display": "Neves J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "neves jm": {"display": "Neves JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "neves r": {"display": "Neves R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "new vaccine surveillance network collaborators": {"display": "New Vaccine Surveillance Network Collaborators", "group": true, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "newbold cj": {"display": "Newbold CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA158313", "pmid": "23251564", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Iberian lynx fecal Metagenome"}]}, "newburg ds": {"display": "Newburg DS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA63661", "pmid": "25332767", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA63661", "pmid": "26110908", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "newcombe j": {"display": "Newcombe J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1200893", "pmid": "41809988", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}]}, "newell rjp": {"display": "Newell RJP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1200893", "pmid": "41809988", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}]}, "newgard cb": {"display": "Newgard CB", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB38446", "pmid": "34001614", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiota (16S rDNA sequencing) and microbiome (shotgun sequencing) data of a pig model…"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA145005", "pmid": "22030749", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}]}, "newkirk ce": {"display": "Newkirk CE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1290379", "pmid": "41593042", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool"}]}, "newton dw": {"display": "Newton DW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA660443", "pmid": "34785751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the human gut during enteric infection"}]}, "newton-payne s": {"display": "Newton-Payne S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522699", "pmid": "31427729", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}]}, "neyraud e": {"display": "Neyraud E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60621", "pmid": "37989857", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Is the oral microbiota implicated in taste perception? Investigation of saliva and tongue…"}]}, "neyton l": {"display": "Neyton L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "nezi l": {"display": "Nezi L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "ng c": {"display": "Ng C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA750571", "pmid": "35306253", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Resistome in sewage surviellance"}]}, "ng dzw": {"display": "Ng DZW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}]}, "ng k": {"display": "Ng K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "ng km": {"display": "Ng KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49206", "pmid": "30439937", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}]}, "ng ot": {"display": "Ng OT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA750571", "pmid": "35306253", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Resistome in sewage surviellance"}]}, "ng sc": {"display": "Ng SC", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJNA1031773", "pmid": "41411654", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}, {"acc": "PRJNA353598", "pmid": "28539351", "pos": "last", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA504921", "pmid": "30842211", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA506811", "pmid": "30842211", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "HUMAN GUT RECTAL BACTERIA Metagenome"}, {"acc": "PRJNA644456", "pmid": "33785557", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}, {"acc": "PRJNA715634", "pmid": "34035441", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Novel Strain Level Resolution of Crohns Disease Mucosa-Associated Microbiota via an ex vi…"}, {"acc": "PRJNA876804", "pmid": "36357381", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Human Metagenomic Metagenome"}]}, "ng sss": {"display": "Ng SSS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA876804", "pmid": "36357381", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Human Metagenomic Metagenome"}]}, "ng tf": {"display": "Ng TF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "26893429", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "26966223", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "27927929", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "27932649", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "28302791", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "ng tff": {"display": "Ng TFF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28418726", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "28818890", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "34673119", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "ng wi": {"display": "Ng WI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46333", "pmid": "28679656", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "ng yy": {"display": "Ng YY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "ngao n": {"display": "Ngao N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "ngari m": {"display": "Ngari M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "ngo c": {"display": "Ngo C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "ngo vqh": {"display": "Ngo VQH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46489", "pmid": "35848130", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In situ characterization of the genomic content of viruses of methanogenic archaea in ana…"}]}, "ngowi le": {"display": "Ngowi LE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73590", "pmid": "37111504", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}]}, "ngugi dk": {"display": "Ngugi DK", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA437202", "pmid": "32438323", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Red Sea coral metagenomes"}, {"acc": "PRJNA884026", "pmid": "36724220", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic investigation of lake Issyk-Kul, Kyrgyzstan"}]}, "ngui km": {"display": "Ngui KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}]}, "nguyen a": {"display": "Nguyen A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44108", "pmid": "37065965", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A bone of contention"}]}, "nguyen d": {"display": "Nguyen D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "nguyen dt": {"display": "Nguyen DT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52295", "pmid": "38117587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Precocious infant gut microbiome reprograms enterocytes and promotes childhood obesity ri…"}]}, "nguyen hdt": {"display": "Nguyen HDT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11419", "pmid": "38188664", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}]}, "nguyen lh": {"display": "Nguyen LH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "nguyen m": {"display": "Nguyen M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA630999", "pmid": "33665175", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}]}, "nguyen mh": {"display": "Nguyen MH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA475137", "pmid": "33245689", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhizopus oryzae Genome sequencing and assembly"}]}, "nguyen mt": {"display": "Nguyen MT", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA390646", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA633576", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}]}, "nguyen n": {"display": "Nguyen N", "group": false, "n_studies": 17, "studies": [{"acc": "PRJEB15633", "pmid": "35406036", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJEB6456", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA273761", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA384716", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA473126", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA63661", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "nguyen nd": {"display": "Nguyen ND", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA789782", "pmid": "34970712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of bat coronaviruses from Eswatini"}]}, "nguyen qp": {"display": "Nguyen QP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "34454437", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35568730", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "nguyen t": {"display": "Nguyen T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29554870", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "nguyen tg": {"display": "Nguyen TG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA623215", "pmid": "32349121", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing to evaluate massively multiplexed detection with Cas13"}]}, "nguyen th": {"display": "Nguyen TH", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1148079", "pmid": "39756219", "pos": "last", "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "NGS metagenomic libraries with or without CRISPR-Cas9 modification for ARG enrichment"}, {"acc": "PRJNA483343", "pmid": "30305736", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "nguyen tv": {"display": "Nguyen TV", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1066815", "pmid": "38963827", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human rhinovirus A, B and C in Washington State"}, {"acc": "PRJNA723895", "pmid": "38963827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Rhinovirus NGS"}, {"acc": "PRJNA907066", "pmid": "36878012", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human respiratory syncytial virus Genome sequencing"}]}, "nguyen wnt": {"display": "Nguyen WNT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1055141", "pmid": "42336834", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool shallow shotgun sequencing (ANTIBIO)"}]}, "nguyen-dinh t": {"display": "Nguyen-Dinh T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "nguyen-khac e": {"display": "Nguyen-Khac E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1104421", "pmid": "39078043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Serum Bile Acids profiles are altered without change of the Gut Microbiota composition fo…"}, {"acc": "PRJNA1111312", "pmid": "39895875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun metagenomics reveals Bacteroides stercoris as a fecal biomarker depleted in late-…"}]}, "ngwese mm": {"display": "Ngwese MM", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46788", "pmid": "41358671", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB86954", "pmid": "41358671", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Integrating Metagenomics for Helminth Detection"}, {"acc": "PRJNA48479", "pmid": "41358671", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "nhu ntk": {"display": "Nhu NTK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893826", "pmid": "38622998", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Culture-independent long read metagenomic diagnostics for genomic surveillance and infect…"}]}, "ni j": {"display": "Ni J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "ni lochlainn m": {"display": "Ni Lochlainn M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB72531", "pmid": "38424099", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prebiotic intervention for muscle function and cognition"}]}, "ni y": {"display": "Ni Y", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA605028", "pmid": "38263861", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Genome sequencing and assembly"}, {"acc": "PRJNA626477", "pmid": "34002024", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut microbiota Raw sequence reads with and without cancer cachexia"}, {"acc": "PRJNA703757", "pmid": "37673036", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}, {"acc": "PRJNA728908", "pmid": "35675435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of baseline individuals in a 4.6-year non-alcoholic fatty liver disease pr…"}]}, "ni yg": {"display": "Ni YG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "ni yh": {"display": "Ni YH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1056831", "pmid": "39006502", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota of infant cholestasis in Taiwan"}]}, "niazi f": {"display": "Niazi F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA43253", "pmid": "20363958", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human fecal microbiome"}]}, "nichol ac": {"display": "Nichol AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1261853", "pmid": "38816345", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia sp. CA6269 genome sequencing from clinical and environmental samples"}]}, "nichols d": {"display": "Nichols D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177516", "pmid": "40483244", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Changes in Fecal Microbiota in Adults with Cystic Fibrosis with 6 Months of CFTR Modulato…"}]}, "nichols j": {"display": "Nichols J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "nichols kb": {"display": "Nichols KB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "nicholson mr": {"display": "Nicholson MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "nickel b": {"display": "Nickel B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35490", "pmid": "32187006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tick-Borne Relapsing Fever caused by Borrelia persica in a Traveler returning from Centra…"}]}, "nicklisch n": {"display": "Nicklisch N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}]}, "nicol mp": {"display": "Nicol MP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37312", "pmid": "33072693", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "The utility of shotgun metagenomics to investigate the carriage of, and longitudinal chan…"}]}, "nicolini f": {"display": "Nicolini F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA60545", "pmid": "24706600", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes isolated from NE Brazil"}]}, "nie y": {"display": "Nie Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1464060", "pmid": "42293186", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Efficacy of Bifidobacterium lactis BLa80 in Preventing Early Childhood Eczema and Respira…"}]}, "niederdorfer r": {"display": "Niederdorfer R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675607", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Biogeochemistry study on Lake Tanganyika in Tanzania"}]}, "niederhuber je": {"display": "Niederhuber JE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417283", "pmid": "29988506", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}]}, "nielsen ds": {"display": "Nielsen DS", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB46943", "pmid": "35181661", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "37037943", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40396485", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "41387423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA1094595", "pmid": "39449043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "SSLR"}, {"acc": "PRJNA715601", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA926386", "pmid": "37635262", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Phagestorage"}]}, "nielsen hb": {"display": "Nielsen HB", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB42539", "pmid": "34756056", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "FUT2/FUT3 genes sequences and nasopharyngeal shotgun metagenomics from the Microbiota and…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA312222", "pmid": "27303377", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genome reconstructions from human gut metagenomes"}, {"acc": "PRJNA633381", "pmid": "33662387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "IgA deficiency microbiota"}, {"acc": "PRJNA728908", "pmid": "35675435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of baseline individuals in a 4.6-year non-alcoholic fatty liver disease pr…"}, {"acc": "PRJNA812583", "pmid": "36352460", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level metagenomics reveal microbial transfer from donor to infant after fecal micr…"}]}, "nielsen hs": {"display": "Nielsen HS", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37731", "pmid": "33816334", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "35553675", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "39015337", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "39160615", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "42203854", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB38528", "pmid": "42203854", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}]}, "nielsen ib": {"display": "Nielsen IB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "37230981", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "nielsen j": {"display": "Nielsen J", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}, {"acc": "PRJEB6456", "pmid": "33753486", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "nielsen lk": {"display": "Nielsen LK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA313232", "pmid": "27388460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteroidales group S24-7 population genome recovery"}]}, "nielsen lp": {"display": "Nielsen LP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12636", "pmid": "26818667", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of P. acnes levels in NGS data from cancer samples"}]}, "nielsen n": {"display": "Nielsen N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "nielsen ph": {"display": "Nielsen PH", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52550", "pmid": "36697964", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of samples suspected of featuring cable bacteria genomic DNA with s…"}, {"acc": "PRJEB58634", "pmid": "40707831", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencin…"}]}, "nielsen r": {"display": "Nielsen R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "nielsen t": {"display": "Nielsen T", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}]}, "nielsen td": {"display": "Nielsen TD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB50688", "pmid": "35972375", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sequencing read data for Danish soil samples"}]}, "nierman wc": {"display": "Nierman WC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37312", "pmid": "33072693", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "The utility of shotgun metagenomics to investigate the carriage of, and longitudinal chan…"}, {"acc": "PRJNA475137", "pmid": "33245689", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhizopus oryzae Genome sequencing and assembly"}]}, "nieselt k": {"display": "Nieselt K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "nieto pa": {"display": "Nieto PA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1206145", "pmid": "40898384", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of the gut microbiome from infants enrolled in a randomized controlled…"}]}, "nieuwdorp m": {"display": "Nieuwdorp M", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB12357", "pmid": "27126044", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB46778", "pmid": "27126044", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}, {"acc": "PRJEB46778", "pmid": "28978426", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}, {"acc": "PRJEB46779", "pmid": "29566738", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Extended-Spectrum Beta Lactamase Carriers."}, {"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}, {"acc": "PRJNA499081", "pmid": "33794724", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}]}, "nih intramural sequencing center comparative sequencing program": {"display": "NIH Intramural Sequencing Center Comparative Sequencing Program", "group": true, "n_studies": 1, "studies": [{"acc": "PRJNA46333", "pmid": "23698366", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "nii t": {"display": "Nii T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "niiya a": {"display": "Niiya A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB15907", "pmid": "37621086", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alpha-HPV-targeted sequence for cervical swab specimens"}]}, "nilsson a": {"display": "Nilsson A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB127029", "pmid": "26552345", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abun…"}, {"acc": "PRJEB64634", "pmid": "32067542", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Fatal encephalitis associated with coronavirus OC43 in an immunocompromised child"}]}, "nimeus e": {"display": "Niméus E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}]}, "nimitphong h": {"display": "Nimitphong H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA766776", "pmid": "35909623", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut Microbiome in HIV patients"}]}, "ning j": {"display": "Ning J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1067813", "pmid": "39731916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C. difficile-associated mouse and human fecal metagenomes"}, {"acc": "PRJNA945408", "pmid": "38085102", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prev…"}]}, "nipper study group": {"display": "NiPPeR Study Group", "group": true, "n_studies": 1, "studies": [{"acc": "PRJNA707065", "pmid": "35075183", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "NiPPeR Study - pilot microbiome investigation"}]}, "nisc comparative sequence program": {"display": "NISC Comparative Sequence Program", "group": true, "n_studies": 1, "studies": [{"acc": "PRJNA46333", "pmid": "22310478", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "nisc comparative sequencing program": {"display": "NISC Comparative Sequencing Program", "group": true, "n_studies": 7, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}, {"acc": "PRJNA1369410", "pmid": "42242497", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics sequencing from patients with CD4 lymphopenia"}, {"acc": "PRJNA46333", "pmid": "24170601", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "25279917", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "28679656", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "37054678", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA471898", "pmid": "30397357", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The skin microbiome of DOCK8-deficient patients"}, {"acc": "PRJNA604820", "pmid": "34936382", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin metagenome from antibiotics treated healthy human subjects"}, {"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "nishan k": {"display": "Nishan K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019500", "pmid": "39054413", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}]}, "nishijima s": {"display": "Nishijima S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJDB8956", "pmid": "34586399", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An efficient and accurate reconstruction of the full-length phage genomes by chimera-free…"}, {"acc": "PRJNA362284", "pmid": "31455406", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "nishikawa h": {"display": "Nishikawa H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "nishimura l": {"display": "Nishimura L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB15258", "pmid": "38265980", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of 7,000 to 5,500 years old coprolites excavated from the Torihama s…"}, {"acc": "PRJEB15334", "pmid": "32994538", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Radcliffe dental calculus"}]}, "nishimura y": {"display": "Nishimura Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10879", "pmid": "36722950", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Seasonal dynamics of prokaryotes and viruses in Osaka bay"}]}, "nishiyama k": {"display": "Nishiyama K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "nissen jn": {"display": "Nissen JN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46943", "pmid": "35181661", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}]}, "nitert md": {"display": "Nitert MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1185841", "pmid": "40232948", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Buccal swab and saliva rinse samples from pregnant women with and without T2DM - Raw sequ…"}]}, "nittono h": {"display": "Nittono H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "niu j": {"display": "Niu J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB59277", "pmid": "37009508", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "PICU mngs PCP"}, {"acc": "PRJEB73551", "pmid": "38912204", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "PICU cases"}]}, "niu m": {"display": "Niu M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB108038", "pmid": "41834868", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Jaundice and the Infant Gut Microbiome: An Integrated Shotgun Metagenomics and B…"}]}, "niu x": {"display": "Niu X", "group": false, "n_studies": 41, "studies": [{"acc": "PRJEB24006", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB27928", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB32631", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "38424077", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB36820", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB6456", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9524", "pmid": "38424077", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Expanded Enteric Virome and Altered Bacterial Microbiome in Acquired Immunodeficiency Syn…"}, {"acc": "PRJNA272371", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA301903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA385126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA387903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Intestinal Virome Changes Precede Autoimmunity in Type I Diabetes Susceptible Children"}, {"acc": "PRJNA390646", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA407341", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA436562", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA446038", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA491626", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut virome of Cameroonians living in close proximity with bats"}, {"acc": "PRJNA521878", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA545408", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Longitudinal study of the human gut virome"}, {"acc": "PRJNA555020", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA562766", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA657818", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}]}, "niu y": {"display": "Niu Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961946", "pmid": "37386612", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Human Genome sequencing and assembly"}]}, "nix wa": {"display": "Nix WA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "26893429", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "27932649", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "28369502", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "njamnshi ak": {"display": "Njamnshi AK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1088476", "pmid": "40321713", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Cameroonian blackflies (Diptera: Simuliidae) harbour a plethora of (RNA) viruses"}]}, "njunge jm": {"display": "Njunge JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "nkurunungi jb": {"display": "Nkurunungi JB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573108", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Sedimentary DNA from Mubwindi Swamp"}]}, "no d": {"display": "No D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA259179", "pmid": "25337874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Studies of intestinal microbiome and infection resistance"}, {"acc": "PRJNA338014", "pmid": "29668933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "nocca d": {"display": "Nocca D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36461", "pmid": "32360114", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Laparoscopic Roux-en-Y gastric bypass and sleeve gastrectomy on gut microbiota:…"}]}, "nocini r": {"display": "Nocini R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB67641", "pmid": "38709303", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental Plaque Microbiota Sequence Counts for Microbial Profiling and Resistance Genes Det…"}]}, "noecker c": {"display": "Noecker C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "noell se": {"display": "Noell SE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA431961", "pmid": "39696719", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Geothermal fumarole subsurface microbial communities from Mt. Erebus, Antarctica"}]}, "noguchi s": {"display": "Noguchi S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB7462", "pmid": "25080337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The genomic analysis of an unclutured bacterium IOLA detected from a patient with chronic…"}]}, "nohomovich b": {"display": "Nohomovich B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA660443", "pmid": "34785751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the human gut during enteric infection"}]}, "nol bernardino p": {"display": "Nol Bernardino P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "41118772", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "nolan zt": {"display": "Nolan ZT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA856701", "pmid": "36165604", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin microbiome of forehead in children with and without acne"}]}, "noll s": {"display": "Noll S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1252780", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Effect of anitbiotic alternatives on cecal microbiome of Salmonella Heidelberg-challenged…"}]}, "nomicos e": {"display": "Nomicos E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46333", "pmid": "22310478", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "23698366", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "nomura m": {"display": "Nomura M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "nooij s": {"display": "Nooij S", "group": false, "n_studies": 12, "studies": [{"acc": "PRJDB4176", "pmid": "39885121", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1690", "pmid": "39885121", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB21528", "pmid": "39885121", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB22893", "pmid": "39885121", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome impacts response to PD-1 immunotherapy in melanoma patients"}, {"acc": "PRJEB27005", "pmid": "39885121", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB39223", "pmid": "39885121", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB44119", "pmid": "35659906", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut colonisation by extended-spectrum β-lactamase-producing Escherichia coli and its asso…"}, {"acc": "PRJEB44737", "pmid": "34126062", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB44737", "pmid": "39885121", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJNA1071720", "pmid": "38572716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FECBUD Study Fecal Metagenomes"}, {"acc": "PRJNA231909", "pmid": "39885121", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "39885121", "pos": "first", "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA48479", "pmid": "39885121", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "noordzij ht": {"display": "Noordzij HT", "group": false, "n_studies": 12, "studies": [{"acc": "PRJEB32631", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB51728", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB6456", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1085219", "pmid": "39134593", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance gene dynamics in the commensal infant gut microbiome over the first…"}, {"acc": "PRJNA322188", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA352475", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA473126", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA549787", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA595749", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}, {"acc": "PRJNA898628", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "PINGU Fecal samples Metagenome"}]}, "norata gd": {"display": "Norata GD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA615842", "pmid": "33494335", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}]}, "norberg p": {"display": "Norberg P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28287142", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "norberto s": {"display": "Norberto S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA894691", "pmid": "37082122", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Maternal exposure to air pollution changes gut microbiota in mice"}]}, "nordahl petersen t": {"display": "Nordahl Petersen T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12466", "pmid": "26161690", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Meta-genomic analysis of toilet waste from long distance flights"}]}, "nordstrand n": {"display": "Nordstrand N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}, {"acc": "PRJEB59861", "pmid": "31678062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "nores r": {"display": "Nores R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "norfield m": {"display": "Norfield M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1279254", "pmid": "41562608", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of synovial joint fluid collected from feedlot cattle. Raw sequenc…"}]}, "nori src": {"display": "Nori SRC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "37230981", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJEB48251", "pmid": "40755225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "norman a": {"display": "Norman A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA81851", "pmid": "23853523", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Hypersaline Lake Metagenome"}]}, "norman jm": {"display": "Norman JM", "group": false, "n_studies": 16, "studies": [{"acc": "PRJDB4176", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1690", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB21528", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB22893", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome impacts response to PD-1 immunotherapy in melanoma patients"}, {"acc": "PRJEB27005", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB39223", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB44737", "pmid": "34126062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB44737", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB7772", "pmid": "25619688", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}, {"acc": "PRJNA1071720", "pmid": "38572716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FECBUD Study Fecal Metagenomes"}, {"acc": "PRJNA1121316", "pmid": "37060545", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}, {"acc": "PRJNA1121316", "pmid": "39747680", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}, {"acc": "PRJNA1463324", "pmid": "41342324", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "VE202 phase 1 stool metagenomes"}, {"acc": "PRJNA231909", "pmid": "39885121", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "39885121", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA48479", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA755324", "pmid": "35421353", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}, {"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "norman s": {"display": "Norman S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA772730", "pmid": "35071138", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The FOUNDATION Study: Hospital Formulation Of B. infantis EVC001 Utilized In The NICU To…"}]}, "north j": {"display": "North J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59994", "pmid": "37892187", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evaluation of an Adapted Semi-Automated DNA Extraction for Human Salivary Shotgun Metagen…"}]}, "norton je": {"display": "Norton JE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961698", "pmid": "37610205", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Very Early Life Microbiome and Metabolome Correlates with Primary Vaccination Variability…"}]}, "norton r": {"display": "Norton R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA751712", "pmid": "35345612", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "To Probiotic or not to probiotic: using metagenomics to compare the gut microbiome of inf…"}, {"acc": "PRJNA751712", "pmid": "35796792", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "To Probiotic or not to probiotic: using metagenomics to compare the gut microbiome of inf…"}]}, "nos p": {"display": "Nos P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB3206", "pmid": "23760301", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of the viral and microbial metagenomes associated with the Crohn's disease"}]}, "nosamiefan i": {"display": "Nosamiefan I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "nosrat b": {"display": "Nosrat B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA80601", "pmid": "23554892", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterization of the nasopharyngeal virome in patients with influenza-like illness of…"}]}, "not f": {"display": "Not F", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "notarangelo ld": {"display": "Notarangelo LD", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}, {"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "nothias l-f": {"display": "Nothias L-F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1013332", "pmid": "38206014", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Scalp microbiome study"}]}, "noto a": {"display": "Noto A", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA273761", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}]}, "nouvenne a": {"display": "Nouvenne A", "group": false, "n_studies": 73, "studies": [{"acc": "PRJEB10878", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB1220", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB26795", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB27005", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27928", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB29052", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29127", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB30834", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB33098", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB38528", "pmid": "38441032", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB39610", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB41102", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB46788", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB6070", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB7774", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJNA1046438", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA268964", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA289586", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA290380", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA307231", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA327106", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA345144", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA360177", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA379120", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA380118", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA386422", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA392180", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA397112", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA400072", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA401385", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA422434", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA431482", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA438847", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA445968", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA449784", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA503909", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA521587", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA527208", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA529124", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA531203", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA542703", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA547591", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA549787", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA553191", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA562600", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Multi-omic analysis of Clostridioides difficile infection and response to therapy in pedi…"}, {"acc": "PRJNA588513", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA624223", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624763", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA633576", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA644725", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA658422", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "gut microbiome shifts associated with Henoch-Schonlein purpura"}, {"acc": "PRJNA679346", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA687536", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA688164", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688274", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA695570", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA714678", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA752006", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing to Examine the Gut Microbiome in Konzo"}, {"acc": "PRJNA772518", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA975734", "pmid": "37728335", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Disentangling the interactions between nasopharyngeal and gut microbiome and their involv…"}]}, "novela v": {"display": "Novela V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "novikova pv": {"display": "Novikova PV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782492", "pmid": "40707492", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MiBiPa - Non-invasive microbiome-derived multi-omic biomarkers for the early-stage detect…"}]}, "nowak c": {"display": "Nowak C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "noya-alarcon o": {"display": "Noya-Alarcón Ó", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}]}, "ntozini r": {"display": "Ntozini R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB51728", "pmid": "39341154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "nuncio ms": {"display": "Núncio MS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "nuncio s": {"display": "Núncio S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "35750157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "36131032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "nunes a": {"display": "Nunes A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "35750157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "36131032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "nunes felippe pa": {"display": "Nunes Felippe PA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA613851", "pmid": "38091183", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "INVESTIGATION OF THE BACTERIAL AND VIRAL DIVERSITY OF DIDELPHID OPOSSUMS FROM BRAZILIAN F…"}]}, "nunez h": {"display": "Nunez H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1222487", "pmid": "42293161", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome signatures and reduced Faecalibacterium and Roseburia in infants with earl…"}]}, "nunez-sanchez ma": {"display": "Núñez-Sánchez MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352475", "pmid": "36420990", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "nunoura t": {"display": "Nunoura T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB3979", "pmid": "26877136", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of the RNA viral communities in a diatom colony"}]}, "nyangahu dd": {"display": "Nyangahu DD", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1143669", "pmid": "39707483", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of neonates exposed to HIV"}, {"acc": "PRJNA526942", "pmid": "33137401", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "uncultured crAssphage strain:ZA | isolates :M186D4, C0521BW15,C0526BW15, C0521BD4, and C0…"}]}, "nyboe andersen a": {"display": "Nyboe Andersen A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37731", "pmid": "35553675", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}]}, "nychas e": {"display": "Nychas E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}, {"acc": "PRJNA728908", "pmid": "35675435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of baseline individuals in a 4.6-year non-alcoholic fatty liver disease pr…"}]}, "nydegger t": {"display": "Nydegger T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA706606", "pmid": "36416733", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of Water Chlorination of Children's Gut Microbiomes in Bangladesh"}]}, "nyenswah t": {"display": "Nyenswah T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "nyilima s": {"display": "Nyilima S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52748", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome function and composition in infants from rural Kenya and association with…"}, {"acc": "PRJEB6456", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "o'brien e": {"display": "O'Brien E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "39365058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "o'brien ks": {"display": "O'Brien KS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "o'callaghan km": {"display": "O'Callaghan KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "o'connell ae": {"display": "O'Connell AE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA797011", "pmid": "35707545", "pos": "last", "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "T cell receptor repertoire in premature infants"}]}, "o'connell em": {"display": "O'Connell EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156457", "pmid": "39731681", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acanthamoeba sequencing"}]}, "o'connor t": {"display": "O'Connor T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "38782975", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB46659", "pmid": "41265504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "o'connor tg": {"display": "O'Connor TG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "o'donnell d": {"display": "O'Donnell D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38446", "pmid": "34001614", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiota (16S rDNA sequencing) and microbiome (shotgun sequencing) data of a pig model…"}]}, "o'driscoll m": {"display": "O'Driscoll M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "o'ferrall am": {"display": "O'Ferrall AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1211045", "pmid": "40833797", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Freshwater snail faeces raw sequence reads"}]}, "o'flaherty r": {"display": "O'Flaherty R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "37230981", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJEB48251", "pmid": "39365058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "o'grady j": {"display": "O'Grady J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA722408", "pmid": "36076058", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}]}, "o'halloran e": {"display": "O'Halloran E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "o'hara m": {"display": "O'Hara M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "o'herlihy e": {"display": "O'Herlihy E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42304", "pmid": "31843589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differences in Fecal Microbiomes and Metabolomes of People With vs Without Irritable Bowe…"}]}, "o'laughlin b": {"display": "O'Laughlin B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417283", "pmid": "38058267", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}]}, "o'malley ma": {"display": "O'Malley MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1023249", "pmid": "38881311", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "cultivated microbial species from anaerobic digester sludge and goat feces"}]}, "o'mathuna d": {"display": "O'Mathúna D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "33042218", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "o'mullan gd": {"display": "O'Mullan GD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "o'neil d": {"display": "O'Neil D", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "o'neill i": {"display": "O'Neill I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA63661", "pmid": "32436839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "o'neill ij": {"display": "O'Neill IJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "37230981", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "o'shea ca": {"display": "O'Shea CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA971895", "pmid": "38310316", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Resismet"}]}, "o'sullivan jm": {"display": "O'Sullivan JM", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA637785", "pmid": "33346848", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA637785", "pmid": "33985595", "pos": "last", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA648487", "pmid": "33732655", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA701480", "pmid": "34186487", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vaginal seeding in babies born by caesarean section (ECOBABe trial) - shotgun metagenomic…"}, {"acc": "PRJNA707065", "pmid": "35075183", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "NiPPeR Study - pilot microbiome investigation"}]}, "o'sullivan mvn": {"display": "O'Sullivan MVN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "o'sullivan n": {"display": "O'Sullivan N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}]}, "o'toole ga": {"display": "O'Toole GA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1078280", "pmid": "38405928", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Quantifying forms and functions of intestinal bile acid pools in mice"}, {"acc": "PRJNA955235", "pmid": "39945545", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}, {"acc": "PRJNA955235", "pmid": "42262087", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}]}, "o'toole pw": {"display": "O'Toole PW", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB42304", "pmid": "31843589", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differences in Fecal Microbiomes and Metabolomes of People With vs Without Irritable Bowe…"}, {"acc": "PRJNA300541", "pmid": "37118093", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "oakeley ej": {"display": "Oakeley EJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "oakeson kf": {"display": "Oakeson KF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA315636", "pmid": "26896138", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Neotoma albigula fecal microbial communities Targeted Locus (Loci)"}]}, "oba m": {"display": "Oba M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB5383", "pmid": "28095784", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of a novel bovine enterovirus possessing highly divergent amino acid seque…"}]}, "oberste ms": {"display": "Oberste MS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "26893429", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "27927929", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "28302791", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "28369502", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "28818890", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "obregon-tito aj": {"display": "Obregon-Tito AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}]}, "oca cg": {"display": "Oca CG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA630999", "pmid": "33665175", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}]}, "ocampo-diaz yze": {"display": "Ocampo-Díaz YZE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "ochieng jb": {"display": "Ochieng JB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "ochoa tj": {"display": "Ochoa TJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA802048", "pmid": "37882571", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Insights into the infant gut microbiome composition after bovine lactoferrin oral adminis…"}]}, "ochoa-leyva a": {"display": "Ochoa-Leyva A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA721692", "pmid": "36786619", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "METAGENOMIC ANALYSIS OF MEXICAN CHILDHOOD GUT MICROBIOTA"}]}, "odamaki t": {"display": "Odamaki T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6456", "pmid": "35768643", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "odeh r": {"display": "Odeh R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445932", "pmid": "29297933", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA445932", "pmid": "30121305", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}]}, "odermatt d": {"display": "Odermatt D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675607", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Biogeochemistry study on Lake Tanganyika in Tanzania"}]}, "odia i": {"display": "Odia I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "odiere mr": {"display": "Odiere MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "odle j": {"display": "Odle J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38446", "pmid": "34001614", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiota (16S rDNA sequencing) and microbiome (shotgun sequencing) data of a pig model…"}]}, "odrzywolek k": {"display": "Odrzywolek K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA290380", "pmid": "30894435", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "oduaran oh": {"display": "Oduaran OH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "oefner pj": {"display": "Oefner PJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}]}, "oertel wh": {"display": "Oertel WH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA381395", "pmid": "28843021", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut and nasal microbiome in Parkinson''s disease"}]}, "oestereich l": {"display": "Oestereich L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "ofek shlomai n": {"display": "Ofek Shlomai N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1312123", "pmid": "41203618", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Development of the preterm infant gut and gastric residuals microbiome"}]}, "ofordile o": {"display": "Ofordile O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28671", "pmid": "41387413", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A_novel_nano_iron_supplement__IHAT__to_safely_combact_iron_deficiency_and_anemia"}]}, "ofran a": {"display": "Ofran A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991320", "pmid": "37794974", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Depression in older adults"}]}, "ogata h": {"display": "Ogata H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10879", "pmid": "36722950", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Seasonal dynamics of prokaryotes and viruses in Osaka bay"}]}, "ogawa k": {"display": "Ogawa K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "ogawa m": {"display": "Ogawa M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB15258", "pmid": "38265980", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of 7,000 to 5,500 years old coprolites excavated from the Torihama s…"}, {"acc": "PRJDB7462", "pmid": "25080337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The genomic analysis of an unclutured bacterium IOLA detected from a patient with chronic…"}]}, "ogawa-haruki n": {"display": "Ogawa-Haruki N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10879", "pmid": "36722950", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Seasonal dynamics of prokaryotes and viruses in Osaka bay"}]}, "ogayo er": {"display": "Ogayo ER", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1295573", "pmid": "41760690", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The intestinal microbiome of patients with newly diagnosed invasive breast cancer and duc…"}]}, "ogbaini-emovon e": {"display": "Ogbaini-Emovon E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "ogi t": {"display": "Ogi T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB10705", "pmid": "34859110", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Blood microbiome in febrile patients"}, {"acc": "PRJDB10711", "pmid": "34090359", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics for pathogens detection from patients with fever of unknown origin"}]}, "ogimi c": {"display": "Ogimi C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28838146", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "ogulur i": {"display": "Ogulur I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "ogunbiyi ts": {"display": "Ogunbiyi TS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73590", "pmid": "38003822", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}]}, "ogungbola o": {"display": "Ogungbola O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "oguro-igashira e": {"display": "Oguro-Igashira E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "oguttu d": {"display": "Oguttu D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1211045", "pmid": "40833797", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Freshwater snail faeces raw sequence reads"}]}, "oguzie ju": {"display": "Oguzie JU", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "oh j": {"display": "Oh J", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1040852", "pmid": "37350224", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CHAN skin Metagenome"}, {"acc": "PRJNA46333", "pmid": "22310478", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "23050952", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "23698366", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "24170601", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "25279917", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA558989", "pmid": "32004459", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomics of Staphylococcus epidermidis and contextual metagenome"}, {"acc": "PRJNA595966", "pmid": "30442907", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C57BL6_NSG_humanFMT"}]}, "oh pl": {"display": "Oh PL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}]}, "oh s": {"display": "Oh S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA272371", "pmid": "29049378", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}]}, "ohara o": {"display": "Ohara O", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}, {"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "ohman l": {"display": "Öhman L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB34992", "pmid": "33771219", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet and gut microbiome interactions of relevance for symptoms in irritable bowel syndrome"}]}, "ohno h": {"display": "Ohno H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "ohshima s": {"display": "Ohshima S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "ohsugi m": {"display": "Ohsugi M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "ohue m": {"display": "Ohue M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11203", "pmid": "34069916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Taxonomic and gene category analysis of subgingival plaques with and without periodontal…"}]}, "oikonomou g": {"display": "Oikonomou G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA935534", "pmid": "37700351", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Calf microbiome features associated with susceptibility to C.parvum infection"}]}, "ojeda a": {"display": "Ojeda A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1095378", "pmid": "39373498", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic resistance"}, {"acc": "PRJNA843963", "pmid": "41185061", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "ojee e": {"display": "Ojee E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1045584", "pmid": "39185682", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of SARS-CoV-2 in stool sample from women living with HIV and HIV-negative women an…"}, {"acc": "PRJNA635738", "pmid": "33727396", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Breast milk Microbiome/Virome of HIV+ Kenyan Women is Not Altered by Immunosuppression"}]}, "ojesina ai": {"display": "Ojesina AI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "ojima mn": {"display": "Ojima MN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6456", "pmid": "35768643", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "oka s": {"display": "Oka S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "okada y": {"display": "Okada Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "okamoto k": {"display": "Okamoto K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10675", "pmid": "36376441", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "International collaborative studies on the prevention, diagnosis, and drug discovery for…"}]}, "okamoto s": {"display": "Okamoto S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "okamoto-shibayama k": {"display": "Okamoto-Shibayama K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11203", "pmid": "34069916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Taxonomic and gene category analysis of subgingival plaques with and without periodontal…"}]}, "okamura y": {"display": "Okamura Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "okazaki-terashima s": {"display": "Okazaki-Terashima S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB5383", "pmid": "28095784", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of a novel bovine enterovirus possessing highly divergent amino acid seque…"}]}, "okhuysen pc": {"display": "Okhuysen PC", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1084251", "pmid": null, "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tryptophan metabolites in fecal samples from healthy humans"}, {"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "oki k": {"display": "Oki K", "group": false, "n_studies": 11, "studies": [{"acc": "PRJDB4176", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB17632", "pmid": "37188713", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Subspecies in the global human gut microbiome"}, {"acc": "PRJEB6070", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6456", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB7774", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJNA217052", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Fiji COMP"}, {"acc": "PRJNA268964", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA290380", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA485056", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}]}, "okin d": {"display": "Okin D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "okogbenin s": {"display": "Okogbenin S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "okokhere po": {"display": "Okokhere PO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "okonofua g": {"display": "Okonofua G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "okuda s": {"display": "Okuda S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "okumura t": {"display": "Okumura T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB10705", "pmid": "34859110", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Blood microbiome in febrile patients"}, {"acc": "PRJDB10711", "pmid": "34090359", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics for pathogens detection from patients with fever of unknown origin"}]}, "okuno t": {"display": "Okuno T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "olah c": {"display": "Oláh C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA885840", "pmid": "38151716", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Superfoods Raw data"}]}, "olalde i": {"display": "Olalde I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43276", "pmid": "34527890", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Salmonella enterica from a soldier from the 1652-siege of Barcelona (Spain) supports hist…"}]}, "olaleye m": {"display": "Olaleye M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273078", "pmid": null, "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Noma oral microbiome raw sequence reads"}]}, "olanipekun mt": {"display": "Olanipekun MT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "olbertz dm": {"display": "Olbertz DM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "olcina m": {"display": "Olcina M", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB6456", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "olde damink swm": {"display": "Olde Damink SWM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "oldenburg ce": {"display": "Oldenburg CE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "oldham j": {"display": "Oldham J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB20527", "pmid": "26627545", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Corticosteroid therapy and airflow obstruction influence the bronchial microbiome, which…"}]}, "oliphant k": {"display": "Oliphant K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895372", "pmid": "38303501", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiome function and neurodevelopment in Black infants: Vitamin B12 biosynthesis emerg…"}]}, "oliveira g": {"display": "Oliveira G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "oliveira ms": {"display": "Oliveira MS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "oliveira vm": {"display": "Oliveira VM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29861", "pmid": "31550653", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "UNVEILING RESISTOME PROFILES IN THE SEDIMENTS OF AN ANTARCTIC VOLCANIC ISLAND"}]}, "oliveira-ferreira j": {"display": "Oliveira-Ferreira J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA527208", "pmid": "31417531", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}]}, "oliver a": {"display": "Oliver A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA647720", "pmid": "33727392", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiome sequencing during a high fiber diet intervention"}]}, "olivero c": {"display": "Olivero C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "olivo a": {"display": "Olivo A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188190", "pmid": "37113001", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two…"}]}, "olle b": {"display": "Olle B", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1121316", "pmid": "37060545", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}, {"acc": "PRJNA1121316", "pmid": "39747680", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}, {"acc": "PRJNA1463324", "pmid": "41342324", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "VE202 phase 1 stool metagenomes"}, {"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}, {"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "ollila h": {"display": "Ollila H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "olm mr": {"display": "Olm MR", "group": false, "n_studies": 12, "studies": [{"acc": "PRJNA1113165", "pmid": "40102379", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}, {"acc": "PRJNA273761", "pmid": "29180750", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "31844663", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "29180750", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "31844663", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA321218", "pmid": "27819664", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA327106", "pmid": "28073918", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "29180750", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "29925423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "31844663", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376580", "pmid": "29180750", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hospital (NICU) surfaces and sinks"}, {"acc": "PRJNA376580", "pmid": "30770768", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hospital (NICU) surfaces and sinks"}, {"acc": "PRJNA396794", "pmid": "29359195", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA396794", "pmid": "31844663", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA417343", "pmid": null, "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y5 Cohort)"}, {"acc": "PRJNA60717", "pmid": "31844663", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analysis of infant stool sample"}, {"acc": "PRJNA698986", "pmid": "34622230", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA698986", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA717139", "pmid": "34154658", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitaliz…"}]}, "olmastroni e": {"display": "Olmastroni E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA615842", "pmid": "33494335", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}]}, "olofsson jk": {"display": "Olofsson JK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA789782", "pmid": "34970712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of bat coronaviruses from Eswatini"}]}, "olofsson le": {"display": "Olofsson LE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "oloruntuyi g": {"display": "Oloruntuyi G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273078", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Noma oral microbiome raw sequence reads"}]}, "olsen pb": {"display": "Olsen PB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA240141", "pmid": "25208077", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "olsson l": {"display": "Olsson L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "oluniyi p": {"display": "Oluniyi P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "olvera av": {"display": "Olvera AV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "omatsu t": {"display": "Omatsu T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB5383", "pmid": "28095784", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of a novel bovine enterovirus possessing highly divergent amino acid seque…"}]}, "omelchenko o": {"display": "Omelchenko O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60914", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Roles of gut microbiota-mediated nutrient competition and metabolite inhibition in the in…"}]}, "omer e": {"display": "Omer E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "omore r": {"display": "Omore R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "omoregie o": {"display": "Omoregie O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "on behalf of the rehab consortium": {"display": "On Behalf Of The Rehab Consortium", "group": true, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "34609275", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "on behalf on the caged research team": {"display": "on behalf on the CAGED Research Team", "group": true, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "41185061", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "onate fp": {"display": "Oñate FP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36461", "pmid": "32360114", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Laparoscopic Roux-en-Y gastric bypass and sleeve gastrectomy on gut microbiota:…"}]}, "ong c": {"display": "Ong C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA947616", "pmid": "37974294", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome and bloodstream infections among premature infants in Singapore"}]}, "ong t": {"display": "Ong T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA679286", "pmid": "34320399", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Global genome analyses reveal a vast and dynamic anellovirus landscape within the human v…"}]}, "onuora jc": {"display": "Onuora JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "ookoshi k": {"display": "Ookoshi K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB14457", "pmid": "36363762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of healthy Japanese adult"}]}, "ooms ahag": {"display": "Ooms AHAG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "oota h": {"display": "Oota H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB15258", "pmid": "38265980", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of 7,000 to 5,500 years old coprolites excavated from the Torihama s…"}]}, "oozeer r": {"display": "Oozeer R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJNA145005", "pmid": "22030749", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}]}, "opekun ar": {"display": "Opekun AR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1195142", "pmid": "39282326", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}]}, "opintan ja": {"display": "Opintan JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA592050", "pmid": "31738985", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Air genomes from surgical room Raw sequence reads"}]}, "opolon p": {"display": "Opolon P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "oppert jm": {"display": "Oppert JM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "orba y": {"display": "Orba Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB3158", "pmid": "25381053", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shrew fecal metagenome"}]}, "orbe-orihuela yc": {"display": "Orbe-Orihuela YC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA721692", "pmid": "36786619", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "METAGENOMIC ANALYSIS OF MEXICAN CHILDHOOD GUT MICROBIOTA"}]}, "orchanian sb": {"display": "Orchanian SB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA647720", "pmid": "33727392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiome sequencing during a high fiber diet intervention"}]}, "ordiz mi": {"display": "Ordiz MI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "32351922", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "orel n": {"display": "Orel N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85785", "pmid": "41437131", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Seawater Metagenomes from a Wastewater Exposure Experiment"}]}, "oresic m": {"display": "Oresic M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}, {"acc": "PRJNA231909", "pmid": "36195095", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA231909", "pmid": "41339624", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA475246", "pmid": "35685890", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "orf gs": {"display": "Orf GS", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1079728", "pmid": "38655084", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Next-generation sequencing survey of acute febrile illness in Senegal (2020-2022)"}, {"acc": "PRJNA1150154", "pmid": "39251076", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}, {"acc": "PRJNA1188190", "pmid": "37113001", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two…"}, {"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "orho-melander m": {"display": "Orho-Melander M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "orihara k": {"display": "Orihara K", "group": false, "n_studies": 11, "studies": [{"acc": "PRJDB4176", "pmid": "37188713", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB17632", "pmid": "37188713", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Subspecies in the global human gut microbiome"}, {"acc": "PRJEB6070", "pmid": "37188713", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6456", "pmid": "37188713", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB7774", "pmid": "37188713", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "37188713", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJNA217052", "pmid": "37188713", "pos": "first", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Fiji COMP"}, {"acc": "PRJNA268964", "pmid": "37188713", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "37188713", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA290380", "pmid": "37188713", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA485056", "pmid": "37188713", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}]}, "orlandi a": {"display": "Orlandi A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1206145", "pmid": "40898384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of the gut microbiome from infants enrolled in a randomized controlled…"}]}, "orlando l": {"display": "Orlando L", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB41240", "pmid": "33434506", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Heterogeneous hunter-gatherer and steppe-related ancestries in Late Neolithic and Bell Be…"}, {"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}, {"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "orlovskis z": {"display": "Orlovskis Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62817", "pmid": "38868903", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome encoded purine and amino acid pathways present prospective biomarkers for…"}]}, "ormaasen i": {"display": "Ormaasen I", "group": false, "n_studies": 38, "studies": [{"acc": "PRJDB4176", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1220", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB19090", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}, {"acc": "PRJEB21528", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB27005", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB29052", "pmid": "37259063", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB32135", "pmid": "37259063", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB5224", "pmid": "37259063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJEB6456", "pmid": "37259063", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB7774", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB9576", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA268964", "pmid": "37259063", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "37259063", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "37259063", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA278393", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA287207", "pmid": "37259063", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA289586", "pmid": "37259063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA294605", "pmid": "37259063", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA299502", "pmid": "37259063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA324672", "pmid": "37259063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA339914", "pmid": "37259063", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA375935", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut Metagenome"}, {"acc": "PRJNA380031", "pmid": "37259063", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}, {"acc": "PRJNA380118", "pmid": "37259063", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA392180", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "37259063", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA397112", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA397219", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA401385", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA422434", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA431482", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA438847", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA449784", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA472785", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Gut Microbiome Metagenomic Sequencing"}, {"acc": "PRJNA473126", "pmid": "37259063", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA487636", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "An increased abundance of Clostridiaceae characterizes arthritis in inflammatory bowel di…"}, {"acc": "PRJNA492714", "pmid": "37259063", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Impact of High altitude environment of Human oral and gut microbiota"}, {"acc": "PRJNA496479", "pmid": "37259063", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "ormerod kl": {"display": "Ormerod KL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA313232", "pmid": "27388460", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteroidales group S24-7 population genome recovery"}]}, "orsega s": {"display": "Orsega S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "ortega turrubiates mr": {"display": "Ortega Turrubiates MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "ortega-garcia j": {"display": "Ortega-Garcia J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "ortiz m": {"display": "Ortiz M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA630822", "pmid": "34732568", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA630822", "pmid": null, "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}]}, "ortiz n": {"display": "Ortiz N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "ortiz-butron a": {"display": "Ortiz-Butrón A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "orvis j": {"display": "Orvis J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA275349", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA48479", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "osawa t": {"display": "Osawa T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "oshima k": {"display": "Oshima K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA362284", "pmid": "31455406", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}]}, "osiemi b": {"display": "Osiemi B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "osman ka": {"display": "Osman KA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA300541", "pmid": "38049420", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "osman m": {"display": "Osman M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "ossiprandi mc": {"display": "Ossiprandi MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698773", "pmid": "34715437", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}]}, "osterman al": {"display": "Osterman AL", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB6456", "pmid": "35768643", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}]}, "ostermann e": {"display": "Ostermann E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "ostgren cj": {"display": "Östgren CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "ostrowski j": {"display": "Ostrowski J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA943135", "pmid": "37577378", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diarrhoeal-associated gut dysbiosis in cancer and inflammatory bowel disease patients i…"}]}, "osvatic j": {"display": "Osvatic J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1112760", "pmid": "39679616", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic signatures of early life brain damage"}]}, "otake-kasamoto y": {"display": "Otake-Kasamoto Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "otani s": {"display": "Otani S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "38659981", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "oteo ja": {"display": "Oteo JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819232", "pmid": "35618952", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Integrase Inhibitors on gut and oral microbiome"}]}, "otomaru k": {"display": "Otomaru K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB5383", "pmid": "28095784", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of a novel bovine enterovirus possessing highly divergent amino acid seque…"}]}, "ott sj": {"display": "Ott SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB3085", "pmid": "23236009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}]}, "otto m": {"display": "Otto M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA483343", "pmid": "30305736", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "otto w": {"display": "Otto W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB3085", "pmid": "23236009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}]}, "ottosson f": {"display": "Ottosson F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "oturai a": {"display": "Oturai A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51635", "pmid": "36604748", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}]}, "ou j": {"display": "Ou J", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA301903", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA701982", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic-driven intestinal dysbiosis in paediatric SBS alters microbiome functions and…"}]}, "ou l": {"display": "Ou L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}]}, "ou q": {"display": "Ou Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA602729", "pmid": "34079079", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}]}, "ou z": {"display": "Ou Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA401977", "pmid": "41620634", "pos": "last", "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome from patients with gestational diabetes mellitus"}]}, "ouameur aa": {"display": "Ouameur AA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "ouedraogo lo": {"display": "Ouédraogo LO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1113165", "pmid": "40102379", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}]}, "ouedraogo m": {"display": "Ouédraogo M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1113165", "pmid": "40102379", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}]}, "ouellette m": {"display": "Ouellette M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "ouyang y": {"display": "Ouyang Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1092353", "pmid": "39353343", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Benzothiazole-degrading consortia Raw sequence reads and Metagenome"}]}, "ouyang z": {"display": "Ouyang Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961946", "pmid": "37386612", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Human Genome sequencing and assembly"}]}, "overballe-petersen s": {"display": "Overballe-Petersen S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "38659981", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "oviatt cg": {"display": "Oviatt CG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "ovis-sanchez jo": {"display": "Ovis-Sánchez JO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807808", "pmid": "37080313", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microalgae-bacteria system for domestic wastewater treatment"}]}, "owen a": {"display": "Owen A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1201756", "pmid": "37940330", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome Metagenome"}]}, "owen rw": {"display": "Owen RW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35337", "pmid": "11075884", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Analysis of freeze-dried faecal samples collected from individuals between 1974 and 1980"}]}, "owens rm": {"display": "Owens RM", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA400072", "pmid": "41299229", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA615162", "pmid": "41299229", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA821542", "pmid": "41299229", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut metagenomes from mothers and their infants in the EDIA study"}]}, "owiti p": {"display": "Owiti P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1045584", "pmid": "39185682", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of SARS-CoV-2 in stool sample from women living with HIV and HIV-negative women an…"}]}, "ownby d": {"display": "Ownby D", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB29078", "pmid": "37874156", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA296814", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA322188", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}]}, "ownby dr": {"display": "Ownby DR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB52295", "pmid": "38117587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Precocious infant gut microbiome reprograms enterocytes and promotes childhood obesity ri…"}]}, "oyama n": {"display": "Oyama N", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "oyarzun i": {"display": "Oyarzun I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA851554", "pmid": "34938418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomes of the gut microbiota of CD patients that required resection from a Belgian c…"}]}, "oz a": {"display": "Oz A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "ozawa m": {"display": "Ozawa M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB8125", "pmid": "31549291", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metaviromic analyses on crane fecal samples"}]}, "ozcan e": {"display": "Özcan E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1184197", "pmid": "39856104", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Dietary fiber content in clinical ketogenic diets modifies the gut microbiome and seizure…"}]}, "ozcay f": {"display": "Ozcay F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "ozen a": {"display": "Ozen A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "ozga at": {"display": "Ozga AT", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}, {"acc": "PRJNA445215", "pmid": "29959351", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "o’ferrall am": {"display": "O’Ferrall AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273078", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Noma oral microbiome raw sequence reads"}]}, "o’grady j": {"display": "O’Grady J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA722408", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}]}, "paalanne n": {"display": "Paalanne N", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB29078", "pmid": "37874156", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA296814", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA322188", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}]}, "pabilonia k": {"display": "Pabilonia K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1198110", "pmid": "40439559", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Clinical infection by Francisella tularensis ssp. holarctica in stranded beluga whales fr…"}]}, "pablo jv": {"display": "Pablo JV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1320699", "pmid": "42088498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "16S sequencing of infant stool Metagenome"}]}, "pacchioni rg": {"display": "Pacchioni RG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA60545", "pmid": "24706600", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes isolated from NE Brazil"}]}, "pace rm": {"display": "Pace RM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA400259", "pmid": "33328537", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human Milk Microbiome Metagenome"}]}, "pacheco a": {"display": "Pacheco A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "pacheco p": {"display": "Pacheco P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "pachepsky ya": {"display": "Pachepsky YA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1062331", "pmid": "38242477", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Pond microbiome spatiotemporal variation"}]}, "pacifici r": {"display": "Pacifici R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1071073", "pmid": "38530358", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Transgender Mouse Bone Microbiome"}]}, "pacilli m": {"display": "Pacilli M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}]}, "padane a": {"display": "Padane A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1079728", "pmid": "38655084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Next-generation sequencing survey of acute febrile illness in Senegal (2020-2022)"}]}, "pade n": {"display": "Pade N", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "paden c": {"display": "Paden C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "padgett ka": {"display": "Padgett KA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1261853", "pmid": "38816345", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia sp. CA6269 genome sequencing from clinical and environmental samples"}]}, "pagani i": {"display": "Pagani I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1445932", "pmid": "42669658", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of a complementary feeding intervention on the gut microbiota in 12-18-month- old…"}]}, "page aj": {"display": "Page AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA722408", "pmid": "36076058", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}, {"acc": "PRJNA722408", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}]}, "pagel j": {"display": "Pagel J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "pagnozzi d": {"display": "Pagnozzi D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB19090", "pmid": "27671352", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}]}, "pai h": {"display": "Pai H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB33013", "pmid": "36504822", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB55713", "pmid": "36504822", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Child gut microbiome"}]}, "pai sy": {"display": "Pai SY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}]}, "paiella s": {"display": "Paiella S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB67641", "pmid": "38709303", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental Plaque Microbiota Sequence Counts for Microbial Profiling and Resistance Genes Det…"}]}, "pain a": {"display": "Pain A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38089", "pmid": "32091380", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics study of an Imported Multidrug-Resistant Mycobacterium leprae, Saudi Arabia,…"}]}, "paine ar": {"display": "Paine AR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA856701", "pmid": "36165604", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin microbiome of forehead in children with and without acne"}]}, "paine sk": {"display": "Paine SK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945262", "pmid": "37067419", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Gut Microbiome in a mother child paired design"}]}, "pairojkul c": {"display": "Pairojkul C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "paja l": {"display": "Paja L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "pajuelo mj": {"display": "Pajuelo MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1138246", "pmid": "40755247", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal metagenomes of Peruvian children"}]}, "pak jj": {"display": "Pak JJ", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB8347", "pmid": "42259839", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJNA1148144", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Biosignatures of late-onset extraintestinal bacterial infections"}, {"acc": "PRJNA301903", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA48479", "pmid": "42259839", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA489090", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA799247", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA884103", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}]}, "pakala s": {"display": "Pakala S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1502892", "pmid": "40490486", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Associations between antibiotic exposure intensity, intestinal microbiome perturbations,…"}]}, "pal s": {"display": "Pal S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1071073", "pmid": "38530358", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Transgender Mouse Bone Microbiome"}]}, "palazzolo b": {"display": "Palazzolo B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "38782975", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB46659", "pmid": "41265504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "palfi g": {"display": "Pálfi G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}, {"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "palfreyman rw": {"display": "Palfreyman RW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA313232", "pmid": "27388460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteroidales group S24-7 population genome recovery"}]}, "palhares jcp": {"display": "Palhares JCP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA987743", "pmid": "38163076", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Ruminal and Fecal Microbiomes of Brazilian Nelore Cattle"}, {"acc": "PRJNA987743", "pmid": "39695297", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Ruminal and Fecal Microbiomes of Brazilian Nelore Cattle"}]}, "palleja a": {"display": "Palleja A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB42539", "pmid": "34756056", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "FUT2/FUT3 genes sequences and nasopharyngeal shotgun metagenomics from the Microbiota and…"}]}, "pallen mj": {"display": "Pallen MJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB1775", "pmid": "23571589", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diagnostic Metagenomics: A Culture-Independent Approach to the Investigation of Bacterial…"}, {"acc": "PRJNA722408", "pmid": "36076058", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}, {"acc": "PRJNA722408", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}]}, "palm nw": {"display": "Palm NW", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA390646", "pmid": "42236946", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA633576", "pmid": "42236946", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}]}, "palma p": {"display": "Palma P", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1013917", "pmid": "37965266", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Gut microbiota of an immunocompromised child with chronic cryptosporidiosis"}, {"acc": "PRJNA1036590", "pmid": "38318164", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "The Pediatric Gut Microbiome and Virome"}]}, "palmer dj": {"display": "Palmer DJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1452547", "pmid": "42129350", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chlorinated Water Effects on Infant Gut Microbiota"}]}, "palmer ld": {"display": "Palmer LD", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "40763731", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "40763731", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "40763731", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1173239", "pmid": "40763731", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Amino acid competition shapes Acinetobacter baumannii gut carriage"}]}, "palminha p": {"display": "Palminha P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "palmore tn": {"display": "Palmore TN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445389", "pmid": "30586509", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Sphingomonas koreensis Genome sequencing and assembly"}]}, "palomba a": {"display": "Palomba A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB19090", "pmid": "27671352", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}]}, "palsson bo": {"display": "Palsson BO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}]}, "palumbo mc": {"display": "Palumbo MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA390646", "pmid": "29242832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}]}, "palys t": {"display": "Palys T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "30135504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "palys tj": {"display": "Palys TJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "34215179", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "34454437", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35568730", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35906254", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "36777525", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "pamer eg": {"display": "Pamer EG", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB102033", "pmid": "41330369", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lantibiotic-producing bacteria impact microbiome resilience and colonization resistance"}, {"acc": "PRJNA259179", "pmid": "25337874", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Studies of intestinal microbiome and infection resistance"}, {"acc": "PRJNA394877", "pmid": "31435014", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}, {"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "pamies d": {"display": "Pàmies D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43276", "pmid": "34527890", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Salmonella enterica from a soldier from the 1652-siege of Barcelona (Spain) supports hist…"}]}, "pammi m": {"display": "Pammi M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46337", "pmid": "28274256", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}]}, "pan a": {"display": "Pan A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA669352", "pmid": "38366247", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome assembly for sulfonamide subsistence and the transfer of genetic determinants"}]}, "pan c": {"display": "Pan C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA209131", "pmid": "23976882", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacter…"}, {"acc": "PRJNA400115", "pmid": "35729161", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}]}, "pan j": {"display": "Pan J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB108038", "pmid": "41834868", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Jaundice and the Infant Gut Microbiome: An Integrated Shotgun Metagenomics and B…"}, {"acc": "PRJNA1018083", "pmid": "38705065", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "comammox supports stable production of ammonia nitrate from urine"}]}, "pan l": {"display": "Pan L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1238458", "pmid": "42654723", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Raw data of 16S rRNA sequencing of preterm infants' feces (NEC study)"}]}, "pan s": {"display": "Pan S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA300541", "pmid": "35484115", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA504891", "pmid": "35484115", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "36376928", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "pan x": {"display": "Pan X", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715658", "pmid": "40266232", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Genome-resolved metagenomics of the chicken gut microbiome"}, {"acc": "PRJNA735411", "pmid": "40266232", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Microbial Ecology of sea lion gut microbiome at Comau Fjord, Northern Patagonia (42 S). R…"}]}, "pan y": {"display": "Pan Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB20308", "pmid": "29669589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Similarity of the dog and human gut microbiomes in gene content and response to diet"}]}, "pan z": {"display": "Pan Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "40755225", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "pan-hammarstrom q": {"display": "Pan-Hammarström Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633381", "pmid": "33662387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "IgA deficiency microbiota"}]}, "panagiotou g": {"display": "Panagiotou G", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA573821", "pmid": "32919472", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Whole Meta-genome shotgun sequencing of stool samples from human treated with antibiotics"}, {"acc": "PRJNA626477", "pmid": "34002024", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut microbiota Raw sequence reads with and without cancer cachexia"}, {"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}, {"acc": "PRJNA728908", "pmid": "35675435", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of baseline individuals in a 4.6-year non-alcoholic fatty liver disease pr…"}]}, "panaino w": {"display": "Panaino W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA942254", "pmid": "37650612", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomics of fecal samples from ant-eating mammal species"}]}, "panda a": {"display": "Panda A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "pandey u": {"display": "Pandey U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA381395", "pmid": "28843021", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut and nasal microbiome in Parkinson''s disease"}]}, "pane m": {"display": "Pane M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746509", "pmid": "34946200", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota in an infant with propionic acidemia before and after probiotic supplement…"}]}, "pane s": {"display": "Pane S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1013917", "pmid": "37965266", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Gut microbiota of an immunocompromised child with chronic cryptosporidiosis"}, {"acc": "PRJNA1036590", "pmid": "38318164", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "The Pediatric Gut Microbiome and Virome"}]}, "paneth n": {"display": "Paneth N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "38782975", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB46659", "pmid": "41265504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "panettieri ra": {"display": "Panettieri RA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}]}, "panitchpakdi m": {"display": "Panitchpakdi M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}]}, "pannek j": {"display": "Pannek J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1139160", "pmid": "40229352", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uro-Vaxom Pilot"}]}, "pant sd": {"display": "Pant SD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019894", "pmid": "37835668", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Bos taurus breed:Angus Targeted Locus (Loci)"}]}, "panthu b": {"display": "Panthu B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "panzer ar": {"display": "Panzer AR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "paolantonio ks": {"display": "Paolantonio KS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "papadopoulos fc": {"display": "Papadopoulos FC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62678", "pmid": "31641004", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "BASIC: Biology, Affect, Stress, Imaging and Cognition in pregnancy"}]}, "papagiannarou sm": {"display": "Papagiannarou SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "papaiakovou m": {"display": "Papaiakovou M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": "first", "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "papanicolas le": {"display": "Papanicolas LE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "papasian cj": {"display": "Papasian CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA312041", "pmid": "27226242", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human fecal raw sequence reads"}]}, "papin ja": {"display": "Papin JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "papp m": {"display": "Papp M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685398", "pmid": "36083885", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Honey bee gut microbiome"}]}, "paramo j": {"display": "Paramo J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1184197", "pmid": "39856104", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Dietary fiber content in clinical ketogenic diets modifies the gut microbiome and seizure…"}]}, "pardi ds": {"display": "Pardi DS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1121316", "pmid": "37060545", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}]}, "pardini b": {"display": "Pardini B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "paredes e": {"display": "Paredes E", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "paredes olortegui m": {"display": "Paredes Olortegui M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA834762", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "38427700", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA837236", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "38427700", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA912682", "pmid": "38272215", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "38427700", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "39727415", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}]}, "paredes rosendo e": {"display": "Paredes Rosendo E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "paredes sosa jl": {"display": "Paredes Sosa JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA802048", "pmid": "37882571", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Insights into the infant gut microbiome composition after bovine lactoferrin oral adminis…"}]}, "paredes-solis v": {"display": "Paredes-Solis V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "parham la": {"display": "Parham LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "parizadeh m": {"display": "Parizadeh M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1258733", "pmid": "42127418", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Metagenome"}]}, "park dj": {"display": "Park DJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}, {"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "park ej": {"display": "Park EJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87348", "pmid": "40210629", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "VLP metagenome of Korean gut"}]}, "park gw": {"display": "Park GW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28302791", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "park j": {"display": "Park J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB14457", "pmid": "36363762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of healthy Japanese adult"}, {"acc": "PRJNA642893", "pmid": "33212154", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin microbiome from cutaneous T-cell lymphoma patients and healthy volunteers"}]}, "park js": {"display": "Park JS", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB33013", "pmid": "36504822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB55713", "pmid": "36504822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Child gut microbiome"}]}, "park jw": {"display": "Park JW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87348", "pmid": "40210629", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "VLP metagenome of Korean gut"}]}, "park m": {"display": "Park M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA445389", "pmid": "30586509", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Sphingomonas koreensis Genome sequencing and assembly"}, {"acc": "PRJNA46333", "pmid": "23698366", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "24170601", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}]}, "park nj": {"display": "Park NJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11419", "pmid": "38188664", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}]}, "park s": {"display": "Park S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA607328", "pmid": "32381611", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Whole-genome sequencing of bacteria, fungi, plants, and metagenomes"}]}, "park sy": {"display": "Park SY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1261853", "pmid": "38816345", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia sp. CA6269 genome sequencing from clinical and environmental samples"}]}, "park ym": {"display": "Park YM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45443", "pmid": "35485368", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJEB45443", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJNA979436", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}]}, "parker ct": {"display": "Parker CT", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA834762", "pmid": "36194603", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "38427700", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA837236", "pmid": "36194603", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "38427700", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA912682", "pmid": "38272215", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "38427700", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "39727415", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}]}, "parker epk": {"display": "Parker EPK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62041", "pmid": "37980461", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Rotavirus Vaccine Immunogenicity (RoVI) shotgun metagenomics"}]}, "parkes m": {"display": "Parkes M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB7772", "pmid": "25619688", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}]}, "parkhill j": {"display": "Parkhill J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28671", "pmid": "34972822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A_novel_nano_iron_supplement__IHAT__to_safely_combact_iron_deficiency_and_anemia"}]}, "parkin k": {"display": "Parkin K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1452547", "pmid": "42129350", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Chlorinated Water Effects on Infant Gut Microbiota"}]}, "parks dh": {"display": "Parks DH", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1156595", "pmid": "39827146", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics: a new frontier for routine pathology testing of gastrointestinal pathogens"}, {"acc": "PRJNA1200893", "pmid": "41809988", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}, {"acc": "PRJNA348149", "pmid": "28360330", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome"}]}, "parnanen k": {"display": "Pärnänen K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA384716", "pmid": "30250208", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}]}, "parnanen km": {"display": "Pärnänen KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "39092808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "parnanen kmm": {"display": "Pärnänen KMM", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "34677583", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "34677583", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA301903", "pmid": "34677583", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA396794", "pmid": "34677583", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "34677583", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA532310", "pmid": "34677583", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut metagenome"}]}, "parobek cm": {"display": "Parobek CM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB10057", "pmid": "26180832", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Variation in the Microbiota of Ixodes ticks with geography, species and sex"}, {"acc": "PRJEB10073", "pmid": "26180832", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Variation in the Microbiota of Ixodes ticks with geography, species and sex illumina"}]}, "parra-llorca a": {"display": "Parra-Llorca A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB74322", "pmid": "38870906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJNA1227883", "pmid": "31053102", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}]}, "parry s": {"display": "Parry S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA451186", "pmid": "30376898", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Placenta Microbiome"}]}, "parschat k": {"display": "Parschat K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62690", "pmid": "37513505", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, 5-HMO supplemented formula vs. control formula vs. breastfed"}]}, "parsonnet j": {"display": "Parsonnet J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA644725", "pmid": "32958861", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA916952", "pmid": "36758519", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Stanford's Outcomes Research in Kids (STORK) Virome"}]}, "parsons jd": {"display": "Parsons JD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA313232", "pmid": "27388460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteroidales group S24-7 population genome recovery"}]}, "partty a": {"display": "Pärtty A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62848", "pmid": "38010080", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, moderate and late preterm infants, probiotic and prebiotic"}]}, "paruthiyil s": {"display": "Paruthiyil S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945408", "pmid": "38085102", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prev…"}]}, "pascoe b": {"display": "Pascoe B", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA834762", "pmid": "38427700", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA837236", "pmid": "38427700", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA912682", "pmid": "38272215", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "38427700", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "39727415", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}]}, "pasculle aw": {"display": "Pasculle AW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA475137", "pmid": "33245689", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhizopus oryzae Genome sequencing and assembly"}]}, "pasetti mf": {"display": "Pasetti MF", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA774819", "pmid": "35695455", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Highly specialized carbohydrate metabolism capability in Bifidobacterium strain associate…"}, {"acc": "PRJNA776332", "pmid": "35280991", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Altered gut microbiome and fecal immune phenotype in early preterm infants with leaky gut"}]}, "paskov km": {"display": "Paskov KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "34666677", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "pasolli e": {"display": "Pasolli E", "group": false, "n_studies": 21, "studies": [{"acc": "PRJEB15371", "pmid": "30661755", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB6456", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA231909", "pmid": "30661755", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "30661755", "pos": "first", "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "30661755", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}, {"acc": "PRJNA48479", "pmid": "30661755", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "30661755", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA504891", "pmid": "30661755", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "32427907", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA947377", "pmid": "38366600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Establishment of a non-Westernized gut microbiota in men who have sex with men is associa…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "pasquali g": {"display": "Pasquali G", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB15633", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJNA284162", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "STL Infant Twins Microbiome"}, {"acc": "PRJNA301903", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA379120", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA497734", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "pasricha s": {"display": "Pasricha S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "pasricha sr": {"display": "Pasricha SR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39143045", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}, {"acc": "PRJNA1081952", "pmid": "39367018", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "pass da": {"display": "Pass DA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1235110", "pmid": "39798461", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome"}]}, "passos-bueno mr": {"display": "Passos-Bueno MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1072081", "pmid": "40237336", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Identifying Biomarkers and Trajectories of Typical Neurodevelopment in Children, the BRAI…"}]}, "pastore a": {"display": "Pastore A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "pastrana dv": {"display": "Pastrana DV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "pastuschek j": {"display": "Pastuschek J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA799199", "pmid": "35256725", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Evaluation of microbiome enrichment and host DNA depletion in human vaginal samples using…"}]}, "paszkiewicz k": {"display": "Paszkiewicz K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA213036", "pmid": "24072871", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Cronobacter sakazakii NCIMB 8272 Genome sequencing and assembly"}]}, "patai av": {"display": "Patai ÁV", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA591315", "pmid": "32366826", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "raw milk metagenome"}, {"acc": "PRJNA644779", "pmid": "33384459", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "yogurt and kefir seed culture sequencing"}]}, "patan a": {"display": "Patan A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "patangia d": {"display": "Patangia D", "group": false, "n_studies": 33, "studies": [{"acc": "PRJEB24006", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB27928", "pmid": "36050292", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB32631", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "36050292", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB36820", "pmid": "36050292", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB6456", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA272371", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA301903", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA436562", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA521878", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA542703", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA555020", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA562766", "pmid": "36050292", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA657818", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}]}, "patangia dv": {"display": "Patangia DV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA971895", "pmid": "38310316", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Resismet"}]}, "patarroyo j": {"display": "Patarroyo J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "patel a": {"display": "Patel A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "patel am": {"display": "Patel AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "patel e": {"display": "Patel E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}]}, "patel f": {"display": "Patel F", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "42311381", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "patel jc": {"display": "Patel JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "patel jm": {"display": "Patel JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748448", "pmid": "34523979", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic WGS of Preterm Infant Skin and Stool"}]}, "patel kd": {"display": "Patel KD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1055141", "pmid": "42336834", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool shallow shotgun sequencing (ANTIBIO)"}]}, "patel mz": {"display": "Patel MZ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "patel r": {"display": "Patel R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA518922", "pmid": "31577814", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metegenomic sequencing of blood from patients with vector-borne diseases"}]}, "patel rk": {"display": "Patel RK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "patel s": {"display": "Patel S", "group": false, "n_studies": 7, "studies": [{"acc": "PRJNA215106", "pmid": "24236055", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA268964", "pmid": "27172044", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "27172044", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA352475", "pmid": "36420990", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA679286", "pmid": "34320399", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Global genome analyses reveal a vast and dynamic anellovirus landscape within the human v…"}, {"acc": "PRJNA688274", "pmid": "34092249", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA698223", "pmid": "36470885", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "TD Cusco travelers study"}]}, "patel sm": {"display": "Patel SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "patel sp": {"display": "Patel SP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "patel vc": {"display": "Patel VC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1307628", "pmid": "41461922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbial oral-gut translocation in advanced chronic liver disease is linked to exacerbat…"}]}, "pathmasiri w": {"display": "Pathmasiri W", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA296814", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA695570", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "pathmasiri ww": {"display": "Pathmasiri WW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "34454437", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "patil kr": {"display": "Patil KR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}, {"acc": "PRJEB29052", "pmid": "39794474", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}]}, "patil s": {"display": "Patil S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1071073", "pmid": "38530358", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Transgender Mouse Bone Microbiome"}]}, "patrick dm": {"display": "Patrick DM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "patrocinio de jesus r": {"display": "Patrocínio de Jesus R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "patron ap": {"display": "Patron AP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA806984", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}]}, "pattanayak cw": {"display": "Pattanayak CW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA695570", "pmid": "34335499", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "pattaroni c": {"display": "Pattaroni C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1080233", "pmid": "39214237", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Breathing Together severe wheeze and asthma cohort"}]}, "patterson ad": {"display": "Patterson AD", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA412411", "pmid": "34163067", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "paudel d": {"display": "Paudel D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "paudel s": {"display": "Paudel S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29668933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "paul f": {"display": "Paul F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}]}, "paul lm": {"display": "Paul LM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "paul m": {"display": "Paul M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA628604", "pmid": "32511695", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}]}, "paul ross r": {"display": "Paul Ross R", "group": false, "n_studies": 41, "studies": [{"acc": "PRJEB24006", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB27928", "pmid": "36050292", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB27928", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB32631", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "36050292", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB32731", "pmid": "38424077", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB36820", "pmid": "36050292", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB36820", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB6456", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9524", "pmid": "38424077", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Expanded Enteric Virome and Altered Bacterial Microbiome in Acquired Immunodeficiency Syn…"}, {"acc": "PRJNA272371", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA301903", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA301903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA385126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA387903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Intestinal Virome Changes Precede Autoimmunity in Type I Diabetes Susceptible Children"}, {"acc": "PRJNA390646", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA390646", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA396794", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA407341", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA436562", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA446038", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA491626", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut virome of Cameroonians living in close proximity with bats"}, {"acc": "PRJNA521878", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA521878", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA545408", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Longitudinal study of the human gut virome"}, {"acc": "PRJNA555020", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA562766", "pmid": "36050292", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA562766", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA657818", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA657818", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}]}, "paulin l": {"display": "Paulin L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59350", "pmid": "39143178", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "deep shotgun DNA sequencing of 136 patient’s fecal samples (Parkinson vs Control)"}, {"acc": "PRJEB59350", "pmid": "40258842", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "deep shotgun DNA sequencing of 136 patient’s fecal samples (Parkinson vs Control)"}]}, "paullin t": {"display": "Paullin T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1222487", "pmid": "42293161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome signatures and reduced Faecalibacterium and Roseburia in infants with earl…"}]}, "pausan m-r": {"display": "Pausan M-R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB77729", "pmid": "39714161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "First-Year Dynamics of the Microbiome in Infants’ Oral and Gastrointestinal Systems"}]}, "pausan mr": {"display": "Pausan MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": "32354144", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "pavloudi c": {"display": "Pavloudi C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "pawluk a": {"display": "Pawluk A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA398089", "pmid": "35614211", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}]}, "payet jp": {"display": "Payet JP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA437202", "pmid": "33117317", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Red Sea coral metagenomes"}]}, "payne ms": {"display": "Payne MS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819247", "pmid": "36060782", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome Raw sequence reads"}]}, "payne te": {"display": "Payne TE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14718", "pmid": "28667104", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Study of the changes in the metagenome of the groundwater community at Little Forest Lega…"}, {"acc": "PRJEB14718", "pmid": "34737728", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Study of the changes in the metagenome of the groundwater community at Little Forest Lega…"}, {"acc": "PRJEB14718", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Study of the changes in the metagenome of the groundwater community at Little Forest Lega…"}]}, "payungporn s": {"display": "Payungporn S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA548968", "pmid": "31652508", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Fecal virome of wild and captive Cynomolgus macaques (Macaca fascicularis) in Thailand."}]}, "pazdrak b": {"display": "Pazdrak B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "pazur k": {"display": "Pazur K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "peano c": {"display": "Peano C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA278393", "pmid": "25981789", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA615842", "pmid": "33494335", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}]}, "pearce bd": {"display": "Pearce BD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA725416", "pmid": "33996627", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Emory University African American Vaginal, Oral, and Gut Microbiome in Pregnancy Cohort S…"}]}, "pearce cm": {"display": "Pearce CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "pearce g": {"display": "Pearce G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4647", "pmid": "26197475", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Search Engine for Antimicrobial Resistance: a cloud compatible pipeline and web interface…"}]}, "pearce gp": {"display": "Pearce GP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12083", "pmid": "28175320", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Metagenomes"}]}, "pearse o": {"display": "Pearse O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63570", "pmid": null, "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Klebsiella_transmission_and_immunity_on_Chatinkha_nursery__Neo_TRACK_"}]}, "pecastaings s": {"display": "Pécastaings S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80549", "pmid": "41196055", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterisation of the forehead and armpit skin microbiome of healthy individuals using…"}]}, "pedamallu cs": {"display": "Pedamallu CS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "peddada s": {"display": "Peddada S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29078", "pmid": "30813950", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}]}, "peddu v": {"display": "Peddu V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29554870", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "pedersen ag": {"display": "Pedersen AG", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}]}, "pedersen dd": {"display": "Pedersen DD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB66169", "pmid": "41540446", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient DNA study provides clues to leprosy susceptibility in medieval Europe"}]}, "pedersen hk": {"display": "Pedersen HK", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "pedersen mw": {"display": "Pedersen MW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "pedersen o": {"display": "Pedersen O", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB51635", "pmid": "36604748", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}, {"acc": "PRJEB51776", "pmid": "37069399", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "pedersen t": {"display": "Pedersen T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29052", "pmid": "30505830", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}]}, "pedrotti a": {"display": "Pedrotti A", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA339914", "pmid": "28144631", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}]}, "peek rm": {"display": "Peek RM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA986525", "pmid": "38441000", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "2'-fucoysllactose treatment of C57BL/6 adult mice fecal metagenomics"}]}, "peel n": {"display": "Peel N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22207", "pmid": "31844297", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}]}, "peer cj": {"display": "Peer CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA604820", "pmid": "34936382", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin metagenome from antibiotics treated healthy human subjects"}]}, "pehrsson ec": {"display": "Pehrsson EC", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}, {"acc": "PRJNA268964", "pmid": "27172044", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "27172044", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "peiffer lb": {"display": "Peiffer LB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA793907", "pmid": "35908379", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial 16S rRNA gene sequences from fecal samples of prostate cancer patients treated…"}]}, "peixoto rs": {"display": "Peixoto RS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA649484", "pmid": "34389536", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "pelczar p": {"display": "Pelczar P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "peled ju": {"display": "Peled JU", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}, {"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}, {"acc": "PRJNA946744", "pmid": "39666007", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Homo sapiens metagenomic sequences"}]}, "pelerito a": {"display": "Pelerito A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "35750157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "36131032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "pell lg": {"display": "Pell LG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "pellegatta f": {"display": "Pellegatta F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA615842", "pmid": "33494335", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}]}, "pelletier a": {"display": "Pelletier A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "pelletier e": {"display": "Pelletier E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}]}, "pena e": {"display": "Pena E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "pena-gonzalez a": {"display": "Peña-Gonzalez A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486009", "pmid": "33452027", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Genome diversity of pathogenic Escherichia coli in Ecuador"}]}, "penataro yori p": {"display": "Peñataro Yori P", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA834762", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "38427700", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA837236", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "38427700", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA912682", "pmid": "38272215", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "38427700", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "39727415", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}]}, "penders j": {"display": "Penders J", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB26795", "pmid": "30609941", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB89491", "pmid": "42057198", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "LucKi Gut - Longitudinal metagenomic sequencing of infant gut microbiota"}, {"acc": "PRJNA1230889", "pmid": "42020426", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}, {"acc": "PRJNA1230889", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}, {"acc": "PRJNA688274", "pmid": "34092249", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Netherland Travelers"}]}, "penewit k": {"display": "Penewit K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1015704", "pmid": "40042126", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal and oropharyngeal microbiota from infants with cystic fibrosis on and off beta-lact…"}]}, "peng c": {"display": "Peng C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1070846", "pmid": "38647334", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal metagenomic sequecing"}]}, "peng l": {"display": "Peng L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1025870", "pmid": "38778483", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota transplantation significantly improved respiratory failure of amyotrophi…"}, {"acc": "PRJNA477424", "pmid": "30619206", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "panda gut metagenome raw sequence reads Raw sequence reads"}]}, "peng m": {"display": "Peng M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522699", "pmid": "31427729", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}]}, "peng r": {"display": "Peng R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1052964", "pmid": "40860434", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}]}, "peng s": {"display": "Peng S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA775062", "pmid": "42326398", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Landscapes of bacterial, viral and metabolic signatures and their interaction in early-we…"}, {"acc": "PRJNA847006", "pmid": "42326398", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}]}, "peng t": {"display": "Peng T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA776087", "pmid": "36973820", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}]}, "peng w": {"display": "Peng W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA475246", "pmid": "38486699", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "peng y": {"display": "Peng Y", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB52774", "pmid": "39591974", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA806510", "pmid": "40487637", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of Gut Microbiota Mediated Metformin Monotherapy Failure in Type 2 Diabetes Mellitus"}]}, "penhoat a": {"display": "Penhoat A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "penney nc": {"display": "Penney NC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473348", "pmid": "36217535", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effect of bariatric surgery on the faecal metagenome"}]}, "penno mas": {"display": "Penno MAS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}]}, "peplies j": {"display": "Peplies J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA158313", "pmid": "23251564", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Iberian lynx fecal Metagenome"}]}, "pepper g": {"display": "Pepper G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29898986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "pepper gg": {"display": "Pepper GG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "30305383", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "pepperell cs": {"display": "Pepperell CS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352376", "pmid": "28072390", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}]}, "perales ma": {"display": "Perales MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "peralta-santos a": {"display": "Peralta-Santos A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "peras m": {"display": "Peras M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "37938270", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "percopo i": {"display": "Percopo I", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "perdomo mf": {"display": "Perdomo MF", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA348754", "pmid": "27939314", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}, {"acc": "PRJNA924035", "pmid": "36951096", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Unmasking the Tissue-Resident Eukaryotic DNA virome in Humans"}]}, "perdue tj": {"display": "Perdue TJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1290379", "pmid": "41593042", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool"}]}, "pereira brunelli jg": {"display": "Pereira Brunelli JG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "pereira dia": {"display": "Pereira DIA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28671", "pmid": "34972822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A_novel_nano_iron_supplement__IHAT__to_safely_combact_iron_deficiency_and_anemia"}, {"acc": "PRJEB28671", "pmid": "41387413", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A_novel_nano_iron_supplement__IHAT__to_safely_combact_iron_deficiency_and_anemia"}]}, "pereira e": {"display": "Pereira E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "pereira fc": {"display": "Pereira FC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1033532", "pmid": "38014294", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Evaluating the impact of pharmaceuticals on the human gut microbiome Raw sequence reads"}]}, "pereira lm": {"display": "Pereira LM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA649484", "pmid": "34389536", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "pereira m": {"display": "Pereira M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37731", "pmid": "33208514", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}]}, "pereira pab": {"display": "Pereira PAB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59350", "pmid": "39143178", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "deep shotgun DNA sequencing of 136 patient’s fecal samples (Parkinson vs Control)"}, {"acc": "PRJEB59350", "pmid": "40258842", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "deep shotgun DNA sequencing of 136 patient’s fecal samples (Parkinson vs Control)"}]}, "pereira ts": {"display": "Pereira TS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA60545", "pmid": "24706600", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes isolated from NE Brazil"}]}, "pereira-flores e": {"display": "Pereira-Flores E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21210", "pmid": "29866485", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "North Sea Virome"}]}, "pereira-santos d": {"display": "Pereira-Santos D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1072081", "pmid": "40237336", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Identifying Biomarkers and Trajectories of Typical Neurodevelopment in Children, the BRAI…"}]}, "perelli l": {"display": "Perelli L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "perelman d": {"display": "Perelman D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177009", "pmid": "40738103", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A human milk oligosaccharide alters the microbiome, circulating hormones, cytokines and m…"}]}, "perenboom c": {"display": "Perenboom C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "perera-perez vd": {"display": "Perera-Pérez VD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807808", "pmid": "37080313", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microalgae-bacteria system for domestic wastewater treatment"}]}, "peret tct": {"display": "Peret TCT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "34673119", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "peretti a": {"display": "Peretti A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "perez a": {"display": "Perez A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB50897", "pmid": "40244028", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental pulp"}]}, "perez d": {"display": "Pérez D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42270", "pmid": "33957869", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Long-read metagenomics to retrieve high-quality metagenome-assembled genomes from canine…"}]}, "perez j": {"display": "Perez J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA772730", "pmid": "35071138", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The FOUNDATION Study: Hospital Formulation Of B. infantis EVC001 Utilized In The NICU To…"}]}, "perez lj": {"display": "Perez LJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA789273", "pmid": "34960803", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Emergence of a Distinct Picobirnavirus Genotype Circulating in Patients Hospitalized with…"}]}, "perez-brocal v": {"display": "Pérez-Brocal V", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB26810", "pmid": "34071061", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}, {"acc": "PRJEB26810", "pmid": "38257101", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}, {"acc": "PRJEB3206", "pmid": "23760301", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of the viral and microbial metagenomes associated with the Crohn's disease"}, {"acc": "PRJEB39661", "pmid": "41513932", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}, {"acc": "PRJEB62571", "pmid": "41513932", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}]}, "perez-cobas ae": {"display": "Pérez-Cobas AE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB3085", "pmid": "23236009", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}]}, "perez-florido j": {"display": "Perez-Florido J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55075", "pmid": "38524774", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Molecular and phylogenetic characterization of the monkeypox outbreak in Andalusia, Spain"}]}, "perez-garcia p": {"display": "Perez-Garcia P", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB40662", "pmid": "34675897", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Deep (Meta)genomics and (Meta)transcriptome Analyses of Fungal and Bacteria Consortia Fro…"}, {"acc": "PRJNA240141", "pmid": "36284144", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "perez-gordo m": {"display": "Pérez-Gordo M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991269", "pmid": "38589361", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "perez-guijarro e": {"display": "Perez-Guijarro E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "perez-juarez h": {"display": "Pérez-Juárez H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA592261", "pmid": "32788688", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "35196791", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "36650178", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}]}, "perez-losada m": {"display": "Pérez-Losada M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA446042", "pmid": "37577334", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomic Asthma Chile"}]}, "perez-matute p": {"display": "Pérez-Matute P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819232", "pmid": "35618952", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Integrase Inhibitors on gut and oral microbiome"}]}, "perez-molina ja": {"display": "Pérez-Molina JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "perez-osorio ac": {"display": "Pérez-Osorio AC", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1066815", "pmid": "38963827", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human rhinovirus A, B and C in Washington State"}, {"acc": "PRJNA338014", "pmid": "28935730", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA723895", "pmid": "38963827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Rhinovirus NGS"}]}, "perez-rocher b": {"display": "Pérez-Rocher B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB39661", "pmid": "41513932", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}, {"acc": "PRJEB62571", "pmid": "41513932", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}]}, "perier u": {"display": "Perier Ü", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1108908", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1108960", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1109334", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}]}, "perkins dl": {"display": "Perkins DL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28510", "pmid": "27633952", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diverse virome in kidney transplant patients contains multiple viral subtypes with dist…"}]}, "perna g": {"display": "Perna G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA649484", "pmid": "34389536", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "pernica jm": {"display": "Pernica JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA980291", "pmid": "38298144", "pos": "last", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Targeted Capture of AMR in children in Botswana"}]}, "perreten v": {"display": "Perreten V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA931814", "pmid": "37720151", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistome and microbiome analysis of stool samples from healthy people using shotgun meta…"}]}, "perrett kp": {"display": "Perrett KP", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "perri a": {"display": "Perri A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}]}, "perrocheau a": {"display": "Perrocheau A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "perrotta ar": {"display": "Perrotta AR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}]}, "perroud e": {"display": "Perroud E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36797", "pmid": "32711187", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The GLP-1R agonist liraglutide limits hepatic lipotoxicity and inflammatory response in m…"}]}, "perry jd": {"display": "Perry JD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39610", "pmid": "39216480", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}]}, "perry wb": {"display": "Perry WB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1235110", "pmid": "39798461", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome"}]}, "perschbacher s": {"display": "Perschbacher S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "persson a": {"display": "Persson A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "persson m": {"display": "Persson M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "peru e": {"display": "Péru E", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "peruzzu f": {"display": "Peruzzu F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "pesavento pa": {"display": "Pesavento PA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA255683", "pmid": "25078300", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "CAT fecal Metagenome"}]}, "peschka m": {"display": "Peschka M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "pesonen m": {"display": "Pesonen M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB32631", "pmid": "36456554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}]}, "pession a": {"display": "Pession A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA525982", "pmid": "30948795", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transpl…"}, {"acc": "PRJNA914532", "pmid": "36639555", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "Levofloxacin prophylaxis and parenteral nutrition have a detrimental effect on intestinal…"}]}, "pestana m": {"display": "Pestana M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "pester m": {"display": "Pester M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884026", "pmid": "36724220", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic investigation of lake Issyk-Kul, Kyrgyzstan"}]}, "peter h": {"display": "Peter H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA781406", "pmid": "35444202", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Vanishing Glaciers Project"}]}, "peter i": {"display": "Peter I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39474439", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "peter s": {"display": "Peter S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB10391", "pmid": "26369961", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of ciprofloxacin pertubation on the intestinal resistome and microbiota in two hea…"}, {"acc": "PRJEB12272", "pmid": "27984120", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A statistical test for the detection of inhomogeneity in metagenomic samples"}, {"acc": "PRJEB76913", "pmid": "39881980", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Factors affecting the gut microbiota composition of children with CHD"}]}, "peters km": {"display": "Peters KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893826", "pmid": "38622998", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Culture-independent long read metagenomic diagnostics for genomic surveillance and infect…"}]}, "peters l": {"display": "Peters L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "peters m": {"display": "Peters M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273078", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Noma oral microbiome raw sequence reads"}]}, "peters sl": {"display": "Peters SL", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA294605", "pmid": "36478853", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA376566", "pmid": "36478853", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA717139", "pmid": "34154658", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitaliz…"}]}, "petersen c": {"display": "Petersen C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}, {"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "37644001", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "40623174", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "42337243", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "petersen fc": {"display": "Petersen FC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1009231", "pmid": "39019886", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Born in the twilight of antbiotics"}, {"acc": "PRJNA876384", "pmid": "36620054", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Microbial DNA extraction of high-host content and low biomass samples: optimized protocol…"}]}, "petersen j": {"display": "Petersen J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1198110", "pmid": "40439559", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Clinical infection by Francisella tularensis ssp. holarctica in stranded beluga whales fr…"}]}, "petersen np": {"display": "Petersen NP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "peterson b": {"display": "Peterson B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "peterson cb": {"display": "Peterson CB", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "peterson d": {"display": "Peterson D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA695570", "pmid": "34335499", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "peterson la": {"display": "Peterson LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "36777525", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "petersone-gordina e": {"display": "Pētersone-Gordina E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB36413", "pmid": "32884081", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Yersinia pestis strains from Latvia show depletion of the pla virulence gene at the end o…"}, {"acc": "PRJEB42185", "pmid": "34192537", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}]}, "petit ma": {"display": "Petit MA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40396485", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA715601", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}]}, "petlura c": {"display": "Petlura C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177009", "pmid": "40738103", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A human milk oligosaccharide alters the microbiome, circulating hormones, cytokines and m…"}]}, "peto tea": {"display": "Peto TEA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "34609275", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "petretto a": {"display": "Petretto A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1168703", "pmid": "38485093", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of an epilepsy-linked gut microbiota signature in a pediatric rat model of…"}]}, "petriglieri f": {"display": "Petriglieri F", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52550", "pmid": "36697964", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of samples suspected of featuring cable bacteria genomic DNA with s…"}, {"acc": "PRJEB58634", "pmid": "40707831", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencin…"}]}, "petrosino jf": {"display": "Petrosino JF", "group": false, "n_studies": 13, "studies": [{"acc": "PRJNA1084251", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tryptophan metabolites in fecal samples from healthy humans"}, {"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "39282326", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1195144", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1224818", "pmid": "38361816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with n…"}, {"acc": "PRJNA268964", "pmid": "35672407", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "35672407", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA392180", "pmid": "35672407", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA416160", "pmid": "39856391", "pos": "last", "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "The Environmental Determinants of Diabetes in the Young (TEDDY) Parent Study"}, {"acc": "PRJNA485056", "pmid": "35672407", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA497734", "pmid": "35672407", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}, {"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "petrov sn": {"display": "Petrov SN", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB11419", "pmid": "36032669", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJNA398089", "pmid": "36032669", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA400115", "pmid": "36032669", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}]}, "petrova a": {"display": "Petrova A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "pettener d": {"display": "Pettener D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "pettersen vk": {"display": "Pettersen VK", "group": false, "n_studies": 12, "studies": [{"acc": "PRJEB32631", "pmid": "40048849", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB51728", "pmid": "40048849", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB6456", "pmid": "40048849", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1305341", "pmid": "42013844", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "ProRIDE Deep Seq Metagenomics Raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "40048849", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA352475", "pmid": "40048849", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "40048849", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA473126", "pmid": "40048849", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "40048849", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA549787", "pmid": "40048849", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA595749", "pmid": "40048849", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}, {"acc": "PRJNA898628", "pmid": "37187112", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "PINGU Fecal samples Metagenome"}, {"acc": "PRJNA898628", "pmid": "40048849", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "PINGU Fecal samples Metagenome"}]}, "petterson xm": {"display": "Petterson XM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "pettigrew mm": {"display": "Pettigrew MM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "35568730", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "pettry c": {"display": "Pettry C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "petty le": {"display": "Petty LE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA734860", "pmid": "34633706", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA734860", "pmid": "35477306", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}]}, "pevsner-fischer m": {"display": "Pevsner-Fischer M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "pfalmer d": {"display": "Pfalmer D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA907066", "pmid": "36878012", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human respiratory syncytial virus Genome sequencing"}]}, "pfann c": {"display": "Pfann C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}]}, "pham d": {"display": "Pham D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "pham lk": {"display": "Pham LK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA255985", "pmid": "25279840", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human saliva, creek water, and synthetic metagenomic samples used in selective DNA isolat…"}]}, "pham tt": {"display": "Pham TT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB57944", "pmid": "40182766", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Diagnosing endocarditis by metagenomics"}]}, "phan md": {"display": "Phan MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893826", "pmid": "38622998", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Culture-independent long read metagenomic diagnostics for genomic surveillance and infect…"}]}, "pharkjaksu s": {"display": "Pharkjaksu S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA483343", "pmid": "30305736", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "philippe c": {"display": "Philippe C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA438436", "pmid": "31270376", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The gut microbiota influence the basal physiological parameters in equine athletes"}]}, "philips a": {"display": "Philips A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA749919", "pmid": "35589762", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An optimized approach to the metagenomic population studies: from sample donation to comm…"}]}, "phillips a": {"display": "Phillips A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "37938270", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "phillips gj": {"display": "Phillips GJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA704056", "pmid": "33672258", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Tracking reservoirs of antimicrobial resistance genes in microbiota using metagenomic Hi-C"}]}, "phillips s": {"display": "Phillips S", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1191223", "pmid": "40813371", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of early life antibiotic and probiotic treatment on gut microbiome and resistome o…"}, {"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA63661", "pmid": "32436839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "phongpreecha t": {"display": "Phongpreecha T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "phoompoung p": {"display": "Phoompoung P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "phornphutkul k": {"display": "Phornphutkul K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "phung q": {"display": "Phung Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "33827948", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "phuphuakrat a": {"display": "Phuphuakrat A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA766776", "pmid": "35909623", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut Microbiome in HIV patients"}]}, "piacentini g": {"display": "Piacentini G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746509", "pmid": "34946200", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota in an infant with propionic acidemia before and after probiotic supplement…"}]}, "piatkowska m": {"display": "Piątkowska M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA943135", "pmid": "37577378", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diarrhoeal-associated gut dysbiosis in cancer and inflammatory bowel disease patients i…"}]}, "piazza m": {"display": "Piazza M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746509", "pmid": "34946200", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota in an infant with propionic acidemia before and after probiotic supplement…"}]}, "piazzesi a": {"display": "Piazzesi A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1013917", "pmid": "37965266", "pos": "first", "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Gut microbiota of an immunocompromised child with chronic cryptosporidiosis"}, {"acc": "PRJNA1036590", "pmid": "38318164", "pos": "first", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "The Pediatric Gut Microbiome and Virome"}]}, "picaud jc": {"display": "Picaud JC", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA273761", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}]}, "piccinno g": {"display": "Piccinno G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}, {"acc": "PRJNA300541", "pmid": "42312244", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "piceno y": {"display": "Piceno Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": "35365713", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}, {"acc": "PRJNA737472", "pmid": null, "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "piceno ym": {"display": "Piceno YM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA278302", "pmid": "26787827", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Alaska oil reservoir Metagenome"}]}, "pichichero me": {"display": "Pichichero ME", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961698", "pmid": "37610205", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Very Early Life Microbiome and Metabolome Correlates with Primary Vaccination Variability…"}]}, "pichler mj": {"display": "Pichler MJ", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB6456", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB97976", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome maturation during weaning"}, {"acc": "PRJEB97980", "pmid": "42203770", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential impact of doxycycline treatment on antimicrobial resistance genes in the enteri…"}, {"acc": "PRJEB98012", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Creeping Fat"}, {"acc": "PRJEB98069", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Distinct Microbial and Resistome Signatures Differentiate Healthy and Inflamed Ileal Pouc…"}]}, "pickard aj": {"display": "Pickard AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "pickard d": {"display": "Pickard D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "picker m": {"display": "Picker M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39474439", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "pickering aj": {"display": "Pickering AJ", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1138246", "pmid": "40755247", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal metagenomes of Peruvian children"}, {"acc": "PRJNA706606", "pmid": "36416733", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of Water Chlorination of Children's Gut Microbiomes in Bangladesh"}, {"acc": "PRJNA726052", "pmid": "35422497", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Effects of drinking water chlorination on childrens intestinal flora and resistomes in Dh…"}]}, "pidgeon r": {"display": "Pidgeon R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA925842", "pmid": "36750571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut bacteria glycan metabolism - Raw sequence reads"}]}, "piedade gj": {"display": "Piedade GJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "41986657", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "piedra pa": {"display": "Piedra PA", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}, {"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1195144", "pmid": null, "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1224818", "pmid": "38361816", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with n…"}]}, "pieknik i": {"display": "Pieknik I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB86263", "pmid": "39218875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gender-affirming hormonal therapy induces a gender-concordant fecal metagenome transition…"}]}, "pierce ka": {"display": "Pierce KA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}]}, "pierdon m": {"display": "Pierdon M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1209098", "pmid": "40597335", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "The effect of dietary zinc on the microbiome and resistome of the gestating sow and neona…"}]}, "piewngam p": {"display": "Piewngam P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA483343", "pmid": "30305736", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "pillai dr": {"display": "Pillai DR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "20976137", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "pilon g": {"display": "Pilon G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "pinar g": {"display": "Piñar G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA655381", "pmid": "33329475", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome of drawings by Leonardo Da Vinci"}]}, "pinares-patino cs": {"display": "Pinares-Patiño CS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "pinchbeck bj": {"display": "Pinchbeck BJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522699", "pmid": "31427729", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}]}, "pinchera b": {"display": "Pinchera B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675110", "pmid": "33659220", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiome signature in COVID-19 positive patients"}]}, "pineda ss": {"display": "Pineda SS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "pinedo r": {"display": "Pinedo R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "pinedo vasquez t": {"display": "Pinedo Vasquez T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA834762", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA837236", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}]}, "pinedo vasquez tn": {"display": "Pinedo Vasquez TN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912682", "pmid": "39727415", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}]}, "pinel n": {"display": "Pinel N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "pinhiero j": {"display": "Pinhiero J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352475", "pmid": "36420990", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "pini n": {"display": "Pini N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "pinnell l": {"display": "Pinnell L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202388", "pmid": "22056233", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}, {"acc": "PRJNA202388", "pmid": "24495694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "pinto f": {"display": "Pinto F", "group": false, "n_studies": 13, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB63351", "pmid": "38104504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neuroblastoma is associated with alterations in gut microbiome composition subsequent to…"}, {"acc": "PRJEB6456", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1140720", "pmid": "41565819", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Modelling human microbiome transmission in a nursery setting"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39407346", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "pinto m": {"display": "Pinto M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "35750157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "36131032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "pinto r": {"display": "Pinto R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "pintus r": {"display": "Pintus R", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA273761", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}]}, "pinzari f": {"display": "Pinzari F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA655381", "pmid": "33329475", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome of drawings by Leonardo Da Vinci"}]}, "piombino-mascali d": {"display": "Piombino-Mascali D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA348754", "pmid": "27939314", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}]}, "piotrowski sj": {"display": "Piotrowski SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "piper hg": {"display": "Piper HG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA311208", "pmid": "27406942", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Severe gut microbiota dysbiosis is associated with poor growth in patients with short bow…"}]}, "piperata ba": {"display": "Piperata BA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA894152", "pmid": "37715296", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Long read infant/young children fecal and environmental samples"}]}, "piperni e": {"display": "Piperni E", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA1140720", "pmid": "41565819", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Modelling human microbiome transmission in a nursery setting"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "pipoli da fonseca j": {"display": "Pipoli Da Fonseca J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "piquer-esteban s": {"display": "Piquer-Esteban S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB39661", "pmid": "41513932", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}, {"acc": "PRJEB62571", "pmid": "41513932", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}]}, "pirags v": {"display": "Pirags V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62817", "pmid": "38868903", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome encoded purine and amino acid pathways present prospective biomarkers for…"}]}, "pireku pk": {"display": "Pireku PK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA683873", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Severe acute respiratory syndrome coronavirus 2 Genome sequencing"}]}, "pirr s": {"display": "Pirr S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52640", "pmid": "37474785", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Longitudinal development of the airway metagenome of preterm very low birth weight infant…"}, {"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "pirttila am": {"display": "Pirttilä AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA543520", "pmid": "31337807", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}]}, "pisco a": {"display": "Pisco A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "piscotta fj": {"display": "Piscotta FJ", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB14383", "pmid": "34551287", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Oral microbiome samples from the Philippines"}, {"acc": "PRJNA275349", "pmid": "34551287", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA48479", "pmid": "34551287", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "pishchany g": {"display": "Pishchany G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA398089", "pmid": "35614211", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}]}, "pitcher a": {"display": "Pitcher A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4261", "pmid": "21593795", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of two depths of the Arabian sea oxygen minimum zone using SOLiD a…"}]}, "pitta d": {"display": "Pitta D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1088536", "pmid": "39030654", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of dietary zinc on the gut microbiome and resistome of the gestating cow and neon…"}]}, "pittaluga s": {"display": "Pittaluga S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}]}, "pittet ac": {"display": "Pittet AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA506325", "pmid": "23102968", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Phages Raw sequence reads"}]}, "pittet lf": {"display": "Pittet LF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55714", "pmid": "37397142", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analyses of the intestinal microbiome from neonates in the MIS BAIR trial"}, {"acc": "PRJEB55714", "pmid": "41853385", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analyses of the intestinal microbiome from neonates in the MIS BAIR trial"}]}, "pitzalis m": {"display": "Pitzalis M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "piubelli c": {"display": "Piubelli C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB121228", "pmid": "38793608", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}, {"acc": "PRJEB121228", "pmid": "41683794", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}]}, "pizzato e": {"display": "Pizzato E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "pizzini jd": {"display": "Pizzini JD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}]}, "pjevac p": {"display": "Pjevac P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1112760", "pmid": "39679616", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic signatures of early life brain damage"}]}, "plainvert c": {"display": "Plainvert C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB77434", "pmid": "37271782", "pos": null, "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Vaginal Microbiota Dynamics in Pregnancy"}]}, "plancade s": {"display": "Plancade S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA438436", "pmid": "31270376", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The gut microbiota influence the basal physiological parameters in equine athletes"}]}, "plante pl": {"display": "Plante PL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "plassais j": {"display": "Plassais J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36461", "pmid": "32360114", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Laparoscopic Roux-en-Y gastric bypass and sleeve gastrectomy on gut microbiota:…"}]}, "plaza onate f": {"display": "Plaza Oñate F", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB43611", "pmid": "35140493", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in gut microbiota during balneotherapy"}, {"acc": "PRJEB50473", "pmid": "35532226", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "PacBio HiFi sequencing of a human fecal metagenome"}, {"acc": "PRJEB52431", "pmid": "36971547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In Vitro Modelling of Oral Microbial Invasion in the Human Colon"}, {"acc": "PRJEB7925", "pmid": "25887914", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Quality control of microbiota metagenomics by k-mer analysis with SOLiD sequencing techno…"}, {"acc": "PRJEB80549", "pmid": "41196055", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterisation of the forehead and armpit skin microbiome of healthy individuals using…"}]}, "plett-torres t": {"display": "Plett-Torres T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA721692", "pmid": "36786619", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "METAGENOMIC ANALYSIS OF MEXICAN CHILDHOOD GUT MICROBIOTA"}]}, "pletz mw": {"display": "Pletz MW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA799199", "pmid": "35256725", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Evaluation of microbiome enrichment and host DNA depletion in human vaginal samples using…"}]}, "plewka j": {"display": "Plewka J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA811790", "pmid": "37816747", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial and viral dispersal along the natural water cycle"}]}, "plichta d": {"display": "Plichta D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685168", "pmid": "34297922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics suggest diverse mechanisms for response to biologic therapies in IBD"}]}, "plichta dr": {"display": "Plichta DR", "group": false, "n_studies": 10, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB46943", "pmid": "35181661", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA398089", "pmid": "35614211", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA400072", "pmid": "41299229", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA559861", "pmid": "32544460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cholesterol Metabolism by Uncultured Human Gut Bacteria Influences Host Cholesterol Level."}, {"acc": "PRJNA615162", "pmid": "41299229", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}, {"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}, {"acc": "PRJNA821542", "pmid": "41299229", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut metagenomes from mothers and their infants in the EDIA study"}]}, "plomp n": {"display": "Plomp N", "group": false, "n_studies": 10, "studies": [{"acc": "PRJDB4176", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1690", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB21528", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB22893", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome impacts response to PD-1 immunotherapy in melanoma patients"}, {"acc": "PRJEB27005", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB39223", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB44737", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJNA231909", "pmid": "39885121", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "39885121", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA48479", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "plotz fb": {"display": "Plötz FB", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA555020", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA613032", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life and effects of early life antibiotics, annotated shotgun s…"}, {"acc": "PRJNA613054", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal resistome in early life and effects of early life antibiotics, annotated shotgun se…"}]}, "plummer pj": {"display": "Plummer PJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA704056", "pmid": "33672258", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Tracking reservoirs of antimicrobial resistance genes in microbiota using metagenomic Hi-C"}]}, "plummer sf": {"display": "Plummer SF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB82926", "pmid": "40431157", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic Supplementation Impacts Gut Microbiota Development in Infants at Risk of Atopy:…"}]}, "plunkett c": {"display": "Plunkett C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "pochan s": {"display": "Pochan S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657818", "pmid": "33377127", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}]}, "poddighe d": {"display": "Poddighe D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1217583", "pmid": "40299456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic predictors of childhood obesity, cross-talk with maternal microflora"}, {"acc": "PRJNA949528", "pmid": "40299456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}]}, "podlesny d": {"display": "Podlesny D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "poeck h": {"display": "Poeck H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "poehlein a": {"display": "Poehlein A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA240141", "pmid": "25208077", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "pogodaeva tv": {"display": "Pogodaeva TV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA875570", "pmid": "38217803", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of microbial communities in gradient zones of the sedimentary strata…"}]}, "pogodina a": {"display": "Pogodina A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA604466", "pmid": "32939372", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota of adolescens with obesity"}]}, "pohl d": {"display": "Pohl D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA728908", "pmid": "35675435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of baseline individuals in a 4.6-year non-alcoholic fatty liver disease pr…"}]}, "poinar d": {"display": "Poinar D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA348754", "pmid": "27939314", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}]}, "poinar h": {"display": "Poinar H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA674643", "pmid": "35474894", "pos": "last", "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Validation of Coronavirus and Sepsis Probe Sets designed using HUBDesign"}]}, "poinar hn": {"display": "Poinar HN", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA348754", "pmid": "27939314", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}, {"acc": "PRJNA352376", "pmid": "28072390", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}]}, "poirier-colame v": {"display": "Poirier-Colame V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "pokka t": {"display": "Pokka T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA543520", "pmid": "31337807", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}]}, "pokutta d": {"display": "Pokutta D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "polage cr": {"display": "Polage CR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "polaki s": {"display": "Polaki S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1344450", "pmid": "41261182", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing of Pila globosa and Associated Freshwater Environment"}]}, "polanczyk gv": {"display": "Polanczyk GV", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1072081", "pmid": "40237336", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Identifying Biomarkers and Trajectories of Typical Neurodevelopment in Children, the BRAI…"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "polis m": {"display": "Polis M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "pollak s": {"display": "Pollak S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1107349", "pmid": "38980166", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Polysaccharide degradation by microbial communities"}, {"acc": "PRJNA1230889", "pmid": "42020426", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}, {"acc": "PRJNA1230889", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}]}, "pollard k": {"display": "Pollard K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": null, "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "pollard ks": {"display": "Pollard KS", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB5224", "pmid": "27803195", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA268964", "pmid": "27803195", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA271618", "pmid": "27803195", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Baboon feces Metagenome"}, {"acc": "PRJNA278393", "pmid": "27803195", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA412411", "pmid": "34163067", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA422434", "pmid": "27803195", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA48479", "pmid": "27803195", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA737472", "pmid": "35365713", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}, {"acc": "PRJNA737472", "pmid": "39122767", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}, {"acc": "PRJNA737472", "pmid": null, "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "polley ec": {"display": "Polley EC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA46333", "pmid": "22310478", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "23050952", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA604820", "pmid": "34936382", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin metagenome from antibiotics treated healthy human subjects"}]}, "polz m": {"display": "Polz M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA669352", "pmid": "33820946", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome assembly for sulfonamide subsistence and the transfer of genetic determinants"}]}, "pomari e": {"display": "Pomari E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB121228", "pmid": "38793608", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}]}, "pomati f": {"display": "Pomati F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675607", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Biogeochemistry study on Lake Tanganyika in Tanzania"}]}, "pomyen y": {"display": "Pomyen Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "pon rt": {"display": "Pon RT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA377096", "pmid": "31530813", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soda lake innocuated bioreactors"}]}, "ponce dm": {"display": "Ponce DM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "ponce-soto gy": {"display": "Ponce-Soto GY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "ponce-toledo ri": {"display": "Ponce-Toledo RI", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1108908", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1108960", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1109334", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}]}, "ponder jb": {"display": "Ponder JB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA605836", "pmid": "32769191", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomics of Enterobacteriaceae from wild owls"}]}, "ponder ma": {"display": "Ponder MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA506850", "pmid": null, "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "USDA Developing Computational Tools To Identify Critical Control Points For Mitigating Th…"}]}, "pongchaikul p": {"display": "Pongchaikul P", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA766776", "pmid": "35909623", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut Microbiome in HIV patients"}, {"acc": "PRJNA966136", "pmid": "38548910", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Vaginal microbiome in women with breast cancer after receiving AI"}]}, "ponnaiah m": {"display": "Ponnaiah M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "ponnudurai r": {"display": "Ponnudurai R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}]}, "pons j": {"display": "Pons J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB39661", "pmid": "41513932", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}, {"acc": "PRJEB62571", "pmid": "41513932", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}]}, "pons n": {"display": "Pons N", "group": false, "n_studies": 20, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}, {"acc": "PRJEB23292", "pmid": "29899081", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysbiosis, including decreased gut microbial richness (MGR) and composition modifications…"}, {"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}, {"acc": "PRJEB34992", "pmid": "33771219", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet and gut microbiome interactions of relevance for symptoms in irritable bowel syndrome"}, {"acc": "PRJEB36461", "pmid": "32360114", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Laparoscopic Roux-en-Y gastric bypass and sleeve gastrectomy on gut microbiota:…"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB43454", "pmid": "35151268", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Long-term diosmectite use does not alter the gut microbiota in adults with chronic diarrh…"}, {"acc": "PRJEB43611", "pmid": "35140493", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in gut microbiota during balneotherapy"}, {"acc": "PRJEB4413", "pmid": "23985875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary intervention impact on gut microbial gene richness based on SOLiD next generation…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB48663", "pmid": "35311446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Increasing the diversity of dietary fibres in a daily-consumed bread modifies gut microbi…"}, {"acc": "PRJEB51635", "pmid": "36604748", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}, {"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}, {"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}, {"acc": "PRJEB60621", "pmid": "37989857", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Is the oral microbiota implicated in taste perception? Investigation of saliva and tongue…"}, {"acc": "PRJEB6314", "pmid": "25496341", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Construction of a dairy microbial genome catalog opens new perspectives for the metagenom…"}, {"acc": "PRJEB7925", "pmid": "25887914", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Quality control of microbiota metagenomics by k-mer analysis with SOLiD sequencing techno…"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "pons-tarin m": {"display": "Pons-Tarín M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1146994", "pmid": "38556088", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Personal traits, lifestyle decisions, and geography shape our dietary intake and conseque…"}, {"acc": "PRJNA1171764", "pmid": "40524271", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut metagenome of IBD patients and healthy controls"}]}, "ponsero aj": {"display": "Ponsero AJ", "group": false, "n_studies": 13, "studies": [{"acc": "PRJEB32631", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB51728", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB52774", "pmid": "36274732", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB52774", "pmid": "37731926", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB52774", "pmid": "38058765", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB6456", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB70237", "pmid": "38838470", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB70237", "pmid": "39092808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB70237", "pmid": "40315414", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB70237", "pmid": null, "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJNA322188", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA352475", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA473126", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA549787", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA595749", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}, {"acc": "PRJNA898628", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "PINGU Fecal samples Metagenome"}]}, "ponsioen cy": {"display": "Ponsioen CY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46777", "pmid": "25836986", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Ulcerative Colitis."}]}, "pontinen ak": {"display": "Pöntinen AK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB32631", "pmid": "36456554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}]}, "ponzoni m": {"display": "Ponzoni M", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB63351", "pmid": "38104504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neuroblastoma is associated with alterations in gut microbiome composition subsequent to…"}, {"acc": "PRJEB6456", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "poole ac": {"display": "Poole AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27308", "pmid": "30974084", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome metagenome analysis of stool samples from individuals with low and high saliva…"}]}, "pop m": {"display": "Pop M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6314", "pmid": "25496341", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Construction of a dairy microbial genome catalog opens new perspectives for the metagenom…"}]}, "pope ce": {"display": "Pope CE", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1177516", "pmid": "40483244", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Changes in Fecal Microbiota in Adults with Cystic Fibrosis with 6 Months of CFTR Modulato…"}, {"acc": "PRJNA314903", "pmid": "24178246", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Pseudomonas Aeruginosa Early CF Adaptive Changes"}, {"acc": "PRJNA510445", "pmid": "31959989", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA510445", "pmid": "34525965", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA516442", "pmid": "30784601", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Depletion of human DNA from complex clinical samples for metagenomic sequencing"}]}, "pope pb": {"display": "Pope PB", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}, {"acc": "PRJNA779578", "pmid": "36503572", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Cervus nippon Raw sequence reads"}]}, "pope rl": {"display": "Pope RL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB102033", "pmid": "41330369", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lantibiotic-producing bacteria impact microbiome resilience and colonization resistance"}]}, "poppe j": {"display": "Poppe J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177813", "pmid": "39796584", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "2FL age specific bifidobacterium effect"}]}, "porcari s": {"display": "Porcari S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA300541", "pmid": "42312244", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "porcellato d": {"display": "Porcellato D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA950968", "pmid": "38054728", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "HoliCow"}]}, "porcelli mc": {"display": "Porcelli MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "porco tc": {"display": "Porco TC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "poriya p": {"display": "Poriya P", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB26614", "pmid": "31754151", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Khambhat"}, {"acc": "PRJEB26615", "pmid": "31754151", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pelagic sediment metagenome of Gulf of Kutch"}]}, "porotto m": {"display": "Porotto M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29970463", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "poroyko v": {"display": "Poroyko V", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA60717", "pmid": "21191099", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomic analysis of infant stool sample"}, {"acc": "PRJNA61745", "pmid": "21191099", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Strain-resolved community genomic analysis of gut microbial colonization in a premature i…"}]}, "porsche ce": {"display": "Porsche CE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52295", "pmid": "38117587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Precocious infant gut microbiome reprograms enterocytes and promotes childhood obesity ri…"}, {"acc": "PRJNA737472", "pmid": "39122767", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "porter ck": {"display": "Porter CK", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA698223", "pmid": "36470885", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "TD Cusco travelers study"}, {"acc": "PRJNA945408", "pmid": "38085102", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prev…"}]}, "porter ja": {"display": "Porter JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "portillo ja": {"display": "Portillo JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA604820", "pmid": "34936382", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin metagenome from antibiotics treated healthy human subjects"}]}, "portlock t": {"display": "Portlock T", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "posada e": {"display": "Posada E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "pose e": {"display": "Pose E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}]}, "posma jm": {"display": "Posma JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473348", "pmid": "36217535", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effect of bariatric surgery on the faecal metagenome"}]}, "pospieszny l": {"display": "Pospieszny Ł", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "postai d": {"display": "Postai D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}]}, "posth c": {"display": "Posth C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37508", "pmid": "32528126", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "A treponemal genome from an historic plague victim supports recent emergence of yaws and…"}]}, "postow m": {"display": "Postow M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA946744", "pmid": "39666007", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Homo sapiens metagenomic sequences"}]}, "potapenko o": {"display": "Potapenko O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "potapov sa": {"display": "Potapov SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA547700", "pmid": "31671744", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lake Baikal Viromes Raw sequence reads"}]}, "potdar rd": {"display": "Potdar RD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1445932", "pmid": "42669658", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of a complementary feeding intervention on the gut microbiota in 12-18-month- old…"}]}, "pototschnig i": {"display": "Pototschnig I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "potts cc": {"display": "Potts CC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "potts r": {"display": "Potts R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573108", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Sedimentary DNA from Mubwindi Swamp"}]}, "poulain j": {"display": "Poulain J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "poulsen cs": {"display": "Poulsen CS", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB46943", "pmid": "41387423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB51635", "pmid": "36604748", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}]}, "povoas d": {"display": "Póvoas D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "powell md": {"display": "Powell MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1233203", "pmid": null, "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Microbiome of recirculating aquaculture systems under different particle loads (MikroRAS)"}]}, "power rc": {"display": "Power RC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}]}, "power uf": {"display": "Power UF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1080233", "pmid": "39214237", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Breathing Together severe wheeze and asthma cohort"}]}, "poyart c": {"display": "Poyart C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB77434", "pmid": "37271782", "pos": null, "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Vaginal Microbiota Dynamics in Pregnancy"}]}, "poyet m": {"display": "Poyet M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA544527", "pmid": "31477907", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}]}, "pozo f": {"display": "Pozo F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB71847", "pmid": "38785596", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Gut and respiratory tract microbiota in children younger than 12 months hospitalised for…"}]}, "pozuelo m": {"display": "Pozuelo M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA851554", "pmid": "34938418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomes of the gut microbiota of CD patients that required resection from a Belgian c…"}]}, "pozzi c": {"display": "Pozzi C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "prada po": {"display": "Prada PO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA894691", "pmid": "37082122", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Maternal exposure to air pollution changes gut microbiota in mice"}]}, "pradeep a": {"display": "Pradeep A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "pradhan m": {"display": "Pradhan M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42304", "pmid": "31843589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differences in Fecal Microbiomes and Metabolomes of People With vs Without Irritable Bowe…"}]}, "prado na": {"display": "Prado NA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573108", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Sedimentary DNA from Mubwindi Swamp"}]}, "praebel k": {"display": "Præbel K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "pramateftaki p": {"display": "Pramateftaki P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA781406", "pmid": "35444202", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Vanishing Glaciers Project"}]}, "pranata m": {"display": "Pranata M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45443", "pmid": "35485368", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}]}, "prandovszky e": {"display": "Prandovszky E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1044118", "pmid": "38061464", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human oral and gut microbiome in first episode psychosis patients"}]}, "prasad br": {"display": "Prasad BR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1344450", "pmid": "41261182", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing of Pila globosa and Associated Freshwater Environment"}]}, "prasad honap t": {"display": "Prasad Honap T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}]}, "prasad r": {"display": "Prasad R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "prasanchit p": {"display": "Prasanchit P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA966136", "pmid": "38548910", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Vaginal microbiome in women with breast cancer after receiving AI"}]}, "prast-nielsen s": {"display": "Prast-Nielsen S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37731", "pmid": "39015337", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}]}, "pratap s": {"display": "Pratap S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1010809", "pmid": "37674718", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Role of P. gingivalis in microbial diversity and composition of dental plaque"}, {"acc": "PRJNA1010809", "pmid": "38230927", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Role of P. gingivalis in microbial diversity and composition of dental plaque"}]}, "pratas d": {"display": "Pratas D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA924035", "pmid": "36951096", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Unmasking the Tissue-Resident Eukaryotic DNA virome in Humans"}]}, "pratscher j": {"display": "Pratscher J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522699", "pmid": "31427729", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}]}, "praveen p": {"display": "Praveen P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB2778", "pmid": "26399409", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}]}, "predires study group": {"display": "PrediRes study group", "group": true, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "preidis ga": {"display": "Preidis GA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA870588", "pmid": "36843227", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic of preterm infants with cholestasis"}]}, "preiss p": {"display": "Preiss P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}]}, "prendergast aj": {"display": "Prendergast AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB51728", "pmid": "39341154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "prendki v": {"display": "Prendki V", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB40995", "pmid": "34492446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of antibiotic duration on the intestinal microbiota and resistome"}, {"acc": "PRJEB81450", "pmid": "40562730", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Streptococcus gordonii endocarditis"}]}, "prentice am": {"display": "Prentice AM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB15633", "pmid": "28079170", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJEB28671", "pmid": "34972822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A_novel_nano_iron_supplement__IHAT__to_safely_combact_iron_deficiency_and_anemia"}, {"acc": "PRJEB28671", "pmid": "41387413", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A_novel_nano_iron_supplement__IHAT__to_safely_combact_iron_deficiency_and_anemia"}]}, "prentice bm": {"display": "Prentice BM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "prescher a": {"display": "Prescher A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB66169", "pmid": "41540446", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient DNA study provides clues to leprosy susceptibility in medieval Europe"}]}, "prescott sl": {"display": "Prescott SL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1452547", "pmid": "42129350", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chlorinated Water Effects on Infant Gut Microbiota"}]}, "press mo": {"display": "Press MO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21624", "pmid": "29491419", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of the rumen of Scottish cattle."}]}, "prestedge j": {"display": "Prestedge J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "preston cm": {"display": "Preston CM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA679730", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2018"}, {"acc": "PRJNA702522", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2019"}]}, "prete a": {"display": "Prete A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA525982", "pmid": "30948795", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transpl…"}, {"acc": "PRJNA914532", "pmid": "36639555", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "Levofloxacin prophylaxis and parenteral nutrition have a detrimental effect on intestinal…"}]}, "prevot g": {"display": "Prevot G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA371487", "pmid": "28715422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Leishmania RNA Virus Genomics'' study from French Guiana"}]}, "priami c": {"display": "Priami C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB2778", "pmid": "26399409", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}]}, "pribyl a": {"display": "Pribyl A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156595", "pmid": "39827146", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics: a new frontier for routine pathology testing of gastrointestinal pathogens"}]}, "pribyl al": {"display": "Pribyl AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1200893", "pmid": "41809988", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}]}, "price ca": {"display": "Price CA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "price ce": {"display": "Price CE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA955235", "pmid": "39945545", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}]}, "price dj": {"display": "Price DJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28671", "pmid": "34972822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A_novel_nano_iron_supplement__IHAT__to_safely_combact_iron_deficiency_and_anemia"}]}, "price lb": {"display": "Price LB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "price td": {"display": "Price TD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "prieme a": {"display": "Priemé A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "prieto m": {"display": "Prieto M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39407346", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "prifti e": {"display": "Prifti E", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB23292", "pmid": "29899081", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysbiosis, including decreased gut microbial richness (MGR) and composition modifications…"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB4413", "pmid": "23985875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary intervention impact on gut microbial gene richness based on SOLiD next generation…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}]}, "prill rj": {"display": "Prill RJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "prince al": {"display": "Prince AL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1071720", "pmid": "38572716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FECBUD Study Fecal Metagenomes"}, {"acc": "PRJNA1121316", "pmid": "39747680", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}]}, "prins jr": {"display": "Prins JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "priscu jc": {"display": "Priscu JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884026", "pmid": "36724220", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic investigation of lake Issyk-Kul, Kyrgyzstan"}]}, "pritt bs": {"display": "Pritt BS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA518922", "pmid": "31577814", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metegenomic sequencing of blood from patients with vector-borne diseases"}]}, "probert ws": {"display": "Probert WS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1261853", "pmid": "38816345", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia sp. CA6269 genome sequencing from clinical and environmental samples"}]}, "probst aj": {"display": "Probst AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA811790", "pmid": "37816747", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial and viral dispersal along the natural water cycle"}]}, "proctor dm": {"display": "Proctor DM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1369410", "pmid": "42242497", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics sequencing from patients with CD4 lymphopenia"}, {"acc": "PRJNA672955", "pmid": "34155414", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}]}, "program collaborators for environmental influences on child health outcomes": {"display": "program collaborators for Environmental Influences on Child Health Outcomes", "group": true, "n_studies": 3, "studies": [{"acc": "PRJEB46659", "pmid": "40241748", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJNA296814", "pmid": "38760865", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA695570", "pmid": "38760865", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "prombutara p": {"display": "Prombutara P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA766776", "pmid": "35909623", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut Microbiome in HIV patients"}]}, "prongay k": {"display": "Prongay K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB5224", "pmid": "38182754", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA546004", "pmid": "31451108", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Maturation of the infant rhesus macaque (Macaca mulatta) gut microbiome and its role in t…"}, {"acc": "PRJNA729051", "pmid": "34158595", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Growth faltering regardless of chronic diarrhea is associated with mucosal immune dysfunc…"}]}, "proquitte h": {"display": "Proquitté H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "province ma": {"display": "Province MA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}, {"acc": "PRJNA259274", "pmid": "25568281", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Wake Forest Vervet Microbiome Project"}]}, "pruden a": {"display": "Pruden A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA506850", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "USDA Developing Computational Tools To Identify Critical Control Points For Mitigating Th…"}]}, "pruijm m": {"display": "Pruijm M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43505", "pmid": "34535959", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut barrier and microbiota changes with glycine and branched chain amino acids supplement…"}]}, "pruikkonen h": {"display": "Pruikkonen H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA543520", "pmid": "31337807", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}]}, "pruss km": {"display": "Pruss KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}]}, "prusty g": {"display": "Prusty G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1344450", "pmid": "41261182", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing of Pila globosa and Associated Freshwater Environment"}]}, "pryszlak a": {"display": "Pryszlak A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}]}, "pucci n": {"display": "Pucci N", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "39866568", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB66728", "pmid": "39866568", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Priority effects, nutrition and HMO-metabolism drive Bifidobacterium longum subspecies dy…"}, {"acc": "PRJEB88622", "pmid": "41785249", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Functional adaptations and metabolic interactions of undescribed Streptococcus and Rothia…"}, {"acc": "PRJNA322188", "pmid": "39866568", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA352475", "pmid": "39866568", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA475246", "pmid": "39866568", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "pudlo na": {"display": "Pudlo NA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA209131", "pmid": "23976882", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacter…"}]}, "puebla-barragan s": {"display": "Puebla-Barragan S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "puelles vg": {"display": "Puelles VG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "puente a": {"display": "Puente A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39407346", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "pujianto da": {"display": "Pujianto DA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1077459", "pmid": "38883202", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Trio Whole Exome Sequencing of Rare Disease"}]}, "pujolassos m": {"display": "Pujolassos M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "pukall r": {"display": "Pukall R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}, {"acc": "PRJEB26596", "pmid": "29051233", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}]}, "pullenayegum e": {"display": "Pullenayegum E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "puncochar m": {"display": "Punčochář M", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB63351", "pmid": "38104504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neuroblastoma is associated with alterations in gut microbiome composition subsequent to…"}, {"acc": "PRJNA1140720", "pmid": "41565819", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Modelling human microbiome transmission in a nursery setting"}, {"acc": "PRJNA300541", "pmid": "42312244", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}]}, "puopolo k": {"display": "Puopolo K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA903921", "pmid": "40469735", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Mycobiome Maturation and Its Determinants during Infancy: A Comparison of Shotgun Met…"}]}, "pupacdi b": {"display": "Pupacdi B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "pupo-ledo i": {"display": "Pupo-Ledo I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55075", "pmid": "38524774", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Molecular and phylogenetic characterization of the monkeypox outbreak in Andalusia, Spain"}]}, "purbojati rw": {"display": "Purbojati RW", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}, {"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "purkayastha s": {"display": "Purkayastha S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473348", "pmid": "36217535", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effect of bariatric surgery on the faecal metagenome"}]}, "pushalkar s": {"display": "Pushalkar S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}]}, "pust mm": {"display": "Pust MM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB38221", "pmid": "33319812", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Airway metagenome of healthy infants and infants with cystic fibrosis"}, {"acc": "PRJEB52640", "pmid": "37474785", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Longitudinal development of the airway metagenome of preterm very low birth weight infant…"}]}, "putignani l": {"display": "Putignani L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1013917", "pmid": "37965266", "pos": "last", "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Gut microbiota of an immunocompromised child with chronic cryptosporidiosis"}, {"acc": "PRJNA1036590", "pmid": "38318164", "pos": "last", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "The Pediatric Gut Microbiome and Virome"}]}, "pyl pt": {"display": "Pyl PT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}]}, "pyoria l": {"display": "Pyöriä L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA924035", "pmid": "36951096", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Unmasking the Tissue-Resident Eukaryotic DNA virome in Humans"}]}, "pyykko je": {"display": "Pyykkö JE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "qamar h": {"display": "Qamar H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "qi j": {"display": "Qi J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA734860", "pmid": "32258950", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}]}, "qi m": {"display": "Qi M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40662", "pmid": "34675897", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Deep (Meta)genomics and (Meta)transcriptome Analyses of Fungal and Bacteria Consortia Fro…"}]}, "qi x": {"display": "Qi X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1119243", "pmid": "38947127", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbial Metabolism Analysis in the Cecum of New Zealand Rabbits under Short-Term Fatten…"}]}, "qian l": {"display": "Qian L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}, {"acc": "PRJNA728908", "pmid": "35675435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of baseline individuals in a 4.6-year non-alcoholic fatty liver disease pr…"}]}, "qian q": {"display": "Qian Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}]}, "qian w": {"display": "Qian W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA427478", "pmid": "30107526", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pomacea canaliculata isolate:SZHN2017 Genome sequencing and assembly"}]}, "qian x": {"display": "Qian X", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1338803", "pmid": "41421358", "pos": null, "reason_code": "host_synthetic", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of faecal fermentation in vitro"}, {"acc": "PRJNA422434", "pmid": "41421358", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "qian y": {"display": "Qian Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1127293", "pmid": "39065200", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "fecal microbial composition in Parkinson's disease"}]}, "qiang c": {"display": "Qiang C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961946", "pmid": "37386612", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Human Genome sequencing and assembly"}]}, "qiao s": {"display": "Qiao S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA775062", "pmid": "42326398", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Landscapes of bacterial, viral and metabolic signatures and their interaction in early-we…"}, {"acc": "PRJNA847006", "pmid": "42326398", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}]}, "qiao x": {"display": "Qiao X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA427478", "pmid": "30107526", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pomacea canaliculata isolate:SZHN2017 Genome sequencing and assembly"}]}, "qin f": {"display": "Qin F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}]}, "qin h": {"display": "Qin H", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "qin j": {"display": "Qin J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "qin l": {"display": "Qin L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA778020", "pmid": "35089209", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Clinical metagenomic sequencing for rapid diagnosis of Neonatal meningitis caused by Urea…"}]}, "qin n": {"display": "Qin N", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "qin w": {"display": "Qin W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}]}, "qin x": {"display": "Qin X", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1224818", "pmid": "38361816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with n…"}, {"acc": "PRJNA215106", "pmid": "24236055", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA338014", "pmid": "27795347", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28379561", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29564400", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30576430", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "qin y": {"display": "Qin Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "qiu q": {"display": "Qiu Q", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}, {"acc": "PRJNA779578", "pmid": "36503572", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Cervus nippon Raw sequence reads"}]}, "qiu s": {"display": "Qiu S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA973819", "pmid": "38188910", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Pathogenetic characterization of a Micrococcus luteus strain isolated from an infant"}]}, "qiu x": {"display": "Qiu X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA312041", "pmid": "27226242", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human fecal raw sequence reads"}]}, "qu b": {"display": "Qu B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "qu e": {"display": "Qu E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1052084", "pmid": "38260404", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intraspecies dynamics underlie the apparent stability of two important skin microbiome sp…"}, {"acc": "PRJNA1052084", "pmid": "40315837", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intraspecies dynamics underlie the apparent stability of two important skin microbiome sp…"}]}, "qu j": {"display": "Qu J", "group": false, "n_studies": 5, "studies": [{"acc": "PRJDB40947", "pmid": "38745649", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Evaluation of the effect of Fangyu acid lowering granules on improving Hyperuricemia (PRJ…"}, {"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}, {"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}, {"acc": "PRJNA821338", "pmid": "36259361", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial pathogens and antimicrobial resistance diagnosis workflow using Nanopore adapti…"}, {"acc": "PRJNA869513", "pmid": "36259361", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An ultra-sensitive bacterial pathogen and antimicrobial resistance diagnosis workflow usi…"}]}, "qu w": {"display": "Qu W", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA730640", "pmid": "34262484", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "qu y": {"display": "Qu Y", "group": false, "n_studies": 46, "studies": [{"acc": "PRJEB24006", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB27928", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB32631", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "38424077", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB36820", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB6456", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9524", "pmid": "38424077", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Expanded Enteric Virome and Altered Bacterial Microbiome in Acquired Immunodeficiency Syn…"}, {"acc": "PRJNA272371", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA301903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA385126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA387903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Intestinal Virome Changes Precede Autoimmunity in Type I Diabetes Susceptible Children"}, {"acc": "PRJNA390646", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA407341", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA436562", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA446038", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA491626", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut virome of Cameroonians living in close proximity with bats"}, {"acc": "PRJNA521878", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA545408", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Longitudinal study of the human gut virome"}, {"acc": "PRJNA555020", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA562766", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA657818", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "quaranta g": {"display": "Quaranta G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA643802", "pmid": "32859933", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "FMT for diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal…"}]}, "quer j": {"display": "Quer J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": "last", "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "quercia s": {"display": "Quercia S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA278393", "pmid": "27462302", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}]}, "quevrin c": {"display": "Quevrin C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "quezado m": {"display": "Quezado M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156457", "pmid": "39731681", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acanthamoeba sequencing"}]}, "quick j": {"display": "Quick J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1775", "pmid": "23571589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diagnostic Metagenomics: A Culture-Independent Approach to the Investigation of Bacterial…"}]}, "quijada nm": {"display": "Quijada NM", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB74322", "pmid": "40603287", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJNA1227883", "pmid": "40603287", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}, {"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "quince c": {"display": "Quince C", "group": false, "n_studies": 11, "studies": [{"acc": "PRJEB15371", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB1775", "pmid": "23571589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diagnostic Metagenomics: A Culture-Independent Approach to the Investigation of Bacterial…"}, {"acc": "PRJEB8179", "pmid": "25586220", "pos": "last", "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Synthetic community metagenomes study"}, {"acc": "PRJNA231909", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "30661755", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA356102", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA43253", "pmid": "20363958", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human fecal microbiome"}, {"acc": "PRJNA48479", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA504891", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA701961", "pmid": "37069665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA701961", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "quinn jv": {"display": "Quinn JV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "quinn ra": {"display": "Quinn RA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}]}, "quinquis b": {"display": "Quinquis B", "group": false, "n_studies": 14, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB43454", "pmid": "35151268", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Long-term diosmectite use does not alter the gut microbiota in adults with chronic diarrh…"}, {"acc": "PRJEB43611", "pmid": "35140493", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in gut microbiota during balneotherapy"}, {"acc": "PRJEB4413", "pmid": "23985875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary intervention impact on gut microbial gene richness based on SOLiD next generation…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB51635", "pmid": "36604748", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}, {"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}, {"acc": "PRJEB52431", "pmid": "36971547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In Vitro Modelling of Oral Microbial Invasion in the Human Colon"}, {"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}, {"acc": "PRJEB59994", "pmid": "37892187", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evaluation of an Adapted Semi-Automated DNA Extraction for Human Salivary Shotgun Metagen…"}, {"acc": "PRJEB60621", "pmid": "37989857", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Is the oral microbiota implicated in taste perception? Investigation of saliva and tongue…"}, {"acc": "PRJEB80549", "pmid": "41196055", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterisation of the forehead and armpit skin microbiome of healthy individuals using…"}, {"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "quintana-murci l": {"display": "Quintana-Murci L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "quintanilha dos santos mb": {"display": "Quintanilha Dos Santos MB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}]}, "quintela-baluja m": {"display": "Quintela-Baluja M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807808", "pmid": "37080313", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microalgae-bacteria system for domestic wastewater treatment"}]}, "qureshi a": {"display": "Qureshi A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "raack e": {"display": "Raack E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "36220843", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": "37938270", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "raangs gc": {"display": "Raangs GC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB23207", "pmid": "29468143", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic characterization of the human intestinal microbiota in faecal samples from ST…"}]}, "rabausch u": {"display": "Rabausch U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA240141", "pmid": "25208077", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "rabibhadana s": {"display": "Rabibhadana S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "rabinowitz k": {"display": "Rabinowitz K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA524170", "pmid": "31605691", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistant microbiome underlies antibiotic therapy in pouchitis"}]}, "rackaityte e": {"display": "Rackaityte E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "radey m": {"display": "Radey M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA285502", "pmid": "26288277", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiota transplantation (FMT) for ulcerative colitis"}, {"acc": "PRJNA314903", "pmid": "24178246", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Pseudomonas Aeruginosa Early CF Adaptive Changes"}]}, "radey mc": {"display": "Radey MC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA516442", "pmid": "30784601", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Depletion of human DNA from complex clinical samples for metagenomic sequencing"}, {"acc": "PRJNA860728", "pmid": "36121157", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "GenCap-Seq Selectively Enriches Bacterial DNA and Enables Genome-wide Measurement of Intr…"}]}, "radmacher p": {"display": "Radmacher P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884103", "pmid": "37134153", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}]}, "rae km": {"display": "Rae KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1076911", "pmid": "38995243", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant and maternal gut microbiomes"}]}, "raes j": {"display": "Raes J", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}, {"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA693793", "pmid": "35320047", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BaBel Infant Gut Virome Raw Data"}, {"acc": "PRJNA804384", "pmid": "37052201", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Inflammatory bowel disease patients undergoing biological therapy"}]}, "raethong n": {"display": "Raethong N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA637175", "pmid": "33668840", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}]}, "raffaele g": {"display": "Raffaele G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB72531", "pmid": "38424099", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prebiotic intervention for muscle function and cognition"}]}, "raffaeta r": {"display": "Raffaetà R", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB6456", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "raffatellu m": {"display": "Raffatellu M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}, {"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "raftery d": {"display": "Raftery D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA510445", "pmid": "34525965", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}]}, "ragnarsdottir o": {"display": "Ragnarsdottir O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}]}, "rahim mk": {"display": "Rahim MK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "rahlff j": {"display": "Rahlff J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA811790", "pmid": "37816747", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial and viral dispersal along the natural water cycle"}, {"acc": "PRJNA950101", "pmid": "39449105", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomes from aquatic ecosystems of the Central Arctic"}]}, "rahman m": {"display": "Rahman M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB42539", "pmid": "34756056", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "FUT2/FUT3 genes sequences and nasopharyngeal shotgun metagenomics from the Microbiota and…"}, {"acc": "PRJNA806984", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}]}, "rahman sf": {"display": "Rahman SF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396794", "pmid": "29359195", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}]}, "rahman t": {"display": "Rahman T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1295573", "pmid": "41760690", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The intestinal microbiome of patients with newly diagnosed invasive breast cancer and duc…"}]}, "rahn g": {"display": "Rahn G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}]}, "rahnavard a": {"display": "Rahnavard A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA398089", "pmid": "35614211", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}]}, "rahnavard g": {"display": "Rahnavard G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA275349", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA48479", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "rahpaya ss": {"display": "Rahpaya SS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB5383", "pmid": "28095784", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of a novel bovine enterovirus possessing highly divergent amino acid seque…"}]}, "raidal sr": {"display": "Raidal SR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA596855", "pmid": "31383310", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Disease surveillance in wild Victorian cacatuids"}]}, "raimo m": {"display": "Raimo M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB43581", "pmid": "34295911", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}, {"acc": "PRJEB44898", "pmid": "34295911", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hyperammonemia syndrome following lung transplantation."}]}, "raimondi s": {"display": "Raimondi S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "38047279", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "42039832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "42039832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "rainetova p": {"display": "Rainetova P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445932", "pmid": "29297933", "pos": "last", "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}]}, "rainteau d": {"display": "Rainteau D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "rajagopala s": {"display": "Rajagopala S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1502892", "pmid": "40490486", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Associations between antibiotic exposure intensity, intestinal microbiome perturbations,…"}]}, "rajar p": {"display": "Rajar P", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1009231", "pmid": "39019886", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Born in the twilight of antbiotics"}, {"acc": "PRJNA876384", "pmid": "36620054", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Microbial DNA extraction of high-host content and low biomass samples: optimized protocol…"}]}, "rajashekara g": {"display": "Rajashekara G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "32351922", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "33553097", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "41185061", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "rajeev s": {"display": "Rajeev S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019500", "pmid": "39054413", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}]}, "rajesh t": {"display": "Rajesh T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "rajpal u": {"display": "Rajpal U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA946744", "pmid": "39666007", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Homo sapiens metagenomic sequences"}]}, "rakoczy m": {"display": "Rakoczy M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA749919", "pmid": "35589762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An optimized approach to the metagenomic population studies: from sample donation to comm…"}]}, "rakow n": {"display": "Rakow N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1312123", "pmid": "41203618", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Development of the preterm infant gut and gastric residuals microbiome"}]}, "ramakrishna p": {"display": "Ramakrishna P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1187541", "pmid": "39753133", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Raw metagenomics sequencing from human hippocampi."}]}, "ramakrishnan g": {"display": "Ramakrishnan G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60931", "pmid": "37735787", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Mycoplasma genitalium endocarditis"}]}, "ramani s": {"display": "Ramani S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "39282326", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "ramaswamy r": {"display": "Ramaswamy R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1236379", "pmid": "40886152", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Infant BBB"}, {"acc": "PRJNA504891", "pmid": "41118772", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "ramay hr": {"display": "Ramay HR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1055141", "pmid": "42336834", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool shallow shotgun sequencing (ANTIBIO)"}]}, "ramazzotti m": {"display": "Ramazzotti M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1252002", "pmid": "40615445", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Testing the limits of short-reads metagenomic classifications programs in waste water tre…"}, {"acc": "PRJNA1311054", "pmid": "41242561", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "AGS Pilot Scale Microbiome (Florence IDRO.SMART)"}]}, "rambaut a": {"display": "Rambaut A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "ramchandani ms": {"display": "Ramchandani MS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "30383234", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "ramilo o": {"display": "Ramilo O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1148144", "pmid": "40128855", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Biosignatures of late-onset extraintestinal bacterial infections"}]}, "ramirez da": {"display": "Ramirez DA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "ramirez de molina a": {"display": "Ramírez de Molina A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "ramirez rmg": {"display": "Ramírez RMG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "ramiro-garcia j": {"display": "Ramiro-Garcia J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA379120", "pmid": "30504906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}]}, "ramond j": {"display": "Ramond J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "ramond jb": {"display": "Ramond JB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA930765", "pmid": "36869137", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia felis reads and MAG recovered from a child who lived in southern Africa 2000 y…"}]}, "ramondetta lm": {"display": "Ramondetta LM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "ramos e": {"display": "Ramos E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27927929", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "ramos rjjf": {"display": "Ramos RJJF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}]}, "ramos-parra pa": {"display": "Ramos-Parra PA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1260751", "pmid": "41536238", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal Obesity Alters Human Milk Oligosaccharides Content and Promotes Early Acquisitio…"}]}, "ramos-tapia i": {"display": "Ramos-Tapia I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA446042", "pmid": "37577334", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomic Asthma Chile"}]}, "rampelli s": {"display": "Rampelli S", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB25727", "pmid": "31138673", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The impact of AXOS intake in overweight individuals with metabolic syndrome."}, {"acc": "PRJNA278393", "pmid": "25981789", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA278393", "pmid": "27462302", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA525982", "pmid": "30948795", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transpl…"}, {"acc": "PRJNA877820", "pmid": "32209716", "pos": "first", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}, {"acc": "PRJNA914532", "pmid": "36639555", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "Levofloxacin prophylaxis and parenteral nutrition have a detrimental effect on intestinal…"}]}, "ramsey bw": {"display": "Ramsey BW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA314903", "pmid": "24178246", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Pseudomonas Aeruginosa Early CF Adaptive Changes"}]}, "ramsperger m": {"display": "Ramsperger M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "ranaivo h": {"display": "Ranaivo H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48663", "pmid": "35311446", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Increasing the diversity of dietary fibres in a daily-consumed bread modifies gut microbi…"}]}, "randall az": {"display": "Randall AZ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1320699", "pmid": "42088498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "16S sequencing of infant stool Metagenome"}]}, "rando-segura a": {"display": "Rando-Segura A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "randolph da": {"display": "Randolph DA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542320", "pmid": "31700190", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacteria Genome sequencing and assembly"}]}, "rangel pc": {"display": "Rangel PC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "rani a": {"display": "Rani A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28510", "pmid": "27633952", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diverse virome in kidney transplant patients contains multiple viral subtypes with dist…"}]}, "ranjan r": {"display": "Ranjan R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28510", "pmid": "27633952", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diverse virome in kidney transplant patients contains multiple viral subtypes with dist…"}]}, "rank j": {"display": "Rank J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA484151", "pmid": "31379808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural and Urban infant''s fecal microbiota study"}]}, "rantsiou k": {"display": "Rantsiou K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA636619", "pmid": "34053518", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome (DNAseq) of italian fermented sausages"}]}, "ranucci g": {"display": "Ranucci G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1294276", "pmid": "41019762", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human pegivirus isolate Pegi-ITA-25, complete genome."}]}, "rao d": {"display": "Rao D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}]}, "rao g": {"display": "Rao G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1002114", "pmid": "37823665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Direct prediction of carbapenem-resistance for Pseudomonas aeruginosa by whole genome seq…"}]}, "rao r": {"display": "Rao R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "rao y": {"display": "Rao Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1107349", "pmid": "38980166", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Polysaccharide degradation by microbial communities"}]}, "raoult d": {"display": "Raoult D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "raphenya ar": {"display": "Raphenya AR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA805248", "pmid": "36008821", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Targeted Capture of AMR in Preterm infants after probiotic exposure"}]}, "rapp e": {"display": "Rapp E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB19090", "pmid": "27671352", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}]}, "rasaily r": {"display": "Rasaily R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945262", "pmid": "37067419", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Gut Microbiome in a mother child paired design"}]}, "rascovan n": {"display": "Rascovan N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "rasmussen a": {"display": "Rasmussen A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "38659981", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "rasmussen ja": {"display": "Rasmussen JA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB64334", "pmid": "38294254", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Multi-omics of host-gut microbiota interactions in healthy and parasitized farmed Atlanti…"}, {"acc": "PRJNA943417", "pmid": "37919016", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Six novel misos"}]}, "rasmussen m": {"display": "Rasmussen M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}, {"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "rasmussen ma": {"display": "Rasmussen MA", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "41387423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA715601", "pmid": "38135681", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "38730321", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA916259", "pmid": "38135681", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}, {"acc": "PRJNA916259", "pmid": "40140473", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}]}, "rasmussen s": {"display": "Rasmussen S", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12466", "pmid": "26161690", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Meta-genomic analysis of toilet waste from long distance flights"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB46943", "pmid": "35181661", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB6314", "pmid": "25496341", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Construction of a dairy microbial genome catalog opens new perspectives for the metagenom…"}, {"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}, {"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}, {"acc": "PRJNA812583", "pmid": "36352460", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level metagenomics reveal microbial transfer from donor to infant after fecal micr…"}]}, "rasool o": {"display": "Rasool O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "ratjen a": {"display": "Ratjen A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA530252", "pmid": "32631930", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effect of cycled, inhaled tobramycin on the sputum microbiome in cystic fibrosis"}]}, "rattei t": {"display": "Rattei T", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}, {"acc": "PRJNA240141", "pmid": "25208077", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Elephant feces Metagenome"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "rau a": {"display": "Rau A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA438436", "pmid": "33898524", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The gut microbiota influence the basal physiological parameters in equine athletes"}]}, "rauber c": {"display": "Rauber C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}, {"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "rauscher s": {"display": "Rauscher S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "rautava s": {"display": "Rautava S", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB32631", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB62848", "pmid": "38010080", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, moderate and late preterm infants, probiotic and prebiotic"}, {"acc": "PRJEB6456", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA301903", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA384716", "pmid": "30250208", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA396794", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA532310", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut metagenome"}, {"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "ravel j": {"display": "Ravel J", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJNA208535", "pmid": "40607829", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The daily dynamics of the vaginal microbiota before and after bacterial vaginosis"}, {"acc": "PRJNA774819", "pmid": "35695455", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Highly specialized carbohydrate metabolism capability in Bifidobacterium strain associate…"}, {"acc": "PRJNA776332", "pmid": "35280991", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Altered gut microbiome and fecal immune phenotype in early preterm infants with leaky gut"}]}, "ravenscroft g": {"display": "Ravenscroft G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "ravi a": {"display": "Ravi A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA722408", "pmid": "36076058", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}, {"acc": "PRJNA722408", "pmid": null, "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}]}, "ravishankar s": {"display": "Ravishankar S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA530252", "pmid": "32631930", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effect of cycled, inhaled tobramycin on the sputum microbiome in cystic fibrosis"}]}, "ravizza t": {"display": "Ravizza T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1168703", "pmid": "38485093", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of an epilepsy-linked gut microbiota signature in a pediatric rat model of…"}]}, "rawls jf": {"display": "Rawls JF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "raybaud m": {"display": "Raybaud M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "raygoza garay ja": {"display": "Raygoza Garay JA", "group": false, "n_studies": 27, "studies": [{"acc": "PRJEB10878", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB12449", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Reproducibility of associations between the human gut microbiome and colorectal cancer as…"}, {"acc": "PRJEB24041", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Selective maternal seeding and environment shape the human gut microbiome"}, {"acc": "PRJEB32631", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB33500", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Mediterranean diet intervention in overweight and obese subjects leads to multiple benefi…"}, {"acc": "PRJEB35738", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Clostridium difficile infection patient microbiome"}, {"acc": "PRJEB37249", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Statin therapy is associated with lower prevalence of gut microbiota dysbiosis"}, {"acc": "PRJEB38742", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Imidazole propionate is increased in diabetes and associated with dietary patterns and al…"}, {"acc": "PRJEB45799", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB6070", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6456", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6997", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut and Oral Microbiome Dysbiosis in Rheumatoid Arthritis"}, {"acc": "PRJEB7774", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB9584", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "KCL_twins2"}, {"acc": "PRJNA1019702", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA398089", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA422434", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA447983", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}, {"acc": "PRJNA48479", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA564397", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics Reveals Impact of Geography, Antibiotics and Acute Diarrhoeal Disease on the…"}, {"acc": "PRJNA674880", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Microbiota Restoration Reduces Antibiotic Resistant Bacteria Gut Colonization in Patients…"}, {"acc": "PRJNA685168", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Multi-omics suggest diverse mechanisms for response to biologic therapies in IBD"}, {"acc": "PRJNA705895", "pmid": "42171373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA748262", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}, {"acc": "PRJNA752686", "pmid": "42171373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Profile of the Gut Microbiome of Preterm Infants and its Association to Infan…"}, {"acc": "PRJNA999635", "pmid": "42171373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut Microbiome of isolated villages in rural Honduras"}]}, "raymond f": {"display": "Raymond F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "razia y": {"display": "Razia Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA215106", "pmid": "24236055", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}]}, "read c": {"display": "Read C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445215", "pmid": "29959351", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "read ds": {"display": "Read DS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "34609275", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "read td": {"display": "Read TD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA725416", "pmid": "33996627", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Emory University African American Vaginal, Oral, and Gut Microbiome in Pregnancy Cohort S…"}]}, "recio-fernandez e": {"display": "Recio-Fernández E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819232", "pmid": "35618952", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Integrase Inhibitors on gut and oral microbiome"}]}, "redding le": {"display": "Redding LE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1088536", "pmid": "39030654", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of dietary zinc on the gut microbiome and resistome of the gestating cow and neon…"}, {"acc": "PRJNA1209098", "pmid": "40597335", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "The effect of dietary zinc on the microbiome and resistome of the gestating sow and neona…"}]}, "reddy p": {"display": "Reddy P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "reddy s": {"display": "Reddy S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "redgwell ta": {"display": "Redgwell TA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40108202", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA715601", "pmid": "40108202", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}]}, "redwood aj": {"display": "Redwood AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "reed e": {"display": "Reed E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "reed kd": {"display": "Reed KD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}]}, "reed km": {"display": "Reed KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1252780", "pmid": null, "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Effect of anitbiotic alternatives on cecal microbiome of Salmonella Heidelberg-challenged…"}]}, "reeves d": {"display": "Reeves D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}, {"acc": "PRJNA338014", "pmid": "29281620", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "reeves j": {"display": "Reeves J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "regalado jt": {"display": "Regalado JT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": "40631735", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "regalado rr": {"display": "Regalado RR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": "40631735", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "regev-yochay g": {"display": "Regev-Yochay G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA610982", "pmid": "33308267", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Determinants of S. aureus carriage in the developing infant nasal microbiome"}]}, "regitano lca": {"display": "Regitano LCA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA987743", "pmid": "38163076", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Ruminal and Fecal Microbiomes of Brazilian Nelore Cattle"}, {"acc": "PRJNA987743", "pmid": "39695297", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Ruminal and Fecal Microbiomes of Brazilian Nelore Cattle"}]}, "rehman sf": {"display": "Rehman SF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA562766", "pmid": "33208745", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}]}, "reichart gj": {"display": "Reichart GJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4261", "pmid": "21593795", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of two depths of the Arabian sea oxygen minimum zone using SOLiD a…"}]}, "reid g": {"display": "Reid G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49206", "pmid": "28839072", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}, {"acc": "PRJEB49206", "pmid": "30118385", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}]}, "reid k": {"display": "Reid K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "reijneveld sa": {"display": "Reijneveld SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "reilly er": {"display": "Reilly ER", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "reimer sr": {"display": "Reimer SR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA376566", "pmid": "29925423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}]}, "rein m": {"display": "Rein M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "reinhard k": {"display": "Reinhard K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "reinicke t": {"display": "Reinicke T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "reiss-mandel a": {"display": "Reiss-Mandel A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA610982", "pmid": "33308267", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Determinants of S. aureus carriage in the developing infant nasal microbiome"}]}, "reiter e": {"display": "Reiter E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "relman da": {"display": "Relman DA", "group": false, "n_studies": 7, "studies": [{"acc": "PRJNA1086504", "pmid": "38752784", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gardnerella diversity by metagenomic sequencing in the vaginal microbiome"}, {"acc": "PRJNA288562", "pmid": "26283357", "pos": "last", "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}, {"acc": "PRJNA290380", "pmid": "32728114", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA362245", "pmid": "24169577", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Microbiome assembly across multiple body sites in low-birthweight infants"}, {"acc": "PRJNA362245", "pmid": "28630471", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Microbiome assembly across multiple body sites in low-birthweight infants"}, {"acc": "PRJNA60717", "pmid": "21191099", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomic analysis of infant stool sample"}, {"acc": "PRJNA61745", "pmid": "21191099", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Strain-resolved community genomic analysis of gut microbial colonization in a premature i…"}, {"acc": "PRJNA726636", "pmid": "35382031", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sea otter (Enhydra lutris) Raw sequence reads"}]}, "ren b": {"display": "Ren B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}]}, "ren h": {"display": "Ren H", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB26795", "pmid": "30609941", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJNA1166969", "pmid": "39470277", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Multi-Omics Analysis of the Microbial Profile Characteristics Associated with Pulmonary A…"}, {"acc": "PRJNA323812", "pmid": "27866251", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "wastewater metagenome Genome sequencing"}, {"acc": "PRJNA644022", "pmid": "33891391", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiomes in algae biofilm and activated sludge under comparative operating conditions"}]}, "ren j": {"display": "Ren J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1128723", "pmid": "42311381", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA592843", "pmid": "32100127", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Therapeutic effects of the in vitro cultured human gut microbiota as transplants on alter…"}]}, "ren r": {"display": "Ren R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA336061", "pmid": "28801639", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prevotella enterotype related metagenome sequencing"}]}, "ren w": {"display": "Ren W", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1218236", "pmid": "40144527", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Analysis of Intragastric Administration of Donkey Milk on Mouse Immunity Using Gut Microb…"}, {"acc": "PRJNA237795", "pmid": "35583332", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Swine feces Targeted Locus (Loci)"}]}, "ren x": {"display": "Ren X", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "40763731", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "40763731", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "40763731", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1173239", "pmid": "40763731", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Amino acid competition shapes Acinetobacter baumannii gut carriage"}]}, "ren y": {"display": "Ren Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA427478", "pmid": "30107526", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pomacea canaliculata isolate:SZHN2017 Genome sequencing and assembly"}]}, "ren z": {"display": "Ren Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB28401", "pmid": "37261381", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenome investigation of ocular microbiota of cataract patients with and without type…"}]}, "renault p": {"display": "Renault P", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB4413", "pmid": "23985875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary intervention impact on gut microbial gene richness based on SOLiD next generation…"}, {"acc": "PRJEB6314", "pmid": "25496341", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Construction of a dairy microbial genome catalog opens new perspectives for the metagenom…"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "rengarajan s": {"display": "Rengarajan S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1067813", "pmid": "39731916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C. difficile-associated mouse and human fecal metagenomes"}]}, "renk h": {"display": "Renk H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76913", "pmid": "39881980", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Factors affecting the gut microbiota composition of children with CHD"}]}, "renko m": {"display": "Renko M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA543520", "pmid": "31337807", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}]}, "renne t": {"display": "Renné T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "renu s": {"display": "Renu S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA484151", "pmid": "31379808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural and Urban infant''s fecal microbiota study"}]}, "renukaradhya gj": {"display": "Renukaradhya GJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA484151", "pmid": "31379808", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Rural and Urban infant''s fecal microbiota study"}]}, "renzi g": {"display": "Renzi G", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB20595", "pmid": "30065706", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hepatic brucelloma studied by next generation sequencing"}, {"acc": "PRJEB24753", "pmid": "31448292", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Neisseria meningitidis"}, {"acc": "PRJEB57944", "pmid": "40182766", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Diagnosing endocarditis by metagenomics"}, {"acc": "PRJEB65720", "pmid": "37722530", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acute bacterial meningitis due to Neisseria meningitidis serotype B missed by a multiplex…"}]}, "resch b": {"display": "Resch B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": "29152325", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": "32354144", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": "36906612", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "rescigno m": {"display": "Rescigno M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "resendis-antonio o": {"display": "Resendis-Antonio O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "reshef l": {"display": "Reshef L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA524170", "pmid": "31605691", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistant microbiome underlies antibiotic therapy in pouchitis"}]}, "reske ka": {"display": "Reske KA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1067813", "pmid": "39731916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C. difficile-associated mouse and human fecal metagenomes"}]}, "resonance consortium": {"display": "RESONANCE Consortium", "group": true, "n_studies": 1, "studies": [{"acc": "PRJNA695570", "pmid": "34335499", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "respicio-kingry l": {"display": "Respicio-Kingry L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1198110", "pmid": "40439559", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Clinical infection by Francisella tularensis ssp. holarctica in stranded beluga whales fr…"}]}, "retchless ac": {"display": "Retchless AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "rettedal si": {"display": "Rettedal SI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29052", "pmid": "30505830", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}]}, "reus jb": {"display": "Reus JB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA635738", "pmid": "33727396", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Breast milk Microbiome/Virome of HIV+ Kenyan Women is Not Altered by Immunosuppression"}]}, "reuteler g": {"display": "Reuteler G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA506325", "pmid": "23102968", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Phages Raw sequence reads"}]}, "reutrakul s": {"display": "Reutrakul S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA766776", "pmid": "35909623", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut Microbiome in HIV patients"}]}, "revill pa": {"display": "Revill PA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28671", "pmid": "34972822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A_novel_nano_iron_supplement__IHAT__to_safely_combact_iron_deficiency_and_anemia"}]}, "rewers m": {"display": "Rewers M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA416160", "pmid": "39856391", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "The Environmental Determinants of Diabetes in the Young (TEDDY) Parent Study"}]}, "rewers mj": {"display": "Rewers MJ", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA268964", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA392180", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA485056", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA497734", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "rey fe": {"display": "Rey FE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA39859", "pmid": "20368178", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Analyses of the human gut microbiome after transplantation into germ-free mice"}]}, "rey redondo e": {"display": "Rey Redondo E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1087008", "pmid": "39236827", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic and Metatranscriptomic data of Marine Microbes in Coastal Waters of the South…"}]}, "rey-stolle mf": {"display": "Rey-Stolle MF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991269", "pmid": "38589361", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "reyes a": {"display": "Reyes A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9818", "pmid": "26351661", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "The gut DNA viromes of Malawian twins discordant for severe acute undernutrition"}]}, "reyes ag": {"display": "Reyes AG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1084251", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tryptophan metabolites in fecal samples from healthy humans"}]}, "reyes-madrid m": {"display": "Reyes-Madrid M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB104199", "pmid": "42531397", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "The genomic identity of early smallpox in South America"}]}, "reyman m": {"display": "Reyman M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA555020", "pmid": "31676793", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "35173154", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "36380002", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA613032", "pmid": "35173154", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life and effects of early life antibiotics, annotated shotgun s…"}, {"acc": "PRJNA613054", "pmid": "35173154", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal resistome in early life and effects of early life antibiotics, annotated shotgun se…"}]}, "reynaldos-grandon kl": {"display": "Reynaldos-Grandón KL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA446042", "pmid": "37577334", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomic Asthma Chile"}]}, "reynolds aj": {"display": "Reynolds AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701480", "pmid": "34186487", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vaginal seeding in babies born by caesarean section (ECOBABe trial) - shotgun metagenomic…"}]}, "reynolds cg": {"display": "Reynolds CG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA787952", "pmid": "35239511", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}]}, "reynolds gz": {"display": "Reynolds GZ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1236482", "pmid": "42020750", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Short-term clinical evolution of Enterococcus faecium"}]}, "rho m": {"display": "Rho M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB33013", "pmid": "36504822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB55713", "pmid": "36504822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Child gut microbiome"}]}, "rhoades n": {"display": "Rhoades N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA546004", "pmid": "31451108", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Maturation of the infant rhesus macaque (Macaca mulatta) gut microbiome and its role in t…"}]}, "rhoades ns": {"display": "Rhoades NS", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB5224", "pmid": "38182754", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA729051", "pmid": "34158595", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Growth faltering regardless of chronic diarrhea is associated with mucosal immune dysfunc…"}]}, "ribeiro mc": {"display": "Ribeiro MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA846723", "pmid": "39527605", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of oral administration of Bifidobacterium animalis subsp. lactis HN019 on the tre…"}]}, "ricci l": {"display": "Ricci L", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA1140720", "pmid": "41565819", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Modelling human microbiome transmission in a nursery setting"}, {"acc": "PRJNA300541", "pmid": "42312244", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "rice bl": {"display": "Rice BL", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB15371", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJNA231909", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "30661755", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA356102", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA48479", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA504891", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "rich sa": {"display": "Rich SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}]}, "richard a": {"display": "Richard A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "richard c": {"display": "Richard C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "richardson ba": {"display": "Richardson BA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1045584", "pmid": "39185682", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of SARS-CoV-2 in stool sample from women living with HIV and HIV-negative women an…"}]}, "richardson m": {"display": "Richardson M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14474", "pmid": "28539477", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}]}, "richmond p": {"display": "Richmond P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "richter m": {"display": "Richter M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA158313", "pmid": "23251564", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Iberian lynx fecal Metagenome"}]}, "richter ra": {"display": "Richter RA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA475137", "pmid": "33245689", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhizopus oryzae Genome sequencing and assembly"}]}, "richter sr": {"display": "Richter SR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12636", "pmid": "26818667", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of P. acnes levels in NGS data from cancer samples"}]}, "ricklefs i": {"display": "Ricklefs I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "ridaura vk": {"display": "Ridaura VK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA39859", "pmid": "20368178", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Analyses of the human gut microbiome after transplantation into germ-free mice"}]}, "riddle ms": {"display": "Riddle MS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945408", "pmid": "38085102", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prev…"}]}, "riechelmann rp": {"display": "Riechelmann RP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "riecken k": {"display": "Riecken K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "riedel sf": {"display": "Riedel SF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA647720", "pmid": "33727392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiome sequencing during a high fiber diet intervention"}]}, "riedler j": {"display": "Riedler J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15633", "pmid": "35406036", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}]}, "rieger am": {"display": "Rieger AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "rieger d": {"display": "Rieger D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41353", "pmid": "33997698", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Mass burial genomics reveals outbreak of enteric paratyphoid fever in the Late Medieval t…"}, {"acc": "PRJEB66169", "pmid": "41540446", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient DNA study provides clues to leprosy susceptibility in medieval Europe"}]}, "riemann r": {"display": "Riemann R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40662", "pmid": "34675897", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Deep (Meta)genomics and (Meta)transcriptome Analyses of Fungal and Bacteria Consortia Fro…"}]}, "rifkin rf": {"display": "Rifkin RF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA930765", "pmid": "36869137", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia felis reads and MAG recovered from a child who lived in southern Africa 2000 y…"}]}, "riga a": {"display": "Riga A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "rigaut-jalabert f": {"display": "Rigaut-Jalabert F", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "rigutto iml": {"display": "Rigutto IML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1215350", "pmid": "40600797", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "16S rRNA sequences of sediment incubations from a eutrophic marine lake"}]}, "rima b": {"display": "Rima B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29970463", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "rimal b": {"display": "Rimal B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "rind mm": {"display": "Rind MM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49648", "pmid": "39155318", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Neolithic Yersinia pestis infections in humans and a dog"}]}, "ring d": {"display": "Ring D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}]}, "rinke c": {"display": "Rinke C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA492716", "pmid": "31384000", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}]}, "rinne c": {"display": "Rinne C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}, {"acc": "PRJEB49648", "pmid": "39155318", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Neolithic Yersinia pestis infections in humans and a dog"}]}, "rios e": {"display": "Ríos E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1307628", "pmid": "41461922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbial oral-gut translocation in advanced chronic liver disease is linked to exacerbat…"}]}, "ris f": {"display": "Ris F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44214", "pmid": "34983654", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in the gut microbiome in colon cancer surgery patients: a pilot observational stu…"}]}, "ritter d": {"display": "Ritter D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA683873", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Severe acute respiratory syndrome coronavirus 2 Genome sequencing"}]}, "ritz j": {"display": "Ritz J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA787952", "pmid": "35239511", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}]}, "riva a": {"display": "Riva A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1168703", "pmid": "38485093", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of an epilepsy-linked gut microbiota signature in a pediatric rat model of…"}]}, "rivailler p": {"display": "Rivailler P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA681411", "pmid": "34230529", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Clinical sample from VZV patients"}]}, "riveiro-barciela m": {"display": "Riveiro-Barciela M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "rivera ge": {"display": "Rivera GE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1297429", "pmid": "40946313", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "16S and RNA sequencing Anopheles gambiae"}]}, "rivera ppl": {"display": "Rivera PPL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522699", "pmid": "31427729", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}]}, "rivera-gonzalez i": {"display": "Rivera-González I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "rivera-gutierrez x": {"display": "Rivera-Gutiérrez X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA592261", "pmid": "32788688", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "35196791", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "36650178", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}]}, "rizkalla s": {"display": "Rizkalla S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4413", "pmid": "23985875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary intervention impact on gut microbial gene richness based on SOLiD next generation…"}]}, "rizvi h": {"display": "Rizvi H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "rizzo sm": {"display": "Rizzo SM", "group": false, "n_studies": 68, "studies": [{"acc": "PRJDB4525", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics of fecal bacterial consortium inhabiting healthy Asian children"}, {"acc": "PRJEB12669", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB15257", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB1786", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB24006", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24771", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB29052", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB32135", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32631", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB39610", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB41102", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB41463", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB42363", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB42363", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB6456", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA215106", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA221723", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA268964", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA287207", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA300541", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA321218", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA322188", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA336518", "pmid": "36123315", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA339914", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA362284", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA379120", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA422434", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422569", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA436562", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA482729", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of native and acetylated high amylose maize starch on fecal pH, short chain fatty…"}, {"acc": "PRJNA486782", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486795", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Modification of gut microbiota-bile acid-intestinal FXR signaling leads to the clinical b…"}, {"acc": "PRJNA489090", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489693", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA489693", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA492716", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA497734", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA518912", "pmid": "36123315", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA521878", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA544527", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA547717", "pmid": "36123315", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "human oral metagenome Raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA555020", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA557731", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA562766", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA630999", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA633576", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA637878", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA644725", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA644725", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA648487", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA686821", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics data from human stool microorganism Raw sequence reads"}, {"acc": "PRJNA688164", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA695570", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA698986", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA730640", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA833139", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gender-specific cross-generational microbial persistence of human gut microbes"}, {"acc": "PRJNA845806", "pmid": "37191543", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Trial of Diet in Gestational Diabetes Mellitus: Metabolic Consequences to Mother and Offs…"}, {"acc": "PRJNA991269", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "roager hm": {"display": "Roager HM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB84944", "pmid": "40885737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of 56 mother-infant dyads from the ALADDIN birth cohort"}]}, "roba kt": {"display": "Roba KT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "33553097", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "robaczewska a": {"display": "Robaczewska A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA288562", "pmid": "26283357", "pos": null, "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}]}, "robbins a": {"display": "Robbins A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542703", "pmid": "35310842", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}]}, "robbins es": {"display": "Robbins ES", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1280936", "pmid": "41405404", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome of Infants in the Neonatal Intensive Care Unit"}, {"acc": "PRJNA417283", "pmid": "41405404", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA988496", "pmid": "41405404", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}]}, "robert c": {"display": "Robert C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}, {"acc": "PRJNA438436", "pmid": "31270376", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The gut microbiota influence the basal physiological parameters in equine athletes"}, {"acc": "PRJNA438436", "pmid": "33898524", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The gut microbiota influence the basal physiological parameters in equine athletes"}]}, "robert l": {"display": "Robert L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "roberti mp": {"display": "Roberti MP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "roberts ap": {"display": "Roberts AP", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1211045", "pmid": "40833797", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Freshwater snail faeces raw sequence reads"}, {"acc": "PRJNA1273078", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Noma oral microbiome raw sequence reads"}]}, "roberts b": {"display": "Roberts B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "roberts g": {"display": "Roberts G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1080233", "pmid": "39214237", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Breathing Together severe wheeze and asthma cohort"}]}, "roberts mc": {"display": "Roberts MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29668933", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "roberts p": {"display": "Roberts P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "robertson ce": {"display": "Robertson CE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884688", "pmid": "36778973", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiota and protein source"}]}, "robertson rc": {"display": "Robertson RC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB51728", "pmid": "39341154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "robinson b": {"display": "Robinson B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629517", "pmid": "34145447", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "DFO - beads in situ microcosms Raw sequence reads"}]}, "robinson da": {"display": "Robinson DA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748448", "pmid": "34523979", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic WGS of Preterm Infant Skin and Stool"}]}, "robinson jl": {"display": "Robinson JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177009", "pmid": "40738103", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A human milk oligosaccharide alters the microbiome, circulating hormones, cytokines and m…"}]}, "robinson k": {"display": "Robinson K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA977671", "pmid": "38320392", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Microbiome analysis of cold related stress in poultry"}]}, "robinson sd": {"display": "Robinson SD", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "robles garcia n": {"display": "Robles García N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA205039", "pmid": "24568097", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Teposcolula Yucundaa, Oaxaca, Mexico Metagenome"}]}, "robles-sikisaka r": {"display": "Robles-Sikisaka R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "robson j": {"display": "Robson J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "roca j": {"display": "Roca J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA851554", "pmid": "34938418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomes of the gut microbiota of CD patients that required resection from a Belgian c…"}]}, "rocha epc": {"display": "Rocha EPC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "rocha er": {"display": "Rocha ER", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "rocha m": {"display": "Rocha M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "rocha r": {"display": "Rocha R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "rocha s": {"display": "Rocha S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB17694", "pmid": "27912057", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Di…"}]}, "roche am": {"display": "Roche AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA451186", "pmid": "30376898", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Placenta Microbiome"}]}, "roche ke": {"display": "Roche KE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB29065", "pmid": "37158607", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Daily sampling reveals personalized diet-microbiome associations"}, {"acc": "PRJNA290380", "pmid": "37158607", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "rock mj": {"display": "Rock MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1015704", "pmid": "40042126", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal and oropharyngeal microbiota from infants with cystic fibrosis on and off beta-lact…"}]}, "rockett r": {"display": "Rockett R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA595393", "pmid": "32108565", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Optimisation of sample preparation for culture-independent sequencing of Bordetella pertu…"}, {"acc": "PRJNA633948", "pmid": "35263515", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "rockett rj": {"display": "Rockett RJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "rodella g": {"display": "Rodella G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746509", "pmid": "34946200", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota in an infant with propionic acidemia before and after probiotic supplement…"}]}, "rodger a": {"display": "Rodger A", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "31534227", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA400115", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}, {"acc": "PRJNA806984", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}, {"acc": "PRJNA994433", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Variability of Bifidobacterium Species in the Infant Gut is Independent of M…"}]}, "rodgers ma": {"display": "Rodgers MA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1188190", "pmid": "37113001", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two…"}, {"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "rodgers t": {"display": "Rodgers T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "rodionov da": {"display": "Rodionov DA", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB11419", "pmid": "36032669", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB6456", "pmid": "35768643", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}, {"acc": "PRJNA398089", "pmid": "36032669", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA400115", "pmid": "36032669", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}]}, "rodrigues gj": {"display": "Rodrigues GJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB29237", "pmid": "35967843", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}, {"acc": "PRJEB41463", "pmid": "35967843", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}]}, "rodrigues rr": {"display": "Rodrigues RR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "rodriguez jm": {"display": "Rodriguez JM", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB32631", "pmid": "32431894", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA288562", "pmid": "32431894", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}, {"acc": "PRJNA593263", "pmid": "32431894", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Feces metagenome"}]}, "rodriguez m": {"display": "Rodriguez M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "rodriguez s": {"display": "Rodriguez S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}]}, "rodriguez-ceja m": {"display": "Rodríguez-Ceja M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "rodriguez-garcia p": {"display": "Rodríguez-García P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62690", "pmid": "37513505", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, 5-HMO supplemented formula vs. control formula vs. breastfed"}]}, "rodriguez-gutierrez na": {"display": "Rodríguez-Gutierrez NA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1260751", "pmid": "41536238", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal Obesity Alters Human Milk Oligosaccharides Content and Promotes Early Acquisitio…"}]}, "rodriguez-mueller b": {"display": "Rodriguez-Mueller B", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB5224", "pmid": "27803195", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA268964", "pmid": "27803195", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA271618", "pmid": "27803195", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Baboon feces Metagenome"}, {"acc": "PRJNA278393", "pmid": "27803195", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA422434", "pmid": "27803195", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA48479", "pmid": "27803195", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "rodriguez-nava g": {"display": "Rodriguez-Nava G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1236482", "pmid": "42020750", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Short-term clinical evolution of Enterococcus faecium"}]}, "rodriguez-palacios a": {"display": "Rodriguez-Palacios A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078280", "pmid": "38405928", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Quantifying forms and functions of intestinal bile acid pools in mice"}]}, "rodriguez-r lm": {"display": "Rodriguez-R LM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA486009", "pmid": "33452027", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Genome diversity of pathogenic Escherichia coli in Ecuador"}, {"acc": "PRJNA747761", "pmid": "37938667", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Atlanta, USA and Maputo, Mozambique Children gut microbiome Metagenome"}]}, "rodriguez-rubio l": {"display": "Rodríguez-Rubio L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA590575", "pmid": "32317653", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Bacteriophages in human samples"}]}, "rodriguez-sinovas a": {"display": "Rodriguez-Sinovas A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1171764", "pmid": "40524271", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut metagenome of IBD patients and healthy controls"}]}, "rodriguez-varela r": {"display": "Rodriguez-Varela R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9783", "pmid": "26351665", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing Chalcolithic human remains from El Portalón, Spain"}]}, "roe ba": {"display": "Roe BA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA32089", "pmid": "19043404", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}]}, "roehe r": {"display": "Roehe R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21624", "pmid": "29491419", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of the rumen of Scottish cattle."}]}, "roelofs d": {"display": "Roelofs D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473421", "pmid": "31086216", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Folsomia candida gut metagenome sequence reads"}]}, "roemer c": {"display": "Roemer C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "roesch lfw": {"display": "Roesch LFW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1095378", "pmid": "39373498", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic resistance"}]}, "roeselers g": {"display": "Roeselers G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "roesemann s": {"display": "Roesemann S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}]}, "rogelj i": {"display": "Rogelj I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA203137", "pmid": "25059871", "pos": "last", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Lactobacillus paragasseri K7 strain:K7 Genome sequencing and assembly"}]}, "roger l": {"display": "Roger L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48663", "pmid": "35311446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Increasing the diversity of dietary fibres in a daily-consumed bread modifies gut microbi…"}]}, "rogers ce": {"display": "Rogers CE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA911205", "pmid": "37726348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Psychosocial adversity experienced in utero and early life is associated with variation i…"}]}, "rogers gb": {"display": "Rogers GB", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA503909", "pmid": "33074097", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "rogers m": {"display": "Rogers M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}]}, "rogers sl": {"display": "Rogers SL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27932649", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "rogers zn": {"display": "Rogers ZN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "rogova m": {"display": "Rogova M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}]}, "rohde h": {"display": "Rohde H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1775", "pmid": "23571589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diagnostic Metagenomics: A Culture-Independent Approach to the Investigation of Bacterial…"}]}, "rohmer l": {"display": "Rohmer L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA314903", "pmid": "24178246", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Pseudomonas Aeruginosa Early CF Adaptive Changes"}]}, "rohrbach r": {"display": "Rohrbach R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "rohrlach ab": {"display": "Rohrlach AB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "rohwer f": {"display": "Rohwer F", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB9818", "pmid": "26351661", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The gut DNA viromes of Malawian twins discordant for severe acute undernutrition"}, {"acc": "PRJNA16209", "pmid": "16336043", "pos": null, "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of RNA viruses in human feces"}, {"acc": "PRJNA80601", "pmid": "23554892", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterization of the nasopharyngeal virome in patients with influenza-like illness of…"}]}, "rojas dp": {"display": "Rojas DP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "rojas-salvatierra l": {"display": "Rojas-Salvatierra L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1138246", "pmid": "40755247", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal metagenomes of Peruvian children"}]}, "rojas-tirado p": {"display": "Rojas-Tirado P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1233203", "pmid": null, "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Microbiome of recirculating aquaculture systems under different particle loads (MikroRAS)"}]}, "rojas-velazquez d": {"display": "Rojas-Velazquez D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542703", "pmid": "42131447", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}]}, "rojas-velazquez l": {"display": "Rojas-Velázquez L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1258733", "pmid": "42127418", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Metagenome"}, {"acc": "PRJNA592261", "pmid": "32788688", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "35196791", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "36650178", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}]}, "rojo d": {"display": "Rojo D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB3085", "pmid": "23236009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}]}, "rolfe sa": {"display": "Rolfe SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB19676", "pmid": "26512868", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of microbes attached to fuel cell electrodes"}]}, "roll s": {"display": "Roll S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "romac s": {"display": "Romac S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "romaina cachique l": {"display": "Romaina Cachique L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912682", "pmid": "38272215", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "39727415", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}]}, "romani l": {"display": "Romani L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1036590", "pmid": "38318164", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "The Pediatric Gut Microbiome and Virome"}]}, "romanitsa a": {"display": "Romanitsa A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA604466", "pmid": "32939372", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota of adolescens with obesity"}]}, "romano me": {"display": "Romano ME", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "36777525", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "romanowicz m": {"display": "Romanowicz M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821920", "pmid": "41782637", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mental Health Screening for Babies. What can we learn from infant and caregiver behaviors…"}]}, "romantsov t": {"display": "Romantsov T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202388", "pmid": "25028422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "romero gonzalez b": {"display": "Romero González B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB104199", "pmid": "42531397", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "The genomic identity of early smallpox in South America"}]}, "romero k": {"display": "Romero K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "romero pe": {"display": "Romero PE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA802048", "pmid": "37882571", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Insights into the infant gut microbiome composition after bovine lactoferrin oral adminis…"}]}, "romero-soto hn": {"display": "Romero-Soto HN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA988496", "pmid": "40823537", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}]}, "romero-tapiador s": {"display": "Romero-Tapiador S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "romeyer-dherbey jh": {"display": "Romeyer-Dherbey JH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB66169", "pmid": "41540446", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient DNA study provides clues to leprosy susceptibility in medieval Europe"}]}, "romijn ha": {"display": "Romijn HA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "romme fo": {"display": "Romme FO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}]}, "romo h": {"display": "Romo H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1261853", "pmid": "38816345", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia sp. CA6269 genome sequencing from clinical and environmental samples"}]}, "ron r": {"display": "Ron R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "rondinaud e": {"display": "Rondinaud E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35816", "pmid": "32585945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota of carriers of extended-spectrum beta-lactamase or carbapenemase-producing…"}]}, "rondinella d": {"display": "Rondinella D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA300541", "pmid": "42312244", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "rondon g": {"display": "Rondon G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "rong n": {"display": "Rong N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA776087", "pmid": "36973820", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}]}, "ronzoni n": {"display": "Ronzoni N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB121228", "pmid": "38793608", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}, {"acc": "PRJEB121228", "pmid": "41683794", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}]}, "roosens nhc": {"display": "Roosens NHC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA954551", "pmid": "37537550", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Nanopore sequencing of HMW-DNA to compare DNA extraction methods for metagenomics"}]}, "roosens nhcj": {"display": "Roosens NHCJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "38659981", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "rosa ba": {"display": "Rosa BA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA911205", "pmid": "37726348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Psychosocial adversity experienced in utero and early life is associated with variation i…"}]}, "rosa lh": {"display": "Rosa LH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29861", "pmid": "31550653", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "UNVEILING RESISTOME PROFILES IN THE SEDIMENTS OF AN ANTARCTIC VOLCANIC ISLAND"}]}, "rosa ps": {"display": "Rosa PS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "rosado as": {"display": "Rosado AS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA649484", "pmid": "34389536", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "rosado jg": {"display": "Rosado JG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA649484", "pmid": "34389536", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "rosado pm": {"display": "Rosado PM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA649484", "pmid": "34389536", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "rosales rosas al": {"display": "Rosales Rosas AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA705894", "pmid": "33883261", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenomics of Belgian mosquitoes"}]}, "rosario matos n": {"display": "Rosario Matos N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA938144", "pmid": "37754563", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HOLA gut microbiome"}]}, "rosas-salazar c": {"display": "Rosas-Salazar C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "38782975", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB46659", "pmid": "41265504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "rose dr": {"display": "Rose DR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202388", "pmid": "22180823", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}, {"acc": "PRJNA202388", "pmid": "25028422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "rose g": {"display": "Rose G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15257", "pmid": "28149696", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB15257", "pmid": "34362295", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}]}, "rosen mj": {"display": "Rosen MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "rosenberg jb": {"display": "Rosenberg JB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA916259", "pmid": "40140473", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}]}, "rosenboom i": {"display": "Rosenboom I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52640", "pmid": "37474785", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Longitudinal development of the airway metagenome of preterm very low birth weight infant…"}]}, "rosengren a": {"display": "Rosengren A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "rosenke k": {"display": "Rosenke K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "rosenthal a": {"display": "Rosenthal A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "21779173", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "rosh j": {"display": "Rosh J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}]}, "roskes ls": {"display": "Roskes LS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA774819", "pmid": "35695455", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Highly specialized carbohydrate metabolism capability in Bifidobacterium strain associate…"}]}, "ross bd": {"display": "Ross BD", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA296814", "pmid": "34215179", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "35568730", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA955235", "pmid": "39945545", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}]}, "ross mc": {"display": "Ross MC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1084251", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tryptophan metabolites in fecal samples from healthy humans"}, {"acc": "PRJNA1195142", "pmid": "39282326", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}]}, "ross mi": {"display": "Ross MI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "ross pr": {"display": "Ross PR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA385126", "pmid": "29761040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA48479", "pmid": "29761040", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "ross rp": {"display": "Ross RP", "group": false, "n_studies": 12, "studies": [{"acc": "PRJEB32631", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}, {"acc": "PRJNA322188", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA339914", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA446038", "pmid": "30526683", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}, {"acc": "PRJNA475246", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA678472", "pmid": "34407825", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Long-term persistence of crAss-like phage crAss001 in Bacteroides intestinalis cultures i…"}, {"acc": "PRJNA971895", "pmid": "38310316", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Resismet"}]}, "ross se": {"display": "Ross SE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1015704", "pmid": "40042126", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal and oropharyngeal microbiota from infants with cystic fibrosis on and off beta-lact…"}]}, "rossel c": {"display": "Rossel C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB89491", "pmid": "42057198", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LucKi Gut - Longitudinal metagenomic sequencing of infant gut microbiota"}]}, "rossen jwa": {"display": "Rossen JWA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB23207", "pmid": "29468143", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic characterization of the human intestinal microbiota in faecal samples from ST…"}]}, "rossen ng": {"display": "Rossen NG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46777", "pmid": "25836986", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Ulcerative Colitis."}]}, "rossi e": {"display": "Rossi E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA643802", "pmid": "32859933", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "FMT for diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal…"}]}, "rossi l": {"display": "Rossi L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA674643", "pmid": "35474894", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Validation of Coronavirus and Sepsis Probe Sets designed using HUBDesign"}]}, "rossi m": {"display": "Rossi M", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1019702", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1198101", "pmid": "41274878", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic re-sequencing of human milk"}, {"acc": "PRJNA504891", "pmid": "38047279", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "42039832", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "42039832", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "rossi p": {"display": "Rossi P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1013917", "pmid": "37965266", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Gut microbiota of an immunocompromised child with chronic cryptosporidiosis"}]}, "rossini v": {"display": "Rossini V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352475", "pmid": "36420990", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "rossouw c": {"display": "Rossouw C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "rossow s": {"display": "Rossow S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "26966223", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "roszik j": {"display": "Roszik J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "rota pa": {"display": "Rota PA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28818890", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "rota stabelli o": {"display": "Rota Stabelli O", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}]}, "rota-stabelli o": {"display": "Rota-Stabelli O", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "roth de": {"display": "Roth DE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "roth-schulze aj": {"display": "Roth-Schulze AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}]}, "rothschild d": {"display": "Rothschild D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "rotta l": {"display": "Rotta L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA615842", "pmid": "33494335", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}]}, "rouault c": {"display": "Rouault C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "roubinian n": {"display": "Roubinian N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "20976137", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "rouggly-nickless c": {"display": "Rouggly-Nickless C", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA301903", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA701982", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic-driven intestinal dysbiosis in paediatric SBS alters microbiome functions and…"}]}, "rouillard jm": {"display": "Rouillard JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA348754", "pmid": "27939314", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}]}, "roume h": {"display": "Roume H", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB43454", "pmid": "35151268", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Long-term diosmectite use does not alter the gut microbiota in adults with chronic diarrh…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB48663", "pmid": "35311446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Increasing the diversity of dietary fibres in a daily-consumed bread modifies gut microbi…"}, {"acc": "PRJEB50473", "pmid": "35532226", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "PacBio HiFi sequencing of a human fecal metagenome"}, {"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}, {"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "28721231", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "rouse n": {"display": "Rouse N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1198110", "pmid": "40439559", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Clinical infection by Francisella tularensis ssp. holarctica in stranded beluga whales fr…"}]}, "routy b": {"display": "Routy B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "roux l": {"display": "Roux L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1040852", "pmid": "37350224", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CHAN skin Metagenome"}]}, "rovinsky r": {"display": "Rovinsky R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698986", "pmid": "37973815", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}]}, "rowan c": {"display": "Rowan C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA986135", "pmid": "37469596", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "UTI microbiome"}, {"acc": "PRJNA995059", "pmid": "36825940", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Respiratory Microbiome"}]}, "rowe sm": {"display": "Rowe SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177516", "pmid": "40483244", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Changes in Fecal Microbiota in Adults with Cystic Fibrosis with 6 Months of CFTR Modulato…"}]}, "rowe w": {"display": "Rowe W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4647", "pmid": "26197475", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Search Engine for Antimicrobial Resistance: a cloud compatible pipeline and web interface…"}]}, "rowe wpm": {"display": "Rowe WPM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12083", "pmid": "28175320", "pos": "first", "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Metagenomes"}]}, "rowland s": {"display": "Rowland S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA695570", "pmid": "34335499", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "34444993", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "roy a": {"display": "Roy A", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA356809", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "the gut metagenome of ginat pandas , bears and carnivores Raw sequence reads"}, {"acc": "PRJNA358755", "pmid": "35568757", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "wild and captive gut Raw sequence reads"}, {"acc": "PRJNA774076", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Gut metagenome of bamboo rats"}]}, "roy ph": {"display": "Roy PH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "roy pk": {"display": "Roy PK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39367018", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "roychoudhury p": {"display": "Roychoudhury P", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}, {"acc": "PRJNA338014", "pmid": "28711653", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29281620", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29554870", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29898986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30383234", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "royer g": {"display": "Royer G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45090", "pmid": "39665373", "pos": null, "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "ED Gut"}]}, "rozati s": {"display": "Rozati S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA642893", "pmid": "33212154", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin microbiome from cutaneous T-cell lymphoma patients and healthy volunteers"}]}, "rozday t": {"display": "Rozday T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "rozman v": {"display": "Rozman V", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA339914", "pmid": "36170451", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA343144", "pmid": "36170451", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome Metagenomic assembly"}, {"acc": "PRJNA400259", "pmid": "36170451", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human Milk Microbiome Metagenome"}, {"acc": "PRJNA524170", "pmid": "36170451", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Resistant microbiome underlies antibiotic therapy in pouchitis"}]}, "ruan y": {"display": "Ruan Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA16209", "pmid": "16336043", "pos": "last", "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of RNA viruses in human feces"}]}, "ruas-madiedo p": {"display": "Ruas-Madiedo P", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "ruaud a": {"display": "Ruaud A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27308", "pmid": "30974084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome metagenome analysis of stool samples from individuals with low and high saliva…"}]}, "rubbia-brandt l": {"display": "Rubbia-Brandt L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB20595", "pmid": "30065706", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hepatic brucelloma studied by next generation sequencing"}]}, "ruberg sa": {"display": "Ruberg SA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA679730", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2018"}, {"acc": "PRJNA702522", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2019"}]}, "rubin be": {"display": "Rubin BE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698986", "pmid": "37973815", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}]}, "rubin dc": {"display": "Rubin DC", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA301903", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA701982", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic-driven intestinal dysbiosis in paediatric SBS alters microbiome functions and…"}]}, "rubin dt": {"display": "Rubin DT", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}, {"acc": "PRJNA701961", "pmid": "37069665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA701961", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "rubin em": {"display": "Rubin EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "rubin-blum m": {"display": "Rubin-Blum M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA515489", "pmid": "33537022", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genomic collection of symbionts associated with Petrosia ficiformis"}]}, "rubino f": {"display": "Rubino F", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB8939", "pmid": "28085156", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of Rumen microbiomes reveals the functional isoforms driving microbi…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "rubino h": {"display": "Rubino H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27932649", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "rubinstein mh": {"display": "Rubinstein MH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB18726", "pmid": "12345", "pos": "first", "reason_code": "site_unknown", "src": "B", "status": "excluded", "title_short": "GD_MGS_title"}]}, "rubio-cisneros ii": {"display": "Rubio-Cisneros II", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "rubiola s": {"display": "Rubiola S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA638876", "pmid": "32983010", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of milk and in-line milk filter"}]}, "ruchirawat m": {"display": "Ruchirawat M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "rudd d": {"display": "Rudd D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA751712", "pmid": "35345612", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "To Probiotic or not to probiotic: using metagenomics to compare the gut microbiome of inf…"}, {"acc": "PRJNA751712", "pmid": "35796792", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "To Probiotic or not to probiotic: using metagenomics to compare the gut microbiome of inf…"}]}, "rudd pm": {"display": "Rudd PM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "37230981", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJEB48251", "pmid": "39365058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "rudi k": {"display": "Rudi K", "group": false, "n_studies": 38, "studies": [{"acc": "PRJDB4176", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1220", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB19090", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}, {"acc": "PRJEB21528", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB27005", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB29052", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB32135", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB5224", "pmid": "37259063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJEB6456", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB7774", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB9576", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA268964", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA278393", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA287207", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA289586", "pmid": "37259063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA294605", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA299502", "pmid": "37259063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA324672", "pmid": "37259063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA339914", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA375935", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut Metagenome"}, {"acc": "PRJNA380031", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}, {"acc": "PRJNA380118", "pmid": "37259063", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA392180", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "37259063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA397112", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA397219", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA401385", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA422434", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA431482", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA438847", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA449784", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA472785", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Gut Microbiome Metagenomic Sequencing"}, {"acc": "PRJNA473126", "pmid": "37259063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA487636", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "An increased abundance of Clostridiaceae characterizes arthritis in inflammatory bowel di…"}, {"acc": "PRJNA492714", "pmid": "37259063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Impact of High altitude environment of Human oral and gut microbiota"}, {"acc": "PRJNA496479", "pmid": "37259063", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "rudolf i": {"display": "Rudolf I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38221", "pmid": "33319812", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Airway metagenome of healthy infants and infants with cystic fibrosis"}]}, "rudolf s": {"display": "Rudolf S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "rudolph mc": {"display": "Rudolph MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019702", "pmid": "39043677", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA1019702", "pmid": "39265573", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}]}, "rudrik jt": {"display": "Rudrik JT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA660443", "pmid": "34785751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the human gut during enteric infection"}]}, "ruf i": {"display": "Ruf I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA947377", "pmid": "38366600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Establishment of a non-Westernized gut microbiota in men who have sex with men is associa…"}]}, "ruff rd": {"display": "Ruff RD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA955235", "pmid": "42262087", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}]}, "ruggiero nm": {"display": "Ruggiero NM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}]}, "ruhli fj": {"display": "Rühli FJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA205039", "pmid": "24568097", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Teposcolula Yucundaa, Oaxaca, Mexico Metagenome"}]}, "ruisi m": {"display": "Ruisi M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1121316", "pmid": "37060545", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}]}, "ruiz a": {"display": "Ruiz A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "ruiz jf": {"display": "Ruiz JF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}]}, "ruiz l": {"display": "Ruiz L", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA473126", "pmid": "34064844", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA698773", "pmid": "33973321", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA698773", "pmid": "34715437", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "ruiz p": {"display": "Ruiz P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA646650", "pmid": "33658330", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "In vivo competitions between Fibrobacter succinogenes, Ruminococcus flavefaciens and Rumi…"}]}, "ruiz-blas f": {"display": "Ruiz-Blas F", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB66721", "pmid": "39384533", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metabolic features explaining the prevalence Bathyarchaeia among microbial communities in…"}, {"acc": "PRJEB98232", "pmid": "41459228", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Cryptic sulfur cycling sustains lithotrophy in the deep biosphere of ferruginous Lake Tow…"}]}, "ruiz-cobo jc": {"display": "Ruiz-Cobo JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "ruiz-miranda cr": {"display": "Ruiz-Miranda CR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA847605", "pmid": "36565815", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosa…"}]}, "ruiz-ruiz s": {"display": "Ruiz-Ruiz S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB39661", "pmid": "41513932", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}, {"acc": "PRJEB62571", "pmid": "41513932", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Changes in the microbiota across life: the existence of a core of microbial taxa and deco…"}]}, "rulof a": {"display": "Rulof A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87602", "pmid": "37243505", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteria in colitis associated cancer development"}]}, "run jq": {"display": "Run JQ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA16209", "pmid": "16336043", "pos": null, "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of RNA viruses in human feces"}]}, "runa j": {"display": "Runa J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019500", "pmid": "39054413", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}]}, "runde jm": {"display": "Runde JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701961", "pmid": "37069665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA701961", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "rundle ag": {"display": "Rundle AG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52295", "pmid": "38117587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Precocious infant gut microbiome reprograms enterocytes and promotes childhood obesity ri…"}]}, "ruohtula t": {"display": "Ruohtula T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA475246", "pmid": "35685890", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "rupp j": {"display": "Rupp J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA907865", "pmid": "37486790", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhinovirus raw sequence reads"}]}, "ruppe e": {"display": "Ruppé E", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB20595", "pmid": "30065706", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hepatic brucelloma studied by next generation sequencing"}, {"acc": "PRJEB20877", "pmid": "28930150", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Detection of bacterial pathogens from broncho-alveolar lavage by next-generation sequenci…"}, {"acc": "PRJEB24843", "pmid": "30714464", "pos": "last", "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "The intestinal microbiota predisposes to traveller’s diarrhoea and to the carriage of mul…"}, {"acc": "PRJEB27799", "pmid": "30478291", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}, {"acc": "PRJEB47877", "pmid": "37938717", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Challenges in bacterial DNA enrichment and quantification in tissues"}, {"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}, {"acc": "PRJNA1262354", "pmid": "41603547", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMBARK - Establishing a Monitoring Baseline for Antimicrobial Resistance in Key environme…"}]}, "ruscheweyh hj": {"display": "Ruscheweyh HJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}]}, "rushton l": {"display": "Rushton L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1235110", "pmid": "39798461", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome"}]}, "russel j": {"display": "Russel J", "group": false, "n_studies": 37, "studies": [{"acc": "PRJEB15257", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB32631", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB39223", "pmid": "39138199", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB46943", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB6456", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA231909", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA272371", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA301903", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA436562", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA524703", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA549787", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA557731", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA698986", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA715601", "pmid": "38135681", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "38730321", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA716780", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA916259", "pmid": "38135681", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}, {"acc": "PRJNA916952", "pmid": "39138199", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Stanford's Outcomes Research in Kids (STORK) Virome"}]}, "russell jm": {"display": "Russell JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB98232", "pmid": "41459228", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Cryptic sulfur cycling sustains lithotrophy in the deep biosphere of ferruginous Lake Tow…"}]}, "russell jn": {"display": "Russell JN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1279254", "pmid": "41562608", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of synovial joint fluid collected from feedlot cattle. Raw sequenc…"}]}, "russell rm": {"display": "Russell RM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28287142", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30383234", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "russell sk": {"display": "Russell SK", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB8347", "pmid": "42259839", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJNA1148144", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Biosignatures of late-onset extraintestinal bacterial infections"}, {"acc": "PRJNA301903", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA48479", "pmid": "42259839", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA489090", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA799247", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA884103", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}]}, "russo a": {"display": "Russo A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1013917", "pmid": "37965266", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Gut microbiota of an immunocompromised child with chronic cryptosporidiosis"}]}, "rutherford e": {"display": "Rutherford E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "37938270", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "rutherford em": {"display": "Rutherford EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "36220843", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "rutt l": {"display": "Rutt L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA208535", "pmid": "40607829", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The daily dynamics of the vaginal microbiota before and after bacterial vaginosis"}, {"acc": "PRJNA774819", "pmid": "35695455", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Highly specialized carbohydrate metabolism capability in Bifidobacterium strain associate…"}]}, "ruzzini a": {"display": "Ruzzini A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1279254", "pmid": "41562608", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of synovial joint fluid collected from feedlot cattle. Raw sequenc…"}]}, "ryan ca": {"display": "Ryan CA", "group": false, "n_studies": 11, "studies": [{"acc": "PRJEB32631", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA322188", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA339914", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA385126", "pmid": "29761040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA475246", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA48479", "pmid": "29761040", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA971895", "pmid": "38310316", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Resismet"}]}, "ryan fj": {"display": "Ryan FJ", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA385126", "pmid": "29761040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA446038", "pmid": "30526683", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}, {"acc": "PRJNA48479", "pmid": "29761040", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA807448", "pmid": "40175554", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "ryan jj": {"display": "Ryan JJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB12083", "pmid": "28175320", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Metagenomes"}, {"acc": "PRJEB4647", "pmid": "26197475", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Search Engine for Antimicrobial Resistance: a cloud compatible pipeline and web interface…"}]}, "ryan s": {"display": "Ryan S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1295573", "pmid": "41760690", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The intestinal microbiome of patients with newly diagnosed invasive breast cancer and duc…"}]}, "rychkova l": {"display": "Rychkova L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA604466", "pmid": "32939372", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota of adolescens with obesity"}]}, "rydzewska g": {"display": "Rydzewska G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "ryffel b": {"display": "Ryffel B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "rymenans l": {"display": "Rymenans L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA693793", "pmid": "35320047", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BaBel Infant Gut Virome Raw Data"}]}, "ryter s": {"display": "Ryter S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "rzeznik-orignac j": {"display": "Rzeznik-Orignac J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "sa ai": {"display": "Sá AI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "saad bt": {"display": "Saad BT", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA771993", "pmid": "34827320", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Antimicrobial Discovery from Alcaligenes faecalis A Metagenomics-Nanopore sequencing Appr…"}, {"acc": "PRJNA785410", "pmid": "35052889", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Antimicrobial Discovery from Paenibacillus ehimensis A Metagenomics-Nanopore sequencing A…"}]}, "saad mja": {"display": "Saad MJA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA894691", "pmid": "37082122", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Maternal exposure to air pollution changes gut microbiota in mice"}]}, "saag l": {"display": "Saag L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "sabag-daigle a": {"display": "Sabag-Daigle A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177009", "pmid": "40738103", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A human milk oligosaccharide alters the microbiome, circulating hormones, cytokines and m…"}]}, "sabater c": {"display": "Sabater C", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA473126", "pmid": "34064844", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "sabbioni s": {"display": "Sabbioni S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976261", "pmid": "31153098", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole metagenomic shotgun sequencing of the subgingival microbiome of diabetics and non-d…"}, {"acc": "PRJNA976261", "pmid": "37257865", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole metagenomic shotgun sequencing of the subgingival microbiome of diabetics and non-d…"}]}, "sabeti pc": {"display": "Sabeti PC", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": "last", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}, {"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}, {"acc": "PRJNA623215", "pmid": "32349121", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing to evaluate massively multiplexed detection with Cas13"}]}, "sabin s": {"display": "Sabin S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37508", "pmid": "32528126", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "A treponemal genome from an historic plague victim supports recent emergence of yaws and…"}, {"acc": "PRJNA445215", "pmid": "29959351", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "sabina b": {"display": "Sabina B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "sabino k": {"display": "Sabino K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "36220843", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": "37938270", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "sabirova d": {"display": "Sabirova D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1366497", "pmid": "42553090", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Bifidobacterium- and Escherichia-dominated gut microbiome metabolic shifts in tuberculosi…"}]}, "sablin m": {"display": "Sablin M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "sabotta cm": {"display": "Sabotta CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA734860", "pmid": "35477306", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}]}, "sachdeva r": {"display": "Sachdeva R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB21259", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}, {"acc": "PRJNA914281", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Tandem repeats in giant archaeal Borg elements undergo rapid evolution and create new int…"}]}, "sacoor c": {"display": "Sacoor C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "sadik ea": {"display": "Sadik EA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "33829128", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "sadowsky mj": {"display": "Sadowsky MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA903921", "pmid": "40469735", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Mycobiome Maturation and Its Determinants during Infancy: A Comparison of Shotgun Met…"}]}, "sadzewicz l": {"display": "Sadzewicz L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA774819", "pmid": "35695455", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Highly specialized carbohydrate metabolism capability in Bifidobacterium strain associate…"}]}, "saeki t": {"display": "Saeki T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA692334", "pmid": "34641955", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Recovery of high-quality assembled genomes via single-cell genome-guided binning of metag…"}]}, "saffery r": {"display": "Saffery R", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA383868", "pmid": "28910633", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "30482830", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "32409670", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "saglani s": {"display": "Saglani S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1080233", "pmid": "39214237", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Breathing Together severe wheeze and asthma cohort"}]}, "saha pk": {"display": "Saha PK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1279970", "pmid": "42108276", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Carbon dioxide utilizing microaerophilic and anaerobic chemolithoautotrophic enrichments…"}]}, "saha-shah a": {"display": "Saha-Shah A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "saheb kashaf s": {"display": "Saheb Kashaf S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46333", "pmid": "37054678", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "sahin e": {"display": "Sahin E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1168703", "pmid": "38485093", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of an epilepsy-linked gut microbiota signature in a pediatric rat model of…"}]}, "sahin g": {"display": "Şahin G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1375659", "pmid": "42003651", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Antibiotic resistance gene profile in pigeon fecal microbiomes by shotgun metagenomics"}]}, "sahl jw": {"display": "Sahl JW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA348754", "pmid": "27939314", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}]}, "sahni lc": {"display": "Sahni LC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}, {"acc": "PRJNA1195144", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "sahoo rk": {"display": "Sahoo RK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1020650", "pmid": "36676144", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Apical Periodontal sample Metagenomes"}]}, "sahu sk": {"display": "Sahu SK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA776087", "pmid": "36973820", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}]}, "saiful alam bhuiyan m": {"display": "Saiful Alam Bhuiyan M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39143045", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "saini ny": {"display": "Saini NY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "sainz t": {"display": "Sainz T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB5185", "pmid": "25407519", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysfunctional gut microbiota drives chronic immune activation in HIV-treated individuals"}]}, "saisto t": {"display": "Saisto T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64567", "pmid": "33007265", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Maternal FMT in Cesarean-Born Infants - WGS sequencing of infants (1w to 1year) and mater…"}]}, "saito a": {"display": "Saito A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11203", "pmid": "34069916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Taxonomic and gene category analysis of subgingival plaques with and without periodontal…"}]}, "saito cpb": {"display": "Saito CPB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA717815", "pmid": "35758687", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human salivary metagenome in health and disease"}, {"acc": "PRJNA717815", "pmid": "38376220", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human salivary metagenome in health and disease"}]}, "saito d": {"display": "Saito D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA717815", "pmid": "35758687", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human salivary metagenome in health and disease"}, {"acc": "PRJNA717815", "pmid": "38376220", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human salivary metagenome in health and disease"}]}, "saito y": {"display": "Saito Y", "group": false, "n_studies": 11, "studies": [{"acc": "PRJDB4176", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB17632", "pmid": "37188713", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Subspecies in the global human gut microbiome"}, {"acc": "PRJEB6070", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6456", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB7774", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJNA217052", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Fiji COMP"}, {"acc": "PRJNA268964", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA290380", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA485056", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}]}, "sajantila a": {"display": "Sajantila A", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}, {"acc": "PRJNA348754", "pmid": "27939314", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}, {"acc": "PRJNA924035", "pmid": "36951096", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Unmasking the Tissue-Resident Eukaryotic DNA virome in Humans"}]}, "sakanaka m": {"display": "Sakanaka M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6456", "pmid": "35768643", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "sakwinska o": {"display": "Sakwinska O", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB42539", "pmid": "34756056", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "FUT2/FUT3 genes sequences and nasopharyngeal shotgun metagenomics from the Microbiota and…"}, {"acc": "PRJNA707065", "pmid": "35075183", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "NiPPeR Study - pilot microbiome investigation"}, {"acc": "PRJNA806984", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}]}, "salamat sm": {"display": "Salamat SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}]}, "salas la": {"display": "Salas LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "36632065", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "salazar-garcia dc": {"display": "Salazar-García DC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}, {"acc": "PRJNA445215", "pmid": "29959351", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "salcher mm": {"display": "Salcher MM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884026", "pmid": "36724220", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic investigation of lake Issyk-Kul, Kyrgyzstan"}]}, "saldiva phn": {"display": "Saldiva PHN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA894691", "pmid": "37082122", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Maternal exposure to air pollution changes gut microbiota in mice"}]}, "saldova r": {"display": "Saldova R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "37230981", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJEB48251", "pmid": "39365058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "saleem a": {"display": "Saleem A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "saleena lm": {"display": "Saleena LM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA941822", "pmid": "37006617", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Mining nitrile hydrolysing enzymes from coal metagenome"}, {"acc": "PRJNA941822", "pmid": "37043060", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Mining nitrile hydrolysing enzymes from coal metagenome"}]}, "saleh-mghir a": {"display": "Saleh-Mghir A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1121295", "pmid": "38964511", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FEDEX Study Fecal Metagenomes"}]}, "salekdeh gh": {"display": "Salekdeh GH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746430", "pmid": "35676509", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "camel rumen metagenome Raw sequence reads"}]}, "salem je": {"display": "Salem JE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "salerno p": {"display": "Salerno P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA955235", "pmid": "39945545", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}]}, "saletore y": {"display": "Saletore Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "salgado cg": {"display": "Salgado CG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "saliba m": {"display": "Saliba M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821920", "pmid": "41782637", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mental Health Screening for Babies. What can we learn from infant and caregiver behaviors…"}]}, "salimnia h": {"display": "Salimnia H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA660443", "pmid": "34785751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the human gut during enteric infection"}]}, "salinas jl": {"display": "Salinas JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1236482", "pmid": "42020750", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Short-term clinical evolution of Enterococcus faecium"}]}, "salipante sj": {"display": "Salipante SJ", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1015704", "pmid": "40042126", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal and oropharyngeal microbiota from infants with cystic fibrosis on and off beta-lact…"}, {"acc": "PRJNA1177516", "pmid": "40483244", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Changes in Fecal Microbiota in Adults with Cystic Fibrosis with 6 Months of CFTR Modulato…"}, {"acc": "PRJNA860728", "pmid": "36121157", "pos": "last", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "GenCap-Seq Selectively Enriches Bacterial DNA and Enables Genome-wide Measurement of Intr…"}]}, "saliu tp": {"display": "Saliu TP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1201756", "pmid": "37940330", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome Metagenome"}]}, "salminen s": {"display": "Salminen S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA384716", "pmid": "30250208", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "salo j": {"display": "Salo J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA543520", "pmid": "31337807", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "32239170", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}]}, "salo te": {"display": "Salo TE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821542", "pmid": "39551356", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut metagenomes from mothers and their infants in the EDIA study"}]}, "salojarvi j": {"display": "Salojärvi J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB12357", "pmid": "27126044", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB46778", "pmid": "27126044", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}, {"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "salomon j": {"display": "Salomon J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA240141", "pmid": "25208077", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Elephant feces Metagenome"}, {"acc": "PRJNA240141", "pmid": "36284144", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "salonen a": {"display": "Salonen A", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB11685", "pmid": "26811868", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children"}, {"acc": "PRJEB27325", "pmid": "30214024", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}, {"acc": "PRJEB27325", "pmid": "30326954", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}, {"acc": "PRJEB52774", "pmid": "31253623", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB52774", "pmid": "36274732", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB52774", "pmid": "37731926", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB64567", "pmid": "33007265", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Maternal FMT in Cesarean-Born Infants - WGS sequencing of infants (1w to 1year) and mater…"}, {"acc": "PRJEB70237", "pmid": "38838470", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB70237", "pmid": "39092808", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB70237", "pmid": "40315414", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB70237", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB89462", "pmid": "41873970", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of phage enrichment on the observed infant gut phageome"}]}, "salonen m": {"display": "Salonen M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA475246", "pmid": "35685890", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "salvador mb": {"display": "Salvador MB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "salvador sls": {"display": "Salvador SLS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA846723", "pmid": "39527605", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of oral administration of Bifidobacterium animalis subsp. lactis HN019 on the tre…"}]}, "salvadori g": {"display": "Salvadori G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1009231", "pmid": "39019886", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Born in the twilight of antbiotics"}, {"acc": "PRJNA876384", "pmid": "36620054", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Microbial DNA extraction of high-host content and low biomass samples: optimized protocol…"}]}, "salvatierra g": {"display": "Salvatierra G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912682", "pmid": "38272215", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}]}, "salvetti e": {"display": "Salvetti E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746509", "pmid": "34946200", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota in an infant with propionic acidemia before and after probiotic supplement…"}]}, "salvia r": {"display": "Salvia R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB67641", "pmid": "38709303", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental Plaque Microbiota Sequence Counts for Microbial Profiling and Resistance Genes Det…"}]}, "salzberg sl": {"display": "Salzberg SL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA745199", "pmid": "29340642", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics sequencing of infectious microbes from ocular sarcoidosis tissue specimens"}]}, "salzberger b": {"display": "Salzberger B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "salzman nh": {"display": "Salzman NH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA259274", "pmid": "25568281", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Wake Forest Vervet Microbiome Project"}]}, "samadelli m": {"display": "Samadelli M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}]}, "samarra a": {"display": "Samarra A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB74322", "pmid": "40603287", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJNA1227883", "pmid": "40603287", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}]}, "samayoa e": {"display": "Samayoa E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}]}, "samdapawinde kagone t": {"display": "Samdapawindé Kagoné T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}]}, "samelak-czajka a": {"display": "Samelak-Czajka A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA749919", "pmid": "35589762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An optimized approach to the metagenomic population studies: from sample donation to comm…"}]}, "sammons sl": {"display": "Sammons SL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1295573", "pmid": "41760690", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The intestinal microbiome of patients with newly diagnosed invasive breast cancer and duc…"}]}, "sammouri j": {"display": "Sammouri J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "sampoleo r": {"display": "Sampoleo R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "27795347", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "sampson tr": {"display": "Sampson TR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB17694", "pmid": "27912057", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Di…"}]}, "samuel j": {"display": "Samuel J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273078", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Noma oral microbiome raw sequence reads"}]}, "samuel tm": {"display": "Samuel TM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63183", "pmid": "37457984", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Interactions Between Bifidobacterium and Bacteroides and Human Milk Oligosaccharides and…"}]}, "samuels y": {"display": "Samuels Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "samuelsen o": {"display": "Samuelsen Ø", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB32631", "pmid": "36456554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}]}, "sana tr": {"display": "Sana TR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961698", "pmid": "37610205", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Very Early Life Microbiome and Metabolome Correlates with Primary Vaccination Variability…"}]}, "sanborn ma": {"display": "Sanborn MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA683873", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Severe acute respiratory syndrome coronavirus 2 Genome sequencing"}]}, "sanchez c": {"display": "Sanchez C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1086674", "pmid": "39138352", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Impact of Oral Feedings on the Preterm Infant Microbiome and Metabolome"}]}, "sanchez ca": {"display": "Sanchez CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "sanchez g": {"display": "Sanchez G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "sanchez jmh": {"display": "Sánchez JMH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746290", "pmid": "35210415", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Circulating Microbiome in Myeloid Malignancy"}]}, "sanchez-flores a": {"display": "Sanchez-Flores A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA721692", "pmid": "36786619", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "METAGENOMIC ANALYSIS OF MEXICAN CHILDHOOD GUT MICROBIOTA"}]}, "sanchez-gallardo r": {"display": "Sanchez-Gallardo R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "37230981", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "sanchez-quinto f": {"display": "Sánchez-Quinto F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "sanchez-tejerina d": {"display": "Sánchez-Tejerina D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "sandborn wj": {"display": "Sandborn WJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}, {"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}]}, "sandbu r": {"display": "Sandbu R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}, {"acc": "PRJEB59861", "pmid": "31678062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "sander c": {"display": "Sander C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA259179", "pmid": "25337874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Studies of intestinal microbiome and infection resistance"}]}, "sanderman r": {"display": "Sanderman R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "sanders db": {"display": "Sanders DB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1015704", "pmid": "40042126", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal and oropharyngeal microbiota from infants with cystic fibrosis on and off beta-lact…"}]}, "sanders eam": {"display": "Sanders EAM", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA555020", "pmid": "31676793", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "36380002", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA613032", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life and effects of early life antibiotics, annotated shotgun s…"}, {"acc": "PRJNA613054", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal resistome in early life and effects of early life antibiotics, annotated shotgun se…"}]}, "sanders imjg": {"display": "Sanders IMJG", "group": false, "n_studies": 10, "studies": [{"acc": "PRJDB4176", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1690", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB21528", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB22893", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome impacts response to PD-1 immunotherapy in melanoma patients"}, {"acc": "PRJEB27005", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB39223", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB44737", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJNA231909", "pmid": "39885121", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "39885121", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA48479", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "sanders jg": {"display": "Sanders JG", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}, {"acc": "PRJNA504891", "pmid": "32427907", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "sandhu k": {"display": "Sandhu K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}]}, "sandoval k": {"display": "Sandoval K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "sandstrom a": {"display": "Sandström A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "sandstrom s": {"display": "Sandstrom S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078287", "pmid": "39425237", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Infant Upper Respiratory Microbiome"}]}, "sanford ja": {"display": "Sanford JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA551026", "pmid": "32130897", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Monogenic skin disease driven by staphylococcal dysbiosis"}]}, "sang c": {"display": "Sang C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "sang x": {"display": "Sang X", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA433058", "pmid": "37854337", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA633324", "pmid": "33751816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Comparative microbial antibiotic resistome between urban and deep forest environments"}]}, "sangrajang s": {"display": "Sangrajang S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "sanguinetti m": {"display": "Sanguinetti M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA643802", "pmid": "32859933", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "FMT for diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal…"}]}, "sangwan n": {"display": "Sangwan N", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB14474", "pmid": "28539477", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}, {"acc": "PRJEB20527", "pmid": "26627545", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Corticosteroid therapy and airflow obstruction influence the bronchial microbiome, which…"}]}, "sanitation hygiene infant nutrition efficacy (shine) trial team": {"display": "Sanitation Hygiene Infant Nutrition Efficacy (SHINE) Trial Team", "group": true, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "39341154", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "sankaranarayanan k": {"display": "Sankaranarayanan K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}, {"acc": "PRJNA445215", "pmid": "29959351", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "sanna s": {"display": "Sanna S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "sannikov a": {"display": "Sannikov A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52550", "pmid": "36697964", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of samples suspected of featuring cable bacteria genomic DNA with s…"}]}, "sano k": {"display": "Sano K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB5383", "pmid": "28095784", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of a novel bovine enterovirus possessing highly divergent amino acid seque…"}]}, "sanogo m": {"display": "Sanogo M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "sanoner p": {"display": "Sanoner P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "sanschagrin s": {"display": "Sanschagrin S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629517", "pmid": "34145447", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "DFO - beads in situ microcosms Raw sequence reads"}]}, "sansonetti pj": {"display": "Sansonetti PJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "sant ke": {"display": "Sant KE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB57859", "pmid": "36612923", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Analysis of Microbial Contamination in the U.S. Portion of the Tijuana River…"}]}, "santer dm": {"display": "Santer DM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "santhaman r": {"display": "Santhaman R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573821", "pmid": "32919472", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Whole Meta-genome shotgun sequencing of stool samples from human treated with antibiotics"}]}, "santhanam a": {"display": "Santhanam A", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "santi i": {"display": "Santi I", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "santin-duran m": {"display": "Santin-Duran M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1406675", "pmid": "41901112", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "GEO accession GSE317287 is currently private and is scheduled to be released on Jul 01, 2…"}]}, "santoro ep": {"display": "Santoro EP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA649484", "pmid": "34389536", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "santos a": {"display": "Santos A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA894691", "pmid": "37082122", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Maternal exposure to air pollution changes gut microbiota in mice"}]}, "santos afa": {"display": "Santos AFA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA847605", "pmid": "36565815", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosa…"}]}, "santos d": {"display": "Santos D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "35750157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "36131032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "santos jd": {"display": "Santos JD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "35750157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "36131032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "santos y": {"display": "Santos Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA916952", "pmid": "36758519", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Stanford's Outcomes Research in Kids (STORK) Virome"}]}, "santos-bay l": {"display": "Santos-Bay L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64334", "pmid": "38294254", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Multi-omics of host-gut microbiota interactions in healthy and parasitized farmed Atlanti…"}]}, "sanville jl": {"display": "Sanville JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA955235", "pmid": "39945545", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}, {"acc": "PRJNA955235", "pmid": "42262087", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}]}, "sanyang c": {"display": "Sanyang C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28671", "pmid": "34972822", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A_novel_nano_iron_supplement__IHAT__to_safely_combact_iron_deficiency_and_anemia"}]}, "sanz y": {"display": "Sanz Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB25727", "pmid": "31138673", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The impact of AXOS intake in overweight individuals with metabolic syndrome."}, {"acc": "PRJEB36898", "pmid": "33629506", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics analysis on overweight subjects under a caloric restriction intervention with…"}]}, "sar p": {"display": "Sar P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1279970", "pmid": "42108276", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Carbon dioxide utilizing microaerophilic and anaerobic chemolithoautotrophic enrichments…"}]}, "sari s": {"display": "Sari S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "sarikhan s": {"display": "Sarikhan S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746430", "pmid": "35676509", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "camel rumen metagenome Raw sequence reads"}]}, "sarkar d": {"display": "Sarkar D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "sarkar s": {"display": "Sarkar S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1279970", "pmid": "42108276", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Carbon dioxide utilizing microaerophilic and anaerobic chemolithoautotrophic enrichments…"}]}, "sarker s": {"display": "Sarker S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA596855", "pmid": "31383310", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Disease surveillance in wild Victorian cacatuids"}]}, "sarker sa": {"display": "Sarker SA", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB42539", "pmid": "34756056", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "FUT2/FUT3 genes sequences and nasopharyngeal shotgun metagenomics from the Microbiota and…"}, {"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}, {"acc": "PRJNA506325", "pmid": "23102968", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Phages Raw sequence reads"}, {"acc": "PRJNA806984", "pmid": null, "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}]}, "sarma a": {"display": "Sarma A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "sarno d": {"display": "Sarno D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "saroj db": {"display": "Saroj DB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA607004", "pmid": "31964505", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacillus coagulans LBSC Impact on Gut microbiota"}]}, "sasai t": {"display": "Sasai T", "group": false, "n_studies": 11, "studies": [{"acc": "PRJDB4176", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB17632", "pmid": "37188713", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Subspecies in the global human gut microbiome"}, {"acc": "PRJEB6070", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6456", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB7774", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJNA217052", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Fiji COMP"}, {"acc": "PRJNA268964", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA290380", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA485056", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}]}, "sasajima s": {"display": "Sasajima S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}, {"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "sasaki m": {"display": "Sasaki M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB3158", "pmid": "25381053", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shrew fecal metagenome"}]}, "sasaki t": {"display": "Sasaki T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "sastry kj": {"display": "Sastry KJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "satagopam vp": {"display": "Satagopam VP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "28721231", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "sather c": {"display": "Sather C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29281620", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "sathitkowitchai w": {"display": "Sathitkowitchai W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA637175", "pmid": "33668840", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}]}, "sato y": {"display": "Sato Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "satokari r": {"display": "Satokari R", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB32631", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA301903", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA384716", "pmid": "30250208", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA396794", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA446038", "pmid": "30526683", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA532310", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut metagenome"}]}, "satta g": {"display": "Satta G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60914", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Roles of gut microbiota-mediated nutrient competition and metabolite inhibition in the in…"}]}, "satten ga": {"display": "Satten GA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA725416", "pmid": "33996627", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Emory University African American Vaginal, Oral, and Gut Microbiome in Pregnancy Cohort S…"}]}, "sauceda c": {"display": "Sauceda C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}]}, "sauer pj": {"display": "Sauer PJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1187541", "pmid": "39753133", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Raw metagenomics sequencing from human hippocampi."}]}, "saugstad od": {"display": "Saugstad OD", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1009231", "pmid": "39019886", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Born in the twilight of antbiotics"}, {"acc": "PRJNA876384", "pmid": "36620054", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Microbial DNA extraction of high-host content and low biomass samples: optimized protocol…"}]}, "sauk j": {"display": "Sauk J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB7772", "pmid": "25619688", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}]}, "saunders mem": {"display": "Saunders MEM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1261853", "pmid": "38816345", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia sp. CA6269 genome sequencing from clinical and environmental samples"}]}, "saunders sr": {"display": "Saunders SR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "sausset r": {"display": "Sausset R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}]}, "sauter t": {"display": "Sauter T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "28721231", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "save d": {"display": "Save D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1355224", "pmid": "42037384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human metagenomic samples Metagenome"}]}, "savilahti e": {"display": "Savilahti E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27325", "pmid": "30214024", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}, {"acc": "PRJEB27325", "pmid": "30326954", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}]}, "savio dsf": {"display": "Sávio DSF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA846723", "pmid": "39527605", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of oral administration of Bifidobacterium animalis subsp. lactis HN019 on the tre…"}]}, "savoi d": {"display": "Savoi D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}]}, "sawa h": {"display": "Sawa H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB3158", "pmid": "25381053", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shrew fecal metagenome"}]}, "sawane k": {"display": "Sawane K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB14457", "pmid": "36363762", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of healthy Japanese adult"}]}, "sawaswong v": {"display": "Sawaswong V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA548968", "pmid": "31652508", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Fecal virome of wild and captive Cynomolgus macaques (Macaca fascicularis) in Thailand."}]}, "sawhney ss": {"display": "Sawhney SS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1060349", "pmid": "40175737", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Weaning accelerates and transforms within-host adaptation in the infant gut microbiome"}]}, "saxena a": {"display": "Saxena A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}]}, "saxena d": {"display": "Saxena D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}]}, "sayar e": {"display": "Sayar E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "sayeem bin shahid asm": {"display": "Sayeem Bin Shahid ASM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "sayols-baixeras s": {"display": "Sayols-Baixeras S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "sazal m": {"display": "Sazal M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA301903", "pmid": "36748547", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}]}, "sbihi h": {"display": "Sbihi H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "sburlan sc": {"display": "Sburlan ŞC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1215350", "pmid": "40600797", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "16S rRNA sequences of sediment incubations from a eutrophic marine lake"}]}, "scaglione gl": {"display": "Scaglione GL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675110", "pmid": "33659220", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiome signature in COVID-19 positive patients"}]}, "scaletta j": {"display": "Scaletta J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28369502", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "scapoli c": {"display": "Scapoli C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976261", "pmid": "31153098", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole metagenomic shotgun sequencing of the subgingival microbiome of diabetics and non-d…"}, {"acc": "PRJNA976261", "pmid": "37257865", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole metagenomic shotgun sequencing of the subgingival microbiome of diabetics and non-d…"}]}, "scarchilli c": {"display": "Scarchilli C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA811790", "pmid": "37816747", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial and viral dispersal along the natural water cycle"}]}, "scaria j": {"display": "Scaria J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA484151", "pmid": "31379808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural and Urban infant''s fecal microbiota study"}]}, "scavia g": {"display": "Scavia G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB23207", "pmid": "29468143", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic characterization of the human intestinal microbiota in faecal samples from ST…"}]}, "schaap fg": {"display": "Schaap FG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "schaaphok ar": {"display": "Schaaphok AR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87602", "pmid": "37243505", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteria in colitis associated cancer development"}]}, "schacht sr": {"display": "Schacht SR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37731", "pmid": "39015337", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}]}, "schadt ee": {"display": "Schadt EE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "schafers c": {"display": "Schäfers C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA609054", "pmid": "33416984", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic data set of enrichment samples from azores 2018 Raw sequence reads"}]}, "schaffner sf": {"display": "Schaffner SF", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}, {"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "schalich km": {"display": "Schalich KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA986525", "pmid": "38441000", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "2'-fucoysllactose treatment of C57BL/6 adult mice fecal metagenomics"}]}, "schapira ahv": {"display": "Schapira AHV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59994", "pmid": "37892187", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evaluation of an Adapted Semi-Automated DNA Extraction for Human Salivary Shotgun Metagen…"}]}, "scharl m": {"display": "Scharl M", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1275869", "pmid": "41620544", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Sequencing of stool samples from Ethiopian children from Adama (Ethiopia)"}, {"acc": "PRJNA1345963", "pmid": "41620544", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Sequencing of stool samples from Ethiopian children from Adama (Ethiopia)"}, {"acc": "PRJNA504891", "pmid": "41620544", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA716780", "pmid": "41620544", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "schaub r": {"display": "Schaub R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}, {"acc": "PRJNA942254", "pmid": "37650612", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomics of fecal samples from ant-eating mammal species"}]}, "scheffel j": {"display": "Scheffel J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "scheible k": {"display": "Scheible K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "scheid c": {"display": "Scheid C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "scheinerman a": {"display": "Scheinerman A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "20976137", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "schembri ma": {"display": "Schembri MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893826", "pmid": "38622998", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Culture-independent long read metagenomic diagnostics for genomic surveillance and infect…"}]}, "scheperjans f": {"display": "Scheperjans F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59350", "pmid": "39143178", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "deep shotgun DNA sequencing of 136 patient’s fecal samples (Parkinson vs Control)"}, {"acc": "PRJEB59350", "pmid": "40258842", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "deep shotgun DNA sequencing of 136 patient’s fecal samples (Parkinson vs Control)"}]}, "scher ju": {"display": "Scher JU", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1420872", "pmid": "41027803", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of gut/stool samples Metagenome"}]}, "scherjon s": {"display": "Scherjon S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "scherzi t": {"display": "Scherzi T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1320699", "pmid": "42088498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "16S sequencing of infant stool Metagenome"}]}, "scheynius a": {"display": "Scheynius A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB84944", "pmid": "40885737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of 56 mother-infant dyads from the ALADDIN birth cohort"}]}, "schiaffino f": {"display": "Schiaffino F", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA834762", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "38427700", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA837236", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "38427700", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA912682", "pmid": "38272215", "pos": "first", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "38427700", "pos": "first", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "39727415", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}]}, "schibler kr": {"display": "Schibler KR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA63661", "pmid": "25332767", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA63661", "pmid": "26110908", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "schierding w": {"display": "Schierding W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA637785", "pmid": "33346848", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA637785", "pmid": "33985595", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}]}, "schierhold k": {"display": "Schierhold K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49648", "pmid": "39155318", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Neolithic Yersinia pestis infections in humans and a dog"}]}, "schiering i": {"display": "Schiering I", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA555020", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA613032", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life and effects of early life antibiotics, annotated shotgun s…"}, {"acc": "PRJNA613054", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal resistome in early life and effects of early life antibiotics, annotated shotgun se…"}]}, "schiffer j": {"display": "Schiffer J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29281620", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "schiffler fb": {"display": "Schiffler FB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA847605", "pmid": "36565815", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosa…"}]}, "schiffman jd": {"display": "Schiffman JD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "schild-prufert k": {"display": "Schild-Prüfert K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA63661", "pmid": "41250602", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "schimmel p": {"display": "Schimmel P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB2778", "pmid": "33538807", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}]}, "schintlmeister a": {"display": "Schintlmeister A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1033532", "pmid": "38014294", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Evaluating the impact of pharmaceuticals on the human gut microbiome Raw sequence reads"}]}, "schinzari g": {"display": "Schinzari G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA643802", "pmid": "32859933", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "FMT for diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal…"}]}, "schirmer m": {"display": "Schirmer M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB8179", "pmid": "25586220", "pos": "first", "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Synthetic community metagenomes study"}, {"acc": "PRJNA1307628", "pmid": "41461922", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbial oral-gut translocation in advanced chronic liver disease is linked to exacerbat…"}]}, "schlam i": {"display": "Schlam I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1295573", "pmid": "41760690", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The intestinal microbiome of patients with newly diagnosed invasive breast cancer and duc…"}]}, "schlaudecker ep": {"display": "Schlaudecker EP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "schlebusch cm": {"display": "Schlebusch CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA930765", "pmid": "36869137", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia felis reads and MAG recovered from a child who lived in southern Africa 2000 y…"}]}, "schlebusch s": {"display": "Schlebusch S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893826", "pmid": "38622998", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Culture-independent long read metagenomic diagnostics for genomic surveillance and infect…"}]}, "schleiss mr": {"display": "Schleiss MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019702", "pmid": "39043677", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}]}, "schleper c": {"display": "Schleper C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1108908", "pmid": null, "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1108960", "pmid": null, "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1109334", "pmid": null, "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}]}, "schleussner e": {"display": "Schleußner E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA799199", "pmid": "35256725", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Evaluation of microbiome enrichment and host DNA depletion in human vaginal samples using…"}]}, "schluter d": {"display": "Schlüter D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51501", "pmid": "36416760", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Predicting butyrate- and propionate-forming bacteria of gut microbiota from sequencing da…"}, {"acc": "PRJEB51501", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Predicting butyrate- and propionate-forming bacteria of gut microbiota from sequencing da…"}]}, "schmeisser c": {"display": "Schmeisser C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA240141", "pmid": "25208077", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "schmeler km": {"display": "Schmeler KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "schmeltzer er": {"display": "Schmeltzer ER", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA747032", "pmid": "34636674", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of library preparation on metagenomic profiles"}]}, "schmid r": {"display": "Schmid R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1013332", "pmid": "38206014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Scalp microbiome study"}]}, "schmid rm": {"display": "Schmid RM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "schmidt a": {"display": "Schmidt A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27927929", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "schmidt c": {"display": "Schmidt C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "schmidt e": {"display": "Schmidt E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "schmidt m": {"display": "Schmidt M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA749919", "pmid": "35589762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An optimized approach to the metagenomic population studies: from sample donation to comm…"}]}, "schmidt s": {"display": "Schmidt S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "schmidt ts": {"display": "Schmidt TS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA289586", "pmid": "30747106", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}]}, "schmidt tsb": {"display": "Schmidt TSB", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB20308", "pmid": "29669589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Similarity of the dog and human gut microbiomes in gene content and response to diet"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "schmidt vt": {"display": "Schmidt VT", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46788", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB86954", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Integrating Metagenomics for Helminth Detection"}, {"acc": "PRJNA48479", "pmid": "41358671", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "schmitt a": {"display": "Schmitt A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "schmitt m": {"display": "Schmitt M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "schmolcke u": {"display": "Schmölcke U", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB42185", "pmid": "34192537", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}, {"acc": "PRJEB49648", "pmid": "39155318", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Neolithic Yersinia pestis infections in humans and a dog"}]}, "schnabel d": {"display": "Schnabel D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746290", "pmid": "35210415", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Circulating Microbiome in Myeloid Malignancy"}]}, "schnadower d": {"display": "Schnadower D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1148144", "pmid": "40128855", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Biosignatures of late-onset extraintestinal bacterial infections"}]}, "schneeberger phh": {"display": "Schneeberger PHH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA300541", "pmid": "38049420", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "schneider am": {"display": "Schneider AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA856701", "pmid": "36165604", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin microbiome of forehead in children with and without acne"}]}, "schneider bs": {"display": "Schneider BS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA80601", "pmid": "23554892", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterization of the nasopharyngeal virome in patients with influenza-like illness of…"}]}, "schneider j": {"display": "Schneider J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "schneider jg": {"display": "Schneider JG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA289586", "pmid": "27723761", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}]}, "schneider s": {"display": "Schneider S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "schnell s": {"display": "Schnell S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47581", "pmid": "32423128", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic Analysis of Regularly Microwave-Treated and Untreated Domestic Kitchen Sponges"}]}, "schnitzler p": {"display": "Schnitzler P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "schnoll-sussman f": {"display": "Schnoll-Sussman F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA297869", "pmid": "26614063", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human gastric microbiome metagenome"}]}, "schnorr sl": {"display": "Schnorr SL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA278393", "pmid": "25981789", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA278393", "pmid": "27462302", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}]}, "schnupf p": {"display": "Schnupf P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "schnur m": {"display": "Schnur M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA797011", "pmid": "35707545", "pos": null, "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "T cell receptor repertoire in premature infants"}]}, "schnurr dp": {"display": "Schnurr DP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "21779173", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "schochetman g": {"display": "Schochetman G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "20976137", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "schoelmerich mc": {"display": "Schoelmerich MC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA698986", "pmid": "37973815", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA914281", "pmid": null, "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Tandem repeats in giant archaeal Borg elements undergo rapid evolution and create new int…"}]}, "schoemaker rjw": {"display": "Schoemaker RJW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA798191", "pmid": "36038938", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bamboo microbiota study in infants"}]}, "schoenfeld d": {"display": "Schoenfeld D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46333", "pmid": "23698366", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "schoeny me": {"display": "Schoeny ME", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}]}, "schofield z": {"display": "Schofield Z", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "scholin ca": {"display": "Scholin CA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA679730", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2018"}, {"acc": "PRJNA702522", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2019"}]}, "scholz d": {"display": "Scholz D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA678472", "pmid": "34407825", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Long-term persistence of crAss-like phage crAss001 in Bacteroides intestinalis cultures i…"}]}, "scholz m": {"display": "Scholz M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA339914", "pmid": "28144631", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "schon m": {"display": "Schön M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA781406", "pmid": "35444202", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Vanishing Glaciers Project"}]}, "schonlein m": {"display": "Schönlein M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "schopf l": {"display": "Schopf L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "schoppmeier u": {"display": "Schoppmeier U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76913", "pmid": "39881980", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors affecting the gut microbiota composition of children with CHD"}]}, "schott hf": {"display": "Schött HF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB25727", "pmid": "31138673", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The impact of AXOS intake in overweight individuals with metabolic syndrome."}]}, "schout l": {"display": "Schout L", "group": false, "n_studies": 10, "studies": [{"acc": "PRJDB4176", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1690", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB21528", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB22893", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome impacts response to PD-1 immunotherapy in melanoma patients"}, {"acc": "PRJEB27005", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB39223", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB44737", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJNA231909", "pmid": "39885121", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "39885121", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA48479", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "schouten s": {"display": "Schouten S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4261", "pmid": "21593795", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of two depths of the Arabian sea oxygen minimum zone using SOLiD a…"}]}, "schramm a": {"display": "Schramm A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52550", "pmid": "36697964", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of samples suspected of featuring cable bacteria genomic DNA with s…"}]}, "schramm c": {"display": "Schramm C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB86263", "pmid": "39218875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gender-affirming hormonal therapy induces a gender-concordant fecal metagenome transition…"}]}, "schramm l": {"display": "Schramm L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA818303", "pmid": "36823020", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated metagenomics, metaviromics, and metatranscriptomics reveal colonic virome-bact…"}]}, "schreiber l": {"display": "Schreiber L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629517", "pmid": "34145447", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "DFO - beads in situ microcosms Raw sequence reads"}]}, "schreiber s": {"display": "Schreiber S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}, {"acc": "PRJEB42185", "pmid": "34192537", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}]}, "schrenzel j": {"display": "Schrenzel J", "group": false, "n_studies": 23, "studies": [{"acc": "PRJEB20595", "pmid": "30065706", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hepatic brucelloma studied by next generation sequencing"}, {"acc": "PRJEB20877", "pmid": "28930150", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Detection of bacterial pathogens from broncho-alveolar lavage by next-generation sequenci…"}, {"acc": "PRJEB21816", "pmid": "30991963", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Listeria monocytogenes abdominal periaortitis"}, {"acc": "PRJEB24753", "pmid": "31448292", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Neisseria meningitidis"}, {"acc": "PRJEB24843", "pmid": "30714464", "pos": null, "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "The intestinal microbiota predisposes to traveller’s diarrhoea and to the carriage of mul…"}, {"acc": "PRJEB25228", "pmid": "31616669", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Endocarditis due to Cardiobacterium hominis"}, {"acc": "PRJEB26080", "pmid": "30356779", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Microbiota of infected dental roots indentified by 16S rRNA gene amplicon sequencing"}, {"acc": "PRJEB33794", "pmid": "32185143", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Changes in Microbiota Profiles After Prolonged Frozen Storage of Stool Suspensions"}, {"acc": "PRJEB35816", "pmid": "32585945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota of carriers of extended-spectrum beta-lactamase or carbapenemase-producing…"}, {"acc": "PRJEB36797", "pmid": "32711187", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The GLP-1R agonist liraglutide limits hepatic lipotoxicity and inflammatory response in m…"}, {"acc": "PRJEB39870", "pmid": "33646178", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Oral microbial community profiles in Parkinson’s disease"}, {"acc": "PRJEB40995", "pmid": "34492446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of antibiotic duration on the intestinal microbiota and resistome"}, {"acc": "PRJEB43505", "pmid": "34535959", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut barrier and microbiota changes with glycine and branched chain amino acids supplement…"}, {"acc": "PRJEB43581", "pmid": "34295911", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}, {"acc": "PRJEB43581", "pmid": "34737977", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}, {"acc": "PRJEB44108", "pmid": "37065965", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A bone of contention"}, {"acc": "PRJEB44214", "pmid": "34983654", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in the gut microbiome in colon cancer surgery patients: a pilot observational stu…"}, {"acc": "PRJEB44898", "pmid": "34295911", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hyperammonemia syndrome following lung transplantation."}, {"acc": "PRJEB47877", "pmid": "37938717", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Challenges in bacterial DNA enrichment and quantification in tissues"}, {"acc": "PRJEB50897", "pmid": "40244028", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental pulp"}, {"acc": "PRJEB57944", "pmid": "40182766", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Diagnosing endocarditis by metagenomics"}, {"acc": "PRJEB60931", "pmid": "37735787", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Mycoplasma genitalium endocarditis"}, {"acc": "PRJEB65720", "pmid": "37722530", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acute bacterial meningitis due to Neisseria meningitidis serotype B missed by a multiplex…"}, {"acc": "PRJEB81450", "pmid": "40562730", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Streptococcus gordonii endocarditis"}]}, "schretter ce": {"display": "Schretter CE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB17694", "pmid": "27912057", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Di…"}]}, "schroder j": {"display": "Schröder J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB86263", "pmid": "39218875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gender-affirming hormonal therapy induces a gender-concordant fecal metagenome transition…"}]}, "schroeder h": {"display": "Schroeder H", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}, {"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}, {"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}, {"acc": "PRJNA445215", "pmid": "29959351", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "schroer hw": {"display": "Schroer HW", "group": false, "n_studies": 27, "studies": [{"acc": "PRJEB10878", "pmid": "42171373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB12449", "pmid": "42171373", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Reproducibility of associations between the human gut microbiome and colorectal cancer as…"}, {"acc": "PRJEB24041", "pmid": "42171373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Selective maternal seeding and environment shape the human gut microbiome"}, {"acc": "PRJEB32631", "pmid": "42171373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB33500", "pmid": "42171373", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Mediterranean diet intervention in overweight and obese subjects leads to multiple benefi…"}, {"acc": "PRJEB35738", "pmid": "42171373", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Clostridium difficile infection patient microbiome"}, {"acc": "PRJEB37249", "pmid": "42171373", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Statin therapy is associated with lower prevalence of gut microbiota dysbiosis"}, {"acc": "PRJEB38742", "pmid": "42171373", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Imidazole propionate is increased in diabetes and associated with dietary patterns and al…"}, {"acc": "PRJEB45799", "pmid": "42171373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB6070", "pmid": "42171373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6456", "pmid": "42171373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6997", "pmid": "42171373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut and Oral Microbiome Dysbiosis in Rheumatoid Arthritis"}, {"acc": "PRJEB7774", "pmid": "42171373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "42171373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB9584", "pmid": "42171373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "KCL_twins2"}, {"acc": "PRJNA1019702", "pmid": "42171373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}, {"acc": "PRJNA398089", "pmid": "42171373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA422434", "pmid": "42171373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA447983", "pmid": "42171373", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}, {"acc": "PRJNA48479", "pmid": "42171373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA564397", "pmid": "42171373", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics Reveals Impact of Geography, Antibiotics and Acute Diarrhoeal Disease on the…"}, {"acc": "PRJNA674880", "pmid": "42171373", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Microbiota Restoration Reduces Antibiotic Resistant Bacteria Gut Colonization in Patients…"}, {"acc": "PRJNA685168", "pmid": "42171373", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Multi-omics suggest diverse mechanisms for response to biologic therapies in IBD"}, {"acc": "PRJNA705895", "pmid": "42171373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA748262", "pmid": "42171373", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}, {"acc": "PRJNA752686", "pmid": "42171373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Profile of the Gut Microbiome of Preterm Infants and its Association to Infan…"}, {"acc": "PRJNA999635", "pmid": "42171373", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut Microbiome of isolated villages in rural Honduras"}]}, "schrotz-king p": {"display": "Schrotz-King P", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "schubert ml": {"display": "Schubert ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "schuenemann vj": {"display": "Schuenemann VJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "schulkers escalante k": {"display": "Schulkers Escalante K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1086674", "pmid": "39138352", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The Impact of Oral Feedings on the Preterm Infant Microbiome and Metabolome"}]}, "schultsz c": {"display": "Schultsz C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "41986657", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA688274", "pmid": "34092249", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Netherland Travelers"}]}, "schultz ac": {"display": "Schultz AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12466", "pmid": "26161690", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Meta-genomic analysis of toilet waste from long distance flights"}]}, "schultz d": {"display": "Schultz D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078280", "pmid": "38405928", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Quantifying forms and functions of intestinal bile acid pools in mice"}]}, "schultz n": {"display": "Schultz N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA297869", "pmid": "26614063", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human gastric microbiome metagenome"}]}, "schulz s": {"display": "Schulz S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961698", "pmid": "37610205", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Very Early Life Microbiome and Metabolome Correlates with Primary Vaccination Variability…"}]}, "schumacher h": {"display": "Schumacher H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "schupp jm": {"display": "Schupp JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "28721231", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "29075368", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "schuppe-koistinen i": {"display": "Schuppe-Koistinen I", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37731", "pmid": "33208514", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "33816334", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "35553675", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "39015337", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "39160615", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB37731", "pmid": "42203854", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB38528", "pmid": "42203854", "pos": "last", "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}]}, "schuroff p": {"display": "Schüroff P", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "schuroff pa": {"display": "Schüroff PA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1072081", "pmid": "40237336", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Identifying Biomarkers and Trajectories of Typical Neurodevelopment in Children, the BRAI…"}]}, "schuster je": {"display": "Schuster JE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "schuster sc": {"display": "Schuster SC", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA396840", "pmid": "28979798", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomic and metatranscriptomic analysis of saliva reveals disease-associated microbio…"}, {"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}, {"acc": "PRJNA726032", "pmid": "34172012", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidi…"}]}, "schutte k": {"display": "Schütte K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}]}, "schutte t": {"display": "Schütte T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}]}, "schutz m": {"display": "Schütz M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB10391", "pmid": "26369961", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of ciprofloxacin pertubation on the intestinal resistome and microbiota in two hea…"}]}, "schwab m": {"display": "Schwab M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1138246", "pmid": "40755247", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal metagenomes of Peruvian children"}]}, "schwabkey zi": {"display": "Schwabkey ZI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": "first", "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "schwager e": {"display": "Schwager E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}]}, "schwaneberg u": {"display": "Schwaneberg U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA240141", "pmid": "36284144", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "schwardt nh": {"display": "Schwardt NH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA604820", "pmid": "34936382", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin metagenome from antibiotics treated healthy human subjects"}]}, "schwartz dj": {"display": "Schwartz DJ", "group": false, "n_studies": 12, "studies": [{"acc": "PRJEB59709", "pmid": "38560624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut metagenome harbors metabolic and antibiotic resistance signatures of established…"}, {"acc": "PRJEB8347", "pmid": "42259839", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJNA1148144", "pmid": "40128855", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Biosignatures of late-onset extraintestinal bacterial infections"}, {"acc": "PRJNA1148144", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Biosignatures of late-onset extraintestinal bacterial infections"}, {"acc": "PRJNA1355224", "pmid": "42037384", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human metagenomic samples Metagenome"}, {"acc": "PRJNA301903", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA48479", "pmid": "42259839", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA489090", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA698223", "pmid": "36470885", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "TD Cusco travelers study"}, {"acc": "PRJNA739008", "pmid": "37866373", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Effect of amoxicillin prophylaxis on gut microbiome and resistome for severe acute malnut…"}, {"acc": "PRJNA799247", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA884103", "pmid": "37134153", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}, {"acc": "PRJNA884103", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}, {"acc": "PRJNA945408", "pmid": "38085102", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prev…"}]}, "schwartz s": {"display": "Schwartz S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB2778", "pmid": "22546241", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}]}, "schwartz t": {"display": "Schwartz T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "schwarze j": {"display": "Schwarze J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1080233", "pmid": "39214237", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Breathing Together severe wheeze and asthma cohort"}]}, "schwarzenberg sj": {"display": "Schwarzenberg SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177516", "pmid": "40483244", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Changes in Fecal Microbiota in Adults with Cystic Fibrosis with 6 Months of CFTR Modulato…"}]}, "schweiger m": {"display": "Schweiger M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "schwenninger jl": {"display": "Schwenninger JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "schwinge d": {"display": "Schwinge D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB86263", "pmid": "39218875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gender-affirming hormonal therapy induces a gender-concordant fecal metagenome transition…"}]}, "schyns g": {"display": "Schyns G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA237795", "pmid": "35583332", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Swine feces Targeted Locus (Loci)"}]}, "sclocchi mc": {"display": "Sclocchi MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA655381", "pmid": "33329475", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome of drawings by Leonardo Da Vinci"}]}, "scorza k": {"display": "Scorza K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "41118772", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "scotland s": {"display": "Scotland S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "scott br": {"display": "Scott BR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202388", "pmid": "25028422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "scott e": {"display": "Scott E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "scott j": {"display": "Scott J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}]}, "scott n": {"display": "Scott N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "scott s": {"display": "Scott S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28818890", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "scotto r": {"display": "Scotto R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675110", "pmid": "33659220", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiome signature in COVID-19 positive patients"}]}, "scriba ck": {"display": "Scriba CK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "seabolt mh": {"display": "Seabolt MH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA853174", "pmid": "35891376", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "seale m": {"display": "Seale M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}]}, "sebastiani ml": {"display": "Sebastiani ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA655381", "pmid": "33329475", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome of drawings by Leonardo Da Vinci"}]}, "sebra r": {"display": "Sebra R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "34609275", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "secchettin e": {"display": "Secchettin E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB67641", "pmid": "38709303", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental Plaque Microbiota Sequence Counts for Microbial Profiling and Resistance Genes Det…"}]}, "sedlak rh": {"display": "Sedlak RH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29554870", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "sedlazeck fj": {"display": "Sedlazeck FJ", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1195144", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1224818", "pmid": "38361816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with n…"}]}, "seeberg ka": {"display": "Seeberg KA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "seeberg l": {"display": "Seeberg L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB66169", "pmid": "41540446", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient DNA study provides clues to leprosy susceptibility in medieval Europe"}]}, "seed pc": {"display": "Seed PC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "seed pt": {"display": "Seed PT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB72531", "pmid": "38424099", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prebiotic intervention for muscle function and cognition"}]}, "seedorf h": {"display": "Seedorf H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "seelbinder b": {"display": "Seelbinder B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573821", "pmid": "32919472", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Whole Meta-genome shotgun sequencing of stool samples from human treated with antibiotics"}]}, "seferovic md": {"display": "Seferovic MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA400259", "pmid": "33328537", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human Milk Microbiome Metagenome"}]}, "segal e": {"display": "Segal E", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJNA737472", "pmid": null, "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "segata n": {"display": "Segata N", "group": false, "n_studies": 32, "studies": [{"acc": "PRJEB15371", "pmid": "30661755", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB24041", "pmid": "29496731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Selective maternal seeding and environment shape the human gut microbiome"}, {"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB45799", "pmid": "36653448", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB63351", "pmid": "38104504", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Neuroblastoma is associated with alterations in gut microbiome composition subsequent to…"}, {"acc": "PRJEB6456", "pmid": "37116481", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB74322", "pmid": "38870906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJEB74322", "pmid": "40603287", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}, {"acc": "PRJNA1140720", "pmid": "41565819", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Modelling human microbiome transmission in a nursery setting"}, {"acc": "PRJNA1227883", "pmid": "40603287", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}, {"acc": "PRJNA231909", "pmid": "30661755", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA287207", "pmid": "26231653", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA300541", "pmid": "42312244", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA328899", "pmid": "30661755", "pos": "last", "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "28144631", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "30661755", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}, {"acc": "PRJNA48479", "pmid": "30661755", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "30661755", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA504891", "pmid": "30661755", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "32427907", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA643802", "pmid": "32859933", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "FMT for diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal…"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA947377", "pmid": "38366600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Establishment of a non-Westernized gut microbiota in men who have sex with men is associa…"}, {"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39407346", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "segawa t": {"display": "Segawa T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB3819", "pmid": "26468217", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Novel probiotic bacteria retrieved from wild rock ptarmigans"}]}, "segre ja": {"display": "Segre JA", "group": false, "n_studies": 11, "studies": [{"acc": "PRJNA1156457", "pmid": "39731681", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acanthamoeba sequencing"}, {"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}, {"acc": "PRJNA1369410", "pmid": "42242497", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics sequencing from patients with CD4 lymphopenia"}, {"acc": "PRJNA445389", "pmid": "30586509", "pos": "last", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Sphingomonas koreensis Genome sequencing and assembly"}, {"acc": "PRJNA46333", "pmid": "22310478", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "23050952", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "23698366", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "24170601", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "25279917", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "28679656", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "37054678", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA46333", "pmid": "37946302", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA471898", "pmid": "30397357", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The skin microbiome of DOCK8-deficient patients"}, {"acc": "PRJNA542320", "pmid": "31700190", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacteria Genome sequencing and assembly"}, {"acc": "PRJNA604820", "pmid": "34936382", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin metagenome from antibiotics treated healthy human subjects"}, {"acc": "PRJNA642893", "pmid": "33212154", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin microbiome from cutaneous T-cell lymphoma patients and healthy volunteers"}, {"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "seguin-orlando a": {"display": "Seguin-Orlando A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41240", "pmid": "33434506", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Heterogeneous hunter-gatherer and steppe-related ancestries in Late Neolithic and Bell Be…"}]}, "segurel l": {"display": "Ségurel L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27005", "pmid": "30726303", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}]}, "sehgal n": {"display": "Sehgal N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1138246", "pmid": "40755247", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal metagenomes of Peruvian children"}]}, "seib kl": {"display": "Seib KL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "seifert j": {"display": "Seifert J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB3085", "pmid": "23236009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}]}, "seifert m": {"display": "Seifert M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37731", "pmid": "33208514", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}]}, "seip b": {"display": "Seip B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "seite s": {"display": "Seité S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43611", "pmid": "35140493", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in gut microbiota during balneotherapy"}]}, "seitz a": {"display": "Seitz A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "seki d": {"display": "Seki D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1112760", "pmid": "39679616", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic signatures of early life brain damage"}, {"acc": "PRJNA1230889", "pmid": "42020426", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}, {"acc": "PRJNA1230889", "pmid": null, "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}]}, "sekiguchi y": {"display": "Sekiguchi Y", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA381379", "pmid": "29802288", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut metagenome the kakapo"}, {"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "sekine k": {"display": "Sekine K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "selcuk m": {"display": "Selcuk M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "self s": {"display": "Self S", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB6456", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA475246", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA486782", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA510445", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA630999", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}]}, "selke s": {"display": "Selke S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28287142", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28711653", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30383234", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "sellebjerg f": {"display": "Sellebjerg F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51635", "pmid": "36604748", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}]}, "sellers b": {"display": "Sellers B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "selma-royo m": {"display": "Selma-Royo M", "group": false, "n_studies": 10, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB6456", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB74322", "pmid": "38870906", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJNA1227883", "pmid": "31053102", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "seluanov a": {"display": "Seluanov A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "selvarangan r": {"display": "Selvarangan R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}, {"acc": "PRJNA322324", "pmid": "28369502", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "semchenko ea": {"display": "Semchenko EA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "sen a": {"display": "Sen A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "38782975", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "sen p": {"display": "Sen P", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1044118", "pmid": "38061464", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human oral and gut microbiome in first episode psychosis patients"}, {"acc": "PRJNA231909", "pmid": "36195095", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "sendi p": {"display": "Sendi P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA931814", "pmid": "37720151", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistome and microbiome analysis of stool samples from healthy people using shotgun meta…"}]}, "seneca j": {"display": "Séneca J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1112760", "pmid": "39679616", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic signatures of early life brain damage"}]}, "seo i": {"display": "Seo I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11419", "pmid": "38188664", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}]}, "seok r": {"display": "Seok R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}]}, "seong hj": {"display": "Seong HJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45443", "pmid": "40442154", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJNA979436", "pmid": "40442154", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}]}, "seppey cv": {"display": "Seppey CV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB25144", "pmid": "25874666", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Temporal patterns of soil micro-eukaryotic diversity beneath decomposing pig cadavers as…"}]}, "seppo a": {"display": "Seppo A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1320699", "pmid": "42088498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "16S sequencing of infant stool Metagenome"}]}, "seppo ae": {"display": "Seppo AE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1290379", "pmid": "41593042", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool"}]}, "sequeira af": {"display": "Sequeira AF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "sequino g": {"display": "Sequino G", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}, {"acc": "PRJNA997801", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "serapio-palacios a": {"display": "Serapio-Palacios A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA838575", "pmid": "40623174", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "sereewit j": {"display": "Sereewit J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1066815", "pmid": "38963827", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human rhinovirus A, B and C in Washington State"}, {"acc": "PRJNA723895", "pmid": "38963827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Rhinovirus NGS"}, {"acc": "PRJNA907066", "pmid": "36878012", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human respiratory syncytial virus Genome sequencing"}]}, "sereika m": {"display": "Sereika M", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB48021", "pmid": "35789207", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of anaerobic digester at Fredericia WWTP with short and long read s…"}, {"acc": "PRJEB48692", "pmid": "35789207", "pos": "first", "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Sequenced reads for ZymoBIOMICS HMW DNA Standard, including reads from Illumina, Nanopore…"}, {"acc": "PRJEB50688", "pmid": "35972375", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sequencing read data for Danish soil samples"}, {"acc": "PRJEB52550", "pmid": "36697964", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of samples suspected of featuring cable bacteria genomic DNA with s…"}, {"acc": "PRJEB58634", "pmid": "40707831", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencin…"}]}, "serena g": {"display": "Serena G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "sereti i": {"display": "Sereti I", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1369410", "pmid": "42242497", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics sequencing from patients with CD4 lymphopenia"}, {"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "sergi cm": {"display": "Sergi CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "serinaldi d": {"display": "Serinaldi D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27932649", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "serlie mj": {"display": "Serlie MJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "seroogy cm": {"display": "Seroogy CM", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46659", "pmid": "35932762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJNA1078287", "pmid": "39425237", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Infant Upper Respiratory Microbiome"}, {"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}]}, "serpa ph": {"display": "Serpa PH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "serrano d": {"display": "Serrano D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "serrano mg": {"display": "Serrano MG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA876771", "pmid": "36975801", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Vaginal microbiome metagenome inference accuracy: differential measurement error accordin…"}]}, "serrano-gomez g": {"display": "Serrano-Gómez G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1171764", "pmid": "40524271", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut metagenome of IBD patients and healthy controls"}, {"acc": "PRJNA851554", "pmid": "34938418", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomes of the gut microbiota of CD patients that required resection from a Belgian c…"}]}, "serrano-vazquez a": {"display": "Serrano-Vázquez A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1258733", "pmid": "42127418", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Metagenome"}, {"acc": "PRJNA592261", "pmid": "32788688", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "35196791", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "36650178", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}]}, "serrano-villar s": {"display": "Serrano-Villar S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB5185", "pmid": "25407519", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysfunctional gut microbiota drives chronic immune activation in HIV-treated individuals"}, {"acc": "PRJEB75958", "pmid": "33602945", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "sertour n": {"display": "Sertour N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "servais c": {"display": "Servais C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1140720", "pmid": "41565819", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Modelling human microbiome transmission in a nursery setting"}]}, "servellita v": {"display": "Servellita V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA916952", "pmid": "36758519", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Stanford's Outcomes Research in Kids (STORK) Virome"}]}, "setaro m": {"display": "Setaro M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675110", "pmid": "33659220", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiome signature in COVID-19 positive patients"}]}, "setchell kdr": {"display": "Setchell KDR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA870588", "pmid": "36843227", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic of preterm infants with cholestasis"}]}, "seth-smith hmb": {"display": "Seth-Smith HMB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35490", "pmid": "32187006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tick-Borne Relapsing Fever caused by Borrelia persica in a Traveler returning from Centra…"}]}, "settanni cr": {"display": "Settanni CR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA643802", "pmid": "32859933", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "FMT for diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal…"}]}, "setubal jc": {"display": "Setubal JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "severgnini m": {"display": "Severgnini M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA278393", "pmid": "25981789", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA525982", "pmid": "30948795", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transpl…"}, {"acc": "PRJNA615842", "pmid": "33494335", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}]}, "severi m": {"display": "Severi M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976261", "pmid": "31153098", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole metagenomic shotgun sequencing of the subgingival microbiome of diabetics and non-d…"}, {"acc": "PRJNA976261", "pmid": "37257865", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole metagenomic shotgun sequencing of the subgingival microbiome of diabetics and non-d…"}]}, "severyn cj": {"display": "Severyn CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA787952", "pmid": "35239511", "pos": "first", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": "first", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}]}, "sevuk ozumut s": {"display": "Sevuk Ozumut S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26810", "pmid": "34071061", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}, {"acc": "PRJEB26810", "pmid": "38257101", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}]}, "sew hoy c": {"display": "Sew Hoy C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1222487", "pmid": "42293161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome signatures and reduced Faecalibacterium and Roseburia in infants with earl…"}]}, "sewall jm": {"display": "Sewall JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA647720", "pmid": "33727392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiome sequencing during a high fiber diet intervention"}]}, "sexton dj": {"display": "Sexton DJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}]}, "seyedmousavi a": {"display": "Seyedmousavi A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156457", "pmid": "39731681", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Acanthamoeba sequencing"}]}, "seymour s": {"display": "Seymour S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA678472", "pmid": "34407825", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Long-term persistence of crAss-like phage crAss001 in Bacteroides intestinalis cultures i…"}]}, "sezer ob": {"display": "Sezer OB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "sezerman u": {"display": "Sezerman U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1168703", "pmid": "38485093", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of an epilepsy-linked gut microbiota signature in a pediatric rat model of…"}]}, "sfanos ks": {"display": "Sfanos KS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA793907", "pmid": "35908379", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial 16S rRNA gene sequences from fecal samples of prostate cancer patients treated…"}]}, "sformo tl": {"display": "Sformo TL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "sha m": {"display": "Sha M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1052964", "pmid": "40860434", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}]}, "sha w": {"display": "Sha W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA349463", "pmid": "28915922", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Urban vs. Rural China Microbiome"}]}, "shaaban r": {"display": "Shaaban R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA379120", "pmid": "39739091", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA595749", "pmid": "39739091", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}]}, "shadaloey sa": {"display": "Shadaloey SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}]}, "shade a": {"display": "Shade A", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA231909", "pmid": "30710083", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA492298", "pmid": "31146755", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Surface soil microbial communities from active vent of coal mine fire in Centralia Pennsy…"}, {"acc": "PRJNA660443", "pmid": "34785751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the human gut during enteric infection"}]}, "shaffer m": {"display": "Shaffer M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961698", "pmid": "37610205", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Very Early Life Microbiome and Metabolome Correlates with Primary Vaccination Variability…"}]}, "shafquat a": {"display": "Shafquat A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA398089", "pmid": "35614211", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}]}, "shah dp": {"display": "Shah DP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1224818", "pmid": "38361816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with n…"}]}, "shah ma": {"display": "Shah MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA297869", "pmid": "26614063", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human gastric microbiome metagenome"}]}, "shah nj": {"display": "Shah NJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA946744", "pmid": "39666007", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Homo sapiens metagenomic sequences"}]}, "shah nn": {"display": "Shah NN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}]}, "shah ps": {"display": "Shah PS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "shah rr": {"display": "Shah RR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}, {"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "shah s": {"display": "Shah S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1200893", "pmid": "41809988", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}]}, "shah sa": {"display": "Shah SA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB46943", "pmid": "35181661", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "37037943", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40108202", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40396485", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "41387423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA715601", "pmid": "38730321", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "40108202", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}]}, "shah ss": {"display": "Shah SS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "shah ym": {"display": "Shah YM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "shah-gandhi b": {"display": "Shah-Gandhi B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA899808", "pmid": "36543914", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Role of the gut microbiome in lung fibrosis"}]}, "shaheed a": {"display": "Shaheed A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "shaiber a": {"display": "Shaiber A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701961", "pmid": "37069665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA701961", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "shaikh ka": {"display": "Shaikh KA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "shaikh n": {"display": "Shaikh N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1148144", "pmid": "40128855", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Biosignatures of late-onset extraintestinal bacterial infections"}]}, "shakhsheer b": {"display": "Shakhsheer B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14474", "pmid": "28539477", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}]}, "shalon n": {"display": "Shalon N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884103", "pmid": "37134153", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}]}, "shamash m": {"display": "Shamash M", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB46943", "pmid": "42315844", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA284162", "pmid": "42315844", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "STL Infant Twins Microbiome"}, {"acc": "PRJNA385126", "pmid": "42315844", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA387903", "pmid": "42315844", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Intestinal Virome Changes Precede Autoimmunity in Type I Diabetes Susceptible Children"}, {"acc": "PRJNA524703", "pmid": "42315844", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA641593", "pmid": "42315844", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Characterizing the gut DNA and RNA viromes in a population of Chinese residents and visit…"}, {"acc": "PRJNA693793", "pmid": "42315844", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "BaBel Infant Gut Virome Raw Data"}, {"acc": "PRJNA916952", "pmid": "42315844", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Stanford's Outcomes Research in Kids (STORK) Virome"}]}, "shan f": {"display": "Shan F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "shan t": {"display": "Shan T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA994670", "pmid": "39242698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial community characterization and molecular resistance monitoring in geriatric int…"}]}, "shan x": {"display": "Shan X", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB28401", "pmid": "37261381", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenome investigation of ocular microbiota of cataract patients with and without type…"}, {"acc": "PRJNA1107349", "pmid": "38980166", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Polysaccharide degradation by microbial communities"}]}, "shanahan f": {"display": "Shanahan F", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB42304", "pmid": "31843589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differences in Fecal Microbiomes and Metabolomes of People With vs Without Irritable Bowe…"}, {"acc": "PRJEB48251", "pmid": "37230981", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJNA300541", "pmid": "37118093", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "shandling ad": {"display": "Shandling AD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1320699", "pmid": "42088498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "16S sequencing of infant stool Metagenome"}]}, "shang j": {"display": "Shang J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA524703", "pmid": "36659812", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA946744", "pmid": "39666007", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Homo sapiens metagenomic sequences"}]}, "shankar rr": {"display": "Shankar RR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1066815", "pmid": "38963827", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human rhinovirus A, B and C in Washington State"}, {"acc": "PRJNA723895", "pmid": "38963827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Rhinovirus NGS"}]}, "shanmuganathan m": {"display": "Shanmuganathan M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991269", "pmid": "38589361", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "shannon km": {"display": "Shannon KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB17694", "pmid": "27912057", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Di…"}]}, "shao y": {"display": "Shao Y", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}, {"acc": "PRJEB32631", "pmid": "31534227", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "36456554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "39242817", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "42032281", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB47909", "pmid": "42032281", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "FMT datasets of patients with recurrent Clostridioides difficile infection (rCDI), inflam…"}, {"acc": "PRJEB6456", "pmid": "39242817", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA400115", "pmid": "39242817", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}, {"acc": "PRJNA806984", "pmid": "39242817", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}, {"acc": "PRJNA994433", "pmid": "39242817", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Variability of Bifidobacterium Species in the Infant Gut is Independent of M…"}]}, "shao z": {"display": "Shao Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB28401", "pmid": "37261381", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenome investigation of ocular microbiota of cataract patients with and without type…"}]}, "shapiama lopez wv": {"display": "Shapiama Lopez WV", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA834762", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA834762", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing"}, {"acc": "PRJNA837236", "pmid": "36194603", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}, {"acc": "PRJNA837236", "pmid": "36251729", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Meta…"}]}, "shapira r": {"display": "Shapira R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA598014", "pmid": "34454634", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Broiler Chicken Cloacal and Litter Meta-genomic Samples"}]}, "shapiro b": {"display": "Shapiro B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41240", "pmid": "33434506", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Heterogeneous hunter-gatherer and steppe-related ancestries in Late Neolithic and Bell Be…"}]}, "shapiro jt": {"display": "Shapiro JT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA789782", "pmid": "34970712", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of bat coronaviruses from Eswatini"}]}, "sharma p": {"display": "Sharma P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "sharma r": {"display": "Sharma R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA986135", "pmid": "37469596", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "UTI microbiome"}, {"acc": "PRJNA995059", "pmid": "36825940", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Respiratory Microbiome"}]}, "sharon i": {"display": "Sharon I", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA215102", "pmid": "24451181", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant gut Metagenome"}, {"acc": "PRJNA221723", "pmid": "24468033", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA321218", "pmid": "24137540", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "sharp c": {"display": "Sharp C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA377096", "pmid": "31530813", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soda lake innocuated bioreactors"}]}, "sharp ce": {"display": "Sharp CE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA377096", "pmid": "28367229", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soda lake innocuated bioreactors"}]}, "sharp k": {"display": "Sharp K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657818", "pmid": "33377127", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}]}, "sharpton tj": {"display": "Sharpton TJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA747032", "pmid": "34636674", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of library preparation on metagenomic profiles"}]}, "shastri gg": {"display": "Shastri GG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB17694", "pmid": "27912057", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Di…"}]}, "shaw ag": {"display": "Shaw AG", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB15257", "pmid": "28149696", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB15257", "pmid": "34362295", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJNA1191223", "pmid": "40813371", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of early life antibiotic and probiotic treatment on gut microbiome and resistome o…"}, {"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "shaw ca": {"display": "Shaw CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA390646", "pmid": "29242832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}]}, "shaw g": {"display": "Shaw G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA288562", "pmid": "26283357", "pos": null, "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}]}, "shaw j": {"display": "Shaw J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27927929", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "shaw lp": {"display": "Shaw LP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "34609275", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "shaw sy": {"display": "Shaw SY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA559861", "pmid": "32544460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cholesterol Metabolism by Uncultured Human Gut Bacteria Influences Host Cholesterol Level."}]}, "shawon j": {"display": "Shawon J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "she j": {"display": "She J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA905328", "pmid": "37904586", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut microbes sequencing"}]}, "she jx": {"display": "She JX", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA268964", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA392180", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA485056", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA497734", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "shean rc": {"display": "Shean RC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28209840", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28254976", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28838146", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29970463", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30674273", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "sheedy a": {"display": "Sheedy A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB72531", "pmid": "38424099", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prebiotic intervention for muscle function and cognition"}]}, "sheik ar": {"display": "Sheik AR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "26505828", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "shek lp": {"display": "Shek LP", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA272371", "pmid": "29049378", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}]}, "shek lpc": {"display": "Shek LPC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "shelburne sa": {"display": "Shelburne SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "shelley g": {"display": "Shelley G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA630822", "pmid": "34732568", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA630822", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}]}, "shemesh oa": {"display": "Shemesh OA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1187541", "pmid": "39753133", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Raw metagenomics sequencing from human hippocampi."}]}, "shen d": {"display": "Shen D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "shen e": {"display": "Shen E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "shen j": {"display": "Shen J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA631602", "pmid": "32578861", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Rumen metagenome of Hu sheep fed urea"}]}, "shen n": {"display": "Shen N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}]}, "shen p": {"display": "Shen P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA924947", "pmid": "38651859", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}]}, "shen q": {"display": "Shen Q", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1005597", "pmid": "37896845", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "feces metagenome Metagenome"}, {"acc": "PRJNA994670", "pmid": "39242698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial community characterization and molecular resistance monitoring in geriatric int…"}]}, "shen s": {"display": "Shen S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1106097", "pmid": "41411653", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Leuconostoc citreum enhances the colonization ability of Lactiplantibacillus plantarum in…"}, {"acc": "PRJNA1151839", "pmid": "39663251", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Salivary microbiome in burning mouth syndrome"}]}, "shen t": {"display": "Shen T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA810575", "pmid": "36419187", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes of maternal and infant faecal samples"}]}, "shen w": {"display": "Shen W", "group": false, "n_studies": 17, "studies": [{"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "shen x": {"display": "Shen X", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA356809", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "the gut metagenome of ginat pandas , bears and carnivores Raw sequence reads"}, {"acc": "PRJNA358755", "pmid": "35568757", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "wild and captive gut Raw sequence reads"}, {"acc": "PRJNA774076", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Gut metagenome of bamboo rats"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "shen y": {"display": "Shen Y", "group": false, "n_studies": 6, "studies": [{"acc": "PRJDB28434", "pmid": "37979711", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Macrogenomic data of mice (PRJCA016720)"}, {"acc": "PRJNA356809", "pmid": "35568757", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "the gut metagenome of ginat pandas , bears and carnivores Raw sequence reads"}, {"acc": "PRJNA358755", "pmid": "35568757", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "wild and captive gut Raw sequence reads"}, {"acc": "PRJNA774076", "pmid": "35568757", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Gut metagenome of bamboo rats"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}, {"acc": "PRJNA950577", "pmid": "37306468", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "shen z": {"display": "Shen Z", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}, {"acc": "PRJNA46333", "pmid": "37946302", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "sheng jq": {"display": "Sheng JQ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504921", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA506811", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "HUMAN GUT RECTAL BACTERIA Metagenome"}]}, "sheng wh": {"display": "Sheng WH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA704313", "pmid": "34835435", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating sepsis with culture-Independent mNGS"}]}, "shenhav l": {"display": "Shenhav L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21259", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}]}, "shennon i": {"display": "Shennon I", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "sheppard sk": {"display": "Sheppard SK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912682", "pmid": "38272215", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "39727415", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}]}, "sher a": {"display": "Sher A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445968", "pmid": "28883399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}]}, "sherchand jb": {"display": "Sherchand JB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49206", "pmid": "30439937", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}]}, "sherlock m": {"display": "Sherlock M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1273078", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Noma oral microbiome raw sequence reads"}]}, "sherman pm": {"display": "Sherman PM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "sherrill-mix s": {"display": "Sherrill-Mix S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA451186", "pmid": "30376898", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Placenta Microbiome"}]}, "sherrod sd": {"display": "Sherrod SD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA986525", "pmid": "38441000", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "2'-fucoysllactose treatment of C57BL/6 adult mice fecal metagenomics"}]}, "shetty s": {"display": "Shetty S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47581", "pmid": "32423128", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic Analysis of Regularly Microwave-Treated and Untreated Domestic Kitchen Sponges"}]}, "shevlyakova m": {"display": "Shevlyakova M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42539", "pmid": "34756056", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "FUT2/FUT3 genes sequences and nasopharyngeal shotgun metagenomics from the Microbiota and…"}]}, "shi c": {"display": "Shi C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA693793", "pmid": "35320047", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BaBel Infant Gut Virome Raw Data"}, {"acc": "PRJNA705894", "pmid": "33883261", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenomics of Belgian mosquitoes"}, {"acc": "PRJNA876377", "pmid": "37007478", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soil microbiome of grassland bulk soil Metagenome"}]}, "shi k": {"display": "Shi K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA290380", "pmid": "41796297", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA436359", "pmid": "41796297", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbial factors implicated in disease progression and treatment response in pediatr…"}]}, "shi l": {"display": "Shi L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA775062", "pmid": "42326398", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Landscapes of bacterial, viral and metabolic signatures and their interaction in early-we…"}, {"acc": "PRJNA847006", "pmid": "42326398", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}]}, "shi m": {"display": "Shi M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA841246", "pmid": "35765950", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Feline panleukopenia and healthy control feline faecal samples"}]}, "shi q": {"display": "Shi Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27308", "pmid": "30974084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome metagenome analysis of stool samples from individuals with low and high saliva…"}]}, "shi s": {"display": "Shi S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}, {"acc": "PRJNA715658", "pmid": "40266232", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Genome-resolved metagenomics of the chicken gut microbiome"}, {"acc": "PRJNA735411", "pmid": "40266232", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Microbial Ecology of sea lion gut microbiome at Comau Fjord, Northern Patagonia (42 S). R…"}]}, "shi w": {"display": "Shi W", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}, {"acc": "PRJNA398963", "pmid": "30522530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "oral bacterial species growing in a complex biofilm Raw sequence reads"}, {"acc": "PRJNA525517", "pmid": "30975748", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Klebsiella and Providencia notch a tag-team victory in a battle royale of oral bacteria"}]}, "shi x": {"display": "Shi X", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1065277", "pmid": "39268487", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal factors are more capable of influencing the structure of infant gut microbes and…"}, {"acc": "PRJNA1151839", "pmid": "39663251", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Salivary microbiome in burning mouth syndrome"}, {"acc": "PRJNA858926", "pmid": "37771701", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}, {"acc": "PRJNA973819", "pmid": "38188910", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Pathogenetic characterization of a Micrococcus luteus strain isolated from an infant"}]}, "shi y": {"display": "Shi Y", "group": false, "n_studies": 3, "studies": [{"acc": "PRJDB38192", "pmid": "37674580", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Utility of clinical metagenomics in diagnosing malignancies in a cohort of patients with…"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}, {"acc": "PRJNA905328", "pmid": "37904586", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut microbes sequencing"}]}, "shi z": {"display": "Shi Z", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB14607", "pmid": "25721383", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "By taking three metagenomic approaches to reveal the microplankton communities from compo…"}, {"acc": "PRJEB26795", "pmid": "30609941", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJNA475246", "pmid": "38486699", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "shiba s": {"display": "Shiba S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "shibata s": {"display": "Shibata S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "shibata t": {"display": "Shibata T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "shields md": {"display": "Shields MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1080233", "pmid": "39214237", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Breathing Together severe wheeze and asthma cohort"}]}, "shigeno y": {"display": "Shigeno Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "shin h": {"display": "Shin H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA506137", "pmid": "29858829", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "wastewater Metagenome"}]}, "shin j": {"display": "Shin J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}]}, "shinde t": {"display": "Shinde T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB77729", "pmid": "39714161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "First-Year Dynamics of the Microbiome in Infants’ Oral and Gastrointestinal Systems"}]}, "shindo m": {"display": "Shindo M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "shinoda ki": {"display": "Shinoda KI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15334", "pmid": "32994538", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Radcliffe dental calculus"}]}, "shinzaki s": {"display": "Shinzaki S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "shiroma h": {"display": "Shiroma H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "shishido tk": {"display": "Shishido TK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59350", "pmid": "39143178", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "deep shotgun DNA sequencing of 136 patient’s fecal samples (Parkinson vs Control)"}, {"acc": "PRJEB59350", "pmid": "40258842", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "deep shotgun DNA sequencing of 136 patient’s fecal samples (Parkinson vs Control)"}]}, "shishlina n": {"display": "Shishlina N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "shisler jl": {"display": "Shisler JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1148079", "pmid": "39756219", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "NGS metagenomic libraries with or without CRISPR-Cas9 modification for ARG enrichment"}]}, "shitara k": {"display": "Shitara K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "shklar s": {"display": "Shklar S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA628604", "pmid": "32511695", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}]}, "shkoporov an": {"display": "Shkoporov AN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA678472", "pmid": "34407825", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Long-term persistence of crAss-like phage crAss001 in Bacteroides intestinalis cultures i…"}]}, "shliaha pv": {"display": "Shliaha PV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}]}, "shmorak s": {"display": "Shmorak S", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB32631", "pmid": "38291346", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "38291346", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1312123", "pmid": "41203618", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Development of the preterm infant gut and gastric residuals microbiome"}, {"acc": "PRJNA352475", "pmid": "38291346", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA475246", "pmid": "38291346", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA497734", "pmid": "38291346", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA994433", "pmid": "38291346", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Variability of Bifidobacterium Species in the Infant Gut is Independent of M…"}]}, "shnaider k": {"display": "Shnaider K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA949528", "pmid": "37308527", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}]}, "shoaie s": {"display": "Shoaie S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1307628", "pmid": "41461922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbial oral-gut translocation in advanced chronic liver disease is linked to exacerbat…"}]}, "shoer s": {"display": "Shoer S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": null, "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "shogan bd": {"display": "Shogan BD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14474", "pmid": "28539477", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}]}, "shono y": {"display": "Shono Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "shoptaw s": {"display": "Shoptaw S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA836336", "pmid": "36179550", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenome of MSM prior to and following HIV seroconversion"}]}, "shpall ej": {"display": "Shpall EJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "shreffler wg": {"display": "Shreffler WG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1445880", "pmid": "42010622", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome samples Gastrointestinal Microbiome and Allergic Proctocolitis coho…"}]}, "shrestha r": {"display": "Shrestha R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019500", "pmid": null, "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}]}, "shu ch": {"display": "Shu CH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "shu cj": {"display": "Shu CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078280", "pmid": "38405928", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Quantifying forms and functions of intestinal bile acid pools in mice"}]}, "shukla r": {"display": "Shukla R", "group": false, "n_studies": 10, "studies": [{"acc": "PRJEB14964", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Maternal Secretor Status and Microbiota Composition"}, {"acc": "PRJEB27914", "pmid": "41751912", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Six-week endurance exercise alters gut metagenome that is not reflected in systemic metab…"}, {"acc": "PRJEB29078", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA307231", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA32089", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}, {"acc": "PRJNA322188", "pmid": "41751912", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA445932", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA541981", "pmid": "41751912", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome in melanoma patients"}, {"acc": "PRJNA565546", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "fecal sample Raw sequence reads"}, {"acc": "PRJNA763023", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Dysbiosis of human gut microbiome in young-onset colorectal cancer"}]}, "shukla sd": {"display": "Shukla SD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA562766", "pmid": "33208745", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}]}, "shungin d": {"display": "Shungin D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA559861", "pmid": "32544460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cholesterol Metabolism by Uncultured Human Gut Bacteria Influences Host Cholesterol Level."}]}, "si h": {"display": "Si H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}, {"acc": "PRJNA779578", "pmid": "36503572", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Cervus nippon Raw sequence reads"}]}, "si n": {"display": "Si N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA936938", "pmid": "36992458", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "searching for viruses in Asiatic toad Raw sequence reads"}]}, "sia cm": {"display": "Sia CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "sicheritz-ponten t": {"display": "Sicheritz-Ponten T", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12466", "pmid": "26161690", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Meta-genomic analysis of toilet waste from long distance flights"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "sichert a": {"display": "Sichert A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1107349", "pmid": "38980166", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Polysaccharide degradation by microbial communities"}]}, "siciliano sd": {"display": "Siciliano SD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "siddiqui mm": {"display": "Siddiqui MM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "siddiqui s": {"display": "Siddiqui S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "siddle kj": {"display": "Siddle KJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "sidebottom am": {"display": "Sidebottom AM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB102033", "pmid": "41330369", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lantibiotic-producing bacteria impact microbiome resilience and colonization resistance"}, {"acc": "PRJNA504891", "pmid": "41118772", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "sidore c": {"display": "Sidore C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "siebert n": {"display": "Siebert N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}]}, "siegel j": {"display": "Siegel J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14474", "pmid": "28539477", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}]}, "siegwald l": {"display": "Siegwald L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42539", "pmid": "34756056", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "FUT2/FUT3 genes sequences and nasopharyngeal shotgun metagenomics from the Microbiota and…"}]}, "siems c": {"display": "Siems C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA484151", "pmid": "31379808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural and Urban infant''s fecal microbiota study"}]}, "siewe fodjo jn": {"display": "Siewe Fodjo JN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1088476", "pmid": "40321713", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Cameroonian blackflies (Diptera: Simuliidae) harbour a plethora of (RNA) viruses"}]}, "signoretto c": {"display": "Signoretto C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB67641", "pmid": "38709303", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental Plaque Microbiota Sequence Counts for Microbial Profiling and Resistance Genes Det…"}]}, "sikkema j": {"display": "Sikkema J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "sikora m": {"display": "Sikora M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}, {"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}, {"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}, {"acc": "PRJNA246597", "pmid": "24809476", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "silamikelis i": {"display": "Silamikelis I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62817", "pmid": "38868903", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome encoded purine and amino acid pathways present prospective biomarkers for…"}]}, "silas s": {"display": "Silas S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA605028", "pmid": "32690954", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Genome sequencing and assembly"}]}, "silber jl": {"display": "Silber JL", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1121316", "pmid": "37060545", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}, {"acc": "PRJNA1121316", "pmid": "39747680", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CONSORTIUM VE303 phase 2 study stool metagenomes"}, {"acc": "PRJNA1463324", "pmid": "41342324", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "VE202 phase 1 stool metagenomes"}, {"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "silbereisen a": {"display": "Silbereisen A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37731", "pmid": "42203854", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB38528", "pmid": "42203854", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}]}, "silberger dj": {"display": "Silberger DJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542320", "pmid": "31700190", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacteria Genome sequencing and assembly"}]}, "siliceo sl": {"display": "Siliceo SL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}, {"acc": "PRJNA728908", "pmid": "35675435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of baseline individuals in a 4.6-year non-alcoholic fatty liver disease pr…"}]}, "silins r": {"display": "Silins R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}]}, "siljander h": {"display": "Siljander H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA475246", "pmid": "35685890", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "siller b": {"display": "Siller B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "silva a": {"display": "Silva A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "silva cn": {"display": "Silva CN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "silva d": {"display": "Silva D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1452547", "pmid": "42129350", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chlorinated Water Effects on Infant Gut Microbiota"}]}, "silva delgado h": {"display": "Silva Delgado H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912682", "pmid": "38272215", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}, {"acc": "PRJNA912682", "pmid": "39727415", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Epidemiology and impact of emerging Campylobacter species isolated from humans and animal…"}]}, "silva jvd": {"display": "Silva JVD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA987743", "pmid": "39695297", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Ruminal and Fecal Microbiomes of Brazilian Nelore Cattle"}]}, "silva lj": {"display": "Silva LJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29861", "pmid": "31550653", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "UNVEILING RESISTOME PROFILES IN THE SEDIMENTS OF AN ANTARCTIC VOLCANIC ISLAND"}]}, "silva m": {"display": "Silva M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701961", "pmid": "37069665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA701961", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "silva miranda m": {"display": "Silva Miranda M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "silva phf": {"display": "Silva PHF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA846723", "pmid": "39527605", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of oral administration of Bifidobacterium animalis subsp. lactis HN019 on the tre…"}]}, "silva rc": {"display": "Silva RC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA60545", "pmid": "24706600", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes isolated from NE Brazil"}]}, "silverman j": {"display": "Silverman J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29169", "pmid": "31222023", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Establishing microbial composition measurement standards with reference frames"}]}, "silverman jd": {"display": "Silverman JD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA667736", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Milk Metagenome Anomaly Detection Project"}]}, "silverman ma": {"display": "Silverman MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "silverstein s": {"display": "Silverstein S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA787952", "pmid": "35239511", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}]}, "silvester r": {"display": "Silvester R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1235110", "pmid": "39798461", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome"}]}, "sim em": {"display": "Sim EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "sim k": {"display": "Sim K", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB15257", "pmid": "28149696", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB15257", "pmid": "34362295", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJNA1191223", "pmid": "40813371", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of early life antibiotic and probiotic treatment on gut microbiome and resistome o…"}, {"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "simar sr": {"display": "Simar SR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1195144", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "simard jl": {"display": "Simard JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "simmons a": {"display": "Simmons A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "simon c": {"display": "Simon C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB48663", "pmid": "35311446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Increasing the diversity of dietary fibres in a daily-consumed bread modifies gut microbi…"}, {"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "simon j": {"display": "Simon J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}, {"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "simon ma": {"display": "Simón MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA158313", "pmid": "23251564", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Iberian lynx fecal Metagenome"}]}, "simon ml": {"display": "Simon ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657304", "pmid": "33542301", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun Sequencing of Dog Coprolites"}]}, "simon rh": {"display": "Simon RH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA530252", "pmid": "32631930", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effect of cycled, inhaled tobramycin on the sputum microbiome in cystic fibrosis"}]}, "simonelli a": {"display": "Simonelli A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976261", "pmid": "37257865", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole metagenomic shotgun sequencing of the subgingival microbiome of diabetics and non-d…"}]}, "simons e": {"display": "Simons E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "37644001", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "40623174", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "42337243", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "simons mjp": {"display": "Simons MJP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "simons mp": {"display": "Simons MP", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA698223", "pmid": "36470885", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "TD Cusco travelers study"}, {"acc": "PRJNA945408", "pmid": "38085102", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prev…"}]}, "simpson n": {"display": "Simpson N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB32631", "pmid": "31534227", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}]}, "simren m": {"display": "Simrén M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB34992", "pmid": "33771219", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet and gut microbiome interactions of relevance for symptoms in irritable bowel syndrome"}]}, "sims na": {"display": "Sims NA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819194", "pmid": "35606844", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "KRuMBS: Kyphosid Ruminant Microbial Biodigestor of Seaweeds"}]}, "sims t": {"display": "Sims T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "simsek c": {"display": "Simsek C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA804384", "pmid": "37052201", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Inflammatory bowel disease patients undergoing biological therapy"}]}, "simuyandi m": {"display": "Simuyandi M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "41986657", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "sindhu knc": {"display": "Sindhu KNC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62041", "pmid": "37980461", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rotavirus Vaccine Immunogenicity (RoVI) shotgun metagenomics"}]}, "sindhuja rh": {"display": "Sindhuja RH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "sindi as": {"display": "Sindi AS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819247", "pmid": "36060782", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome Raw sequence reads"}]}, "singa b": {"display": "Singa B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "singer d": {"display": "Singer D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB25144", "pmid": "25874666", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Temporal patterns of soil micro-eukaryotic diversity beneath decomposing pig cadavers as…"}]}, "singer jr": {"display": "Singer JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542320", "pmid": "31700190", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacteria Genome sequencing and assembly"}]}, "singh a": {"display": "Singh A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA278302", "pmid": "26787827", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Alaska oil reservoir Metagenome"}, {"acc": "PRJNA995059", "pmid": "36825940", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Respiratory Microbiome"}]}, "singh n": {"display": "Singh N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "32351922", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "33553097", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "41185061", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "singh nk": {"display": "Singh NK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "singh p": {"display": "Singh P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "singh pk": {"display": "Singh PK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA860728", "pmid": "36121157", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "GenCap-Seq Selectively Enriches Bacterial DNA and Enables Genome-wide Measurement of Intr…"}]}, "singh r": {"display": "Singh R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46779", "pmid": "29566738", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Extended-Spectrum Beta Lactamase Carriers."}]}, "singh s": {"display": "Singh S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}]}, "singh v": {"display": "Singh V", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "singha b": {"display": "Singha B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "singleton cm": {"display": "Singleton CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58634", "pmid": "40707831", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencin…"}]}, "sinha p": {"display": "Sinha P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "sinha r": {"display": "Sinha R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}]}, "sinha t": {"display": "Sinha T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "sinioja t": {"display": "Sinioja T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}]}, "sinn m": {"display": "Sinn M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "sinninghe damste js": {"display": "Sinninghe Damsté JS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4261", "pmid": "21593795", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of two depths of the Arabian sea oxygen minimum zone using SOLiD a…"}]}, "sintchenko v": {"display": "Sintchenko V", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}, {"acc": "PRJNA595393", "pmid": "32108565", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Optimisation of sample preparation for culture-independent sequencing of Bordetella pertu…"}, {"acc": "PRJNA633948", "pmid": "35263515", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}]}, "siracusa c": {"display": "Siracusa C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1015704", "pmid": "40042126", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal and oropharyngeal microbiota from infants with cystic fibrosis on and off beta-lact…"}]}, "siranosian ba": {"display": "Siranosian BA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA787952", "pmid": "35239511", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}]}, "sirmans e": {"display": "Sirmans E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "siry c": {"display": "Siry C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40662", "pmid": "34675897", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Deep (Meta)genomics and (Meta)transcriptome Analyses of Fungal and Bacteria Consortia Fro…"}]}, "sitarik ar": {"display": "Sitarik AR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52295", "pmid": "38117587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Precocious infant gut microbiome reprograms enterocytes and promotes childhood obesity ri…"}]}, "sitter tl": {"display": "Sitter TL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "sitterle l": {"display": "Sitterle L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "sittig-wiegand e": {"display": "Sittig-Wiegand E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA381395", "pmid": "28843021", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut and nasal microbiome in Parkinson''s disease"}]}, "sittler t": {"display": "Sittler T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "20976137", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "siva ab": {"display": "Siva AB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "sivalingam v": {"display": "Sivalingam V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "sivapornnukul p": {"display": "Sivapornnukul P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1115039", "pmid": "39673707", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary selective effects manifest in the human gut microbiota from species composition t…"}]}, "siveke jt": {"display": "Siveke JT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "sixel-doring f": {"display": "Sixel-Döring F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA381395", "pmid": "28843021", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut and nasal microbiome in Parkinson''s disease"}]}, "siyabu p": {"display": "Siyabu P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63570", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Klebsiella_transmission_and_immunity_on_Chatinkha_nursery__Neo_TRACK_"}]}, "sizikov s": {"display": "Sizikov S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA515489", "pmid": "32840024", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genomic collection of symbionts associated with Petrosia ficiformis"}]}, "sjodin a": {"display": "Sjödin A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA795992", "pmid": "35336963", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenome of potential vectors (ticks, mosquitos, etc.)"}]}, "sjogren kg": {"display": "Sjögren KG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "sjoqvist c": {"display": "Sjöqvist C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA379120", "pmid": "30504906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}]}, "skaar ep": {"display": "Skaar EP", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "skalkidou a": {"display": "Skalkidou A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62678", "pmid": "31641004", "pos": "last", "reason_code": null, "src": "B", "status": "human_review", "title_short": "BASIC: Biology, Affect, Stress, Imaging and Cognition in pregnancy"}]}, "skelly an": {"display": "Skelly AN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "skelly e": {"display": "Skelly E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA688065", "pmid": "33811235", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effectiveness of decontamination protocols when analyzing ancient DNA preserved in dental…"}]}, "skirnisdottir s": {"display": "Skírnisdóttir S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "skogberg k": {"display": "Skogberg K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64567", "pmid": "33007265", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Maternal FMT in Cesarean-Born Infants - WGS sequencing of infants (1w to 1year) and mater…"}]}, "skoglund p": {"display": "Skoglund P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9783", "pmid": "26351665", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing Chalcolithic human remains from El Portalón, Spain"}]}, "skonieczna-zydecka k": {"display": "Skonieczna-Żydecka K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "skupin a": {"display": "Skupin A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "skytthe le": {"display": "Skytthe LE", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB6456", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB97976", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome maturation during weaning"}, {"acc": "PRJEB97980", "pmid": "42203770", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential impact of doxycycline treatment on antimicrobial resistance genes in the enteri…"}, {"acc": "PRJEB98012", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Creeping Fat"}, {"acc": "PRJEB98069", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Distinct Microbial and Resistome Signatures Differentiate Healthy and Inflamed Ileal Pouc…"}]}, "slater gf": {"display": "Slater GF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA377096", "pmid": "28367229", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soda lake innocuated bioreactors"}]}, "slifka m": {"display": "Slifka M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA546004", "pmid": "31451108", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Maturation of the infant rhesus macaque (Macaca mulatta) gut microbiome and its role in t…"}]}, "slifka mk": {"display": "Slifka MK", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB5224", "pmid": "38182754", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA729051", "pmid": "34158595", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Growth faltering regardless of chronic diarrhea is associated with mucosal immune dysfunc…"}]}, "slingerland ae": {"display": "Slingerland AE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "slingerland jb": {"display": "Slingerland JB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "sloan wt": {"display": "Sloan WT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8179", "pmid": "25586220", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Synthetic community metagenomes study"}]}, "slomp cp": {"display": "Slomp CP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1215350", "pmid": "40600797", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "16S rRNA sequences of sediment incubations from a eutrophic marine lake"}]}, "slottke re": {"display": "Slottke RE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA793907", "pmid": "35908379", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial 16S rRNA gene sequences from fecal samples of prostate cancer patients treated…"}]}, "slyker j": {"display": "Slyker J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1045584", "pmid": "39185682", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of SARS-CoV-2 in stool sample from women living with HIV and HIV-negative women an…"}, {"acc": "PRJNA635738", "pmid": "33727396", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Breast milk Microbiome/Virome of HIV+ Kenyan Women is Not Altered by Immunosuppression"}]}, "smailus d": {"display": "Smailus D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1092681", "pmid": "38696336", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Validation of an automated, end-to-end metagenomic sequencing assay for agnostic detectio…"}]}, "smarr l": {"display": "Smarr L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}]}, "smidt h": {"display": "Smidt H", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}, {"acc": "PRJEB47581", "pmid": "32423128", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic Analysis of Regularly Microwave-Treated and Untreated Domestic Kitchen Sponges"}, {"acc": "PRJNA237795", "pmid": "35583332", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Swine feces Targeted Locus (Loci)"}]}, "smieja m": {"display": "Smieja M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "smilde ak": {"display": "Smilde AK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB32631", "pmid": "40396737", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}]}, "smilowitz jt": {"display": "Smilowitz JT", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB15633", "pmid": "35406036", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJNA390646", "pmid": "29242832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA390646", "pmid": "31423298", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}]}, "smirnova e": {"display": "Smirnova E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "smit lam": {"display": "Smit LAM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1049329", "pmid": "39315772", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human oropharyngeal resistome of COPD cases and controls using ResCap"}]}, "smith a": {"display": "Smith A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1406675", "pmid": "41901112", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "GEO accession GSE317287 is currently private and is scheduled to be released on Jul 01, 2…"}, {"acc": "PRJNA912638", "pmid": "37213047", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MICROBIOME IN AGING GUT AND BRAIN (MiaGB) STUDY"}]}, "smith ab": {"display": "Smith AB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "smith ak": {"display": "Smith AK", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA725416", "pmid": "33996627", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Emory University African American Vaginal, Oral, and Gut Microbiome in Pregnancy Cohort S…"}, {"acc": "PRJNA747761", "pmid": "37938667", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Atlanta, USA and Maputo, Mozambique Children gut microbiome Metagenome"}]}, "smith b": {"display": "Smith B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": null, "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "smith bj": {"display": "Smith BJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": "35365713", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}, {"acc": "PRJNA737472", "pmid": "39122767", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}, {"acc": "PRJNA737472", "pmid": null, "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "smith d": {"display": "Smith D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14474", "pmid": "28539477", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}]}, "smith dp": {"display": "Smith DP", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA268964", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA392180", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA416160", "pmid": "39856391", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "The Environmental Determinants of Diabetes in the Young (TEDDY) Parent Study"}, {"acc": "PRJNA485056", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA497734", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "smith em": {"display": "Smith EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA812583", "pmid": "36352460", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level metagenomics reveal microbial transfer from donor to infant after fecal micr…"}]}, "smith gl": {"display": "Smith GL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA348754", "pmid": "27939314", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}]}, "smith gp": {"display": "Smith GP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1775", "pmid": "23571589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diagnostic Metagenomics: A Culture-Independent Approach to the Investigation of Bacterial…"}]}, "smith je": {"display": "Smith JE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1062331", "pmid": "38242477", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Pond microbiome spatiotemporal variation"}]}, "smith jg": {"display": "Smith JG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "smith le": {"display": "Smith LE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "smith m": {"display": "Smith M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}]}, "smith mf": {"display": "Smith MF", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1070654", "pmid": "38712930", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Seasonality of Respiratory, Enteric and Urinary Viruses in Wastewater"}, {"acc": "PRJNA1090887", "pmid": "39053521", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human adenovirus outbreak at a university campus monitored by wastewater and clinical sur…"}]}, "smith mi": {"display": "Smith MI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9818", "pmid": "26351661", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The gut DNA viromes of Malawian twins discordant for severe acute undernutrition"}]}, "smith mk": {"display": "Smith MK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA446038", "pmid": "30526683", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}]}, "smith r": {"display": "Smith R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49383", "pmid": "36163498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm Neonatal Stool Metagenomes"}]}, "smith rp": {"display": "Smith RP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "34609275", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "smith w": {"display": "Smith W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "smith-brown p": {"display": "Smith-Brown P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14969", "pmid": "27694811", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dairy and plant based food intakes are associated with altered faecal microbiota in 2 to…"}]}, "smithson c": {"display": "Smithson C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA348754", "pmid": "28885569", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}]}, "smits lp": {"display": "Smits LP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "smits sa": {"display": "Smits SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49206", "pmid": "28839072", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}, {"acc": "PRJEB49206", "pmid": "30118385", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}]}, "smits wk": {"display": "Smits WK", "group": false, "n_studies": 10, "studies": [{"acc": "PRJDB4176", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1690", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB21528", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB22893", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome impacts response to PD-1 immunotherapy in melanoma patients"}, {"acc": "PRJEB27005", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB39223", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB44737", "pmid": "34126062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB44737", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJNA231909", "pmid": "39885121", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "39885121", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA48479", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "smitz n": {"display": "Smitz N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA880624", "pmid": "38742876", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenomics of single Belgian field mosquitoes."}]}, "smole s": {"display": "Smole S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "smrcka v": {"display": "Smrčka V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "smyser cd": {"display": "Smyser CD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA911205", "pmid": "37726348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Psychosocial adversity experienced in utero and early life is associated with variation i…"}]}, "smyser ta": {"display": "Smyser TA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA911205", "pmid": "37726348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Psychosocial adversity experienced in utero and early life is associated with variation i…"}]}, "snelling tj": {"display": "Snelling TJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21624", "pmid": "29491419", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of the rumen of Scottish cattle."}]}, "snipen l": {"display": "Snipen L", "group": false, "n_studies": 38, "studies": [{"acc": "PRJDB4176", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1220", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB19090", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}, {"acc": "PRJEB21528", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB27005", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB29052", "pmid": "37259063", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB32135", "pmid": "37259063", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB5224", "pmid": "37259063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJEB6456", "pmid": "37259063", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB7774", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB9576", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA268964", "pmid": "37259063", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "37259063", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "37259063", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA278393", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA287207", "pmid": "37259063", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA289586", "pmid": "37259063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA294605", "pmid": "37259063", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA299502", "pmid": "37259063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA324672", "pmid": "37259063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA339914", "pmid": "37259063", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA375935", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut Metagenome"}, {"acc": "PRJNA380031", "pmid": "37259063", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}, {"acc": "PRJNA380118", "pmid": "37259063", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA392180", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "37259063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA397112", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA397219", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA401385", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA422434", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA431482", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA438847", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA449784", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA472785", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Gut Microbiome Metagenomic Sequencing"}, {"acc": "PRJNA473126", "pmid": "37259063", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA487636", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "An increased abundance of Clostridiaceae characterizes arthritis in inflammatory bowel di…"}, {"acc": "PRJNA492714", "pmid": "37259063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Impact of High altitude environment of Human oral and gut microbiota"}, {"acc": "PRJNA496479", "pmid": "37259063", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "snow al": {"display": "Snow AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "so y": {"display": "So Y", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB6456", "pmid": "42203770", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB97976", "pmid": "42203770", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome maturation during weaning"}, {"acc": "PRJEB97980", "pmid": "42203770", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential impact of doxycycline treatment on antimicrobial resistance genes in the enteri…"}, {"acc": "PRJEB98012", "pmid": "42203770", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Creeping Fat"}, {"acc": "PRJEB98069", "pmid": "42203770", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Distinct Microbial and Resistome Signatures Differentiate Healthy and Inflamed Ileal Pouc…"}]}, "soares a": {"display": "Soares A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA811790", "pmid": "37816747", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial and viral dispersal along the natural water cycle"}]}, "soares cfa": {"display": "Soares CFA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA847605", "pmid": "36565815", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosa…"}]}, "soares jw": {"display": "Soares JW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893635", "pmid": "36361763", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}, {"acc": "PRJNA893635", "pmid": "37297350", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}]}, "soares ma": {"display": "Soares MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA847605", "pmid": "36565815", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosa…"}]}, "sobhani i": {"display": "Sobhani I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA289586", "pmid": "30747106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}]}, "sobolik eb": {"display": "Sobolik EB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA907066", "pmid": "36878012", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human respiratory syncytial virus Genome sequencing"}]}, "sobral d": {"display": "Sobral D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "35750157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "36131032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "sobrino ac": {"display": "Sobrino AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "soderberg s": {"display": "Söderberg S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "soderborg tk": {"display": "Soderborg TK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1206145", "pmid": "40898384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of the gut microbiome from infants enrolled in a randomized controlled…"}]}, "soe cz": {"display": "Soe CZ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA63661", "pmid": "32436839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "soenjoyo k": {"display": "Soenjoyo K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA327106", "pmid": "28073918", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}]}, "soenjoyo kr": {"display": "Soenjoyo KR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA376566", "pmid": "29925423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}]}, "soenov vi": {"display": "Soenov VI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "soffiati fl": {"display": "Soffiati FL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA847605", "pmid": "36565815", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosa…"}]}, "soffiati m": {"display": "Soffiati M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}]}, "sogin ml": {"display": "Sogin ML", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA296814", "pmid": "30135504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA32089", "pmid": "19043404", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}]}, "sogoba n": {"display": "Sogoba N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "soh sw": {"display": "Soh SW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA16209", "pmid": "16336043", "pos": null, "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of RNA viruses in human feces"}]}, "sohail mr": {"display": "Sohail MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA518922", "pmid": "31577814", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metegenomic sequencing of blood from patients with vector-borne diseases"}]}, "sohn mb": {"display": "Sohn MB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1290379", "pmid": "41593042", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool"}]}, "soiffer rj": {"display": "Soiffer RJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "sokol h": {"display": "Sokol H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB110927", "pmid": "39454892", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Durigast_F_prausnitzii_ICI_gastric_adenocarcinoma"}, {"acc": "PRJEB43454", "pmid": "35151268", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Long-term diosmectite use does not alter the gut microbiota in adults with chronic diarrh…"}]}, "sokolic r": {"display": "Sokolic R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}, {"acc": "PRJNA46333", "pmid": "24170601", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "sokolove j": {"display": "Sokolove J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1420872", "pmid": "41027803", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of gut/stool samples Metagenome"}]}, "sokolovska n": {"display": "Sokolovska N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}]}, "sola e": {"display": "Solà E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}]}, "sola l": {"display": "Sola L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "38047279", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "42039832", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "42039832", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "solanki s": {"display": "Solanki S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "solano-aguilar g": {"display": "Solano-Aguilar G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1406675", "pmid": "41901112", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "GEO accession GSE317287 is currently private and is scheduled to be released on Jul 01, 2…"}]}, "soldatos g": {"display": "Soldatos G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}]}, "sole c": {"display": "Solé C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40200", "pmid": "32941879", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}]}, "soler z": {"display": "Soler Z", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1146994", "pmid": "38556088", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Personal traits, lifestyle decisions, and geography shape our dietary intake and conseque…"}, {"acc": "PRJNA1171764", "pmid": "40524271", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut metagenome of IBD patients and healthy controls"}]}, "solis g": {"display": "Solís G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6972", "pmid": "25491920", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The microbial colonization of the intestine during the first monthsof life constitutes th…"}]}, "solis-rosales c": {"display": "Solís-Rosales C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "solomon gm": {"display": "Solomon GM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177516", "pmid": "40483244", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Changes in Fecal Microbiota in Adults with Cystic Fibrosis with 6 Months of CFTR Modulato…"}]}, "solomon ss": {"display": "Solomon SS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "solway j": {"display": "Solway J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB20527", "pmid": "26627545", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Corticosteroid therapy and airflow obstruction influence the bronchial microbiome, which…"}]}, "solymosi n": {"display": "Solymosi N", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA591315", "pmid": "32366826", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "raw milk metagenome"}, {"acc": "PRJNA644779", "pmid": "33384459", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "yogurt and kefir seed culture sequencing"}, {"acc": "PRJNA685398", "pmid": "36083885", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Honey bee gut microbiome"}]}, "somani j": {"display": "Somani J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "somasekar s": {"display": "Somasekar S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}]}, "somboro am": {"display": "Somboro AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "somm e": {"display": "Somm E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36797", "pmid": "32711187", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The GLP-1R agonist liraglutide limits hepatic lipotoxicity and inflammatory response in m…"}]}, "sommer aj": {"display": "Sommer AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468588", "pmid": "42490468", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome dynamics in a primary sclerosing cholangitis patient treated with vancomyc…"}]}, "sommer moa": {"display": "Sommer MOA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA573821", "pmid": "32919472", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Whole Meta-genome shotgun sequencing of stool samples from human treated with antibiotics"}, {"acc": "PRJNA626477", "pmid": "34002024", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut microbiota Raw sequence reads with and without cancer cachexia"}]}, "son ss": {"display": "Son SS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB102033", "pmid": "41330369", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lantibiotic-producing bacteria impact microbiome resilience and colonization resistance"}]}, "sondergaard hb": {"display": "Søndergaard HB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51635", "pmid": "36604748", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}]}, "sondermann h": {"display": "Sondermann H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49648", "pmid": "39155318", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Neolithic Yersinia pestis infections in humans and a dog"}]}, "sondertoft nb": {"display": "Søndertoft NB", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "sonehara k": {"display": "Sonehara K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "song c": {"display": "Song C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA589343", "pmid": "32912596", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The gut microbiota changes in Chinese children with autism spectrum disorders"}]}, "song d": {"display": "Song D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA390646", "pmid": "42236946", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA633576", "pmid": "42236946", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}]}, "song e": {"display": "Song E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1206145", "pmid": "40898384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of the gut microbiome from infants enrolled in a randomized controlled…"}]}, "song f": {"display": "Song F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1024085", "pmid": "38423525", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut microbiota facilitate adaptation of invasive moths to new host plants"}]}, "song j": {"display": "Song J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB38192", "pmid": "37674580", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Utility of clinical metagenomics in diagnosing malignancies in a cohort of patients with…"}]}, "song l": {"display": "Song L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698986", "pmid": "37973815", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}]}, "song sj": {"display": "Song SJ", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}, {"acc": "PRJEB52147", "pmid": "35440708", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Association Between Milk Feedings in the Preterm Population, the Microbiome and Risk…"}, {"acc": "PRJNA1086674", "pmid": "39138352", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Impact of Oral Feedings on the Preterm Infant Microbiome and Metabolome"}, {"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}]}, "song w": {"display": "Song W", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA675914", "pmid": "34302348", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "hydrothermally inactive sulfides metagenomes"}, {"acc": "PRJNA730640", "pmid": "34262484", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA730640", "pmid": "34646837", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}]}, "song y": {"display": "Song Y", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB39023", "pmid": "24303043", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Treatment of recurrent Clostridioides difficile infection with Fecal Microbiota Transplan…"}, {"acc": "PRJEB39023", "pmid": "24440222", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Treatment of recurrent Clostridioides difficile infection with Fecal Microbiota Transplan…"}, {"acc": "PRJNA475246", "pmid": "38486699", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA669352", "pmid": "38366247", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome assembly for sulfonamide subsistence and the transfer of genetic determinants"}, {"acc": "PRJNA776332", "pmid": "35280991", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Altered gut microbiome and fecal immune phenotype in early preterm infants with leaky gut"}]}, "song ys": {"display": "Song YS", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA273761", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA376566", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA396794", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA60717", "pmid": "31844663", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analysis of infant stool sample"}]}, "song z": {"display": "Song Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB39536", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Large-scale single-cell long-read genomics enables high-resolution microbiome profiling (…"}]}, "songsomboon k": {"display": "Songsomboon K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1018099", "pmid": "38938117", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Cell-Lysis Treatment Prior to Saliva Metagenomic DNA Extraction on the Oral Mic…"}]}, "soni kg": {"display": "Soni KG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA870588", "pmid": "36843227", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic of preterm infants with cholestasis"}]}, "soni p": {"display": "Soni P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "sonnenburg ed": {"display": "Sonnenburg ED", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB49206", "pmid": "28839072", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}, {"acc": "PRJEB49206", "pmid": "30118385", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}, {"acc": "PRJNA1113165", "pmid": "40102379", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}, {"acc": "PRJNA1177009", "pmid": "40738103", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A human milk oligosaccharide alters the microbiome, circulating hormones, cytokines and m…"}]}, "sonnenburg jl": {"display": "Sonnenburg JL", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB49206", "pmid": "28839072", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}, {"acc": "PRJEB49206", "pmid": "30118385", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}, {"acc": "PRJEB49206", "pmid": "30439937", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}, {"acc": "PRJNA1113165", "pmid": "40102379", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}, {"acc": "PRJNA1177009", "pmid": "40738103", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A human milk oligosaccharide alters the microbiome, circulating hormones, cytokines and m…"}]}, "sonnert nd": {"display": "Sonnert ND", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA390646", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA633576", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}]}, "sontag mk": {"display": "Sontag MK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29078", "pmid": "30352933", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}]}, "soo rm": {"display": "Soo RM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA348149", "pmid": "28360330", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA907943", "pmid": "36949471", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Characterisation and isolation of novel host-associated Methanocorpusculum species from n…"}]}, "sorensen ea": {"display": "Sørensen EA", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB48021", "pmid": "35789207", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of anaerobic digester at Fredericia WWTP with short and long read s…"}, {"acc": "PRJEB48692", "pmid": "35789207", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Sequenced reads for ZymoBIOMICS HMW DNA Standard, including reads from Illumina, Nanopore…"}, {"acc": "PRJEB58634", "pmid": "40707831", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencin…"}]}, "sorensen ps": {"display": "Sørensen PS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51635", "pmid": "36604748", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}]}, "sorensen s": {"display": "Sørensen S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB46943", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA715601", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}]}, "sorensen sj": {"display": "Sørensen SJ", "group": false, "n_studies": 39, "studies": [{"acc": "PRJEB15257", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB32631", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB39223", "pmid": "39138199", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB46943", "pmid": "35181661", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40396485", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB6456", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB84944", "pmid": "40885737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of 56 mother-infant dyads from the ALADDIN birth cohort"}, {"acc": "PRJNA231909", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA272371", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA301903", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA436562", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA524703", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA549787", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA557731", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA698986", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA715601", "pmid": "38135681", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "38730321", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA716780", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA916259", "pmid": "38135681", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}, {"acc": "PRJNA916259", "pmid": "40140473", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}, {"acc": "PRJNA916952", "pmid": "39138199", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Stanford's Outcomes Research in Kids (STORK) Virome"}]}, "soria jc": {"display": "Soria JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "soropogui b": {"display": "Soropogui B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "sorribes-monrabal i": {"display": "Sorribes-Monrabal I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1227883", "pmid": "31053102", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}]}, "sosa-soto g": {"display": "Sosa-Soto G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA268964", "pmid": "27172044", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "27172044", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "sothier m": {"display": "Sothier M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48663", "pmid": "35311446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Increasing the diversity of dietary fibres in a daily-consumed bread modifies gut microbi…"}]}, "soto a": {"display": "Soto A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA880624", "pmid": "38742876", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenomics of single Belgian field mosquitoes."}]}, "soto g": {"display": "Soto G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698223", "pmid": "36470885", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "TD Cusco travelers study"}]}, "soto ocana j": {"display": "Soto Ocaña J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1042647", "pmid": "39440978", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "39440978", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "39440978", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}]}, "sotomayor-gonzalez a": {"display": "Sotomayor-Gonzalez A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA916952", "pmid": "36758519", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Stanford's Outcomes Research in Kids (STORK) Virome"}]}, "soucy s": {"display": "Soucy S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078280", "pmid": "38405928", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Quantifying forms and functions of intestinal bile acid pools in mice"}]}, "soucy sm": {"display": "Soucy SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA955235", "pmid": "42262087", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}]}, "souiai o": {"display": "Souiai O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762668", "pmid": "35547149", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal and comparative analysis of Tunisian newborns gut microbiota according to de…"}]}, "sousa d": {"display": "Sousa D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "southon j": {"display": "Southon J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB41240", "pmid": "33434506", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Heterogeneous hunter-gatherer and steppe-related ancestries in Late Neolithic and Bell Be…"}, {"acc": "PRJNA348754", "pmid": "27939314", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}, {"acc": "PRJNA352376", "pmid": "28072390", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}]}, "souza tml": {"display": "Souza TML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "souza troncoso j": {"display": "Souza Troncoso J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "soverini m": {"display": "Soverini M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA278393", "pmid": "27462302", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA525982", "pmid": "30948795", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transpl…"}, {"acc": "PRJNA877820", "pmid": "32209716", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "sovso m": {"display": "Søvsø M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB66169", "pmid": "41540446", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient DNA study provides clues to leprosy susceptibility in medieval Europe"}]}, "sow so": {"display": "Sow SO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "sowpati dt": {"display": "Sowpati DT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "soylev a": {"display": "Söylev A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701961", "pmid": "37069665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA701961", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "spadazzi r": {"display": "Spadazzi R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA300541", "pmid": "42312244", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "spanogiannopoulos p": {"display": "Spanogiannopoulos P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA412411", "pmid": "34163067", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}]}, "sparagon wj": {"display": "Sparagon WJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819194", "pmid": "35606844", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "KRuMBS: Kyphosid Ruminant Microbial Biodigestor of Seaweeds"}]}, "spear d": {"display": "Spear D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629517", "pmid": "34145447", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "DFO - beads in situ microcosms Raw sequence reads"}]}, "spear jr": {"display": "Spear JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB10054", "pmid": "25212621", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "The 2014 and 2015 International Geobiology Courses took place at Little Hot Creek (LHC),…"}]}, "specker j": {"display": "Specker J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "spector td": {"display": "Spector TD", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA321218", "pmid": "24137540", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "speers d": {"display": "Speers D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "spencer cn": {"display": "Spencer CN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "spencer js": {"display": "Spencer JS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "spencer sj": {"display": "Spencer SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396275", "pmid": "29988721", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Association between oral and gut microbiota in Periodontal Disease"}]}, "speranskaya as": {"display": "Speranskaya AS", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA755866", "pmid": "34696436", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viruses in Bats"}, {"acc": "PRJNA755887", "pmid": "34696436", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Viruses in Bats"}]}, "sperling ai": {"display": "Sperling AI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB20527", "pmid": "26627545", "pos": null, "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Corticosteroid therapy and airflow obstruction influence the bronchial microbiome, which…"}]}, "sphar d": {"display": "Sphar D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA255985", "pmid": "25279840", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human saliva, creek water, and synthetic metagenomic samples used in selective DNA isolat…"}]}, "spicer p": {"display": "Spicer P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}]}, "spiegler j": {"display": "Spiegler J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "spiljar m": {"display": "Spiljar M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43581", "pmid": "34737977", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}]}, "spinner a": {"display": "Spinner A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "21779173", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "spitzer mh": {"display": "Spitzer MH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "spoto m": {"display": "Spoto M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA558989", "pmid": "32004459", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomics of Staphylococcus epidermidis and contextual metagenome"}]}, "spranger j": {"display": "Spranger J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA412411", "pmid": "34163067", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}]}, "spreckels je": {"display": "Spreckels JE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "sprenger n": {"display": "Sprenger N", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB27325", "pmid": "30214024", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}, {"acc": "PRJEB42539", "pmid": "34756056", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "FUT2/FUT3 genes sequences and nasopharyngeal shotgun metagenomics from the Microbiota and…"}, {"acc": "PRJEB54707", "pmid": "35990340", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, 2-HMO vs. control formula"}, {"acc": "PRJEB63183", "pmid": "37457984", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Interactions Between Bifidobacterium and Bacteroides and Human Milk Oligosaccharides and…"}]}, "sprikkelman ab": {"display": "Sprikkelman AB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "springer s": {"display": "Springer S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA679286", "pmid": "34320399", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Global genome analyses reveal a vast and dynamic anellovirus landscape within the human v…"}]}, "sprockett dd": {"display": "Sprockett DD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA290380", "pmid": "32728114", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "spurgin lg": {"display": "Spurgin LG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522699", "pmid": "31427729", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}]}, "spyrou ma": {"display": "Spyrou MA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37508", "pmid": "32528126", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "A treponemal genome from an historic plague victim supports recent emergence of yaws and…"}, {"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "sricharunrat t": {"display": "Sricharunrat T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "sridhar s": {"display": "Sridhar S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573821", "pmid": "32919472", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Whole Meta-genome shotgun sequencing of stool samples from human treated with antibiotics"}]}, "srikrishna g": {"display": "Srikrishna G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "sripan d": {"display": "Sripan D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "sroka a": {"display": "Sroka A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895372", "pmid": "38303501", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiome function and neurodevelopment in Black infants: Vitamin B12 biosynthesis emerg…"}]}, "srour sa": {"display": "Srour SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "ssekagiri a": {"display": "Ssekagiri A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}]}, "ssemwanga d": {"display": "Ssemwanga D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}]}, "st onge m": {"display": "St Onge M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1177009", "pmid": "40738103", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A human milk oligosaccharide alters the microbiome, circulating hormones, cytokines and m…"}]}, "staat ma": {"display": "Staat MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "staedler mm": {"display": "Staedler MM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726636", "pmid": "35382031", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sea otter (Enhydra lutris) Raw sequence reads"}]}, "staffas a": {"display": "Staffas A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "stahl b": {"display": "Stahl B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52748", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome function and composition in infants from rural Kenya and association with…"}, {"acc": "PRJEB6456", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "staliunaite l": {"display": "Staliunaite L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "stalla gk": {"display": "Stalla GK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB86263", "pmid": "39218875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gender-affirming hormonal therapy induces a gender-concordant fecal metagenome transition…"}]}, "stamouli m": {"display": "Stamouli M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1307628", "pmid": "41461922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbial oral-gut translocation in advanced chronic liver disease is linked to exacerbat…"}]}, "stamps bw": {"display": "Stamps BW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB10054", "pmid": "25212621", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "The 2014 and 2015 International Geobiology Courses took place at Little Hot Creek (LHC),…"}]}, "stanford jb": {"display": "Stanford JB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "38782975", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}, {"acc": "PRJEB46659", "pmid": "41265504", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "stanislawski ma": {"display": "Stanislawski MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29078", "pmid": "30352933", "pos": "first", "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}]}, "stankevic e": {"display": "Stankevic E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51635", "pmid": "36604748", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}, {"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}]}, "stanley d": {"display": "Stanley D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA997754", "pmid": "38231265", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Pioneering gut health improvements in piglets with phytogenic feed additives"}]}, "stanley m": {"display": "Stanley M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}]}, "stanton c": {"display": "Stanton C", "group": false, "n_studies": 45, "studies": [{"acc": "PRJEB24006", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB27928", "pmid": "36050292", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB27928", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB29078", "pmid": "37874156", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJEB32631", "pmid": "33960282", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "36050292", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB32731", "pmid": "38424077", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB36820", "pmid": "36050292", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB36820", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB6456", "pmid": "33960282", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9524", "pmid": "38424077", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Expanded Enteric Virome and Altered Bacterial Microbiome in Acquired Immunodeficiency Syn…"}, {"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}, {"acc": "PRJNA272371", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA301903", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA301903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "33960282", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "33960282", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "33960282", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "33960282", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "33960282", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA385126", "pmid": "29761040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA385126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA387903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Intestinal Virome Changes Precede Autoimmunity in Type I Diabetes Susceptible Children"}, {"acc": "PRJNA390646", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA390646", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA396794", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA407341", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA436562", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA446038", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "33960282", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA48479", "pmid": "29761040", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA489090", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA491626", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut virome of Cameroonians living in close proximity with bats"}, {"acc": "PRJNA521878", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA521878", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA545408", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Longitudinal study of the human gut virome"}, {"acc": "PRJNA555020", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA562766", "pmid": "36050292", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA562766", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA657818", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA657818", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA971895", "pmid": "38310316", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Resismet"}]}, "stappenbeck ts": {"display": "Stappenbeck TS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB7772", "pmid": "25619688", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}]}, "stares md": {"display": "Stares MD", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}, {"acc": "PRJEB32631", "pmid": "31534227", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA400115", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}, {"acc": "PRJNA806984", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}, {"acc": "PRJNA994433", "pmid": "39242817", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Variability of Bifidobacterium Species in the Infant Gut is Independent of M…"}]}, "starke cwe": {"display": "Starke CWE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}]}, "starrett gj": {"display": "Starrett GJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "stauning ma": {"display": "Stauning MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA592050", "pmid": "31738985", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Air genomes from surgical room Raw sequence reads"}]}, "stavroulaki m": {"display": "Stavroulaki M", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "stearns jc": {"display": "Stearns JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA805248", "pmid": "36008821", "pos": "last", "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Targeted Capture of AMR in Preterm infants after probiotic exposure"}]}, "stebliankin v": {"display": "Stebliankin V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA301903", "pmid": "36748547", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}]}, "stecher b": {"display": "Stecher B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26596", "pmid": "27869789", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}, {"acc": "PRJEB26596", "pmid": "29051233", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating short- and long-term genome evolution of commensal bacteria using the Oligo…"}]}, "steckhan n": {"display": "Steckhan N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}]}, "steel m": {"display": "Steel M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12272", "pmid": "27984120", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A statistical test for the detection of inhomogeneity in metagenomic samples"}]}, "steenhoff ap": {"display": "Steenhoff AP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "steer b": {"display": "Steer B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42185", "pmid": "34192537", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}]}, "stefanovic v": {"display": "Stefanovic V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64567", "pmid": "33007265", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Maternal FMT in Cesarean-Born Infants - WGS sequencing of infants (1w to 1year) and mater…"}]}, "stefanovski d": {"display": "Stefanovski D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31678062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "steffen m": {"display": "Steffen M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA812770", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Lake Erie eDNA HAB samples"}]}, "stehouwer cda": {"display": "Stehouwer CDA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26795", "pmid": "30609941", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}]}, "stein a": {"display": "Stein A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}, {"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "stein rr": {"display": "Stein RR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA259179", "pmid": "25337874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Studies of intestinal microbiome and infection resistance"}]}, "stein-thoeringer ck": {"display": "Stein-Thoeringer CK", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB54704", "pmid": "36914893", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}, {"acc": "PRJNA545312", "pmid": "31780560", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "steindler l": {"display": "Steindler L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA515489", "pmid": "31086829", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genomic collection of symbionts associated with Petrosia ficiformis"}, {"acc": "PRJNA515489", "pmid": "32840024", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genomic collection of symbionts associated with Petrosia ficiformis"}, {"acc": "PRJNA515489", "pmid": "33537022", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genomic collection of symbionts associated with Petrosia ficiformis"}]}, "steiner re": {"display": "Steiner RE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "steiner t": {"display": "Steiner T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA599270", "pmid": "32179689", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Honey bee gut virome"}]}, "steinert c": {"display": "Steinert C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "stenderup j": {"display": "Stenderup J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "stengel b": {"display": "Stengel B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "stenhaug sr": {"display": "Stenhaug SR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1233203", "pmid": null, "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Microbiome of recirculating aquaculture systems under different particle loads (MikroRAS)"}]}, "stensland l": {"display": "Stensland L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28287142", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "stephens b": {"display": "Stephens B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14474", "pmid": "28539477", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}]}, "stephens m": {"display": "Stephens M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}]}, "stephens n": {"display": "Stephens N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA678472", "pmid": "34407825", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Long-term persistence of crAss-like phage crAss001 in Bacteroides intestinalis cultures i…"}]}, "stephensen cb": {"display": "Stephensen CB", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB15633", "pmid": "35406036", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJEB6456", "pmid": "30258040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA436562", "pmid": "30258040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}]}, "sterflinger k": {"display": "Sterflinger K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA655381", "pmid": "33329475", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome of drawings by Leonardo Da Vinci"}]}, "stern db": {"display": "Stern DB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA988496", "pmid": "40823537", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}]}, "sterpu i": {"display": "Sterpu I", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37731", "pmid": "42203854", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB38528", "pmid": "42203854", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}]}, "stevanovski i": {"display": "Stevanovski I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "stevens-ayers tl": {"display": "Stevens-Ayers TL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28838146", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "stevenson bs": {"display": "Stevenson BS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB10054", "pmid": "25212621", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "The 2014 and 2015 International Geobiology Courses took place at Little Hot Creek (LHC),…"}]}, "stevenson dk": {"display": "Stevenson DK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA288562", "pmid": "26283357", "pos": null, "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}]}, "steves cj": {"display": "Steves CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB72531", "pmid": "38424099", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prebiotic intervention for muscle function and cognition"}]}, "steves cm": {"display": "Steves CM", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "stewart cj": {"display": "Stewart CJ", "group": false, "n_studies": 10, "studies": [{"acc": "PRJEB39610", "pmid": "39216480", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB49383", "pmid": "36163498", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm Neonatal Stool Metagenomes"}, {"acc": "PRJEB49383", "pmid": "39183307", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm Neonatal Stool Metagenomes"}, {"acc": "PRJNA268964", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA392180", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA485056", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA497734", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA935534", "pmid": "37700351", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Calf microbiome features associated with susceptibility to C.parvum infection"}]}, "stewart gr": {"display": "Stewart GR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "stewart ls": {"display": "Stewart LS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "stewart rd": {"display": "Stewart RD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21624", "pmid": "29491419", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of the rumen of Scottish cattle."}]}, "stigum h": {"display": "Stigum H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29078", "pmid": "30813950", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}]}, "stinson lf": {"display": "Stinson LF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819247", "pmid": "36060782", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome Raw sequence reads"}]}, "stintzi a": {"display": "Stintzi A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA818303", "pmid": "36823020", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated metagenomics, metaviromics, and metatranscriptomics reveal colonic virome-bact…"}]}, "stobaugh h": {"display": "Stobaugh H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1355224", "pmid": "42037384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human metagenomic samples Metagenome"}]}, "stock m": {"display": "Stock M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1113165", "pmid": "40102379", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}]}, "stockdale sr": {"display": "Stockdale SR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA385126", "pmid": "29761040", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA48479", "pmid": "29761040", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "stocker md": {"display": "Stocker MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1062331", "pmid": "38242477", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Pond microbiome spatiotemporal variation"}]}, "stockham n": {"display": "Stockham N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "34666677", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "stoddard gd": {"display": "Stoddard GD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "30674273", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "stoen r": {"display": "Støen R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29052", "pmid": "30505830", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}]}, "stoermann c": {"display": "Stoermann C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43505", "pmid": "34535959", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut barrier and microbiota changes with glycine and branched chain amino acids supplement…"}]}, "stoesser n": {"display": "Stoesser N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "34609275", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "stoffel nu": {"display": "Stoffel NU", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52748", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome function and composition in infants from rural Kenya and association with…"}, {"acc": "PRJEB6456", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "stoica a": {"display": "Stoica A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1071073", "pmid": "38530358", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Transgender Mouse Bone Microbiome"}]}, "stojanovic o": {"display": "Stojanovic O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43581", "pmid": "34737977", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}]}, "stokholm j": {"display": "Stokholm J", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB29078", "pmid": "37874156", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJEB46943", "pmid": "35181661", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40396485", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "41387423", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB84944", "pmid": "40885737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of 56 mother-infant dyads from the ALADDIN birth cohort"}, {"acc": "PRJNA296814", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA322188", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA715601", "pmid": "38135681", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "38730321", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA916259", "pmid": "38135681", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}, {"acc": "PRJNA916259", "pmid": "40140473", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}]}, "stolpman m": {"display": "Stolpman M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "stoltzfus rj": {"display": "Stoltzfus RJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "stone ac": {"display": "Stone AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445215", "pmid": "29959351", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "stone m": {"display": "Stone M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "stone nl": {"display": "Stone NL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}]}, "stone s": {"display": "Stone S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB10057", "pmid": "26180832", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Variation in the Microbiota of Ixodes ticks with geography, species and sex"}, {"acc": "PRJEB10073", "pmid": "26180832", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Variation in the Microbiota of Ixodes ticks with geography, species and sex illumina"}]}, "stora j": {"display": "Storå J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9783", "pmid": "26351665", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing Chalcolithic human remains from El Portalón, Spain"}]}, "storey m": {"display": "Storey M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB82926", "pmid": "40431157", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic Supplementation Impacts Gut Microbiota Development in Infants at Risk of Atopy:…"}]}, "storsrud s": {"display": "Störsrud S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB34992", "pmid": "33771219", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet and gut microbiome interactions of relevance for symptoms in irritable bowel syndrome"}]}, "stothard jr": {"display": "Stothard JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1211045", "pmid": "40833797", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Freshwater snail faeces raw sequence reads"}]}, "stott mb": {"display": "Stott MB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA431961", "pmid": "39696719", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Geothermal fumarole subsurface microbial communities from Mt. Erebus, Antarctica"}]}, "stoving rk": {"display": "Støving RK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}]}, "stoyanov j": {"display": "Stoyanov J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1139160", "pmid": "40229352", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uro-Vaxom Pilot"}]}, "strachan e": {"display": "Strachan E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "30383234", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "straight me": {"display": "Straight ME", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "straily a": {"display": "Straily A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28369502", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "strain c": {"display": "Strain C", "group": false, "n_studies": 8, "studies": [{"acc": "PRJEB32631", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA322188", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA339914", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA475246", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "strang a": {"display": "Strang A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB32631", "pmid": "31534227", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}]}, "strati p": {"display": "Strati P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "straub tj": {"display": "Straub TJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1222487", "pmid": "42293161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome signatures and reduced Faecalibacterium and Roseburia in infants with earl…"}]}, "straussman r": {"display": "Straussman R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "strawn lk": {"display": "Strawn LK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA506850", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "USDA Developing Computational Tools To Identify Critical Control Points For Mitigating Th…"}]}, "streblow dn": {"display": "Streblow DN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "streit wr": {"display": "Streit WR", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB15376", "pmid": "29067007", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome, metatranscriptome and exo-proteome analyses identify molecular keys and main…"}, {"acc": "PRJEB40662", "pmid": "34675897", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Deep (Meta)genomics and (Meta)transcriptome Analyses of Fungal and Bacteria Consortia Fro…"}, {"acc": "PRJNA240141", "pmid": "25208077", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Elephant feces Metagenome"}, {"acc": "PRJNA240141", "pmid": "36284144", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "strelkova e": {"display": "Strelkova E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "strength r": {"display": "Strength R", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1280936", "pmid": "41405404", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome of Infants in the Neonatal Intensive Care Unit"}, {"acc": "PRJNA417283", "pmid": "41405404", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA988496", "pmid": "41405404", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}]}, "striano p": {"display": "Striano P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1168703", "pmid": "38485093", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of an epilepsy-linked gut microbiota signature in a pediatric rat model of…"}]}, "stringer j": {"display": "Stringer J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27932649", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "stroes es": {"display": "Stroes ES", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}]}, "stroes esg": {"display": "Stroes ESG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "strous m": {"display": "Strous M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA377096", "pmid": "28367229", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soda lake innocuated bioreactors"}, {"acc": "PRJNA377096", "pmid": "31530813", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soda lake innocuated bioreactors"}, {"acc": "PRJNA377096", "pmid": "35222325", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soda lake innocuated bioreactors"}]}, "strowig t": {"display": "Strowig T", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}, {"acc": "PRJNA1115039", "pmid": "39673707", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary selective effects manifest in the human gut microbiota from species composition t…"}, {"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}, {"acc": "PRJNA947377", "pmid": "38366600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Establishment of a non-Westernized gut microbiota in men who have sex with men is associa…"}]}, "strube ml": {"display": "Strube ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA776087", "pmid": "36973820", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}]}, "strycharz-angrecka e": {"display": "Strycharz-Angrecka E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA290380", "pmid": "30894435", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "stryke d": {"display": "Stryke D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA644725", "pmid": "32958861", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA916952", "pmid": "36758519", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Stanford's Outcomes Research in Kids (STORK) Virome"}]}, "stryker e": {"display": "Stryker E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": "39122767", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "stubberfield e": {"display": "Stubberfield E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "34609275", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "stuijts i": {"display": "Stuijts I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}]}, "stumvoll m": {"display": "Stumvoll M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "styllas m": {"display": "Styllas M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA781406", "pmid": "35444202", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Vanishing Glaciers Project"}]}, "su hc": {"display": "Su HC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}, {"acc": "PRJNA471898", "pmid": "30397357", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The skin microbiome of DOCK8-deficient patients"}]}, "su j": {"display": "Su J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA776087", "pmid": "36973820", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}]}, "su jq": {"display": "Su JQ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA598014", "pmid": "34454634", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Broiler Chicken Cloacal and Litter Meta-genomic Samples"}]}, "su q": {"display": "Su Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA876804", "pmid": "36357381", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Human Metagenomic Metagenome"}]}, "su s": {"display": "Su S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1106097", "pmid": "41411653", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Leuconostoc citreum enhances the colonization ability of Lactiplantibacillus plantarum in…"}]}, "su x": {"display": "Su X", "group": false, "n_studies": 17, "studies": [{"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "su z": {"display": "Su Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "suarez m": {"display": "Suarez M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6972", "pmid": "25491920", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The microbial colonization of the intestine during the first monthsof life constitutes th…"}]}, "subbarao p": {"display": "Subbarao P", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "37644001", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "40623174", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "42337243", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "subklewe m": {"display": "Subklewe M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "subramanian a": {"display": "Subramanian A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA398089", "pmid": "35614211", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}]}, "subramanian p": {"display": "Subramanian P", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA417283", "pmid": "29988506", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA486782", "pmid": "32917289", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}, {"acc": "PRJNA988496", "pmid": "38773685", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}, {"acc": "PRJNA988496", "pmid": "40823537", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts gut bacteriophage colonization during infancy"}]}, "subudhi e": {"display": "Subudhi E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1020650", "pmid": "36676144", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Apical Periodontal sample Metagenomes"}]}, "sucgang r": {"display": "Sucgang R", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "suchan dm": {"display": "Suchan DM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1279254", "pmid": "41562608", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of synovial joint fluid collected from feedlot cattle. Raw sequenc…"}]}, "suchodolski js": {"display": "Suchodolski JS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA49397", "pmid": "20962874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Canine gastrointestinal metagenome"}]}, "suda w": {"display": "Suda W", "group": false, "n_studies": 6, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}, {"acc": "PRJDB8956", "pmid": "34586399", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An efficient and accurate reconstruction of the full-length phage genomes by chimera-free…"}, {"acc": "PRJNA362284", "pmid": "31455406", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}, {"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}, {"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "sudo k": {"display": "Sudo K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078280", "pmid": "38405928", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Quantifying forms and functions of intestinal bile acid pools in mice"}]}, "suematsu m": {"display": "Suematsu M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "suez j": {"display": "Suez J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "suffys pn": {"display": "Suffys PN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "sugihara k": {"display": "Sugihara K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1148165", "pmid": "39947133", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut metagenomic samples of IBD patients"}]}, "sugimoto r": {"display": "Sugimoto R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB15258", "pmid": "38265980", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of 7,000 to 5,500 years old coprolites excavated from the Torihama s…"}, {"acc": "PRJEB15334", "pmid": "32994538", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Radcliffe dental calculus"}]}, "sugimoto y": {"display": "Sugimoto Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1148165", "pmid": "39947133", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut metagenomic samples of IBD patients"}]}, "sugino ky": {"display": "Sugino KY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA845806", "pmid": "35966074", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Trial of Diet in Gestational Diabetes Mellitus: Metabolic Consequences to Mother and Offs…"}]}, "sugiura y": {"display": "Sugiura Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "sugiyama e": {"display": "Sugiyama E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "suh g": {"display": "Suh G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1111475", "pmid": "39813050", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics in patients with central centrifugal cicatricial alopecia (CCCA)"}]}, "suh gs": {"display": "Suh GS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1369410", "pmid": "42242497", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics sequencing from patients with CD4 lymphopenia"}]}, "suh sh": {"display": "Suh SH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA853174", "pmid": "35891376", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "sui hy": {"display": "Sui HY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "sukhum kv": {"display": "Sukhum KV", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1206145", "pmid": "40898384", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of the gut microbiome from infants enrolled in a randomized controlled…"}, {"acc": "PRJNA1222487", "pmid": "42293161", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome signatures and reduced Faecalibacterium and Roseburia in infants with earl…"}]}, "sulaiman bc": {"display": "Sulaiman BC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87602", "pmid": "37243505", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteria in colitis associated cancer development"}]}, "suleiman m": {"display": "Suleiman M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA609054", "pmid": "33416984", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic data set of enrichment samples from azores 2018 Raw sequence reads"}]}, "sullins ra": {"display": "Sullins RA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1070654", "pmid": "38712930", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Seasonality of Respiratory, Enteric and Urinary Viruses in Wastewater"}]}, "sullivan je": {"display": "Sullivan JE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884103", "pmid": "37134153", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}]}, "sullivan mb": {"display": "Sullivan MB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA552463", "pmid": "32841606", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "IBD virome Raw sequence reads"}]}, "sullivan mj": {"display": "Sullivan MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156595", "pmid": "39827146", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics: a new frontier for routine pathology testing of gastrointestinal pathogens"}]}, "sultana s": {"display": "Sultana S", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB42539", "pmid": "34756056", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "FUT2/FUT3 genes sequences and nasopharyngeal shotgun metagenomics from the Microbiota and…"}, {"acc": "PRJEB83236", "pmid": "40951971", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "SEPSIS Human Microbiome Study"}, {"acc": "PRJNA506325", "pmid": "23102968", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Phages Raw sequence reads"}, {"acc": "PRJNA706606", "pmid": "36416733", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of Water Chlorination of Children's Gut Microbiomes in Bangladesh"}, {"acc": "PRJNA726052", "pmid": "35422497", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effects of drinking water chlorination on childrens intestinal flora and resistomes in Dh…"}, {"acc": "PRJNA806984", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}]}, "sumner s": {"display": "Sumner S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA296814", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA695570", "pmid": "38760865", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "sumner sj": {"display": "Sumner SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA296814", "pmid": "34454437", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}]}, "sun b": {"display": "Sun B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA936938", "pmid": "36992458", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "searching for viruses in Asiatic toad Raw sequence reads"}]}, "sun c": {"display": "Sun C", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA48479", "pmid": "38882493", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA504891", "pmid": "36376928", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA524703", "pmid": "40600714", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA835720", "pmid": "40600714", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human feces Viral/Bacterial Metagenome"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "sun cl": {"display": "Sun CL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA288562", "pmid": "26283357", "pos": null, "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}, {"acc": "PRJNA362245", "pmid": "28630471", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Microbiome assembly across multiple body sites in low-birthweight infants"}]}, "sun g": {"display": "Sun G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA336061", "pmid": "28801639", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prevotella enterotype related metagenome sequencing"}, {"acc": "PRJNA986854", "pmid": "40467587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "stool sample of paired mother-infant for 16S rRNA sequencing analysis"}]}, "sun h": {"display": "Sun H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}, {"acc": "PRJNA323812", "pmid": "27866251", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "wastewater metagenome Genome sequencing"}]}, "sun l": {"display": "Sun L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA580164", "pmid": "32552447", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome Raw sequence reads"}]}, "sun ly": {"display": "Sun LY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA730640", "pmid": "34262484", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA730640", "pmid": "34646837", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}]}, "sun m": {"display": "Sun M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1170175", "pmid": "40248366", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Vaginal Virome of Healthy Women and Patients with Vaginitis"}]}, "sun r": {"display": "Sun R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}, {"acc": "PRJNA1087008", "pmid": "39236827", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic and Metatranscriptomic data of Marine Microbes in Coastal Waters of the South…"}]}, "sun s": {"display": "Sun S", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1184213", "pmid": "40765991", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The microbiota-dependent effect of physical activity on Crohn's disease"}, {"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}, {"acc": "PRJNA787952", "pmid": "35239511", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA876771", "pmid": "36975801", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Vaginal microbiome metagenome inference accuracy: differential measurement error accordin…"}]}, "sun t": {"display": "Sun T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1445880", "pmid": "42010622", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome samples Gastrointestinal Microbiome and Allergic Proctocolitis coho…"}, {"acc": "PRJNA858926", "pmid": "36687649", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}]}, "sun w": {"display": "Sun W", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}, {"acc": "PRJNA433058", "pmid": "37854337", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "sun x": {"display": "Sun X", "group": false, "n_studies": 11, "studies": [{"acc": "PRJEB6456", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA475246", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA486782", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA510445", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA549787", "pmid": "31832638", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA630999", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA739008", "pmid": "37866373", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Effect of amoxicillin prophylaxis on gut microbiome and resistome for severe acute malnut…"}, {"acc": "PRJNA986854", "pmid": "40467587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "stool sample of paired mother-infant for 16S rRNA sequencing analysis"}]}, "sun y": {"display": "Sun Y", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA1005597", "pmid": "37896845", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "feces metagenome Metagenome"}, {"acc": "PRJNA1070846", "pmid": "38647334", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal metagenomic sequecing"}, {"acc": "PRJNA427267", "pmid": "29235710", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pearl River metagenomics Raw sequence reads"}, {"acc": "PRJNA524703", "pmid": "36659812", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA821338", "pmid": "36259361", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial pathogens and antimicrobial resistance diagnosis workflow using Nanopore adapti…"}, {"acc": "PRJNA869513", "pmid": "36259361", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An ultra-sensitive bacterial pathogen and antimicrobial resistance diagnosis workflow usi…"}]}, "sun z": {"display": "Sun Z", "group": false, "n_studies": 8, "studies": [{"acc": "PRJNA1065277", "pmid": "39268487", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal factors are more capable of influencing the structure of infant gut microbes and…"}, {"acc": "PRJNA1218236", "pmid": "40144527", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Analysis of Intragastric Administration of Donkey Milk on Mouse Immunity Using Gut Microb…"}, {"acc": "PRJNA741607", "pmid": "38540144", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Inhibitory Effects of Lactulose on Colitis-Associated Carcinogenesis by Restoration of th…"}, {"acc": "PRJNA781781", "pmid": "38169289", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of Lactobacillus plantarum P-8 on Growth Performance and Gut Microbiota of Weaned…"}, {"acc": "PRJNA801914", "pmid": "38982403", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of spraying Lactobacillus plantarum P-8 on growth characteristics of neonatal pig…"}, {"acc": "PRJNA810575", "pmid": "36419187", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes of maternal and infant faecal samples"}, {"acc": "PRJNA835973", "pmid": "38540144", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Lactobacillus rhamnosus Probio-M9 alleviates colitis-associated tumorigenesis via modifie…"}, {"acc": "PRJNA902684", "pmid": "39135694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome level reveals the regulatory effect of probiotics to mastitis rats"}]}, "sunagawa s": {"display": "Sunagawa S", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12357", "pmid": "27126044", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB46778", "pmid": "27126044", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJEB76677", "pmid": "28039159", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota differs between children with Inflammatory Bowel Disease and healthy sibli…"}, {"acc": "PRJNA289586", "pmid": "30747106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}]}, "sundararajan a": {"display": "Sundararajan A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB102033", "pmid": "41330369", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lantibiotic-producing bacteria impact microbiome resilience and colonization resistance"}, {"acc": "PRJNA504891", "pmid": "41118772", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "sundararajan s": {"display": "Sundararajan S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA774819", "pmid": "35695455", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Highly specialized carbohydrate metabolism capability in Bifidobacterium strain associate…"}, {"acc": "PRJNA776332", "pmid": "35280991", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Altered gut microbiome and fecal immune phenotype in early preterm infants with leaky gut"}]}, "sundaresh b": {"display": "Sundaresh B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "sundermann aj": {"display": "Sundermann AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA475137", "pmid": "33245689", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhizopus oryzae Genome sequencing and assembly"}]}, "sundrud ms": {"display": "Sundrud MS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078280", "pmid": "38405928", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Quantifying forms and functions of intestinal bile acid pools in mice"}]}, "sundstrom j": {"display": "Sundström J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}, {"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "sundstrom-poromaa i": {"display": "Sundström-Poromaa I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62678", "pmid": "31641004", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "BASIC: Biology, Affect, Stress, Imaging and Cognition in pregnancy"}]}, "sung ad": {"display": "Sung AD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "sung cc": {"display": "Sung CC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1145565", "pmid": "39234544", "pos": "first", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "WES of Taiwain Children with Enterovirus (EV) Infections"}]}, "sung jjy": {"display": "Sung JJY", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA353598", "pmid": "28539351", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA504921", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA506811", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "HUMAN GUT RECTAL BACTERIA Metagenome"}, {"acc": "PRJNA715634", "pmid": "34035441", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Novel Strain Level Resolution of Crohns Disease Mucosa-Associated Microbiota via an ex vi…"}]}, "sung-ho kim j": {"display": "Sung-Ho Kim J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "sungkanuparph s": {"display": "Sungkanuparph S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA766776", "pmid": "35909623", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut Microbiome in HIV patients"}]}, "suo l": {"display": "Suo L", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1029896", "pmid": "39227902", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA660305", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism, up-regulated colon inf…"}, {"acc": "PRJNA660966", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism and up-regulated colon…"}]}, "suolang s": {"display": "Suolang S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA624740", "pmid": "33036549", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of yak faecal microbiota"}, {"acc": "PRJNA994670", "pmid": "39242698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial community characterization and molecular resistance monitoring in geriatric int…"}]}, "suomalainen m": {"display": "Suomalainen M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27325", "pmid": "30326954", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}]}, "suppula j": {"display": "Suppula J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59350", "pmid": "39143178", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "deep shotgun DNA sequencing of 136 patient’s fecal samples (Parkinson vs Control)"}, {"acc": "PRJEB59350", "pmid": "40258842", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "deep shotgun DNA sequencing of 136 patient’s fecal samples (Parkinson vs Control)"}]}, "suputtamongkol y": {"display": "Suputtamongkol Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "suratannon n": {"display": "Suratannon N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA637175", "pmid": "33668840", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}]}, "surathu a": {"display": "Surathu A", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1084251", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tryptophan metabolites in fecal samples from healthy humans"}, {"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "39282326", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1195144", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA1224818", "pmid": "38361816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with n…"}]}, "surendra kumar m": {"display": "Surendra Kumar M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019500", "pmid": "39054413", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}]}, "surette mg": {"display": "Surette MG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA674643", "pmid": "35474894", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Validation of Coronavirus and Sepsis Probe Sets designed using HUBDesign"}]}, "suriano f": {"display": "Suriano F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43505", "pmid": "34535959", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut barrier and microbiota changes with glycine and branched chain amino acids supplement…"}]}, "surve sv": {"display": "Surve SV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA955235", "pmid": "42262087", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}]}, "susat j": {"display": "Susat J", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}, {"acc": "PRJEB36413", "pmid": "32884081", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Yersinia pestis strains from Latvia show depletion of the pla virulence gene at the end o…"}, {"acc": "PRJEB41353", "pmid": "33997698", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Mass burial genomics reveals outbreak of enteric paratyphoid fever in the Late Medieval t…"}, {"acc": "PRJEB42185", "pmid": "34192537", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}, {"acc": "PRJEB49648", "pmid": "39155318", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Neolithic Yersinia pestis infections in humans and a dog"}]}, "susnjar u": {"display": "Šušnjar U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}]}, "suster cje": {"display": "Suster CJE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "sutherland m": {"display": "Sutherland M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA596855", "pmid": "31383310", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Disease surveillance in wild Victorian cacatuids"}]}, "sutter jl": {"display": "Sutter JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27308", "pmid": "30974084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome metagenome analysis of stool samples from individuals with low and high saliva…"}]}, "suvisaari j": {"display": "Suvisaari J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1044118", "pmid": "38061464", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human oral and gut microbiome in first episode psychosis patients"}]}, "suvorova ia": {"display": "Suvorova IA", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB11419", "pmid": "36032669", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJNA398089", "pmid": "36032669", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA400115", "pmid": "36032669", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}]}, "suzuki m": {"display": "Suzuki M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10711", "pmid": "34090359", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics for pathogens detection from patients with fever of unknown origin"}]}, "suzuki t": {"display": "Suzuki T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB10705", "pmid": "34859110", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Blood microbiome in febrile patients"}, {"acc": "PRJDB10711", "pmid": "34090359", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics for pathogens detection from patients with fever of unknown origin"}]}, "suzuki y": {"display": "Suzuki Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA362284", "pmid": "31455406", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}]}, "svanevik m": {"display": "Svanevik M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}, {"acc": "PRJEB59861", "pmid": "31678062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "svarre-nielsen h": {"display": "Svarre-Nielsen H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37731", "pmid": "33208514", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}]}, "sveier h": {"display": "Sveier H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64334", "pmid": "38294254", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Multi-omics of host-gut microbiota interactions in healthy and parasitized farmed Atlanti…"}]}, "svendsen ca": {"display": "Svendsen CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12466", "pmid": "26161690", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Meta-genomic analysis of toilet waste from long distance flights"}]}, "svensson em": {"display": "Svensson EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9783", "pmid": "26351665", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing Chalcolithic human remains from El Portalón, Spain"}]}, "sverrisdottir oo": {"display": "Sverrisdóttir ÓO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9783", "pmid": "26351665", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing Chalcolithic human remains from El Portalón, Spain"}]}, "svirskis dm": {"display": "Svirskis DM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA637785", "pmid": "33346848", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA637785", "pmid": "33985595", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}]}, "swafford ad": {"display": "Swafford AD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}]}, "swaminathan g": {"display": "Swaminathan G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961698", "pmid": "37610205", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Very Early Life Microbiome and Metabolome Correlates with Primary Vaccination Variability…"}]}, "swaminathan h": {"display": "Swaminathan H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA679286", "pmid": "34320399", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Global genome analyses reveal a vast and dynamic anellovirus landscape within the human v…"}]}, "swaney mh": {"display": "Swaney MH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078287", "pmid": "39425237", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Infant Upper Respiratory Microbiome"}]}, "swanson ks": {"display": "Swanson KS", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA49397", "pmid": "20962874", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Canine gastrointestinal metagenome"}, {"acc": "PRJNA657304", "pmid": "33542301", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun Sequencing of Dog Coprolites"}]}, "swanson pk": {"display": "Swanson PK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}]}, "swarthout jm": {"display": "Swarthout JM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA706606", "pmid": "36416733", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of Water Chlorination of Children's Gut Microbiomes in Bangladesh"}, {"acc": "PRJNA726052", "pmid": "35422497", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effects of drinking water chlorination on childrens intestinal flora and resistomes in Dh…"}]}, "sweet mj": {"display": "Sweet MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA649484", "pmid": "34389536", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "sweke ea": {"display": "Sweke EA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675607", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Biogeochemistry study on Lake Tanganyika in Tanzania"}]}, "swennes ag": {"display": "Swennes AG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "swertz ma": {"display": "Swertz MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "switzer ad": {"display": "Switzer AD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726636", "pmid": "35382031", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sea otter (Enhydra lutris) Raw sequence reads"}]}, "sylven s": {"display": "Sylvén S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62678", "pmid": "31641004", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "BASIC: Biology, Affect, Stress, Imaging and Cognition in pregnancy"}]}, "sylvester f": {"display": "Sylvester F", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}]}, "sylvester kg": {"display": "Sylvester KG", "group": false, "n_studies": 8, "studies": [{"acc": "PRJNA273761", "pmid": "36081629", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "36081629", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "36081629", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA327106", "pmid": "36081629", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "36081629", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA396794", "pmid": "36081629", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA633576", "pmid": "33479326", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA63661", "pmid": "36081629", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "syriani l": {"display": "Syriani L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": null, "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "syriani la": {"display": "Syriani LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": "35365713", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "szabady r": {"display": "Szabady R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1463324", "pmid": "41342324", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "VE202 phase 1 stool metagenomes"}, {"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "szabady rl": {"display": "Szabady RL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1071720", "pmid": "38572716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FECBUD Study Fecal Metagenomes"}]}, "szczepaniak-sloane ra": {"display": "Szczepaniak-Sloane RA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "szelecz i": {"display": "Szelecz I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB25144", "pmid": "25874666", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Temporal patterns of soil micro-eukaryotic diversity beneath decomposing pig cadavers as…"}]}, "szeto im": {"display": "Szeto IM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858926", "pmid": "37771701", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}]}, "szeverenyi v": {"display": "Szeverényi V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "szilagyi pg": {"display": "Szilagyi PG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "szita g": {"display": "Szita G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA591315", "pmid": "32366826", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "raw milk metagenome"}, {"acc": "PRJNA644779", "pmid": "33384459", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "yogurt and kefir seed culture sequencing"}]}, "szostak n": {"display": "Szóstak N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA749919", "pmid": "35589762", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An optimized approach to the metagenomic population studies: from sample donation to comm…"}]}, "szymanek a": {"display": "Szymanek A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA749919", "pmid": "35589762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An optimized approach to the metagenomic population studies: from sample donation to comm…"}]}, "ta a": {"display": "Ta A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417283", "pmid": "29988506", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}]}, "ta ldh": {"display": "Ta LDH", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA642723", "pmid": "33023370", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "tabernero d": {"display": "Tabernero D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1424541", "pmid": "42005844", "pos": null, "reason_code": "assay_rna", "src": "L", "status": "excluded", "title_short": "Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics"}]}, "taboada b": {"display": "Taboada B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA592261", "pmid": "32788688", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "35196791", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "36650178", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}]}, "tacchini v": {"display": "Tacchini V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81450", "pmid": "40562730", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Streptococcus gordonii endocarditis"}]}, "tacconelli e": {"display": "Tacconelli E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB121228", "pmid": "38793608", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}, {"acc": "PRJEB121228", "pmid": "41683794", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}]}, "taddei cr": {"display": "Taddei CR", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1072081", "pmid": "40237336", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Identifying Biomarkers and Trajectories of Typical Neurodevelopment in Children, the BRAI…"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "tae ih": {"display": "Tae IH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45443", "pmid": "35485368", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}]}, "taelman s": {"display": "Taelman S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1113165", "pmid": "40102379", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}]}, "taft dh": {"display": "Taft DH", "group": false, "n_studies": 18, "studies": [{"acc": "PRJEB15633", "pmid": "35406036", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJEB6456", "pmid": "30258040", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA273761", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA384716", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA436562", "pmid": "30258040", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA63661", "pmid": "25332767", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA63661", "pmid": "26110908", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA63661", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "tahara m": {"display": "Tahara M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "tahlak m": {"display": "Tahlak M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130109", "pmid": "39081889", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome study"}]}, "taiaroa g": {"display": "Taiaroa G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "takagaki m": {"display": "Takagaki M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "takahashi e": {"display": "Takahashi E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10675", "pmid": "36376441", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "International collaborative studies on the prevention, diagnosis, and drug discovery for…"}]}, "takahashi y": {"display": "Takahashi Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10705", "pmid": "34859110", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Blood microbiome in febrile patients"}]}, "takaki y": {"display": "Takaki Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB3979", "pmid": "26877136", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of the RNA viral communities in a diatom colony"}]}, "takamoto i": {"display": "Takamoto I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "takeda k": {"display": "Takeda K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "takehara t": {"display": "Takehara T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "takei h": {"display": "Takei H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "takeshita k": {"display": "Takeshita K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}, {"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "takeuchi s": {"display": "Takeuchi S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10705", "pmid": "34859110", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Blood microbiome in febrile patients"}]}, "takeuchi t": {"display": "Takeuchi T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "takeyama h": {"display": "Takeyama H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA692334", "pmid": "34641955", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Recovery of high-quality assembled genomes via single-cell genome-guided binning of metag…"}]}, "talavera-gonzalez ja": {"display": "Talavera-González JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "talavera-rodriguez a": {"display": "Talavera-Rodríguez A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "tallapaka kb": {"display": "Tallapaka KB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "tallon lj": {"display": "Tallon LJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA774819", "pmid": "35695455", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Highly specialized carbohydrate metabolism capability in Bifidobacterium strain associate…"}]}, "talmor-barkan y": {"display": "Talmor-Barkan Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "tam kk": {"display": "Tam KK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "tam lm": {"display": "Tam LM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "tam wh": {"display": "Tam WH", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}]}, "tamaki h": {"display": "Tamaki H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "tamboura b": {"display": "Tamboura B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB70237", "pmid": "41786702", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}]}, "tamir s": {"display": "Tamir S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991320", "pmid": "37794974", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Depression in older adults"}]}, "tamrakar d": {"display": "Tamrakar D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019500", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}]}, "tamrakar vk": {"display": "Tamrakar VK", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA986135", "pmid": "37469596", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "UTI microbiome"}, {"acc": "PRJNA995059", "pmid": "36825940", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Respiratory Microbiome"}]}, "tan al": {"display": "Tan AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "tan ds": {"display": "Tan DS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1206145", "pmid": "40898384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of the gut microbiome from infants enrolled in a randomized controlled…"}]}, "tan gya": {"display": "Tan GYA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "tan kh": {"display": "Tan KH", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "tan l": {"display": "Tan L", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1084251", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tryptophan metabolites in fecal samples from healthy humans"}, {"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}, {"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "tan sk": {"display": "Tan SK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644725", "pmid": "32958861", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}]}, "tan w": {"display": "Tan W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685168", "pmid": "34297922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics suggest diverse mechanisms for response to biologic therapies in IBD"}]}, "tan x": {"display": "Tan X", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB24652", "pmid": "35876474", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Tea (Camellia sinensis) microbiomes (PRJCA007800)"}, {"acc": "PRJDB29030", "pmid": "38338730", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lettuce Microbiome (PRJCA018891)"}]}, "tan y": {"display": "Tan Y", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB23524", "pmid": "38868710", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS data from FMT trial for the treatment of recurrent Clostridium difficile infection"}, {"acc": "PRJEB6456", "pmid": "38868710", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA285502", "pmid": "38868710", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota transplantation (FMT) for ulcerative colitis"}, {"acc": "PRJNA625520", "pmid": "38868710", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Linking strain engraftment in fecal microbiota transplantation with maintenance of remiss…"}]}, "tan z": {"display": "Tan Z", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA656389", "pmid": "38365259", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of the digestive tract of buffalo"}, {"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}, {"acc": "PRJNA657455", "pmid": "38365259", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}]}, "tanca a": {"display": "Tanca A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB19090", "pmid": "27671352", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}]}, "tancredi dj": {"display": "Tancredi DJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15633", "pmid": "35406036", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}]}, "tandon s": {"display": "Tandon S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "tandukar s": {"display": "Tandukar S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB49206", "pmid": "30439937", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}]}, "tanegashima t": {"display": "Tanegashima T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "tanes c": {"display": "Tanes C", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1042647", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1106565", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA893635", "pmid": "36361763", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}, {"acc": "PRJNA893635", "pmid": "37297350", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}]}, "tanes ce": {"display": "Tanes CE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "tang a": {"display": "Tang A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "tang c": {"display": "Tang C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961698", "pmid": "37610205", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Very Early Life Microbiome and Metabolome Correlates with Primary Vaccination Variability…"}]}, "tang cy": {"display": "Tang CY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA683873", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Severe acute respiratory syndrome coronavirus 2 Genome sequencing"}]}, "tang h": {"display": "Tang H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA810575", "pmid": "36419187", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes of maternal and infant faecal samples"}]}, "tang j": {"display": "Tang J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA478018", "pmid": "38826395", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The unexplored social language of bacteria in human oral health and disease"}]}, "tang k": {"display": "Tang K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA876377", "pmid": "37007478", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soil microbiome of grassland bulk soil Metagenome"}]}, "tang ky": {"display": "Tang KY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA539906", "pmid": "31708889", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Chinese alligator gut metagenome"}]}, "tang m": {"display": "Tang M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884688", "pmid": "36778973", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiota and protein source"}]}, "tang p": {"display": "Tang P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "20143943", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}, {"acc": "PRJNA171119", "pmid": "20976137", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "tang r": {"display": "Tang R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}, {"acc": "PRJNA497801", "pmid": "31701197", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "bovine fecal metagenome"}]}, "tang w": {"display": "Tang W", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA353598", "pmid": "28539351", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA504921", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA506811", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "HUMAN GUT RECTAL BACTERIA Metagenome"}, {"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}]}, "tang x": {"display": "Tang X", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA524703", "pmid": "36659812", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA525517", "pmid": "30975748", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Klebsiella and Providencia notch a tag-team victory in a battle royale of oral bacteria"}]}, "taniguchi c": {"display": "Taniguchi C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "taniguchi h": {"display": "Taniguchi H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB7462", "pmid": "25080337", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The genomic analysis of an unclutured bacterium IOLA detected from a patient with chronic…"}]}, "tanino a": {"display": "Tanino A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB15258", "pmid": "38265980", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of 7,000 to 5,500 years old coprolites excavated from the Torihama s…"}]}, "tannis a": {"display": "Tannis A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}, {"acc": "PRJNA1195144", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "tanoue t": {"display": "Tanoue T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}]}, "tansirichaiya s": {"display": "Tansirichaiya S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1018099", "pmid": "38938117", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Cell-Lysis Treatment Prior to Saliva Metagenomic DNA Extraction on the Oral Mic…"}]}, "tantitham c": {"display": "Tantitham C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA966136", "pmid": "38548910", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Vaginal microbiome in women with breast cancer after receiving AI"}]}, "tao gz": {"display": "Tao GZ", "group": false, "n_studies": 7, "studies": [{"acc": "PRJNA273761", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA327106", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA396794", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA63661", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "tao jz": {"display": "Tao JZ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB57970", "pmid": "36816587", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "CCU infection"}]}, "tao s": {"display": "Tao S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA775062", "pmid": "35913177", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Landscapes of bacterial, viral and metabolic signatures and their interaction in early-we…"}, {"acc": "PRJNA847006", "pmid": "37049457", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA847006", "pmid": "37280255", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA847017", "pmid": "37280255", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads of GF mice"}]}, "tao y": {"display": "Tao Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}]}, "taouk ml": {"display": "Taouk ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "tap j": {"display": "Tap J", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}, {"acc": "PRJEB34992", "pmid": "33771219", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet and gut microbiome interactions of relevance for symptoms in irritable bowel syndrome"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}]}, "tapiainen t": {"display": "Tapiainen T", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB29078", "pmid": "37874156", "pos": "last", "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA296814", "pmid": "37874156", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA322188", "pmid": "37874156", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA543520", "pmid": "31337807", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "32239170", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}]}, "taracchini c": {"display": "Taracchini C", "group": false, "n_studies": 16, "studies": [{"acc": "PRJEB12669", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB24771", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB32135", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA287207", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA322188", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA339914", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA473126", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA524703", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA549787", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA557731", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA715615", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural infant gut microbiota"}]}, "tarallo s": {"display": "Tarallo S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "tarara rp": {"display": "Tarara RP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "21779173", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "tarassishin l": {"display": "Tarassishin L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39474439", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "tarr pi": {"display": "Tarr PI", "group": false, "n_studies": 11, "studies": [{"acc": "PRJNA1060349", "pmid": "40175737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Weaning accelerates and transforms within-host adaptation in the infant gut microbiome"}, {"acc": "PRJNA1148144", "pmid": "40128855", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Biosignatures of late-onset extraintestinal bacterial infections"}, {"acc": "PRJNA215106", "pmid": "24236055", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA301903", "pmid": "27572443", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA301903", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA46337", "pmid": "28274256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA473126", "pmid": "30374198", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA701982", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic-driven intestinal dysbiosis in paediatric SBS alters microbiome functions and…"}, {"acc": "PRJNA884103", "pmid": "37134153", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}, {"acc": "PRJNA911205", "pmid": "37726348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Psychosocial adversity experienced in utero and early life is associated with variation i…"}, {"acc": "PRJNA938144", "pmid": "37754563", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HOLA gut microbiome"}]}, "tarracchini c": {"display": "Tarracchini C", "group": false, "n_studies": 241, "studies": [{"acc": "PRJDB4176", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJDB4525", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics of fecal bacterial consortium inhabiting healthy Asian children"}, {"acc": "PRJEB10878", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB11419", "pmid": "33005310", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJEB11419", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJEB11532", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}, {"acc": "PRJEB1220", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB1220", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB1220", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB14935", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Term and preterm shotgun samples"}, {"acc": "PRJEB15257", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB15371", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB15633", "pmid": "33005310", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJEB1690", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB17784", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The fecal microbiota in L-DOPA naive PD patients"}, {"acc": "PRJEB1786", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB18755", "pmid": "36177457", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Connections between the gut microbiome and gestational diabetes mellitus"}, {"acc": "PRJEB19090", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}, {"acc": "PRJEB20800", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut resistome modulates resilience and recovery of gut microbiota after broad-spectrum an…"}, {"acc": "PRJEB21528", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB21528", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB23662", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A novel affordable reagent for room temperature storage and transport of fecal samples fo…"}, {"acc": "PRJEB24006", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24557", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Alterations of the intestinal microbiome in patients with retinal artery occlusion"}, {"acc": "PRJEB24771", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB25514", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A cross-sectional study of compositional and functional profiles of gut microbiota in Sar…"}, {"acc": "PRJEB26795", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB27005", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27005", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27005", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27928", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB27928", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB28338", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Influence of travel on the gut microbiome of cricketers"}, {"acc": "PRJEB28687", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "U.S. immigration westernizes the human gut microbiome"}, {"acc": "PRJEB28687", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "U.S. immigration westernizes the human gut microbiome"}, {"acc": "PRJEB29052", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29052", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29127", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB29127", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB30834", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30834", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30834", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30924", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Comparative analysis of amplicon and metagenomic sequencing methods reveals key features…"}, {"acc": "PRJEB32135", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32631", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "39287373", "pos": "first", "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB32794", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Distinct microbiome composition and metabolome exists across subgroups of elite Irish ath…"}, {"acc": "PRJEB32794", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Distinct microbiome composition and metabolome exists across subgroups of elite Irish ath…"}, {"acc": "PRJEB33013", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB33098", "pmid": "36177457", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB33098", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB35615", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Associations between the intestinal microbiome and the complement system in age-related m…"}, {"acc": "PRJEB36820", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB37731", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB38528", "pmid": "38441032", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB38528", "pmid": "39287373", "pos": "first", "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB39610", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39610", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39610", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39813", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenomic study of the oral (saliva) and Gut (stool) microbiome in subjects with Croh…"}, {"acc": "PRJEB41102", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB41102", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB41463", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB42013", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Non-invasive, robust and specific fecal microbiota-based screening for the early detectio…"}, {"acc": "PRJEB42363", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB42363", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB4336", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB44737", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB44737", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB46788", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB46788", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB6070", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6070", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6070", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6092", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "metagenome fecal microbiota, Ilumina seq reads of 12 individuals at 2 timepoints"}, {"acc": "PRJEB6456", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6997", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut and Oral Microbiome Dysbiosis in Rheumatoid Arthritis"}, {"acc": "PRJEB7774", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB7774", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB7774", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB8094", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB8347", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJEB9150", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbial succession follows acute secretory diarrhea in humans"}, {"acc": "PRJEB9150", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbial succession follows acute secretory diarrhea in humans"}, {"acc": "PRJEB9576", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA1046438", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA1046438", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA188481", "pmid": "36177457", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA215106", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA221723", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA231909", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA268964", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "34704805", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA275349", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA278393", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA278393", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA287207", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA289586", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA290380", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA297252", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal microbiota dynamics in hospitalized patients"}, {"acc": "PRJNA299502", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA301903", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA305507", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA305507", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA307231", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA317435", "pmid": "36177457", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "ImMicroDyn"}, {"acc": "PRJNA319574", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA320015", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Technical validation of ethanol fixation on stool canine and infant metagenomes"}, {"acc": "PRJNA321218", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA321218", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA322188", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA324129", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human fecal microbiome before and after consumption of AH1206 - Raw sequence reads"}, {"acc": "PRJNA324672", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA327106", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA331138", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of Italian metagenome"}, {"acc": "PRJNA336518", "pmid": "36123315", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA339012", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics analysis of donor and recepient samples from fecal transplant for Recurrent…"}, {"acc": "PRJNA339914", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA340216", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota and metagenomic diversity of omnivore, vegetarian and vegan healthy subjec…"}, {"acc": "PRJNA345144", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA360177", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA360177", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA362284", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA371647", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Raw sequence reads"}, {"acc": "PRJNA373879", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Healthy human fecal metagenomes variably reactivate Irinotecan active metabolite"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379741", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "MECFS metagenomics"}, {"acc": "PRJNA380118", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA382011", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics-Guided Pathogen Discovery in Travelers' Diarrhea"}, {"acc": "PRJNA384716", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA386422", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA386422", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA386422", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA389927", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Viral and Bacterial Communities of Colorectal Cancer"}, {"acc": "PRJNA390646", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA392180", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA396794", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA397219", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA400072", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA400072", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA400072", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA401385", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA401385", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA401385", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA412411", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA413160", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenome data from infant stools samples raw sequence reads"}, {"acc": "PRJNA413162", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenome data from infant (PD and ProD) stools samples raw sequence reads"}, {"acc": "PRJNA414479", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Total lipopolysaccharide from the human gut microbiome silences toll-like receptor signal…"}, {"acc": "PRJNA417343", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y5 Cohort)"}, {"acc": "PRJNA418941", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota functionality of healthy controls and individuals with kidney stones"}, {"acc": "PRJNA421881", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA422434", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422569", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA428202", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "healthy human gut metagenomics"}, {"acc": "PRJNA431482", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA431482", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA433459", "pmid": "36177457", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "gut metagenome Metagenome"}, {"acc": "PRJNA436562", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA438847", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA438847", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA438847", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA445968", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA449784", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA449784", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA472785", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Gut Microbiome Metagenomic Sequencing"}, {"acc": "PRJNA473126", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA482729", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of native and acetylated high amylose maize starch on fecal pH, short chain fatty…"}, {"acc": "PRJNA485056", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA486782", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486795", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Modification of gut microbiota-bile acid-intestinal FXR signaling leads to the clinical b…"}, {"acc": "PRJNA487305", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Effects of non-nutritive sweeteners on the composition of the human gut microbiome"}, {"acc": "PRJNA489090", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489693", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA489693", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA492716", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA497734", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA499081", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}, {"acc": "PRJNA503909", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA503909", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA509512", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiota changes are associated with acquisition of antibiotic resistant genes among in…"}, {"acc": "PRJNA517801", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS_Liver_disease"}, {"acc": "PRJNA518912", "pmid": "36123315", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA521587", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521587", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521878", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA521878", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA527208", "pmid": "36177457", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA527208", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA527208", "pmid": "39287373", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA529124", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529230", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "n of 1 study: Fecal Microbiota Transplantation in Multiple Sclerosis"}, {"acc": "PRJNA531203", "pmid": "36177457", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531203", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531203", "pmid": "39287373", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531316", "pmid": "39287373", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "CARBEPAD"}, {"acc": "PRJNA532310", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut metagenome"}, {"acc": "PRJNA532538", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome of the gut microbiota in multiple system atrophy patients"}, {"acc": "PRJNA542703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA544527", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA547591", "pmid": "36177457", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547591", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547591", "pmid": "39287373", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547717", "pmid": "36123315", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "human oral metagenome Raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA553191", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA553191", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA553191", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA555020", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA557731", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA562600", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Multi-omic analysis of Clostridioides difficile infection and response to therapy in pedi…"}, {"acc": "PRJNA562766", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA573963", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut Microbiome of Elderly Adults with Advanced Dementia"}, {"acc": "PRJNA588513", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA588513", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA588513", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA589622", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Underfeeding and oral vancomycin perturb the human gut microbiome and impair nutrient abs…"}, {"acc": "PRJNA589622", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Underfeeding and oral vancomycin perturb the human gut microbiome and impair nutrient abs…"}, {"acc": "PRJNA589866", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA594393", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to FOS intake"}, {"acc": "PRJNA594610", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to PDX intake"}, {"acc": "PRJNA594613", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to FOS intake followed by PDX intake"}, {"acc": "PRJNA594620", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to PDX intake followed by FOS intake"}, {"acc": "PRJNA597839", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota, visceral fat and sleeve gastrectomy"}, {"acc": "PRJNA598446", "pmid": "39287373", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A Novel Index for Predicting Health Status Using Species-level Gut Microbiome Profiling"}, {"acc": "PRJNA606198", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Comparison of methods to collect fecal samples for microbiome studies using whole-genome…"}, {"acc": "PRJNA613834", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Functional Microbial Responses to Alcohol Abstinence in Patients with Alcohol Use Disorder"}, {"acc": "PRJNA615162", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615162", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615842", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}, {"acc": "PRJNA624223", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624223", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624223", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624763", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA624763", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA624763", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA626004", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics Fecal Microbiome Dysbiosis in Parkinsons Disease"}, {"acc": "PRJNA628604", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}, {"acc": "PRJNA629392", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}, {"acc": "PRJNA630999", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA633576", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA634145", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA63661", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA637175", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}, {"acc": "PRJNA637878", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA637878", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA644725", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA644725", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA644725", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA648487", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA648487", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA649316", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Hi-C and metagenomic sequencing of neutropenic patient microbiomes"}, {"acc": "PRJNA650244", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with COVID-19"}, {"acc": "PRJNA658422", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "gut microbiome shifts associated with Henoch-Schonlein purpura"}, {"acc": "PRJNA663646", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "External validation cohorts for CRC-SNP analysis"}, {"acc": "PRJNA664544", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut microbes Metagenome"}, {"acc": "PRJNA665061", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665061", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665854", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS of feces and saliva of pancreatic cancer patients"}, {"acc": "PRJNA672867", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effectiveness of Fecal Microbiota Transplant together with PD-1 blockade in overcoming re…"}, {"acc": "PRJNA678426", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes."}, {"acc": "PRJNA678454", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of stool samples from two South African cohorts"}, {"acc": "PRJNA679346", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA679346", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA679346", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA685797", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The Influence of the gut microbiome on BCG-induced trained immunity"}, {"acc": "PRJNA686265", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-mediated metabolism effects on immunity in rural and urban African populat…"}, {"acc": "PRJNA686821", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics data from human stool microorganism Raw sequence reads"}, {"acc": "PRJNA687536", "pmid": "36177457", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA687536", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA687536", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA688164", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688164", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688164", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688274", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA688881", "pmid": "36177457", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Metagenome-wide association study of gut microbiome revealed potential etiology of Pediat…"}, {"acc": "PRJNA692830", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole genome metagenomic analysis of the gut microbiome in HIV-1 infected individuals on…"}, {"acc": "PRJNA695570", "pmid": "36177457", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA698773", "pmid": "33973321", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA698986", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA699281", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The microbiome of aging: instability, heterogeneity, and pathogenicity reservoirs in the…"}, {"acc": "PRJNA705895", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA714678", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA714678", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA730640", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA730640", "pmid": "39287373", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}, {"acc": "PRJNA742740", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiota of Kidney Stone patients and live-in partners"}, {"acc": "PRJNA750475", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Longitudinal Analysis of Gut Microbiome among healthy women"}, {"acc": "PRJNA752006", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing to Examine the Gut Microbiome in Konzo"}, {"acc": "PRJNA762543", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA762543", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA763503", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Character of microbial engraftment following the fecal microbiota transplantation in pati…"}, {"acc": "PRJNA772518", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA772518", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA772518", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA782810", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Exploring the species-level infant gut bacterial biodiversity through a meta-analysis and…"}, {"acc": "PRJNA788972", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Interactions between human gut microbiome dynamics and sub-optimal health symptoms during…"}, {"acc": "PRJNA832909", "pmid": "39287373", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}, {"acc": "PRJNA833139", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gender-specific cross-generational microbial persistence of human gut microbes"}, {"acc": "PRJNA845806", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Trial of Diet in Gestational Diabetes Mellitus: Metabolic Consequences to Mother and Offs…"}, {"acc": "PRJNA975734", "pmid": "37728335", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Disentangling the interactions between nasopharyngeal and gut microbiome and their involv…"}, {"acc": "PRJNA991269", "pmid": "41350579", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "tartera c": {"display": "Tartera C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA336518", "pmid": "29954907", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA336518", "pmid": "29954914", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA336518", "pmid": "35023776", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA336518", "pmid": "35616377", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}]}, "tataru c": {"display": "Tataru C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "34666677", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": "37938270", "pos": "first", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": null, "pos": "first", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "tateo s": {"display": "Tateo S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}]}, "tato c": {"display": "Tato C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019500", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}]}, "tatti a": {"display": "Tatti A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}]}, "tatusov rl": {"display": "Tatusov RL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27927929", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "taur y": {"display": "Taur Y", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA259179", "pmid": "25337874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Studies of intestinal microbiome and infection resistance"}, {"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}, {"acc": "PRJNA445968", "pmid": "28883399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "taurino g": {"display": "Taurino G", "group": false, "n_studies": 106, "studies": [{"acc": "PRJDB4176", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB12669", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB17784", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The fecal microbiota in L-DOPA naive PD patients"}, {"acc": "PRJEB1786", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB21528", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB23662", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A novel affordable reagent for room temperature storage and transport of fecal samples fo…"}, {"acc": "PRJEB24557", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Alterations of the intestinal microbiome in patients with retinal artery occlusion"}, {"acc": "PRJEB24771", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB25514", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A cross-sectional study of compositional and functional profiles of gut microbiota in Sar…"}, {"acc": "PRJEB28338", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Influence of travel on the gut microbiome of cricketers"}, {"acc": "PRJEB30924", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Comparative analysis of amplicon and metagenomic sequencing methods reveals key features…"}, {"acc": "PRJEB32135", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB33013", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB35615", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Associations between the intestinal microbiome and the complement system in age-related m…"}, {"acc": "PRJEB36820", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB39813", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenomic study of the oral (saliva) and Gut (stool) microbiome in subjects with Croh…"}, {"acc": "PRJEB44737", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB6092", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "metagenome fecal microbiota, Ilumina seq reads of 12 individuals at 2 timepoints"}, {"acc": "PRJEB6456", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB8347", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJEB9576", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA272371", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA287207", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA319574", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA321218", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA321218", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA322188", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA324129", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human fecal microbiome before and after consumption of AH1206 - Raw sequence reads"}, {"acc": "PRJNA324672", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA331138", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of Italian metagenome"}, {"acc": "PRJNA336518", "pmid": "36123315", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA339012", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics analysis of donor and recepient samples from fecal transplant for Recurrent…"}, {"acc": "PRJNA340216", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota and metagenomic diversity of omnivore, vegetarian and vegan healthy subjec…"}, {"acc": "PRJNA345144", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA360177", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA362284", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA371647", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Raw sequence reads"}, {"acc": "PRJNA373879", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Healthy human fecal metagenomes variably reactivate Irinotecan active metabolite"}, {"acc": "PRJNA379741", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "MECFS metagenomics"}, {"acc": "PRJNA382011", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics-Guided Pathogen Discovery in Travelers' Diarrhea"}, {"acc": "PRJNA384716", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA389927", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Viral and Bacterial Communities of Colorectal Cancer"}, {"acc": "PRJNA397219", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA412411", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA414479", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Total lipopolysaccharide from the human gut microbiome silences toll-like receptor signal…"}, {"acc": "PRJNA418941", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota functionality of healthy controls and individuals with kidney stones"}, {"acc": "PRJNA421881", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA422434", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422569", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA428202", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "healthy human gut metagenomics"}, {"acc": "PRJNA431482", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA449784", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA482729", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of native and acetylated high amylose maize starch on fecal pH, short chain fatty…"}, {"acc": "PRJNA485056", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA486795", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Modification of gut microbiota-bile acid-intestinal FXR signaling leads to the clinical b…"}, {"acc": "PRJNA487305", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Effects of non-nutritive sweeteners on the composition of the human gut microbiome"}, {"acc": "PRJNA492716", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA499081", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}, {"acc": "PRJNA503909", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA509512", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiota changes are associated with acquisition of antibiotic resistant genes among in…"}, {"acc": "PRJNA518912", "pmid": "36123315", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA521587", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA524703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA529124", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA532538", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome of the gut microbiota in multiple system atrophy patients"}, {"acc": "PRJNA542703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA547717", "pmid": "36123315", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "human oral metagenome Raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA557731", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA562766", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA597839", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota, visceral fat and sleeve gastrectomy"}, {"acc": "PRJNA613834", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Functional Microbial Responses to Alcohol Abstinence in Patients with Alcohol Use Disorder"}, {"acc": "PRJNA615162", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615842", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}, {"acc": "PRJNA626004", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics Fecal Microbiome Dysbiosis in Parkinsons Disease"}, {"acc": "PRJNA628604", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}, {"acc": "PRJNA634145", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA637175", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}, {"acc": "PRJNA637878", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA637878", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA649316", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Hi-C and metagenomic sequencing of neutropenic patient microbiomes"}, {"acc": "PRJNA663646", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "External validation cohorts for CRC-SNP analysis"}, {"acc": "PRJNA664544", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut microbes Metagenome"}, {"acc": "PRJNA665061", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665854", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS of feces and saliva of pancreatic cancer patients"}, {"acc": "PRJNA678426", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes."}, {"acc": "PRJNA678454", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of stool samples from two South African cohorts"}, {"acc": "PRJNA679346", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA685797", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The Influence of the gut microbiome on BCG-induced trained immunity"}, {"acc": "PRJNA686265", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-mediated metabolism effects on immunity in rural and urban African populat…"}, {"acc": "PRJNA692830", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole genome metagenomic analysis of the gut microbiome in HIV-1 infected individuals on…"}, {"acc": "PRJNA698986", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA705895", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA714678", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA742740", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiota of Kidney Stone patients and live-in partners"}, {"acc": "PRJNA750475", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Longitudinal Analysis of Gut Microbiome among healthy women"}, {"acc": "PRJNA762543", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA763503", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Character of microbial engraftment following the fecal microbiota transplantation in pati…"}, {"acc": "PRJNA772518", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA975734", "pmid": "37728335", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Disentangling the interactions between nasopharyngeal and gut microbiome and their involv…"}]}, "tavares m": {"display": "Tavares M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "tavella t": {"display": "Tavella T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA877820", "pmid": "32209716", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "tavengwa n": {"display": "Tavengwa N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "39341154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "tavengwa nv": {"display": "Tavengwa NV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "tawbi ha": {"display": "Tawbi HA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "tawk c": {"display": "Tawk C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1115039", "pmid": "39673707", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary selective effects manifest in the human gut microbiota from species composition t…"}]}, "tay cjx": {"display": "Tay CJX", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "tay e": {"display": "Tay E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "taylor gm": {"display": "Taylor GM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "taylor lj": {"display": "Taylor LJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA451186", "pmid": "30376898", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Placenta Microbiome"}]}, "taylor mw": {"display": "Taylor MW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA381379", "pmid": "29802288", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut metagenome the kakapo"}]}, "taylor sl": {"display": "Taylor SL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA503909", "pmid": "33074097", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "taylor sm": {"display": "Taylor SM", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB10057", "pmid": "26180832", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Variation in the Microbiota of Ixodes ticks with geography, species and sex"}, {"acc": "PRJEB10073", "pmid": "26180832", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Variation in the Microbiota of Ixodes ticks with geography, species and sex illumina"}, {"acc": "PRJNA503909", "pmid": "33074097", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}]}, "taylor t": {"display": "Taylor T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA80601", "pmid": "23554892", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterization of the nasopharyngeal virome in patients with influenza-like illness of…"}]}, "tazi a": {"display": "Tazi A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB77434", "pmid": "37271782", "pos": null, "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Vaginal Microbiota Dynamics in Pregnancy"}]}, "tchan m": {"display": "Tchan M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA786382", "pmid": "35245110", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable ta…"}]}, "tcheremissinoff y": {"display": "Tchérémissinoff Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41240", "pmid": "33434506", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Heterogeneous hunter-gatherer and steppe-related ancestries in Late Neolithic and Bell Be…"}]}, "te groen m": {"display": "Te Groen M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87602", "pmid": "37243505", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteria in colitis associated cancer development"}]}, "tecos me": {"display": "Tecos ME", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA301903", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA701982", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic-driven intestinal dysbiosis in paediatric SBS alters microbiome functions and…"}]}, "teh jj": {"display": "Teh JJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA715634", "pmid": "34035441", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Novel Strain Level Resolution of Crohns Disease Mucosa-Associated Microbiota via an ex vi…"}]}, "teichmann l": {"display": "Teichmann L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA706606", "pmid": "36416733", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of Water Chlorination of Children's Gut Microbiomes in Bangladesh"}, {"acc": "PRJNA726052", "pmid": "35422497", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effects of drinking water chlorination on childrens intestinal flora and resistomes in Dh…"}]}, "teig n": {"display": "Teig N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "tejesvi mv": {"display": "Tejesvi MV", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB29078", "pmid": "37874156", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA296814", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA322188", "pmid": "37874156", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA543520", "pmid": "31337807", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "32239170", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}]}, "tekin n": {"display": "Tekin N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26810", "pmid": "34071061", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}, {"acc": "PRJEB26810", "pmid": "38257101", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}]}, "teles f": {"display": "Teles F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA930375", "pmid": "37264481", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Addition of cariogenic pathogens to complex oral microbiota drives significant changes in…"}]}, "telleus gk": {"display": "Telléus GK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}]}, "tellez-rojo mm": {"display": "Téllez-Rojo MM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39474439", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}, {"acc": "PRJNA975184", "pmid": "39640590", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "templeton aa": {"display": "Templeton AA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA259274", "pmid": "25568281", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Wake Forest Vervet Microbiome Project"}]}, "tenaillon o": {"display": "Tenaillon O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "teneberg s": {"display": "Teneberg S", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB6456", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB97976", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome maturation during weaning"}, {"acc": "PRJEB97980", "pmid": "42203770", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential impact of doxycycline treatment on antimicrobial resistance genes in the enteri…"}, {"acc": "PRJEB98012", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Creeping Fat"}, {"acc": "PRJEB98069", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Distinct Microbial and Resistome Signatures Differentiate Healthy and Inflamed Ileal Pouc…"}]}, "tenenhaus a": {"display": "Tenenhaus A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA478488", "pmid": "32591010", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Chinese human skin metagenome"}]}, "teng aa": {"display": "Teng AA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1320699", "pmid": "42088498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "16S sequencing of infant stool Metagenome"}]}, "teng f": {"display": "Teng F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA602729", "pmid": "37905808", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}]}, "teng jll": {"display": "Teng JLL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA421859", "pmid": "29886344", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sichuan takin Metagenome"}]}, "teng y": {"display": "Teng Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "tenvooren i": {"display": "Tenvooren I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "teofilo e": {"display": "Teófilo E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "teoh oh": {"display": "Teoh OH", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "terdiman jp": {"display": "Terdiman JP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": "35365713", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}, {"acc": "PRJNA737472", "pmid": null, "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "terefe y": {"display": "Terefe Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "32351922", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "33553097", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "terentyeva d": {"display": "Terentyeva D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1061168", "pmid": "38440790", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Excess fermentation and lactic acidosis as detrimental functions of the gut microbes in t…"}]}, "ternes p": {"display": "Ternes P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1013332", "pmid": "38206014", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Scalp microbiome study"}]}, "ternhag a": {"display": "Ternhag A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB64634", "pmid": "32067542", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Fatal encephalitis associated with coronavirus OC43 in an immunocompromised child"}]}, "terrapon n": {"display": "Terrapon N", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}]}, "terveer em": {"display": "Terveer EM", "group": false, "n_studies": 12, "studies": [{"acc": "PRJDB4176", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1690", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB21528", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB22893", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome impacts response to PD-1 immunotherapy in melanoma patients"}, {"acc": "PRJEB27005", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB39223", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB44737", "pmid": "34126062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB44737", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJNA1071720", "pmid": "38572716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FECBUD Study Fecal Metagenomes"}, {"acc": "PRJNA1121295", "pmid": "38964511", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FEDEX Study Fecal Metagenomes"}, {"acc": "PRJNA231909", "pmid": "39885121", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "39885121", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA48479", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "tesfamariam k": {"display": "Tesfamariam K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1113165", "pmid": "40102379", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}]}, "teshima t": {"display": "Teshima T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "tessier v": {"display": "Tessier V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB77434", "pmid": "37271782", "pos": null, "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Vaginal Microbiota Dynamics in Pregnancy"}]}, "tessman b": {"display": "Teßman B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42185", "pmid": "34192537", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}]}, "tesson f": {"display": "Tesson F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45090", "pmid": "39665373", "pos": null, "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "ED Gut"}]}, "teta d": {"display": "Teta D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43505", "pmid": "34535959", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut barrier and microbiota changes with glycine and branched chain amino acids supplement…"}]}, "tetens i": {"display": "Tetens I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37731", "pmid": "39015337", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}]}, "tetsuka n": {"display": "Tetsuka N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10711", "pmid": "34090359", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics for pathogens detection from patients with fever of unknown origin"}]}, "tett a": {"display": "Tett A", "group": false, "n_studies": 15, "studies": [{"acc": "PRJEB15371", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA231909", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA287207", "pmid": "26231653", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA328899", "pmid": "30661755", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "28144631", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}, {"acc": "PRJNA48479", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA504891", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "tetzlaff mt": {"display": "Tetzlaff MT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "teufel a": {"display": "Teufel A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}]}, "teullet s": {"display": "Teullet S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA942254", "pmid": "37650612", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomics of fecal samples from ant-eating mammal species"}]}, "tewesa e": {"display": "Tewesa E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63570", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Klebsiella_transmission_and_immunity_on_Chatinkha_nursery__Neo_TRACK_"}]}, "thair s": {"display": "Thair S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "thakkar p": {"display": "Thakkar P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA297869", "pmid": "26614063", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human gastric microbiome metagenome"}]}, "thakku sg": {"display": "Thakku SG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA623215", "pmid": "32349121", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing to evaluate massively multiplexed detection with Cas13"}]}, "thalin t": {"display": "Thalin T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA795992", "pmid": "35336963", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenome of potential vectors (ticks, mosquitos, etc.)"}]}, "tham eh": {"display": "Tham EH", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "thampi s": {"display": "Thampi S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701480", "pmid": "34186487", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vaginal seeding in babies born by caesarean section (ECOBABe trial) - shotgun metagenomic…"}]}, "thanert a": {"display": "Thänert A", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1060349", "pmid": "40175737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Weaning accelerates and transforms within-host adaptation in the infant gut microbiome"}, {"acc": "PRJNA301903", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA701982", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic-driven intestinal dysbiosis in paediatric SBS alters microbiome functions and…"}]}, "thanert r": {"display": "Thänert R", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1060349", "pmid": "40175737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Weaning accelerates and transforms within-host adaptation in the infant gut microbiome"}, {"acc": "PRJNA301903", "pmid": "34264786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "34264786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "34264786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA701982", "pmid": "34264786", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic-driven intestinal dysbiosis in paediatric SBS alters microbiome functions and…"}]}, "theodossiev n": {"display": "Theodossiev N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}, {"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "theves c": {"display": "Thèves C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB41240", "pmid": "33434506", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Heterogeneous hunter-gatherer and steppe-related ancestries in Late Neolithic and Bell Be…"}]}, "thiebaut e": {"display": "Thiébaut E", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "thiel a": {"display": "Thiel A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "thielemann r": {"display": "Thielemann R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "thiess m": {"display": "Thieß M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15376", "pmid": "29067007", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome, metatranscriptome and exo-proteome analyses identify molecular keys and main…"}]}, "thijs c": {"display": "Thijs C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26795", "pmid": "30609941", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}]}, "thirion f": {"display": "Thirion F", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB43454", "pmid": "35151268", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Long-term diosmectite use does not alter the gut microbiota in adults with chronic diarrh…"}, {"acc": "PRJEB43611", "pmid": "35140493", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Changes in gut microbiota during balneotherapy"}, {"acc": "PRJEB48663", "pmid": "35311446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Increasing the diversity of dietary fibres in a daily-consumed bread modifies gut microbi…"}, {"acc": "PRJEB51635", "pmid": "36604748", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}, {"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}, {"acc": "PRJEB52431", "pmid": "36971547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In Vitro Modelling of Oral Microbial Invasion in the Human Colon"}, {"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}, {"acc": "PRJEB80549", "pmid": "41196055", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterisation of the forehead and armpit skin microbiome of healthy individuals using…"}, {"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "thoemmes ms": {"display": "Thoemmes MS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52147", "pmid": "35440708", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Association Between Milk Feedings in the Preterm Population, the Microbiome and Risk…"}]}, "thoendel mj": {"display": "Thoendel MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA518922", "pmid": "31577814", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metegenomic sequencing of blood from patients with vector-borne diseases"}]}, "tholey a": {"display": "Tholey A", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB15376", "pmid": "29067007", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome, metatranscriptome and exo-proteome analyses identify molecular keys and main…"}, {"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}, {"acc": "PRJEB42185", "pmid": "34192537", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}]}, "thomas am": {"display": "Thomas AM", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}, {"acc": "PRJNA504891", "pmid": "32427907", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA643802", "pmid": "32859933", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "FMT for diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal…"}]}, "thomas bc": {"display": "Thomas BC", "group": false, "n_studies": 12, "studies": [{"acc": "PRJNA215102", "pmid": "24451181", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant gut Metagenome"}, {"acc": "PRJNA221723", "pmid": "24468033", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "29180750", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA278302", "pmid": "26787827", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Alaska oil reservoir Metagenome"}, {"acc": "PRJNA294605", "pmid": "29180750", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA321218", "pmid": "24137540", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA321218", "pmid": "27819664", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA327106", "pmid": "28073918", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "29180750", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "29925423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376580", "pmid": "29180750", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hospital (NICU) surfaces and sinks"}, {"acc": "PRJNA60717", "pmid": "21191099", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomic analysis of infant stool sample"}, {"acc": "PRJNA61745", "pmid": "21191099", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Strain-resolved community genomic analysis of gut microbial colonization in a premature i…"}, {"acc": "PRJNA81851", "pmid": "22773627", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Hypersaline Lake Metagenome"}, {"acc": "PRJNA81851", "pmid": "23853523", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Hypersaline Lake Metagenome"}]}, "thomas k": {"display": "Thomas K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73590", "pmid": "38235427", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}]}, "thomas km": {"display": "Thomas KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73590", "pmid": "37111504", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}]}, "thomas pj": {"display": "Thomas PJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445389", "pmid": "30586509", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Sphingomonas koreensis Genome sequencing and assembly"}]}, "thomas s": {"display": "Thomas S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "thomas w": {"display": "Thomas W", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "thompson ce": {"display": "Thompson CE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA60545", "pmid": "24706600", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes isolated from NE Brazil"}]}, "thompson f": {"display": "Thompson F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA503909", "pmid": "33074097", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}]}, "thompson j": {"display": "Thompson J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA289925", "pmid": "26701081", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candidatus [Bacteroides] periocalifornicus isolate:12B Genome sequencing and assembly"}]}, "thompson k": {"display": "Thompson K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA642893", "pmid": "33212154", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Skin microbiome from cutaneous T-cell lymphoma patients and healthy volunteers"}]}, "thompson kn": {"display": "Thompson KN", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA398089", "pmid": "35614211", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "thompson lr": {"display": "Thompson LR", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA613381", "pmid": "32968071", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut…"}, {"acc": "PRJNA679730", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2018"}, {"acc": "PRJNA702522", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2019"}]}, "thompson mh": {"display": "Thompson MH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35337", "pmid": "11075884", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Analysis of freeze-dried faecal samples collected from individuals between 1974 and 1980"}]}, "thomson ca": {"display": "Thomson CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1055141", "pmid": "42336834", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool shallow shotgun sequencing (ANTIBIO)"}]}, "thomson ec": {"display": "Thomson EC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}]}, "thomson nr": {"display": "Thomson NR", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB21259", "pmid": "41144256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}, {"acc": "PRJEB63570", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Klebsiella_transmission_and_immunity_on_Chatinkha_nursery__Neo_TRACK_"}, {"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "thongbunrod n": {"display": "Thongbunrod N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA609587", "pmid": null, "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Buffalo rumen microbial community"}]}, "thorat v": {"display": "Thorat V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746290", "pmid": "35210415", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Circulating Microbiome in Myeloid Malignancy"}]}, "thornburg nj": {"display": "Thornburg NJ", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}, {"acc": "PRJNA1195144", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}, {"acc": "PRJNA322324", "pmid": "34673119", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "thornton ca": {"display": "Thornton CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB82926", "pmid": "40431157", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic Supplementation Impacts Gut Microbiota Development in Infants at Risk of Atopy:…"}]}, "thornton sf": {"display": "Thornton SF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB19676", "pmid": "26512868", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of microbes attached to fuel cell electrodes"}]}, "thorpe ha": {"display": "Thorpe HA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32631", "pmid": "36456554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "42032281", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB47909", "pmid": "42032281", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "FMT datasets of patients with recurrent Clostridioides difficile infection (rCDI), inflam…"}]}, "thorsen j": {"display": "Thorsen J", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40396485", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "41387423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA715601", "pmid": "38135681", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "38730321", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA916259", "pmid": "38135681", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}, {"acc": "PRJNA916259", "pmid": "40140473", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}]}, "thota j": {"display": "Thota J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47581", "pmid": "32423128", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic Analysis of Regularly Microwave-Treated and Untreated Domestic Kitchen Sponges"}]}, "thron t": {"display": "Thron T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB17694", "pmid": "27912057", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Di…"}]}, "thurimella k": {"display": "Thurimella K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA400072", "pmid": "41299229", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA615162", "pmid": "41299229", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA821542", "pmid": "41299229", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut metagenomes from mothers and their infants in the EDIA study"}]}, "thyagarajan b": {"display": "Thyagarajan B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1458854", "pmid": "42370707", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Validation of an Integrated Metagenomic Pipeline Combining Optimized Wet Lab Processing a…"}]}, "tian al": {"display": "Tian AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "tian f": {"display": "Tian F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": "38908894", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "tian m": {"display": "Tian M", "group": false, "n_studies": 18, "studies": [{"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJNA1081790", "pmid": "38838490", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Dongkemadi glacier"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "tian p": {"display": "Tian P", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1338803", "pmid": "41421358", "pos": "last", "reason_code": "host_synthetic", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of faecal fermentation in vitro"}, {"acc": "PRJNA422434", "pmid": "41421358", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA504891", "pmid": "37596617", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37596617", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "tian x": {"display": "Tian X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "tian y": {"display": "Tian Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "tian yp": {"display": "Tian YP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1428929", "pmid": "42022809", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota and Metabolome Signatures in Preterm Infants with High versus Low Risk for…"}]}, "tian z": {"display": "Tian Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA48479", "pmid": "38882493", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "ticinesi a": {"display": "Ticinesi A", "group": false, "n_studies": 73, "studies": [{"acc": "PRJEB10878", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB1220", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB26795", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB27005", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27928", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB29052", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29127", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB30834", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB33098", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB38528", "pmid": "38441032", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB39610", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB41102", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB46788", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB6070", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB7774", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJNA1046438", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA268964", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA289586", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA290380", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA307231", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA327106", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA345144", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA360177", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA379120", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA380118", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA386422", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA392180", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA397112", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA400072", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA401385", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA422434", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA431482", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA438847", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA445968", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA449784", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA503909", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA521587", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA527208", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA529124", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA531203", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA542703", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA547591", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA549787", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA553191", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA562600", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Multi-omic analysis of Clostridioides difficile infection and response to therapy in pedi…"}, {"acc": "PRJNA588513", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA624223", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624763", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA633576", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA644725", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA658422", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "gut microbiome shifts associated with Henoch-Schonlein purpura"}, {"acc": "PRJNA679346", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA687536", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA688164", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688274", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA695570", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA714678", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA752006", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing to Examine the Gut Microbiome in Konzo"}, {"acc": "PRJNA772518", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA975734", "pmid": "37728335", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Disentangling the interactions between nasopharyngeal and gut microbiome and their involv…"}]}, "tickell kd": {"display": "Tickell KD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "tiffany cr": {"display": "Tiffany CR", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1173239", "pmid": "40763731", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Amino acid competition shapes Acinetobacter baumannii gut carriage"}]}, "tiger-lc consortium": {"display": "TIGER-LC Consortium", "group": true, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "tighe s": {"display": "Tighe S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "tigoi c": {"display": "Tigoi C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "tijssen jg": {"display": "Tijssen JG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46777", "pmid": "25836986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Ulcerative Colitis."}]}, "tikhonova iv": {"display": "Tikhonova IV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA547700", "pmid": "31671744", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lake Baikal Viromes Raw sequence reads"}]}, "tilak m-k": {"display": "Tilak M-K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA942254", "pmid": "37650612", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomics of fecal samples from ant-eating mammal species"}]}, "tiliakou a": {"display": "Tiliakou A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "tilley dh": {"display": "Tilley DH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698223", "pmid": "36470885", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "TD Cusco travelers study"}]}, "tillmann v": {"display": "Tillmann V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "timko mp": {"display": "Timko MP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "timmins gs": {"display": "Timmins GS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "timms v": {"display": "Timms V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA595393", "pmid": "32108565", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Optimisation of sample preparation for culture-independent sequencing of Bordetella pertu…"}]}, "tims s": {"display": "Tims S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}]}, "tinker mt": {"display": "Tinker MT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726636", "pmid": "35382031", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sea otter (Enhydra lutris) Raw sequence reads"}]}, "tinta t": {"display": "Tinta T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB77875", "pmid": null, "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Seawater metagenomes collected during Jellyfish enrichment experiment"}, {"acc": "PRJEB85785", "pmid": "41437131", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Seawater Metagenomes from a Wastewater Exposure Experiment"}]}, "tintelnot j": {"display": "Tintelnot J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "tirera s": {"display": "Tirera S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA371487", "pmid": "28715422", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Leishmania RNA Virus Genomics'' study from French Guiana"}]}, "tirosh o": {"display": "Tirosh O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA471898", "pmid": "30397357", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The skin microbiome of DOCK8-deficient patients"}]}, "tisza mj": {"display": "Tisza MJ", "group": false, "n_studies": 24, "studies": [{"acc": "PRJEB13870", "pmid": "34083435", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Hypertension is one of the most prevalent cardiovascular diseases worldwide. Recent findi…"}, {"acc": "PRJEB1786", "pmid": "34083435", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB6456", "pmid": "34083435", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6997", "pmid": "34083435", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut and Oral Microbiome Dysbiosis in Rheumatoid Arthritis"}, {"acc": "PRJNA188481", "pmid": "34083435", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA268964", "pmid": "34083435", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "34083435", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA289586", "pmid": "34083435", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA290380", "pmid": "34083435", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA300541", "pmid": "34083435", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA327106", "pmid": "34083435", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA328899", "pmid": "34083435", "pos": "first", "reason_code": "site_unknown", "src": "B", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA354235", "pmid": "34083435", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut metagenome and metatranscriptome raw sequence reads."}, {"acc": "PRJNA416160", "pmid": "39856391", "pos": "first", "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "The Environmental Determinants of Diabetes in the Young (TEDDY) Parent Study"}, {"acc": "PRJNA422434", "pmid": "34083435", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA46333", "pmid": "34083435", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA48479", "pmid": "34083435", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "34083435", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA491626", "pmid": "34083435", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut virome of Cameroonians living in close proximity with bats"}, {"acc": "PRJNA504891", "pmid": "34083435", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504921", "pmid": "34083435", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA524703", "pmid": "34083435", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA545408", "pmid": "34083435", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Longitudinal study of the human gut virome"}, {"acc": "PRJNA63661", "pmid": "34083435", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "tito ry": {"display": "Tito RY", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}, {"acc": "PRJNA693793", "pmid": "35320047", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BaBel Infant Gut Virome Raw Data"}]}, "tkacz a": {"display": "Tkacz A", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "toapanta d": {"display": "Toapanta D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40200", "pmid": "32941879", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Rela…"}]}, "tobin nh": {"display": "Tobin NH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA836336", "pmid": "36179550", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenome of MSM prior to and following HIV seroconversion"}]}, "todd jd": {"display": "Todd JD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522699", "pmid": "31427729", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}]}, "todd oa": {"display": "Todd OA", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1173239", "pmid": "40763731", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Amino acid competition shapes Acinetobacter baumannii gut carriage"}]}, "todo k": {"display": "Todo K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "toe lc": {"display": "Toe LC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1113165", "pmid": "40102379", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}]}, "toepfer ap": {"display": "Toepfer AP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "tojo a": {"display": "Tojo A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "toker j": {"display": "Toker J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "tolaney sm": {"display": "Tolaney SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1295573", "pmid": "41760690", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The intestinal microbiome of patients with newly diagnosed invasive breast cancer and duc…"}]}, "tolias kf": {"display": "Tolias KF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}]}, "tolno f": {"display": "Tolno F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "tolno fm": {"display": "Tolno FM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "tolosana r": {"display": "Tolosana R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "tolosano m": {"display": "Tolosano M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA781406", "pmid": "35444202", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Vanishing Glaciers Project"}]}, "tom l": {"display": "Tom L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA278302", "pmid": "26787827", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Alaska oil reservoir Metagenome"}]}, "tomashek jj": {"display": "Tomashek JJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202388", "pmid": "25028422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "tomasic k": {"display": "Tomasic K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "tomasula pm": {"display": "Tomasula PM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893635", "pmid": "36361763", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}, {"acc": "PRJNA893635", "pmid": "37297350", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}]}, "tombline g": {"display": "Tombline G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "tome j": {"display": "Tome J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51728", "pmid": "36788215", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB51728", "pmid": "39341154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}]}, "tomela k": {"display": "Tomela K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA749919", "pmid": "35589762", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An optimized approach to the metagenomic population studies: from sample donation to comm…"}]}, "tominaga k": {"display": "Tominaga K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10879", "pmid": "36722950", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Seasonal dynamics of prokaryotes and viruses in Osaka bay"}]}, "tomita s": {"display": "Tomita S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11203", "pmid": "34069916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Taxonomic and gene category analysis of subgingival plaques with and without periodontal…"}]}, "tomita y": {"display": "Tomita Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB8125", "pmid": "31549291", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metaviromic analyses on crane fecal samples"}]}, "tomkins-tinch ch": {"display": "Tomkins-Tinch CH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "tomofuji y": {"display": "Tomofuji Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "tomoleoni ja": {"display": "Tomoleoni JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA726636", "pmid": "35382031", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sea otter (Enhydra lutris) Raw sequence reads"}]}, "tomonaga k": {"display": "Tomonaga K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB8125", "pmid": "31549291", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metaviromic analyses on crane fecal samples"}]}, "tomori o": {"display": "Tomori O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "tomsho l": {"display": "Tomsho L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1463324", "pmid": "41342324", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "VE202 phase 1 stool metagenomes"}]}, "tong j": {"display": "Tong J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB39536", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Large-scale single-cell long-read genomics enables high-resolution microbiome profiling (…"}]}, "tong l": {"display": "Tong L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}]}, "tong x": {"display": "Tong X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA478488", "pmid": "32591010", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Chinese human skin metagenome"}]}, "tonkin-hill g": {"display": "Tonkin-Hill G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32631", "pmid": "42032281", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB47909", "pmid": "42032281", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "FMT datasets of patients with recurrent Clostridioides difficile infection (rCDI), inflam…"}]}, "topal e": {"display": "Topal E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "topcuoglu bd": {"display": "Topçuoğlu BD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961698", "pmid": "37610205", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Very Early Life Microbiome and Metabolome Correlates with Primary Vaccination Variability…"}]}, "toppari j": {"display": "Toppari J", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA268964", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA392180", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA485056", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA497734", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "toppinen m": {"display": "Toppinen M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA924035", "pmid": "36951096", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Unmasking the Tissue-Resident Eukaryotic DNA virome in Humans"}]}, "toren k": {"display": "Toren K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "torii y": {"display": "Torii Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB10705", "pmid": "34859110", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Blood microbiome in febrile patients"}, {"acc": "PRJDB10711", "pmid": "34090359", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics for pathogens detection from patients with fever of unknown origin"}]}, "tormo r": {"display": "Tormo R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA949443", "pmid": "37175775", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Targeted Locus (Loci)"}]}, "tornblom h": {"display": "Törnblom H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB34992", "pmid": "33771219", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet and gut microbiome interactions of relevance for symptoms in irritable bowel syndrome"}]}, "torralba m": {"display": "Torralba M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA383868", "pmid": "28910633", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA383868", "pmid": "30482830", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA49397", "pmid": "20962874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Canine gastrointestinal metagenome"}]}, "torralba mg": {"display": "Torralba MG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA383868", "pmid": "32409670", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}]}, "torrell h": {"display": "Torrell H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA949443", "pmid": "37175775", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Targeted Locus (Loci)"}]}, "torres j": {"display": "Torres J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1258733", "pmid": "42127418", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Metagenome"}, {"acc": "PRJNA240141", "pmid": "25208077", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Elephant feces Metagenome"}, {"acc": "PRJNA592261", "pmid": "32788688", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "35196791", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "36650178", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}]}, "torres-olascoaga la": {"display": "Torres-Olascoaga LA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39474439", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}, {"acc": "PRJNA975184", "pmid": "39640590", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "torriani s": {"display": "Torriani S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746509", "pmid": "34946200", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota in an infant with propionic acidemia before and after probiotic supplement…"}]}, "tortora g": {"display": "Tortora G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA643802", "pmid": "32859933", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "FMT for diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal…"}]}, "torv m": {"display": "Tõrv M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42185", "pmid": "34192537", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}]}, "toso c": {"display": "Toso C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB20595", "pmid": "30065706", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hepatic brucelloma studied by next generation sequencing"}]}, "toth ag": {"display": "Tóth AG", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA591315", "pmid": "32366826", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "raw milk metagenome"}, {"acc": "PRJNA644779", "pmid": "33384459", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "yogurt and kefir seed culture sequencing"}]}, "toth g": {"display": "Tóth G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "touchon m": {"display": "Touchon M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58157", "pmid": "38468305", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Perturbation and resilience of the gut microbiome three months after β-lactams exposure i…"}]}, "tougeron d": {"display": "Tougeron D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB110927", "pmid": "39454892", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Durigast_F_prausnitzii_ICI_gastric_adenocarcinoma"}]}, "tourlousse dm": {"display": "Tourlousse DM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "toussaint nc": {"display": "Toussaint NC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA259179", "pmid": "25337874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Studies of intestinal microbiome and infection resistance"}]}, "townsend sd": {"display": "Townsend SD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA986525", "pmid": "38441000", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "2'-fucoysllactose treatment of C57BL/6 adult mice fecal metagenomics"}]}, "tozser d": {"display": "Tőzsér D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA591315", "pmid": "32366826", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "raw milk metagenome"}, {"acc": "PRJNA685398", "pmid": "36083885", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Honey bee gut microbiome"}]}, "trabelsi f": {"display": "Trabelsi F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762668", "pmid": "35547149", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal and comparative analysis of Tunisian newborns gut microbiota according to de…"}]}, "trachsel j": {"display": "Trachsel J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1206145", "pmid": "40898384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of the gut microbiome from infants enrolled in a randomized controlled…"}]}, "trager m": {"display": "Träger M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "trajkovic-arsic m": {"display": "Trajkovic-Arsic M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "trajkovski m": {"display": "Trajkovski M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43581", "pmid": "34737977", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}]}, "tramontano f": {"display": "Tramontano F", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "tran m": {"display": "Tran M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28935730", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "tran nc": {"display": "Tran NC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA624185", "pmid": "33239396", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Deep metagenomics examines the oral microbiome during advanced dental caries in children,…"}]}, "tran t": {"display": "Tran T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}, {"acc": "PRJNA338014", "pmid": "30383234", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "tranaes k": {"display": "Tranæs K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46943", "pmid": "41387423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}]}, "trano ac": {"display": "Trano AC", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "traore o": {"display": "Traoré O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "trebicka j": {"display": "Trebicka J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "trehan i": {"display": "Trehan I", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB9818", "pmid": "26351661", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The gut DNA viromes of Malawian twins discordant for severe acute undernutrition"}, {"acc": "PRJNA1355224", "pmid": "42037384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human metagenomic samples Metagenome"}, {"acc": "PRJNA549787", "pmid": "31832638", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA739008", "pmid": "37866373", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Effect of amoxicillin prophylaxis on gut microbiome and resistome for severe acute malnut…"}]}, "tremaroli v": {"display": "Tremaroli V", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "tremblay j": {"display": "Tremblay J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629517", "pmid": "34145447", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "DFO - beads in situ microcosms Raw sequence reads"}]}, "trenkwalder c": {"display": "Trenkwalder C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA381395", "pmid": "28843021", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut and nasal microbiome in Parkinson''s disease"}]}, "tressieres g": {"display": "Tressieres G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "treven p": {"display": "Treven P", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA203137", "pmid": "25059871", "pos": "first", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Lactobacillus paragasseri K7 strain:K7 Genome sequencing and assembly"}, {"acc": "PRJNA339914", "pmid": "36170451", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA343144", "pmid": "36170451", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome Metagenomic assembly"}, {"acc": "PRJNA400259", "pmid": "36170451", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human Milk Microbiome Metagenome"}, {"acc": "PRJNA524170", "pmid": "36170451", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Resistant microbiome underlies antibiotic therapy in pouchitis"}]}, "tribble dr": {"display": "Tribble DR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945408", "pmid": "38085102", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prev…"}]}, "trifanova sv": {"display": "Trifanova SV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "trigodet f": {"display": "Trigodet F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701961", "pmid": "37069665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA701961", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "trinchieri g": {"display": "Trinchieri G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "tripathi d": {"display": "Tripathi D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945262", "pmid": "37067419", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Gut Microbiome in a mother child paired design"}]}, "triplett ew": {"display": "Triplett EW", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA1095378", "pmid": "39373498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic resistance"}, {"acc": "PRJNA268964", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA392180", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA485056", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA497734", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "tripp ad": {"display": "Tripp AD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1052084", "pmid": "38260404", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intraspecies dynamics underlie the apparent stability of two important skin microbiome sp…"}, {"acc": "PRJNA1052084", "pmid": "40315837", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intraspecies dynamics underlie the apparent stability of two important skin microbiome sp…"}]}, "trivedi kk": {"display": "Trivedi KK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1261853", "pmid": "38816345", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia sp. CA6269 genome sequencing from clinical and environmental samples"}]}, "trivedi u": {"display": "Trivedi U", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB84944", "pmid": "40885737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of 56 mother-infant dyads from the ALADDIN birth cohort"}, {"acc": "PRJNA715601", "pmid": "38135681", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "38730321", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA916259", "pmid": "38135681", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}]}, "trmcic a": {"display": "Trmčić A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA203137", "pmid": "25059871", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Lactobacillus paragasseri K7 strain:K7 Genome sequencing and assembly"}]}, "troisi j": {"display": "Troisi J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "trombelli l": {"display": "Trombelli L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976261", "pmid": "31153098", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole metagenomic shotgun sequencing of the subgingival microbiome of diabetics and non-d…"}, {"acc": "PRJNA976261", "pmid": "37257865", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole metagenomic shotgun sequencing of the subgingival microbiome of diabetics and non-d…"}]}, "trommer m": {"display": "Trommer M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "trompetto m": {"display": "Trompetto M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "troncoso-corzo l": {"display": "Troncoso-Corzo L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}]}, "troncoso-rey p": {"display": "Troncoso-Rey P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA722408", "pmid": "36076058", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}, {"acc": "PRJNA722408", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}]}, "trosvik p": {"display": "Trosvik P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1085219", "pmid": "39134593", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance gene dynamics in the commensal infant gut microbiome over the first…"}]}, "troth t": {"display": "Troth T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945408", "pmid": "38085102", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prev…"}]}, "trottier s": {"display": "Trottier S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB8094", "pmid": "26359913", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}]}, "trovato cm": {"display": "Trovato CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "34253606", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "trujillo-villarroel o": {"display": "Trujillo-Villarroel O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}]}, "truntzer c": {"display": "Truntzer C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60621", "pmid": "37989857", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Is the oral microbiota implicated in taste perception? Investigation of saliva and tongue…"}]}, "truong dt": {"display": "Truong DT", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA339914", "pmid": "28144631", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "tsai hm": {"display": "Tsai HM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1236379", "pmid": "40886152", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Infant BBB"}]}, "tsai m": {"display": "Tsai M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}]}, "tsai sm": {"display": "Tsai SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA717815", "pmid": "35758687", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human salivary metagenome in health and disease"}, {"acc": "PRJNA717815", "pmid": "38376220", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human salivary metagenome in health and disease"}]}, "tsai wb": {"display": "Tsai WB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "tsakmaklis a": {"display": "Tsakmaklis A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "tsaliki e": {"display": "Tsaliki E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB32631", "pmid": "31534227", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}]}, "tsang cc": {"display": "Tsang CC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573821", "pmid": "32919472", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Whole Meta-genome shotgun sequencing of stool samples from human treated with antibiotics"}]}, "tsang dhl": {"display": "Tsang DHL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1151597", "pmid": "40405038", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Probiotics mixture suppresses MASLD-associated hepatocellular carcinoma"}]}, "tsang j": {"display": "Tsang J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "tschopp r": {"display": "Tschopp R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA300541", "pmid": "38049420", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "tse yk": {"display": "Tse YK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}]}, "tsiamis v": {"display": "Tsiamis V", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB6456", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB97976", "pmid": "42203770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome maturation during weaning"}, {"acc": "PRJEB97980", "pmid": "42203770", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential impact of doxycycline treatment on antimicrobial resistance genes in the enteri…"}, {"acc": "PRJEB98012", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Creeping Fat"}, {"acc": "PRJEB98069", "pmid": "42203770", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Distinct Microbial and Resistome Signatures Differentiate Healthy and Inflamed Ileal Pouc…"}]}, "tsitsiklis a": {"display": "Tsitsiklis A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782906", "pmid": "36266337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in cr…"}]}, "tskhay f": {"display": "Tskhay F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1262354", "pmid": "41603547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMBARK - Establishing a Monitoring Baseline for Antimicrobial Resistance in Key environme…"}]}, "tso l": {"display": "Tso L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA695570", "pmid": "34444993", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "tsuchiaka s": {"display": "Tsuchiaka S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB5383", "pmid": "28095784", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of a novel bovine enterovirus possessing highly divergent amino acid seque…"}]}, "tsuchida s": {"display": "Tsuchida S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB3819", "pmid": "26468217", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Novel probiotic bacteria retrieved from wild rock ptarmigans"}]}, "tsugawa h": {"display": "Tsugawa H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "tsuji t": {"display": "Tsuji T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "tsukayama p": {"display": "Tsukayama P", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA268964", "pmid": "27172044", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "27172044", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA802048", "pmid": "37882571", "pos": "last", "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Insights into the infant gut microbiome composition after bovine lactoferrin oral adminis…"}]}, "tsukuda n": {"display": "Tsukuda N", "group": false, "n_studies": 11, "studies": [{"acc": "PRJDB4176", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB17632", "pmid": "37188713", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Subspecies in the global human gut microbiome"}, {"acc": "PRJEB6070", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6456", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB7774", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJNA217052", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Fiji COMP"}, {"acc": "PRJNA268964", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA290380", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA485056", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}]}, "tu c": {"display": "Tu C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "tubach s": {"display": "Tubach S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28369502", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "tuck ot": {"display": "Tuck OT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21259", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}]}, "tukalenko e": {"display": "Tukalenko E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA613381", "pmid": "32968071", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut…"}]}, "tulchinsky h": {"display": "Tulchinsky H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA524170", "pmid": "31605691", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistant microbiome underlies antibiotic therapy in pouchitis"}]}, "tumes dj": {"display": "Tumes DJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "tummler b": {"display": "Tümmler B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB38221", "pmid": "33319812", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Airway metagenome of healthy infants and infants with cystic fibrosis"}, {"acc": "PRJEB52640", "pmid": "37474785", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Longitudinal development of the airway metagenome of preterm very low birth weight infant…"}]}, "tun hm": {"display": "Tun HM", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB52774", "pmid": "39591974", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}, {"acc": "PRJNA876804", "pmid": "36357381", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Human Metagenomic Metagenome"}]}, "tung j": {"display": "Tung J", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB29065", "pmid": "37158607", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Daily sampling reveals personalized diet-microbiome associations"}, {"acc": "PRJEB8347", "pmid": "42259839", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJNA1148144", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Biosignatures of late-onset extraintestinal bacterial infections"}, {"acc": "PRJNA290380", "pmid": "37158607", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA301903", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA48479", "pmid": "42259839", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA489090", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA799247", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA884103", "pmid": "42259839", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}]}, "tupikin ae": {"display": "Tupikin AE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA547700", "pmid": "31671744", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lake Baikal Viromes Raw sequence reads"}]}, "turabelidze g": {"display": "Turabelidze G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28369502", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "turaev d": {"display": "Turaev D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}, {"acc": "PRJNA240141", "pmid": "25208077", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "turenne cy": {"display": "Turenne CY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "30429252", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "turk v": {"display": "Turk V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85785", "pmid": "41437131", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Seawater Metagenomes from a Wastewater Exposure Experiment"}]}, "turks m": {"display": "Turks M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62817", "pmid": "38868903", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome encoded purine and amino acid pathways present prospective biomarkers for…"}]}, "turnbaugh ja": {"display": "Turnbaugh JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA412411", "pmid": "34163067", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}]}, "turnbaugh pj": {"display": "Turnbaugh PJ", "group": false, "n_studies": 7, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}, {"acc": "PRJNA17391", "pmid": "17183312", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut microbiome of lean mouse 1"}, {"acc": "PRJNA17397", "pmid": "17183312", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut microbiome of obese mouse 1"}, {"acc": "PRJNA32089", "pmid": "19043404", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}, {"acc": "PRJNA39859", "pmid": "20368178", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Analyses of the human gut microbiome after transplantation into germ-free mice"}, {"acc": "PRJNA412411", "pmid": "34163067", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA43253", "pmid": "20363958", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human fecal microbiome"}]}, "turner j": {"display": "Turner J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "turner ml": {"display": "Turner ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA46333", "pmid": "22310478", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}]}, "turner p": {"display": "Turner P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893826", "pmid": "38622998", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Culture-independent long read metagenomic diagnostics for genomic surveillance and infect…"}]}, "turner s": {"display": "Turner S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1080233", "pmid": "39214237", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Breathing Together severe wheeze and asthma cohort"}]}, "turner sd": {"display": "Turner SD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA812770", "pmid": null, "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Lake Erie eDNA HAB samples"}]}, "tuross n": {"display": "Tuross N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA205039", "pmid": "24568097", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Teposcolula Yucundaa, Oaxaca, Mexico Metagenome"}]}, "turroni f": {"display": "Turroni F", "group": false, "n_studies": 243, "studies": [{"acc": "PRJDB4176", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJDB4525", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics of fecal bacterial consortium inhabiting healthy Asian children"}, {"acc": "PRJEB10878", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB11419", "pmid": "33005310", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJEB11419", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJEB11532", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}, {"acc": "PRJEB1220", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB1220", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB1220", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB14935", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Term and preterm shotgun samples"}, {"acc": "PRJEB15257", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB15371", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB15633", "pmid": "33005310", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJEB1690", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB17784", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The fecal microbiota in L-DOPA naive PD patients"}, {"acc": "PRJEB1786", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB18755", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Connections between the gut microbiome and gestational diabetes mellitus"}, {"acc": "PRJEB19090", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}, {"acc": "PRJEB20800", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut resistome modulates resilience and recovery of gut microbiota after broad-spectrum an…"}, {"acc": "PRJEB21528", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB21528", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB23662", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A novel affordable reagent for room temperature storage and transport of fecal samples fo…"}, {"acc": "PRJEB24006", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24557", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Alterations of the intestinal microbiome in patients with retinal artery occlusion"}, {"acc": "PRJEB24771", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB25514", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A cross-sectional study of compositional and functional profiles of gut microbiota in Sar…"}, {"acc": "PRJEB26795", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB27005", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27005", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27005", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27928", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB27928", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB28338", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Influence of travel on the gut microbiome of cricketers"}, {"acc": "PRJEB28687", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "U.S. immigration westernizes the human gut microbiome"}, {"acc": "PRJEB28687", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "U.S. immigration westernizes the human gut microbiome"}, {"acc": "PRJEB29052", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29052", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29127", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB29127", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB30834", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30834", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30834", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30924", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Comparative analysis of amplicon and metagenomic sequencing methods reveals key features…"}, {"acc": "PRJEB32135", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32631", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "39287373", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB32794", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Distinct microbiome composition and metabolome exists across subgroups of elite Irish ath…"}, {"acc": "PRJEB32794", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Distinct microbiome composition and metabolome exists across subgroups of elite Irish ath…"}, {"acc": "PRJEB33013", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB33098", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB33098", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB35615", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Associations between the intestinal microbiome and the complement system in age-related m…"}, {"acc": "PRJEB36820", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB37731", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB38528", "pmid": "38441032", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB38528", "pmid": "39287373", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB39610", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39610", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39610", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39813", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenomic study of the oral (saliva) and Gut (stool) microbiome in subjects with Croh…"}, {"acc": "PRJEB41102", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB41102", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB41463", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB42013", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Non-invasive, robust and specific fecal microbiota-based screening for the early detectio…"}, {"acc": "PRJEB42363", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB42363", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB4336", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB44737", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB44737", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB46788", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB46788", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB6070", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6070", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6070", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6092", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "metagenome fecal microbiota, Ilumina seq reads of 12 individuals at 2 timepoints"}, {"acc": "PRJEB6456", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6997", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut and Oral Microbiome Dysbiosis in Rheumatoid Arthritis"}, {"acc": "PRJEB7774", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB7774", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB7774", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB8094", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB8347", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJEB9150", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbial succession follows acute secretory diarrhea in humans"}, {"acc": "PRJEB9150", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbial succession follows acute secretory diarrhea in humans"}, {"acc": "PRJEB9576", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA1046438", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA1046438", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA188481", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA215106", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA221723", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA231909", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA268964", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA275349", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA278393", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA278393", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA287207", "pmid": "26231653", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA289586", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA290380", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA297252", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal microbiota dynamics in hospitalized patients"}, {"acc": "PRJNA299502", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA301903", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA305507", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA305507", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA307231", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA317435", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "ImMicroDyn"}, {"acc": "PRJNA319574", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA320015", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Technical validation of ethanol fixation on stool canine and infant metagenomes"}, {"acc": "PRJNA321218", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA321218", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA322188", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA324129", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human fecal microbiome before and after consumption of AH1206 - Raw sequence reads"}, {"acc": "PRJNA324672", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA327106", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA331138", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of Italian metagenome"}, {"acc": "PRJNA336518", "pmid": "36123315", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA339012", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics analysis of donor and recepient samples from fecal transplant for Recurrent…"}, {"acc": "PRJNA339914", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA340216", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota and metagenomic diversity of omnivore, vegetarian and vegan healthy subjec…"}, {"acc": "PRJNA345144", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA360177", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA360177", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA362284", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA371647", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Raw sequence reads"}, {"acc": "PRJNA373879", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Healthy human fecal metagenomes variably reactivate Irinotecan active metabolite"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379741", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "MECFS metagenomics"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}, {"acc": "PRJNA380118", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA382011", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics-Guided Pathogen Discovery in Travelers' Diarrhea"}, {"acc": "PRJNA384716", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA386422", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA386422", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA386422", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA389927", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Viral and Bacterial Communities of Colorectal Cancer"}, {"acc": "PRJNA390646", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA392180", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA396794", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA397219", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA400072", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA400072", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA400072", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA401385", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA401385", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA401385", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA412411", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA413160", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenome data from infant stools samples raw sequence reads"}, {"acc": "PRJNA413162", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenome data from infant (PD and ProD) stools samples raw sequence reads"}, {"acc": "PRJNA414479", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Total lipopolysaccharide from the human gut microbiome silences toll-like receptor signal…"}, {"acc": "PRJNA417343", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y5 Cohort)"}, {"acc": "PRJNA418941", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota functionality of healthy controls and individuals with kidney stones"}, {"acc": "PRJNA421881", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA422434", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422569", "pmid": "30126456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA428202", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "healthy human gut metagenomics"}, {"acc": "PRJNA431482", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA431482", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA433459", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "gut metagenome Metagenome"}, {"acc": "PRJNA436562", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA438847", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA438847", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA438847", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA445968", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA449784", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA449784", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA472785", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Gut Microbiome Metagenomic Sequencing"}, {"acc": "PRJNA473126", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA482729", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of native and acetylated high amylose maize starch on fecal pH, short chain fatty…"}, {"acc": "PRJNA485056", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA486782", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486795", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Modification of gut microbiota-bile acid-intestinal FXR signaling leads to the clinical b…"}, {"acc": "PRJNA487305", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Effects of non-nutritive sweeteners on the composition of the human gut microbiome"}, {"acc": "PRJNA489090", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489693", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA489693", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA492716", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA497734", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA499081", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}, {"acc": "PRJNA503909", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA503909", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA509512", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiota changes are associated with acquisition of antibiotic resistant genes among in…"}, {"acc": "PRJNA517801", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS_Liver_disease"}, {"acc": "PRJNA518912", "pmid": "36123315", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA521587", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521587", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521878", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA521878", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA527208", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA527208", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA527208", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA529124", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529230", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "n of 1 study: Fecal Microbiota Transplantation in Multiple Sclerosis"}, {"acc": "PRJNA531203", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531203", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531203", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531316", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "CARBEPAD"}, {"acc": "PRJNA532310", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut metagenome"}, {"acc": "PRJNA532538", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome of the gut microbiota in multiple system atrophy patients"}, {"acc": "PRJNA542703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA544527", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA547591", "pmid": "36177457", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547591", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547591", "pmid": "39287373", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547717", "pmid": "36123315", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "human oral metagenome Raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA553191", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA553191", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA553191", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA555020", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA557731", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA562600", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Multi-omic analysis of Clostridioides difficile infection and response to therapy in pedi…"}, {"acc": "PRJNA562766", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA573963", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut Microbiome of Elderly Adults with Advanced Dementia"}, {"acc": "PRJNA588513", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA588513", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA588513", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA589622", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Underfeeding and oral vancomycin perturb the human gut microbiome and impair nutrient abs…"}, {"acc": "PRJNA589622", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Underfeeding and oral vancomycin perturb the human gut microbiome and impair nutrient abs…"}, {"acc": "PRJNA589866", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA594393", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to FOS intake"}, {"acc": "PRJNA594610", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to PDX intake"}, {"acc": "PRJNA594613", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to FOS intake followed by PDX intake"}, {"acc": "PRJNA594620", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to PDX intake followed by FOS intake"}, {"acc": "PRJNA597839", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota, visceral fat and sleeve gastrectomy"}, {"acc": "PRJNA598446", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A Novel Index for Predicting Health Status Using Species-level Gut Microbiome Profiling"}, {"acc": "PRJNA606198", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Comparison of methods to collect fecal samples for microbiome studies using whole-genome…"}, {"acc": "PRJNA613834", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Functional Microbial Responses to Alcohol Abstinence in Patients with Alcohol Use Disorder"}, {"acc": "PRJNA615162", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615162", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615842", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}, {"acc": "PRJNA624223", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624223", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624223", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624763", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA624763", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA624763", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA626004", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics Fecal Microbiome Dysbiosis in Parkinsons Disease"}, {"acc": "PRJNA628604", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}, {"acc": "PRJNA629392", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}, {"acc": "PRJNA630999", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA633576", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA634145", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA63661", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA637175", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}, {"acc": "PRJNA637878", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA637878", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA644725", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA644725", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA644725", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA648487", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA648487", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA649316", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Hi-C and metagenomic sequencing of neutropenic patient microbiomes"}, {"acc": "PRJNA650244", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with COVID-19"}, {"acc": "PRJNA658422", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "gut microbiome shifts associated with Henoch-Schonlein purpura"}, {"acc": "PRJNA663646", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "External validation cohorts for CRC-SNP analysis"}, {"acc": "PRJNA664544", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut microbes Metagenome"}, {"acc": "PRJNA665061", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665061", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665854", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS of feces and saliva of pancreatic cancer patients"}, {"acc": "PRJNA672867", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effectiveness of Fecal Microbiota Transplant together with PD-1 blockade in overcoming re…"}, {"acc": "PRJNA678426", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes."}, {"acc": "PRJNA678454", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of stool samples from two South African cohorts"}, {"acc": "PRJNA679346", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA679346", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA679346", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA685797", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The Influence of the gut microbiome on BCG-induced trained immunity"}, {"acc": "PRJNA686265", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-mediated metabolism effects on immunity in rural and urban African populat…"}, {"acc": "PRJNA686821", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics data from human stool microorganism Raw sequence reads"}, {"acc": "PRJNA687536", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA687536", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA687536", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA688164", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688164", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688164", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688274", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA688881", "pmid": "36177457", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Metagenome-wide association study of gut microbiome revealed potential etiology of Pediat…"}, {"acc": "PRJNA692830", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole genome metagenomic analysis of the gut microbiome in HIV-1 infected individuals on…"}, {"acc": "PRJNA695570", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA698773", "pmid": "33973321", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA698773", "pmid": "34715437", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA698986", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA699281", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The microbiome of aging: instability, heterogeneity, and pathogenicity reservoirs in the…"}, {"acc": "PRJNA705895", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA714678", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA714678", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA715615", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural infant gut microbiota"}, {"acc": "PRJNA730640", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA730640", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}, {"acc": "PRJNA742740", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiota of Kidney Stone patients and live-in partners"}, {"acc": "PRJNA750475", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Longitudinal Analysis of Gut Microbiome among healthy women"}, {"acc": "PRJNA752006", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing to Examine the Gut Microbiome in Konzo"}, {"acc": "PRJNA762543", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA762543", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA763503", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Character of microbial engraftment following the fecal microbiota transplantation in pati…"}, {"acc": "PRJNA772518", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA772518", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA772518", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA782810", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Exploring the species-level infant gut bacterial biodiversity through a meta-analysis and…"}, {"acc": "PRJNA788972", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Interactions between human gut microbiome dynamics and sub-optimal health symptoms during…"}, {"acc": "PRJNA832909", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}, {"acc": "PRJNA833139", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gender-specific cross-generational microbial persistence of human gut microbes"}, {"acc": "PRJNA845806", "pmid": "37191543", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Trial of Diet in Gestational Diabetes Mellitus: Metabolic Consequences to Mother and Offs…"}, {"acc": "PRJNA975734", "pmid": "37728335", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Disentangling the interactions between nasopharyngeal and gut microbiome and their involv…"}, {"acc": "PRJNA991269", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "turroni s": {"display": "Turroni S", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA278393", "pmid": "25981789", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA278393", "pmid": "27462302", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA525982", "pmid": "30948795", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transpl…"}, {"acc": "PRJNA877820", "pmid": "32209716", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}, {"acc": "PRJNA914532", "pmid": "36639555", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "Levofloxacin prophylaxis and parenteral nutrition have a detrimental effect on intestinal…"}, {"acc": "PRJNA991320", "pmid": "37794974", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Depression in older adults"}]}, "turta o": {"display": "Turta O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "turvey s": {"display": "Turvey S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA838575", "pmid": "40623174", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "turvey se": {"display": "Turvey SE", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}, {"acc": "PRJNA715601", "pmid": "41980780", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA838575", "pmid": "37644001", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "41980780", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}, {"acc": "PRJNA838575", "pmid": "42337243", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "CHILD Infant Stool Raw sequence reads"}]}, "tutar e": {"display": "Tutar E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "tuura ce": {"display": "Tuura CE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748448", "pmid": "34523979", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic WGS of Preterm Infant Skin and Stool"}]}, "tyakht av": {"display": "Tyakht AV", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46788", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB86954", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Integrating Metagenomics for Helminth Detection"}, {"acc": "PRJNA48479", "pmid": "41358671", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "tyler bm": {"display": "Tyler BM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA747032", "pmid": "34636674", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of library preparation on metagenomic profiles"}]}, "tyson gw": {"display": "Tyson GW", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1156595", "pmid": "39827146", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics: a new frontier for routine pathology testing of gastrointestinal pathogens"}, {"acc": "PRJNA1200893", "pmid": "41809988", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}, {"acc": "PRJNA907943", "pmid": "36949471", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Characterisation and isolation of novel host-associated Methanocorpusculum species from n…"}]}, "tytgat hlp": {"display": "Tytgat HLP", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB54707", "pmid": "35990340", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, 2-HMO vs. control formula"}, {"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "ubeda c": {"display": "Ubeda C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1420872", "pmid": "41027803", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of gut/stool samples Metagenome"}, {"acc": "PRJNA991269", "pmid": "38589361", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "ubeda-sansano i": {"display": "Úbeda-Sansano I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1227883", "pmid": "31053102", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome"}]}, "uchihashi t": {"display": "Uchihashi T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB16375", "pmid": "38708423", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Hybrid sequence-based analysis reveals the distribution of bacterial species and genes in…"}]}, "udayappan sd": {"display": "Udayappan SD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "udipi sa": {"display": "Udipi SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1445932", "pmid": "42669658", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of a complementary feeding intervention on the gut microbiota in 12-18-month- old…"}]}, "ueki k": {"display": "Ueki K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "uemura n": {"display": "Uemura N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832909", "pmid": "35398347", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}]}, "ueno k": {"display": "Ueno K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB3158", "pmid": "25381053", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shrew fecal metagenome"}]}, "uibo r": {"display": "Uibo R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "ujcic-voortman j": {"display": "Ujčič-Voortman J", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "39866568", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB66728", "pmid": "39866568", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Priority effects, nutrition and HMO-metabolism drive Bifidobacterium longum subspecies dy…"}, {"acc": "PRJEB88622", "pmid": "41785249", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Functional adaptations and metabolic interactions of undescribed Streptococcus and Rothia…"}, {"acc": "PRJNA322188", "pmid": "39866568", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA352475", "pmid": "39866568", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA475246", "pmid": "39866568", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "ujike m": {"display": "Ujike M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "uldrick ts": {"display": "Uldrick TS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "ulfman lh": {"display": "Ulfman LH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA798191", "pmid": "36038938", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bamboo microbiota study in infants"}]}, "ulloa-perez ej": {"display": "Ulloa-Pérez EJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA721692", "pmid": "36786619", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "METAGENOMIC ANALYSIS OF MEXICAN CHILDHOOD GUT MICROBIOTA"}]}, "ulrich cm": {"display": "Ulrich CM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "underhill pa": {"display": "Underhill PA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "underwood ma": {"display": "Underwood MA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA390646", "pmid": "29242832", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA390646", "pmid": "31423298", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA872399", "pmid": "36474348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "ungtrakul t": {"display": "Ungtrakul T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "unno t": {"display": "Unno T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA506137", "pmid": "29858829", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "wastewater Metagenome"}]}, "upton c": {"display": "Upton C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA348754", "pmid": "28885569", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "17th century variola virus"}]}, "urashima t": {"display": "Urashima T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB6456", "pmid": "35768643", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "urayama s": {"display": "Urayama S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB3979", "pmid": "26877136", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of the RNA viral communities in a diatom colony"}]}, "urban c": {"display": "Urban C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "urban jf": {"display": "Urban JF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1406675", "pmid": "41901112", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "GEO accession GSE317287 is currently private and is scheduled to be released on Jul 01, 2…"}]}, "urena i": {"display": "Ureña I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9783", "pmid": "26351665", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing Chalcolithic human remains from El Portalón, Spain"}]}, "uribe jag": {"display": "Uribe JAG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1260751", "pmid": "41536238", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal Obesity Alters Human Milk Oligosaccharides Content and Promotes Early Acquisitio…"}]}, "uriot o": {"display": "Uriot O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52431", "pmid": "36971547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "In Vitro Modelling of Oral Microbial Invasion in the Human Colon"}]}, "urlesberger b": {"display": "Urlesberger B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": "29152325", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": "32354144", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": "36906612", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJEB37883", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "urrutia-baca vh": {"display": "Urrutia-Baca VH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1260751", "pmid": "41536238", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal Obesity Alters Human Milk Oligosaccharides Content and Promotes Early Acquisitio…"}]}, "urschel s": {"display": "Urschel S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA377096", "pmid": "28367229", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soda lake innocuated bioreactors"}]}, "ursell lk": {"display": "Ursell LK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}]}, "ushida k": {"display": "Ushida K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB3819", "pmid": "26468217", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Novel probiotic bacteria retrieved from wild rock ptarmigans"}]}, "ussery dw": {"display": "Ussery DW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}]}, "ussler w": {"display": "Ussler W", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA679730", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2018"}, {"acc": "PRJNA702522", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2019"}]}, "uwamino y": {"display": "Uwamino Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}, {"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "uwanibe j": {"display": "Uwanibe J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "uygun dk": {"display": "Uygun DK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "uyigue e": {"display": "Uyigue E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "uyoga ma": {"display": "Uyoga MA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52748", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome function and composition in infants from rural Kenya and association with…"}, {"acc": "PRJEB6456", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "uzan-yulzari a": {"display": "Uzan-Yulzari A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA606271", "pmid": "33500411", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "uzunoglu fg": {"display": "Uzunoglu FG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}]}, "uzzau s": {"display": "Uzzau S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB19090", "pmid": "27671352", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}]}, "vacondio f": {"display": "Vacondio F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975734", "pmid": "37728335", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Disentangling the interactions between nasopharyngeal and gut microbiome and their involv…"}]}, "vagene aj": {"display": "Vågene ÅJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445215", "pmid": "29959351", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "vaiana c": {"display": "Vaiana C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1294276", "pmid": "41019762", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human pegivirus isolate Pegi-ITA-25, complete genome."}]}, "valcheva r": {"display": "Valcheva R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "valderhaug tg": {"display": "Valderhaug TG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59861", "pmid": "31167860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota alterations after gastric bypass versus sleeve gastrectomy in patients with ty…"}]}, "valdes c": {"display": "Valdes C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA301903", "pmid": "36748547", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}]}, "valdiosera c": {"display": "Valdiosera C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB9783", "pmid": "26351665", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing Chalcolithic human remains from El Portalón, Spain"}, {"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "valdivia rh": {"display": "Valdivia RH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "valeille k": {"display": "Valeille K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80549", "pmid": "41196055", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterisation of the forehead and armpit skin microbiome of healthy individuals using…"}]}, "valentino tr": {"display": "Valentino TR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1201756", "pmid": "34569067", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome Metagenome"}, {"acc": "PRJNA1201756", "pmid": "37940330", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome Metagenome"}]}, "valentino v": {"display": "Valentino V", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39407346", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "valenzuela-diaz s": {"display": "Valenzuela-Diaz S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB89462", "pmid": "41873970", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of phage enrichment on the observed infant gut phageome"}]}, "valguarnera e": {"display": "Valguarnera E", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB8347", "pmid": "42259839", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJNA1148144", "pmid": "42259839", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Biosignatures of late-onset extraintestinal bacterial infections"}, {"acc": "PRJNA301903", "pmid": "42259839", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA48479", "pmid": "42259839", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA489090", "pmid": "42259839", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA799247", "pmid": "42259839", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA884103", "pmid": "42259839", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}]}, "valido e": {"display": "Valido E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1139160", "pmid": "40229352", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uro-Vaxom Pilot"}]}, "valim c": {"display": "Valim C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "valim ta": {"display": "Valim TA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1072081", "pmid": "40237336", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Identifying Biomarkers and Trajectories of Typical Neurodevelopment in Children, the BRAI…"}]}, "valitutti f": {"display": "Valitutti F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "valizadegan n": {"display": "Valizadegan N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA778397", "pmid": "39858934", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal Metagenome Sequences of STRONG Kids 2 Birth Cohort Study"}]}, "vallabhaneni s": {"display": "Vallabhaneni S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}]}, "vallejo a": {"display": "Vallejo A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB5185", "pmid": "25407519", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysfunctional gut microbiota drives chronic immune activation in HIV-treated individuals"}, {"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "valles y": {"display": "Vallès Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1130109", "pmid": "39081889", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome study"}]}, "valles-colomer m": {"display": "Valles-Colomer M", "group": false, "n_studies": 23, "studies": [{"acc": "PRJEB32631", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB45799", "pmid": "36653448", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJEB51728", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool metagenomic datasets"}, {"acc": "PRJEB63351", "pmid": "38104504", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Neuroblastoma is associated with alterations in gut microbiome composition subsequent to…"}, {"acc": "PRJEB6456", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB74322", "pmid": "38870906", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Spanish mother and infants metagenomes of stool and milk samples"}, {"acc": "PRJNA1140720", "pmid": "41565819", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Modelling human microbiome transmission in a nursery setting"}, {"acc": "PRJNA300541", "pmid": "42312244", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA322188", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA352475", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA473126", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA504891", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529400", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Homo sapiens Metagenome"}, {"acc": "PRJNA549787", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA595749", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA716780", "pmid": "37116481", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA898628", "pmid": "40048849", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "PINGU Fecal samples Metagenome"}, {"acc": "PRJNA947377", "pmid": "38366600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Establishment of a non-Westernized gut microbiota in men who have sex with men is associa…"}]}, "valls r": {"display": "Valls R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA955235", "pmid": "39945545", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}]}, "valls ra": {"display": "Valls RA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA955235", "pmid": "42262087", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}]}, "van amburg jc": {"display": "Van Amburg JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA899808", "pmid": "36543914", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Role of the gut microbiome in lung fibrosis"}]}, "van baarle d": {"display": "van Baarle D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA555020", "pmid": "31676793", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "36380002", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}]}, "van best n": {"display": "van Best N", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB89491", "pmid": "42057198", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LucKi Gut - Longitudinal metagenomic sequencing of infant gut microbiota"}, {"acc": "PRJNA1230889", "pmid": "42020426", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}, {"acc": "PRJNA1230889", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degr…"}]}, "van bever hps": {"display": "Van Bever HPS", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "van brussel k": {"display": "Van Brussel K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA841246", "pmid": "35765950", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Feline panleukopenia and healthy control feline faecal samples"}]}, "van criekinge w": {"display": "Van Criekinge W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1113165", "pmid": "40102379", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Misame3 gut metagenomic"}]}, "van de laar aw": {"display": "Van de Laar AW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "van de wiele t": {"display": "Van de Wiele T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA986854", "pmid": "40467587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "stool sample of paired mother-infant for 16S rRNA sequencing analysis"}]}, "van de wouw m": {"display": "van de Wouw M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44042", "pmid": "34252569", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Kefir ameliorates specific microbiota-gut-brain axis impairments in a mouse model relevan…"}]}, "van den abbeele p": {"display": "Van den Abbeele P", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1160256", "pmid": "39919360", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": "40941064", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1160256", "pmid": null, "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "The effects of selected food components and additives on the human gut microbiome"}, {"acc": "PRJNA1177813", "pmid": "39796584", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "2FL age specific bifidobacterium effect"}, {"acc": "PRJNA1456031", "pmid": "42353547", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of selected contaminants on the human gut microbiome tested ex vivo"}, {"acc": "PRJNA961974", "pmid": "38236043", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The effects of selected plant extracts on the human gut microbiome"}]}, "van den berghe l": {"display": "Van Den Berghe L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48663", "pmid": "35311446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Increasing the diversity of dietary fibres in a daily-consumed bread modifies gut microbi…"}]}, "van den boom al": {"display": "van den Boom AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "van den bosch tpp": {"display": "van den Bosch TPP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "van den brink gr": {"display": "van den Brink GR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46777", "pmid": "25836986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Ulcerative Colitis."}]}, "van den brink mr": {"display": "van den Brink MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA259179", "pmid": "25337874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Studies of intestinal microbiome and infection resistance"}]}, "van den brink mrm": {"display": "van den Brink MRM", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}, {"acc": "PRJNA545312", "pmid": "31780560", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "van den ham f": {"display": "van den Ham F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA555020", "pmid": "36380002", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}]}, "van der klis frm": {"display": "van der Klis FRM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44119", "pmid": "35659906", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut colonisation by extended-spectrum β-lactamase-producing Escherichia coli and its asso…"}]}, "van der marel s": {"display": "van der Marel S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1071720", "pmid": "38572716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FECBUD Study Fecal Metagenomes"}]}, "van der meulen ae": {"display": "van der Meulen AE", "group": false, "n_studies": 10, "studies": [{"acc": "PRJDB4176", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1690", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB21528", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB22893", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome impacts response to PD-1 immunotherapy in melanoma patients"}, {"acc": "PRJEB27005", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB39223", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB44737", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJNA231909", "pmid": "39885121", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "39885121", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA48479", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "van der meulen-de jong ae": {"display": "van der Meulen-de Jong AE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1071720", "pmid": "38572716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FECBUD Study Fecal Metagenomes"}]}, "van der oost ewa": {"display": "van der Oost EWA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "van der oost j": {"display": "van der Oost J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA499081", "pmid": "33794724", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}]}, "van der ploeg gr": {"display": "van der Ploeg GR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB32631", "pmid": "40396737", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}]}, "van der spek mj": {"display": "van der Spek MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46777", "pmid": "25836986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Ulcerative Colitis."}]}, "van der werf j": {"display": "Van der Werf J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019894", "pmid": "37835668", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Bos taurus breed:Angus Targeted Locus (Loci)"}]}, "van der woude cj": {"display": "van der Woude CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1071720", "pmid": "38572716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FECBUD Study Fecal Metagenomes"}]}, "van dijk lr": {"display": "van Dijk LR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32631", "pmid": "40328944", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA400628", "pmid": "40328944", "pos": null, "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "Escherichia coli Genome sequencing and assembly"}]}, "van doorslaer k": {"display": "Van Doorslaer K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "van dorp l": {"display": "van Dorp L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32319", "pmid": "32004756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Reads sequenced from a parchment blood stain attributed to the french revolutionary Jean…"}, {"acc": "PRJEB43276", "pmid": "34527890", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Salmonella enterica from a soldier from the 1652-siege of Barcelona (Spain) supports hist…"}]}, "van eijck chj": {"display": "van Eijck CHJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "van espen l": {"display": "Van Espen L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA693793", "pmid": "35320047", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BaBel Infant Gut Virome Raw Data"}]}, "van gelder c": {"display": "van Gelder C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1451746", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mpox virus sequencing and genomic surveillance in Guinea"}]}, "van goethem mw": {"display": "Van Goethem MW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA630822", "pmid": "34732568", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA630822", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}]}, "van hattem jm": {"display": "van Hattem JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA688274", "pmid": "34092249", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Netherland Travelers"}]}, "van heeckeren tot overlaer f": {"display": "van Heeckeren Tot Overlaer F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87602", "pmid": "37243505", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteria in colitis associated cancer development"}]}, "van houten ma": {"display": "van Houten MA", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA555020", "pmid": "31676793", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "36380002", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA613032", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life and effects of early life antibiotics, annotated shotgun s…"}, {"acc": "PRJNA613054", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal resistome in early life and effects of early life antibiotics, annotated shotgun se…"}]}, "van hylckama vlieg je": {"display": "Van Hylckama Vlieg JE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}]}, "van ijcken wfj": {"display": "van IJcken WFJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA798191", "pmid": "36038938", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bamboo microbiota study in infants"}]}, "van kersen w": {"display": "van Kersen W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1049329", "pmid": "39315772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human oropharyngeal resistome of COPD cases and controls using ResCap"}]}, "van limbergen j": {"display": "Van Limbergen J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB29237", "pmid": "30838178", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}, {"acc": "PRJEB29237", "pmid": "35967843", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}, {"acc": "PRJEB41463", "pmid": "35967843", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}]}, "van limbergen je": {"display": "Van Limbergen JE", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB29237", "pmid": "36909730", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}, {"acc": "PRJEB41463", "pmid": "36909730", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB59728", "pmid": "36909730", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "This study examined pediatric patients undergoing treatment for various cancers and exami…"}]}, "van lingen e": {"display": "van Lingen E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1071720", "pmid": "38572716", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FECBUD Study Fecal Metagenomes"}]}, "van loosdrecht mc": {"display": "van Loosdrecht MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1311054", "pmid": "41242561", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "AGS Pilot Scale Microbiome (Florence IDRO.SMART)"}]}, "van nood e": {"display": "Van Nood E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}]}, "van nostrand jd": {"display": "Van Nostrand JD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14607", "pmid": "25721383", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "By taking three metagenomic approaches to reveal the microplankton communities from compo…"}]}, "van olden cc": {"display": "Van Olden CC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "van olst n": {"display": "Van Olst N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "van ranst m": {"display": "Van Ranst M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA344863", "pmid": "27666390", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral Metagenomics of fecal samples of fruit bats"}, {"acc": "PRJNA693793", "pmid": "35320047", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BaBel Infant Gut Virome Raw Data"}]}, "van rossum t": {"display": "Van Rossum T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "van schaik w": {"display": "van Schaik W", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}, {"acc": "PRJNA1191223", "pmid": "40813371", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of early life antibiotic and probiotic treatment on gut microbiome and resistome o…"}, {"acc": "PRJNA555020", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA613032", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life and effects of early life antibiotics, annotated shotgun s…"}, {"acc": "PRJNA613054", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal resistome in early life and effects of early life antibiotics, annotated shotgun se…"}]}, "van sinderen d": {"display": "van Sinderen D", "group": false, "n_studies": 215, "studies": [{"acc": "PRJDB4176", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJDB4525", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics of fecal bacterial consortium inhabiting healthy Asian children"}, {"acc": "PRJEB11419", "pmid": "33005310", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJEB11419", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJEB11532", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}, {"acc": "PRJEB1220", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB14935", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Term and preterm shotgun samples"}, {"acc": "PRJEB15257", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB15633", "pmid": "33005310", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJEB1690", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB17784", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The fecal microbiota in L-DOPA naive PD patients"}, {"acc": "PRJEB1786", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB19090", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}, {"acc": "PRJEB20800", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut resistome modulates resilience and recovery of gut microbiota after broad-spectrum an…"}, {"acc": "PRJEB21528", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB21528", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB23662", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A novel affordable reagent for room temperature storage and transport of fecal samples fo…"}, {"acc": "PRJEB24006", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24557", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Alterations of the intestinal microbiome in patients with retinal artery occlusion"}, {"acc": "PRJEB24771", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB25514", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A cross-sectional study of compositional and functional profiles of gut microbiota in Sar…"}, {"acc": "PRJEB27005", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27928", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB28338", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Influence of travel on the gut microbiome of cricketers"}, {"acc": "PRJEB28687", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "U.S. immigration westernizes the human gut microbiome"}, {"acc": "PRJEB29052", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB30834", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30924", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Comparative analysis of amplicon and metagenomic sequencing methods reveals key features…"}, {"acc": "PRJEB32135", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32631", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "39287373", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB32794", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Distinct microbiome composition and metabolome exists across subgroups of elite Irish ath…"}, {"acc": "PRJEB33013", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB35615", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Associations between the intestinal microbiome and the complement system in age-related m…"}, {"acc": "PRJEB36820", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB37731", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB38528", "pmid": "39287373", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB39610", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39610", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39813", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenomic study of the oral (saliva) and Gut (stool) microbiome in subjects with Croh…"}, {"acc": "PRJEB41102", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB41463", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB42013", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Non-invasive, robust and specific fecal microbiota-based screening for the early detectio…"}, {"acc": "PRJEB42363", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB42363", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB4336", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB44737", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB44737", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB46788", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB48251", "pmid": "37230981", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJEB48251", "pmid": "39365058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJEB48251", "pmid": "40755225", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJEB6070", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6092", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "metagenome fecal microbiota, Ilumina seq reads of 12 individuals at 2 timepoints"}, {"acc": "PRJEB6456", "pmid": "35768643", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6997", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut and Oral Microbiome Dysbiosis in Rheumatoid Arthritis"}, {"acc": "PRJEB7774", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB8347", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJEB9150", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbial succession follows acute secretory diarrhea in humans"}, {"acc": "PRJEB9576", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA1046438", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA215106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA221723", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA268964", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA278393", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA287207", "pmid": "26231653", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA297252", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal microbiota dynamics in hospitalized patients"}, {"acc": "PRJNA299502", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA301903", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA305507", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA319574", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA320015", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Technical validation of ethanol fixation on stool canine and infant metagenomes"}, {"acc": "PRJNA321218", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA321218", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA322188", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA324129", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human fecal microbiome before and after consumption of AH1206 - Raw sequence reads"}, {"acc": "PRJNA324672", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA327106", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA331138", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of Italian metagenome"}, {"acc": "PRJNA336518", "pmid": "36123315", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA339012", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics analysis of donor and recepient samples from fecal transplant for Recurrent…"}, {"acc": "PRJNA339914", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA340216", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota and metagenomic diversity of omnivore, vegetarian and vegan healthy subjec…"}, {"acc": "PRJNA345144", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA360177", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA362284", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA371647", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Raw sequence reads"}, {"acc": "PRJNA373879", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Healthy human fecal metagenomes variably reactivate Irinotecan active metabolite"}, {"acc": "PRJNA376566", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379741", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "MECFS metagenomics"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}, {"acc": "PRJNA382011", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics-Guided Pathogen Discovery in Travelers' Diarrhea"}, {"acc": "PRJNA384716", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA386422", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA389927", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Viral and Bacterial Communities of Colorectal Cancer"}, {"acc": "PRJNA390646", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397219", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA400072", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA401385", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA412411", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA413160", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenome data from infant stools samples raw sequence reads"}, {"acc": "PRJNA413162", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenome data from infant (PD and ProD) stools samples raw sequence reads"}, {"acc": "PRJNA414479", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Total lipopolysaccharide from the human gut microbiome silences toll-like receptor signal…"}, {"acc": "PRJNA417343", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y5 Cohort)"}, {"acc": "PRJNA418941", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota functionality of healthy controls and individuals with kidney stones"}, {"acc": "PRJNA421881", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA422434", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422569", "pmid": "30126456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA428202", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "healthy human gut metagenomics"}, {"acc": "PRJNA431482", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA436562", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA438847", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA449784", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA482729", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of native and acetylated high amylose maize starch on fecal pH, short chain fatty…"}, {"acc": "PRJNA485056", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA486782", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486795", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Modification of gut microbiota-bile acid-intestinal FXR signaling leads to the clinical b…"}, {"acc": "PRJNA487305", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Effects of non-nutritive sweeteners on the composition of the human gut microbiome"}, {"acc": "PRJNA489090", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489693", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA489693", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA492716", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA497734", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA499081", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}, {"acc": "PRJNA503909", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA509512", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiota changes are associated with acquisition of antibiotic resistant genes among in…"}, {"acc": "PRJNA517801", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS_Liver_disease"}, {"acc": "PRJNA518912", "pmid": "36123315", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA521587", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521878", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA521878", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA527208", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA529124", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA531203", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531316", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "CARBEPAD"}, {"acc": "PRJNA532310", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut metagenome"}, {"acc": "PRJNA532538", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome of the gut microbiota in multiple system atrophy patients"}, {"acc": "PRJNA542703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA544527", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA547591", "pmid": "39287373", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547717", "pmid": "36123315", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "human oral metagenome Raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA553191", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA555020", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA557731", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA562766", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA573963", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut Microbiome of Elderly Adults with Advanced Dementia"}, {"acc": "PRJNA588513", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA589622", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Underfeeding and oral vancomycin perturb the human gut microbiome and impair nutrient abs…"}, {"acc": "PRJNA589866", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA594393", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to FOS intake"}, {"acc": "PRJNA594610", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to PDX intake"}, {"acc": "PRJNA594613", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to FOS intake followed by PDX intake"}, {"acc": "PRJNA594620", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to PDX intake followed by FOS intake"}, {"acc": "PRJNA597839", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota, visceral fat and sleeve gastrectomy"}, {"acc": "PRJNA598446", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A Novel Index for Predicting Health Status Using Species-level Gut Microbiome Profiling"}, {"acc": "PRJNA606198", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Comparison of methods to collect fecal samples for microbiome studies using whole-genome…"}, {"acc": "PRJNA613834", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Functional Microbial Responses to Alcohol Abstinence in Patients with Alcohol Use Disorder"}, {"acc": "PRJNA615162", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615162", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615842", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}, {"acc": "PRJNA624223", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624763", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA626004", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics Fecal Microbiome Dysbiosis in Parkinsons Disease"}, {"acc": "PRJNA628604", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}, {"acc": "PRJNA629392", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}, {"acc": "PRJNA630999", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA633576", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA63661", "pmid": "37169786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA637175", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}, {"acc": "PRJNA637878", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA637878", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA644725", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA644725", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA648487", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA649316", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Hi-C and metagenomic sequencing of neutropenic patient microbiomes"}, {"acc": "PRJNA650244", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with COVID-19"}, {"acc": "PRJNA663646", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "External validation cohorts for CRC-SNP analysis"}, {"acc": "PRJNA664544", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut microbes Metagenome"}, {"acc": "PRJNA665061", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665061", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665854", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS of feces and saliva of pancreatic cancer patients"}, {"acc": "PRJNA672867", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effectiveness of Fecal Microbiota Transplant together with PD-1 blockade in overcoming re…"}, {"acc": "PRJNA678426", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes."}, {"acc": "PRJNA678454", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of stool samples from two South African cohorts"}, {"acc": "PRJNA679346", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA679346", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA685797", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The Influence of the gut microbiome on BCG-induced trained immunity"}, {"acc": "PRJNA686265", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-mediated metabolism effects on immunity in rural and urban African populat…"}, {"acc": "PRJNA686821", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics data from human stool microorganism Raw sequence reads"}, {"acc": "PRJNA687536", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA688164", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA692830", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole genome metagenomic analysis of the gut microbiome in HIV-1 infected individuals on…"}, {"acc": "PRJNA695570", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA698773", "pmid": "33973321", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA698986", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA699281", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The microbiome of aging: instability, heterogeneity, and pathogenicity reservoirs in the…"}, {"acc": "PRJNA705895", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA714678", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA730640", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA730640", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA742740", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiota of Kidney Stone patients and live-in partners"}, {"acc": "PRJNA750475", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Longitudinal Analysis of Gut Microbiome among healthy women"}, {"acc": "PRJNA762543", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA762543", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA763503", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Character of microbial engraftment following the fecal microbiota transplantation in pati…"}, {"acc": "PRJNA772518", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA772518", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA782810", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Exploring the species-level infant gut bacterial biodiversity through a meta-analysis and…"}, {"acc": "PRJNA788972", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Interactions between human gut microbiome dynamics and sub-optimal health symptoms during…"}, {"acc": "PRJNA832909", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}, {"acc": "PRJNA833139", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gender-specific cross-generational microbial persistence of human gut microbes"}, {"acc": "PRJNA845806", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Trial of Diet in Gestational Diabetes Mellitus: Metabolic Consequences to Mother and Offs…"}, {"acc": "PRJNA991269", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "van straalen nm": {"display": "van Straalen NM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473421", "pmid": "31086216", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Folsomia candida gut metagenome sequence reads"}]}, "van tilburg bernardes e": {"display": "van Tilburg Bernardes E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1055141", "pmid": "42336834", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool shallow shotgun sequencing (ANTIBIO)"}]}, "van treuren w": {"display": "Van Treuren W", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}, {"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}, {"acc": "PRJEB49206", "pmid": "30118385", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle…"}]}, "van tth": {"display": "Van TTH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA997754", "pmid": "38231265", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Pioneering gut health improvements in piglets with phytogenic feed additives"}]}, "van tyne d": {"display": "Van Tyne D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA748262", "pmid": "36385534", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "van verschuer vmt": {"display": "van Verschuer VMT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "van werkhoven ch": {"display": "van Werkhoven CH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685914", "pmid": "33854066", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiota-based markers predictive of development of Clostridioides difficile infection"}]}, "van-den-berghe l": {"display": "Van-Den-Berghe L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "vanaerschot m": {"display": "Vanaerschot M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019500", "pmid": null, "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}]}, "vance dp": {"display": "Vance DP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA390646", "pmid": "31423298", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}]}, "vande voort jl": {"display": "Vande Voort JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821920", "pmid": "41782637", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mental Health Screening for Babies. What can we learn from infant and caregiver behaviors…"}]}, "vanden heuvel jp": {"display": "Vanden Heuvel JP", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "vandenberg o": {"display": "Vandenberg O", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB43581", "pmid": "34295911", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metataxonomic and metabolic impact of fecal microbiota transplantation from patients with…"}, {"acc": "PRJEB44898", "pmid": "34295911", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hyperammonemia syndrome following lung transplantation."}]}, "vandenbroucke-grauls cmje": {"display": "Vandenbroucke-Grauls CMJE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44119", "pmid": "35659906", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut colonisation by extended-spectrum β-lactamase-producing Escherichia coli and its asso…"}]}, "vandenplas y": {"display": "Vandenplas Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB26810", "pmid": "34071061", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}, {"acc": "PRJEB26810", "pmid": "38257101", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}]}, "vandeputte o": {"display": "Vandeputte O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1011899", "pmid": "40155393", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Collaborative spiking study 2B for high throughput sequencing for virus detection"}]}, "vanderwaal kl": {"display": "VanderWaal KL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA605836", "pmid": "32769191", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomics of Enterobacteriaceae from wild owls"}]}, "vanhomwegen j": {"display": "Vanhomwegen J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1004259", "pmid": "38047654", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic and Amplicon-based Nanopore Sequencing of French Human Monkeypox direct from…"}]}, "vanmechelen b": {"display": "Vanmechelen B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA693793", "pmid": "35320047", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BaBel Infant Gut Virome Raw Data"}]}, "vanneste k": {"display": "Vanneste K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1031997", "pmid": "38659981", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}, {"acc": "PRJNA954551", "pmid": "37537550", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Nanopore sequencing of HMW-DNA to compare DNA extraction methods for metagenomics"}]}, "vanni p": {"display": "Vänni P", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB29078", "pmid": "37874156", "pos": "first", "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA296814", "pmid": "37874156", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA322188", "pmid": "37874156", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}]}, "vantilcke v": {"display": "Vantilcke V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA371487", "pmid": "28715422", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Leishmania RNA Virus Genomics'' study from French Guiana"}]}, "vanzele par": {"display": "Vanzele PAR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1072081", "pmid": "40237336", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Identifying Biomarkers and Trajectories of Typical Neurodevelopment in Children, the BRAI…"}]}, "vardhan m": {"display": "Vardhan M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}]}, "varela e": {"display": "Varela E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA851554", "pmid": "34938418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomes of the gut microbiota of CD patients that required resection from a Belgian c…"}]}, "varelias a": {"display": "Varelias A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA544874", "pmid": "31928131", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome analysis of mice in association with graft-vs-host disease"}]}, "vargas f": {"display": "Vargas F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}]}, "varjosalo m": {"display": "Varjosalo M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27325", "pmid": "30326954", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}]}, "varma m": {"display": "Varma M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "34666677", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "varner en": {"display": "Varner EN", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1173239", "pmid": "40763731", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Amino acid competition shapes Acinetobacter baumannii gut carriage"}]}, "varotsis g": {"display": "Varotsis G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "36151114", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "varsani a": {"display": "Varsani A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA526942", "pmid": "33137401", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "uncultured crAssphage strain:ZA | isolates :M186D4, C0521BW15,C0526BW15, C0521BD4, and C0…"}]}, "varul l": {"display": "Varul L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "vasan rs": {"display": "Vasan RS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA559861", "pmid": "32544460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cholesterol Metabolism by Uncultured Human Gut Bacteria Influences Host Cholesterol Level."}]}, "vasconcellos seg": {"display": "Vasconcellos SEG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "vasconcelos at": {"display": "Vasconcelos AT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA60545", "pmid": "24706600", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes isolated from NE Brazil"}]}, "vasconcelos j": {"display": "Vasconcelos J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "vasconcelos p": {"display": "Vasconcelos P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "vasireddy r": {"display": "Vasireddy R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "30429252", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "vasireddy s": {"display": "Vasireddy S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "30429252", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "vaska a": {"display": "Vaska A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62817", "pmid": "38868903", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome encoded purine and amino acid pathways present prospective biomarkers for…"}]}, "vasquez c": {"display": "Vasquez C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "vatanen t": {"display": "Vatanen T", "group": false, "n_studies": 10, "studies": [{"acc": "PRJEB49383", "pmid": "36163498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm Neonatal Stool Metagenomes"}, {"acc": "PRJNA231909", "pmid": "36195095", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA400072", "pmid": "41299229", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA497734", "pmid": "30559407", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA615162", "pmid": "41299229", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA637785", "pmid": "33346848", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA637785", "pmid": "33985595", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA648487", "pmid": "33732655", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA701480", "pmid": "34186487", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vaginal seeding in babies born by caesarean section (ECOBABe trial) - shotgun metagenomic…"}, {"acc": "PRJNA707065", "pmid": "35075183", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "NiPPeR Study - pilot microbiome investigation"}, {"acc": "PRJNA821542", "pmid": "39551356", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut metagenomes from mothers and their infants in the EDIA study"}, {"acc": "PRJNA821542", "pmid": "41299229", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut metagenomes from mothers and their infants in the EDIA study"}]}, "vaughan a": {"display": "Vaughan A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA562766", "pmid": "33208745", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}]}, "vaughn ml": {"display": "Vaughn ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "vaz pk": {"display": "Vaz PK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA596855", "pmid": "31383310", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Disease surveillance in wild Victorian cacatuids"}]}, "vazquez-baeza y": {"display": "Vázquez-Baeza Y", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}, {"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}, {"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}, {"acc": "PRJNA597371", "pmid": "34193290", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal Selective Pressure and Coevolution Project Part 4 human placebo Metagenome"}, {"acc": "PRJNA602729", "pmid": "34079079", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}]}, "vazquez-campos x": {"display": "Vázquez-Campos X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14718", "pmid": "28667104", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Study of the changes in the metagenome of the groundwater community at Little Forest Lega…"}, {"acc": "PRJEB14718", "pmid": "34737728", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Study of the changes in the metagenome of the groundwater community at Little Forest Lega…"}, {"acc": "PRJEB14718", "pmid": null, "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Study of the changes in the metagenome of the groundwater community at Little Forest Lega…"}]}, "vazquez-castellanos jf": {"display": "Vázquez-Castellanos JF", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB3206", "pmid": "23760301", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of the viral and microbial metagenomes associated with the Crohn's disease"}, {"acc": "PRJEB5185", "pmid": "25407519", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysfunctional gut microbiota drives chronic immune activation in HIV-treated individuals"}]}, "vazquez-uribe r": {"display": "Vazquez-Uribe R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573821", "pmid": "32919472", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Whole Meta-genome shotgun sequencing of stool samples from human treated with antibiotics"}]}, "vazzana r": {"display": "Vazzana R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1294276", "pmid": "41019762", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human pegivirus isolate Pegi-ITA-25, complete genome."}]}, "vechetti ij": {"display": "Vechetti IJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1201756", "pmid": "34569067", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome Metagenome"}]}, "vega thurber r": {"display": "Vega Thurber R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA437202", "pmid": "33117317", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Red Sea coral metagenomes"}, {"acc": "PRJNA747032", "pmid": "34636674", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of library preparation on metagenomic profiles"}]}, "vega-abellaneda s": {"display": "Vega-Abellaneda S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1146994", "pmid": "38556088", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Personal traits, lifestyle decisions, and geography shape our dietary intake and conseque…"}, {"acc": "PRJNA1171764", "pmid": "40524271", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut metagenome of IBD patients and healthy controls"}]}, "vehik k": {"display": "Vehik K", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA268964", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA392180", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA485056", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA497734", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "vehreschild mjgt": {"display": "Vehreschild MJGT", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}, {"acc": "PRJNA685914", "pmid": "33854066", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiota-based markers predictive of development of Clostridioides difficile infection"}]}, "veleminsky p": {"display": "Velemínský P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "velez d": {"display": "Velez D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "velo j": {"display": "Velo J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": "40631735", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "venkatasubrahmanyam s": {"display": "Venkatasubrahmanyam S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "vens m": {"display": "Vens M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "ventura m": {"display": "Ventura M", "group": false, "n_studies": 244, "studies": [{"acc": "PRJDB4176", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJDB4525", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics of fecal bacterial consortium inhabiting healthy Asian children"}, {"acc": "PRJEB10878", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB11419", "pmid": "33005310", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJEB11419", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "American Gut Project"}, {"acc": "PRJEB11532", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}, {"acc": "PRJEB1220", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB1220", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB1220", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36123315", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36316342", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB14935", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Term and preterm shotgun samples"}, {"acc": "PRJEB15257", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB15371", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB15633", "pmid": "33005310", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJEB1690", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB17784", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The fecal microbiota in L-DOPA naive PD patients"}, {"acc": "PRJEB1786", "pmid": "36123315", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB18755", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Connections between the gut microbiome and gestational diabetes mellitus"}, {"acc": "PRJEB19090", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential and active functions in the gut microbiota of a healthy human cohort"}, {"acc": "PRJEB20800", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut resistome modulates resilience and recovery of gut microbiota after broad-spectrum an…"}, {"acc": "PRJEB21528", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB21528", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB23662", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A novel affordable reagent for room temperature storage and transport of fecal samples fo…"}, {"acc": "PRJEB24006", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24557", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Alterations of the intestinal microbiome in patients with retinal artery occlusion"}, {"acc": "PRJEB24771", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36123315", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36316342", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB25514", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A cross-sectional study of compositional and functional profiles of gut microbiota in Sar…"}, {"acc": "PRJEB26795", "pmid": "38441032", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB27005", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27005", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27005", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27928", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB27928", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB28338", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Influence of travel on the gut microbiome of cricketers"}, {"acc": "PRJEB28687", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "U.S. immigration westernizes the human gut microbiome"}, {"acc": "PRJEB28687", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "U.S. immigration westernizes the human gut microbiome"}, {"acc": "PRJEB29052", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29052", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29127", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB29127", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB30834", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30834", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30834", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30924", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Comparative analysis of amplicon and metagenomic sequencing methods reveals key features…"}, {"acc": "PRJEB32135", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36123315", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36316342", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32631", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "39287373", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB32794", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Distinct microbiome composition and metabolome exists across subgroups of elite Irish ath…"}, {"acc": "PRJEB32794", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Distinct microbiome composition and metabolome exists across subgroups of elite Irish ath…"}, {"acc": "PRJEB33013", "pmid": "38426063", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB33098", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB33098", "pmid": "38441032", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB35615", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Associations between the intestinal microbiome and the complement system in age-related m…"}, {"acc": "PRJEB36820", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB37731", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB38528", "pmid": "38441032", "pos": "last", "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB38528", "pmid": "39287373", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB39610", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39610", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39610", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39813", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenomic study of the oral (saliva) and Gut (stool) microbiome in subjects with Croh…"}, {"acc": "PRJEB41102", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB41102", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB41463", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB42013", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Non-invasive, robust and specific fecal microbiota-based screening for the early detectio…"}, {"acc": "PRJEB42363", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB42363", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB4336", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB44737", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB44737", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB46788", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB46788", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB6070", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6070", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6070", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6092", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "metagenome fecal microbiota, Ilumina seq reads of 12 individuals at 2 timepoints"}, {"acc": "PRJEB6456", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36123315", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36316342", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6997", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut and Oral Microbiome Dysbiosis in Rheumatoid Arthritis"}, {"acc": "PRJEB70237", "pmid": "40315414", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB70237", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant and parental stool WGS metagenomes"}, {"acc": "PRJEB7774", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB7774", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB7774", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB8094", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB8347", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJEB9150", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbial succession follows acute secretory diarrhea in humans"}, {"acc": "PRJEB9150", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbial succession follows acute secretory diarrhea in humans"}, {"acc": "PRJEB9576", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA1046438", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA1046438", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA188481", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA215106", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA221723", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA231909", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA268964", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "36123315", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "34704805", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA275349", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA278393", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA278393", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA287207", "pmid": "26231653", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36123315", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36316342", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA289586", "pmid": "38441032", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA290380", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36123315", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36316342", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA297252", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal microbiota dynamics in hospitalized patients"}, {"acc": "PRJNA299502", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA301903", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA305507", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA305507", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA307231", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA317435", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "ImMicroDyn"}, {"acc": "PRJNA319574", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA320015", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Technical validation of ethanol fixation on stool canine and infant metagenomes"}, {"acc": "PRJNA321218", "pmid": "36123315", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA321218", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA322188", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36123315", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36316342", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA324129", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human fecal microbiome before and after consumption of AH1206 - Raw sequence reads"}, {"acc": "PRJNA324672", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA327106", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA331138", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of Italian metagenome"}, {"acc": "PRJNA336518", "pmid": "36123315", "pos": "last", "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA339012", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics analysis of donor and recepient samples from fecal transplant for Recurrent…"}, {"acc": "PRJNA339914", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36316342", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA340216", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota and metagenomic diversity of omnivore, vegetarian and vegan healthy subjec…"}, {"acc": "PRJNA345144", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36123315", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36316342", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36123315", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36316342", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA360177", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA360177", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA362284", "pmid": "36123315", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA371647", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Raw sequence reads"}, {"acc": "PRJNA373879", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Healthy human fecal metagenomes variably reactivate Irinotecan active metabolite"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379741", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "MECFS metagenomics"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}, {"acc": "PRJNA380118", "pmid": "38441032", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA382011", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics-Guided Pathogen Discovery in Travelers' Diarrhea"}, {"acc": "PRJNA384716", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "38426063", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA386422", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA386422", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA386422", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA389927", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Viral and Bacterial Communities of Colorectal Cancer"}, {"acc": "PRJNA390646", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA392180", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "38441032", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA396794", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA397219", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA400072", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA400072", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA400072", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA401385", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA401385", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA401385", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA412411", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA413160", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenome data from infant stools samples raw sequence reads"}, {"acc": "PRJNA413162", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenome data from infant (PD and ProD) stools samples raw sequence reads"}, {"acc": "PRJNA414479", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Total lipopolysaccharide from the human gut microbiome silences toll-like receptor signal…"}, {"acc": "PRJNA417343", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y5 Cohort)"}, {"acc": "PRJNA418941", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota functionality of healthy controls and individuals with kidney stones"}, {"acc": "PRJNA421881", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA422434", "pmid": "36123315", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422569", "pmid": "30126456", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "36123315", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "36316342", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA428202", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "healthy human gut metagenomics"}, {"acc": "PRJNA431482", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA431482", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA433459", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "gut metagenome Metagenome"}, {"acc": "PRJNA436562", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA438847", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA438847", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA438847", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA445968", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA449784", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA449784", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA472785", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Gut Microbiome Metagenomic Sequencing"}, {"acc": "PRJNA473126", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36123315", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36316342", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36123315", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36316342", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA482729", "pmid": "36123315", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of native and acetylated high amylose maize starch on fecal pH, short chain fatty…"}, {"acc": "PRJNA485056", "pmid": "38426063", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA486782", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486795", "pmid": "36123315", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Modification of gut microbiota-bile acid-intestinal FXR signaling leads to the clinical b…"}, {"acc": "PRJNA487305", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Effects of non-nutritive sweeteners on the composition of the human gut microbiome"}, {"acc": "PRJNA489090", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489693", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA489693", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA492716", "pmid": "36123315", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA497734", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA499081", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}, {"acc": "PRJNA503909", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA503909", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38426063", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA509512", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiota changes are associated with acquisition of antibiotic resistant genes among in…"}, {"acc": "PRJNA517801", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS_Liver_disease"}, {"acc": "PRJNA518912", "pmid": "36123315", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA521587", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521587", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521878", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA521878", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36123315", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36316342", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA527208", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA527208", "pmid": "38441032", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA527208", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA529124", "pmid": "38426063", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529230", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "n of 1 study: Fecal Microbiota Transplantation in Multiple Sclerosis"}, {"acc": "PRJNA531203", "pmid": "36177457", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531203", "pmid": "38441032", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531203", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA531316", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "CARBEPAD"}, {"acc": "PRJNA532310", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut metagenome"}, {"acc": "PRJNA532538", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome of the gut microbiota in multiple system atrophy patients"}, {"acc": "PRJNA542703", "pmid": "36123315", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36316342", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA544527", "pmid": "36123315", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA547591", "pmid": "36177457", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547591", "pmid": "38441032", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547591", "pmid": "39287373", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547717", "pmid": "36123315", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "human oral metagenome Raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36123315", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36316342", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA553191", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA553191", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA553191", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA555020", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA557731", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36123315", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36316342", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA562600", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Multi-omic analysis of Clostridioides difficile infection and response to therapy in pedi…"}, {"acc": "PRJNA562766", "pmid": "36123315", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA573963", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut Microbiome of Elderly Adults with Advanced Dementia"}, {"acc": "PRJNA588513", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA588513", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA588513", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA589622", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Underfeeding and oral vancomycin perturb the human gut microbiome and impair nutrient abs…"}, {"acc": "PRJNA589622", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Underfeeding and oral vancomycin perturb the human gut microbiome and impair nutrient abs…"}, {"acc": "PRJNA589866", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA594393", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to FOS intake"}, {"acc": "PRJNA594610", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to PDX intake"}, {"acc": "PRJNA594613", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to FOS intake followed by PDX intake"}, {"acc": "PRJNA594620", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiome response to PDX intake followed by FOS intake"}, {"acc": "PRJNA597839", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota, visceral fat and sleeve gastrectomy"}, {"acc": "PRJNA598446", "pmid": "39287373", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A Novel Index for Predicting Health Status Using Species-level Gut Microbiome Profiling"}, {"acc": "PRJNA606198", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Comparison of methods to collect fecal samples for microbiome studies using whole-genome…"}, {"acc": "PRJNA613834", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Functional Microbial Responses to Alcohol Abstinence in Patients with Alcohol Use Disorder"}, {"acc": "PRJNA615162", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615162", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615842", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}, {"acc": "PRJNA624223", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624223", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624223", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624763", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA624763", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA624763", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA626004", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics Fecal Microbiome Dysbiosis in Parkinsons Disease"}, {"acc": "PRJNA628604", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}, {"acc": "PRJNA629392", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}, {"acc": "PRJNA630999", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA633576", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA634145", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA63661", "pmid": "37169786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA637175", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}, {"acc": "PRJNA637878", "pmid": "36123315", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA637878", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA644725", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA644725", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA644725", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA648487", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA648487", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA649316", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Hi-C and metagenomic sequencing of neutropenic patient microbiomes"}, {"acc": "PRJNA650244", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with COVID-19"}, {"acc": "PRJNA658422", "pmid": "38441032", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "gut microbiome shifts associated with Henoch-Schonlein purpura"}, {"acc": "PRJNA663646", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "External validation cohorts for CRC-SNP analysis"}, {"acc": "PRJNA664544", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut microbes Metagenome"}, {"acc": "PRJNA665061", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665061", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665854", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS of feces and saliva of pancreatic cancer patients"}, {"acc": "PRJNA672867", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effectiveness of Fecal Microbiota Transplant together with PD-1 blockade in overcoming re…"}, {"acc": "PRJNA678426", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes."}, {"acc": "PRJNA678454", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of stool samples from two South African cohorts"}, {"acc": "PRJNA679346", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA679346", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA679346", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA685797", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The Influence of the gut microbiome on BCG-induced trained immunity"}, {"acc": "PRJNA686265", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-mediated metabolism effects on immunity in rural and urban African populat…"}, {"acc": "PRJNA686821", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics data from human stool microorganism Raw sequence reads"}, {"acc": "PRJNA687536", "pmid": "36177457", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA687536", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA687536", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA688164", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688164", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688164", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688274", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA688881", "pmid": "36177457", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Metagenome-wide association study of gut microbiome revealed potential etiology of Pediat…"}, {"acc": "PRJNA692830", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole genome metagenomic analysis of the gut microbiome in HIV-1 infected individuals on…"}, {"acc": "PRJNA695570", "pmid": "36177457", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "38441032", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA698773", "pmid": "33973321", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA698773", "pmid": "34715437", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA698986", "pmid": "36123315", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA699281", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The microbiome of aging: instability, heterogeneity, and pathogenicity reservoirs in the…"}, {"acc": "PRJNA705895", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA714678", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA714678", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA715615", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural infant gut microbiota"}, {"acc": "PRJNA730640", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA730640", "pmid": "39287373", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}, {"acc": "PRJNA742740", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiota of Kidney Stone patients and live-in partners"}, {"acc": "PRJNA750475", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Longitudinal Analysis of Gut Microbiome among healthy women"}, {"acc": "PRJNA752006", "pmid": "38441032", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing to Examine the Gut Microbiome in Konzo"}, {"acc": "PRJNA762543", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA762543", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA763503", "pmid": "38426063", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Character of microbial engraftment following the fecal microbiota transplantation in pati…"}, {"acc": "PRJNA772518", "pmid": "38426063", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA772518", "pmid": "38441032", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA772518", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA782810", "pmid": "36316342", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Exploring the species-level infant gut bacterial biodiversity through a meta-analysis and…"}, {"acc": "PRJNA788972", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Interactions between human gut microbiome dynamics and sub-optimal health symptoms during…"}, {"acc": "PRJNA832909", "pmid": "39287373", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics of the fecal and salivary microbiome of pancreatic cancer patients"}, {"acc": "PRJNA833139", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gender-specific cross-generational microbial persistence of human gut microbes"}, {"acc": "PRJNA845806", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Trial of Diet in Gestational Diabetes Mellitus: Metabolic Consequences to Mother and Offs…"}, {"acc": "PRJNA975734", "pmid": "37728335", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Disentangling the interactions between nasopharyngeal and gut microbiome and their involv…"}, {"acc": "PRJNA991269", "pmid": "41350579", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "vepsalainen o": {"display": "Vepsäläinen O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27325", "pmid": "30326954", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic supplementation restores normal microbiota composition and function in antibiot…"}]}, "vera m": {"display": "Vera M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB5185", "pmid": "25407519", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysfunctional gut microbiota drives chronic immune activation in HIV-treated individuals"}]}, "vera-cabrera l": {"display": "Vera-Cabrera L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "vera-rodriguez r": {"display": "Vera-Rodriguez R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87701", "pmid": "37465917", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "AI4Food: a feasibility study for the implementation of automated devices in the nutrition…"}]}, "veras mm": {"display": "Veras MM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA894691", "pmid": "37082122", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Maternal exposure to air pollution changes gut microbiota in mice"}]}, "verastegui y": {"display": "Verastegui Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202388", "pmid": "25028422", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "verger eo": {"display": "Verger EO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB23292", "pmid": "29899081", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysbiosis, including decreased gut microbial richness (MGR) and composition modifications…"}]}, "vergna lm": {"display": "Vergna LM", "group": false, "n_studies": 31, "studies": [{"acc": "PRJEB12669", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB1786", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB24771", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB32135", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA272371", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA287207", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA321218", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA322188", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA336518", "pmid": "36123315", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA345144", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA362284", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA422434", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422569", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA473126", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA482729", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of native and acetylated high amylose maize starch on fecal pH, short chain fatty…"}, {"acc": "PRJNA486795", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Modification of gut microbiota-bile acid-intestinal FXR signaling leads to the clinical b…"}, {"acc": "PRJNA492716", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA518912", "pmid": "36123315", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA524703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA547717", "pmid": "36123315", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "human oral metagenome Raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA557731", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA562766", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA637878", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA698986", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}]}, "verhasselt v": {"display": "Verhasselt V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1452547", "pmid": "42129350", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chlorinated Water Effects on Infant Gut Microbiota"}]}, "verheij j": {"display": "Verheij J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB47902", "pmid": "32640105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "BARIA baseline first 100 individuals, metagenomes"}]}, "verheij m": {"display": "Verheij M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "verhoeff ap": {"display": "Verhoeff AP", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "39866568", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB66728", "pmid": "39866568", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Priority effects, nutrition and HMO-metabolism drive Bifidobacterium longum subspecies dy…"}, {"acc": "PRJEB88622", "pmid": "41785249", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Functional adaptations and metabolic interactions of undescribed Streptococcus and Rothia…"}, {"acc": "PRJNA322188", "pmid": "39866568", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA352475", "pmid": "39866568", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA475246", "pmid": "39866568", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "verhoeven a": {"display": "Verhoeven A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44119", "pmid": "35659906", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut colonisation by extended-spectrum β-lactamase-producing Escherichia coli and its asso…"}]}, "verissimo vc": {"display": "Veríssimo VC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "verkade hj": {"display": "Verkade HJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "verma n": {"display": "Verma N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}]}, "vermeire s": {"display": "Vermeire S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA804384", "pmid": "37052201", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Inflammatory bowel disease patients undergoing biological therapy"}, {"acc": "PRJNA851554", "pmid": "34938418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomes of the gut microbiota of CD patients that required resection from a Belgian c…"}]}, "verner-jeffreys d": {"display": "Verner-Jeffreys D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4647", "pmid": "26197475", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Search Engine for Antimicrobial Resistance: a cloud compatible pipeline and web interface…"}]}, "verner-jeffreys dw": {"display": "Verner-Jeffreys DW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12083", "pmid": "28175320", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Metagenomes"}]}, "versalovic j": {"display": "Versalovic J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA400259", "pmid": "33328537", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human Milk Microbiome Metagenome"}, {"acc": "PRJNA46337", "pmid": "28274256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}]}, "verspaget hw": {"display": "Verspaget HW", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB44737", "pmid": "34126062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJNA1071720", "pmid": "38572716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FECBUD Study Fecal Metagenomes"}]}, "verster aj": {"display": "Verster AJ", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB6456", "pmid": "30340536", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1015704", "pmid": "40042126", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal and oropharyngeal microbiota from infants with cystic fibrosis on and off beta-lact…"}, {"acc": "PRJNA1177516", "pmid": "40483244", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Changes in Fecal Microbiota in Adults with Cystic Fibrosis with 6 Months of CFTR Modulato…"}, {"acc": "PRJNA955235", "pmid": "39945545", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Persistent delay in maturation of the developing gut microbiome in infants with cystic fi…"}]}, "vervier k": {"display": "Vervier K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB32631", "pmid": "31534227", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}]}, "veschetti l": {"display": "Veschetti L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB121228", "pmid": "41683794", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "MPXV whole-genome sequencing of Italian cases - both clade IIb and Ib."}, {"acc": "PRJEB67641", "pmid": "38709303", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental Plaque Microbiota Sequence Counts for Microbial Profiling and Resistance Genes Det…"}]}, "veseli i": {"display": "Veseli I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701961", "pmid": "37069665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA701961", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "vester bm": {"display": "Vester BM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA49397", "pmid": "20962874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Canine gastrointestinal metagenome"}]}, "vestergaard g": {"display": "Vestergaard G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA715601", "pmid": "40108202", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}]}, "vestergaard ga": {"display": "Vestergaard GA", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715601", "pmid": "38135681", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA715601", "pmid": "38730321", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA916259", "pmid": "38135681", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}]}, "vestergaard h": {"display": "Vestergaard H", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB51635", "pmid": "36604748", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The gut microbiota in multiple sclerosis varies with disease activity"}]}, "vetizou m": {"display": "Vetizou M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "vetterli d": {"display": "Vetterli D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81450", "pmid": "40562730", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Streptococcus gordonii endocarditis"}]}, "vey g": {"display": "Vey G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202388", "pmid": "24911009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Canadian MetaMicrobiome Library Projects"}]}, "vezzani a": {"display": "Vezzani A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1168703", "pmid": "38485093", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of an epilepsy-linked gut microbiota signature in a pediatric rat model of…"}]}, "viale a": {"display": "Viale A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA259179", "pmid": "25337874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Studies of intestinal microbiome and infection resistance"}]}, "viappiani a": {"display": "Viappiani A", "group": false, "n_studies": 188, "studies": [{"acc": "PRJDB4176", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJDB4525", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics of fecal bacterial consortium inhabiting healthy Asian children"}, {"acc": "PRJEB10878", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarke…"}, {"acc": "PRJEB1220", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB12669", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB15257", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB17784", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The fecal microbiota in L-DOPA naive PD patients"}, {"acc": "PRJEB1786", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenome in European women with normal, impaired and diabetic glucose control"}, {"acc": "PRJEB21528", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB23662", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A novel affordable reagent for room temperature storage and transport of fecal samples fo…"}, {"acc": "PRJEB24006", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24557", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Alterations of the intestinal microbiome in patients with retinal artery occlusion"}, {"acc": "PRJEB24771", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB24771", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Legumes and Growth Data"}, {"acc": "PRJEB25514", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A cross-sectional study of compositional and functional profiles of gut microbiota in Sar…"}, {"acc": "PRJEB26795", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB27005", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB27928", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB28338", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Influence of travel on the gut microbiome of cricketers"}, {"acc": "PRJEB29052", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29052", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}, {"acc": "PRJEB29127", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A causal role of the gut microbiome in schizophrenia"}, {"acc": "PRJEB30834", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient…"}, {"acc": "PRJEB30924", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Comparative analysis of amplicon and metagenomic sequencing methods reveals key features…"}, {"acc": "PRJEB32135", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32135", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB32631", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB33013", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiome"}, {"acc": "PRJEB33098", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Colonbiome pilot: 9 stools, sequenced by shotgun"}, {"acc": "PRJEB35615", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Associations between the intestinal microbiome and the complement system in age-related m…"}, {"acc": "PRJEB36820", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB38528", "pmid": "38441032", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}, {"acc": "PRJEB39610", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39610", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB39813", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenomic study of the oral (saliva) and Gut (stool) microbiome in subjects with Croh…"}, {"acc": "PRJEB41102", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB41102", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB41463", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Examining the gut microbial community and genes in children with acute lymphoblastic leuk…"}, {"acc": "PRJEB42363", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB42363", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB44737", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJEB46788", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB6070", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6092", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "metagenome fecal microbiota, Ilumina seq reads of 12 individuals at 2 timepoints"}, {"acc": "PRJEB6456", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB7774", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJEB8347", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJEB9576", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA1046438", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Profiling the gut microbiota throughout human lifespan"}, {"acc": "PRJNA215106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA215106", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA221723", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA268964", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA268964", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "26231653", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA289586", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA290380", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA300541", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA300541", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA307231", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA319574", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA321218", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA321218", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}, {"acc": "PRJNA322188", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA324129", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human fecal microbiome before and after consumption of AH1206 - Raw sequence reads"}, {"acc": "PRJNA324672", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome"}, {"acc": "PRJNA327106", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA331138", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of Italian metagenome"}, {"acc": "PRJNA336518", "pmid": "36123315", "pos": null, "reason_code": "host_environmental", "src": "L", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA339012", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenomics analysis of donor and recepient samples from fecal transplant for Recurrent…"}, {"acc": "PRJNA339914", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA340216", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota and metagenomic diversity of omnivore, vegetarian and vegan healthy subjec…"}, {"acc": "PRJNA345144", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA360177", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA360177", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome before and after simulated space capsule life"}, {"acc": "PRJNA362284", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}, {"acc": "PRJNA371647", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Raw sequence reads"}, {"acc": "PRJNA373879", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Healthy human fecal metagenomes variably reactivate Irinotecan active metabolite"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379741", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "MECFS metagenomics"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}, {"acc": "PRJNA380118", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA382011", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomics-Guided Pathogen Discovery in Travelers' Diarrhea"}, {"acc": "PRJNA384716", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA386422", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Unveiling the gut microbiota composition and functionality associated with constipation t…"}, {"acc": "PRJNA389927", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Viral and Bacterial Communities of Colorectal Cancer"}, {"acc": "PRJNA392180", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA394849", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "NGS approaches to metagenomics of gut microbiome"}, {"acc": "PRJNA397112", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA397219", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA400072", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA401385", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut microbiota Raw sequence reads"}, {"acc": "PRJNA412411", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}, {"acc": "PRJNA414479", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Total lipopolysaccharide from the human gut microbiome silences toll-like receptor signal…"}, {"acc": "PRJNA418941", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiota functionality of healthy controls and individuals with kidney stones"}, {"acc": "PRJNA421881", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA422434", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422569", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA422569", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA428202", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "healthy human gut metagenomics"}, {"acc": "PRJNA431482", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA431482", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome-Behcet's disease"}, {"acc": "PRJNA436562", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA438847", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of adult CF and control stool"}, {"acc": "PRJNA445968", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA449784", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA449784", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA473126", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA482729", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of native and acetylated high amylose maize starch on fecal pH, short chain fatty…"}, {"acc": "PRJNA485056", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA486782", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486795", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Modification of gut microbiota-bile acid-intestinal FXR signaling leads to the clinical b…"}, {"acc": "PRJNA487305", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Effects of non-nutritive sweeteners on the composition of the human gut microbiome"}, {"acc": "PRJNA489090", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489693", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA489693", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA492716", "pmid": "36123315", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "human gut metagenome Raw sequence reads"}, {"acc": "PRJNA497734", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA499081", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}, {"acc": "PRJNA503909", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA503909", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA504891", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA509512", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiota changes are associated with acquisition of antibiotic resistant genes among in…"}, {"acc": "PRJNA518912", "pmid": "36123315", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA521587", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521587", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome in individuals with fibromyalgia - WGS"}, {"acc": "PRJNA521878", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA524703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA527208", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA529124", "pmid": "38426063", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA529124", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA531203", "pmid": "38441032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Metagenome"}, {"acc": "PRJNA532538", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome of the gut microbiota in multiple system atrophy patients"}, {"acc": "PRJNA542703", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA543967", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA544527", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA547591", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing"}, {"acc": "PRJNA547717", "pmid": "36123315", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "human oral metagenome Raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA549787", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA553191", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota up to extreme longevity and the increasing r…"}, {"acc": "PRJNA555020", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA557731", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA562600", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Multi-omic analysis of Clostridioides difficile infection and response to therapy in pedi…"}, {"acc": "PRJNA562766", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA588513", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA597839", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota, visceral fat and sleeve gastrectomy"}, {"acc": "PRJNA613834", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Functional Microbial Responses to Alcohol Abstinence in Patients with Alcohol Use Disorder"}, {"acc": "PRJNA615162", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA615842", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Alteration in gut microbiota composition and functional relevance in subclinical carotid…"}, {"acc": "PRJNA624223", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome alterations and longitudinal kinetics in COVID-19 patients"}, {"acc": "PRJNA624763", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomics of human gut microbiota in China high longevity area"}, {"acc": "PRJNA626004", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics Fecal Microbiome Dysbiosis in Parkinsons Disease"}, {"acc": "PRJNA628604", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Oral capsulized Fecal microbiota transplantation for eradication of carbapenemase-produci…"}, {"acc": "PRJNA630999", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA633576", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA633576", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA634145", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA634145", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA637175", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}, {"acc": "PRJNA637878", "pmid": "36123315", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA637878", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}, {"acc": "PRJNA644725", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA644725", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA644725", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA648487", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND tria…"}, {"acc": "PRJNA649316", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Hi-C and metagenomic sequencing of neutropenic patient microbiomes"}, {"acc": "PRJNA658422", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "gut microbiome shifts associated with Henoch-Schonlein purpura"}, {"acc": "PRJNA663646", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "External validation cohorts for CRC-SNP analysis"}, {"acc": "PRJNA664544", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut microbes Metagenome"}, {"acc": "PRJNA665061", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IDEO Microbiome Study"}, {"acc": "PRJNA665854", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS of feces and saliva of pancreatic cancer patients"}, {"acc": "PRJNA678426", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes."}, {"acc": "PRJNA678454", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Shotgun metagenomic sequencing of stool samples from two South African cohorts"}, {"acc": "PRJNA679346", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA679346", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of human feces"}, {"acc": "PRJNA685797", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The Influence of the gut microbiome on BCG-induced trained immunity"}, {"acc": "PRJNA686265", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome-mediated metabolism effects on immunity in rural and urban African populat…"}, {"acc": "PRJNA686821", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics data from human stool microorganism Raw sequence reads"}, {"acc": "PRJNA687536", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of non-IBD and Crohn's disease fecal samples"}, {"acc": "PRJNA688164", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688164", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA688274", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Netherland Travelers"}, {"acc": "PRJNA692830", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Whole genome metagenomic analysis of the gut microbiome in HIV-1 infected individuals on…"}, {"acc": "PRJNA695570", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "38441032", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA695570", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA698773", "pmid": "33973321", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Genetic insights into the dark matter of the mammalian gut microbiota through targeted ge…"}, {"acc": "PRJNA698986", "pmid": "36123315", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA705895", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota of donors and RCDI patients before and after FMT"}, {"acc": "PRJNA714678", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA714678", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis reveals the signature of gut microbiota associated with human chrono…"}, {"acc": "PRJNA715615", "pmid": "34152069", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural infant gut microbiota"}, {"acc": "PRJNA730640", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}, {"acc": "PRJNA742740", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiota of Kidney Stone patients and live-in partners"}, {"acc": "PRJNA750475", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Longitudinal Analysis of Gut Microbiome among healthy women"}, {"acc": "PRJNA752006", "pmid": "38441032", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomic Sequencing to Examine the Gut Microbiome in Konzo"}, {"acc": "PRJNA762543", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human fecal and saliva metagenome Raw sequence reads"}, {"acc": "PRJNA763503", "pmid": "38426063", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Character of microbial engraftment following the fecal microbiota transplantation in pati…"}, {"acc": "PRJNA772518", "pmid": "38426063", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA772518", "pmid": "38441032", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human gut metagenomic sequence Raw sequence reads"}, {"acc": "PRJNA782810", "pmid": "36316342", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Exploring the species-level infant gut bacterial biodiversity through a meta-analysis and…"}, {"acc": "PRJNA833139", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gender-specific cross-generational microbial persistence of human gut microbes"}, {"acc": "PRJNA845806", "pmid": "37191543", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Trial of Diet in Gestational Diabetes Mellitus: Metabolic Consequences to Mother and Offs…"}, {"acc": "PRJNA975734", "pmid": "37728335", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Disentangling the interactions between nasopharyngeal and gut microbiome and their involv…"}, {"acc": "PRJNA991269", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "vicente acp": {"display": "Vicente ACP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA527208", "pmid": "31417531", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA527208", "pmid": "32339065", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}, {"acc": "PRJNA527208", "pmid": "35840779", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of the Yanomami from Brazil"}]}, "vickers cj": {"display": "Vickers CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA431961", "pmid": "39696719", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Geothermal fumarole subsurface microbial communities from Mt. Erebus, Antarctica"}]}, "victorsen a": {"display": "Victorsen A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1458854", "pmid": "42370707", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Validation of an Integrated Metagenomic Pipeline Combining Optimized Wet Lab Processing a…"}]}, "vicze m": {"display": "Vicze M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "vida a": {"display": "Vida A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019500", "pmid": "39054413", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of acute encephalitis syndrome with implementation of metagenomic next gene…"}]}, "vidal k": {"display": "Vidal K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB42539", "pmid": "34756056", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "FUT2/FUT3 genes sequences and nasopharyngeal shotgun metagenomics from the Microbiota and…"}, {"acc": "PRJNA806984", "pmid": null, "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Microbiota and Health Study (Dhaka, Bangladesh)"}]}, "viehweger a": {"display": "Viehweger A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA799199", "pmid": "35256725", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Evaluation of microbiome enrichment and host DNA depletion in human vaginal samples using…"}]}, "vieille-marchiset a": {"display": "Vieille-Marchiset A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "vieira j": {"display": "Vieira J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "vieira l": {"display": "Vieira L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB53055", "pmid": "35750157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "36131032", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "37696933", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}, {"acc": "PRJEB53055", "pmid": "39360827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomic surveillance of Monkeypox virus in Portugal"}]}, "vieira yr": {"display": "Vieira YR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "vieira-silva s": {"display": "Vieira-Silva S", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}, {"acc": "PRJEB51776", "pmid": "37069399", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa"}, {"acc": "PRJNA693793", "pmid": "35320047", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BaBel Infant Gut Virome Raw Data"}, {"acc": "PRJNA804384", "pmid": "37052201", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Inflammatory bowel disease patients undergoing biological therapy"}]}, "viemann d": {"display": "Viemann D", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB15633", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}, {"acc": "PRJEB52640", "pmid": "37474785", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Longitudinal development of the airway metagenome of preterm very low birth weight infant…"}, {"acc": "PRJNA284162", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "STL Infant Twins Microbiome"}, {"acc": "PRJNA301903", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA379120", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA497734", "pmid": "42618579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "viet tl": {"display": "Viet TL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA722408", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}]}, "vietsch ee": {"display": "Vietsch EE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "vigano gmd": {"display": "Vigano GMD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44042", "pmid": "34252569", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Kefir ameliorates specific microbiota-gut-brain axis impairments in a mouse model relevan…"}]}, "vigl ee": {"display": "Vigl EE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}]}, "vijay p": {"display": "Vijay P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "vijayvargiya p": {"display": "Vijayvargiya P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA518922", "pmid": "31577814", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metegenomic sequencing of blood from patients with vector-borne diseases"}]}, "vijg j": {"display": "Vijg J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "vijgen s": {"display": "Vijgen S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB20595", "pmid": "30065706", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "A case of hepatic brucelloma studied by next generation sequencing"}]}, "vikgren j": {"display": "Vikgren J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "vikram s": {"display": "Vikram S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA630822", "pmid": "34732568", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA630822", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "16S amplicons, metagenomes and metagenome-assembled genomes of mineral soils from Mackay…"}, {"acc": "PRJNA930765", "pmid": "36869137", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rickettsia felis reads and MAG recovered from a child who lived in southern Africa 2000 y…"}]}, "vila av": {"display": "Vila AV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "vilches-ponce k": {"display": "Vilches-Ponce K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "40131312", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "vilela cls": {"display": "Vilela CLS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA649484", "pmid": "34389536", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "vilfan id": {"display": "Vilfan ID", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "villalobos uas": {"display": "Villalobos UAS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1260751", "pmid": "41536238", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal Obesity Alters Human Milk Oligosaccharides Content and Promotes Early Acquisitio…"}]}, "villanueva l": {"display": "Villanueva L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB4261", "pmid": "21593795", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of two depths of the Arabian sea oxygen minimum zone using SOLiD a…"}]}, "villar l": {"display": "Villar L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "villaruz ae": {"display": "Villaruz AE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA483343", "pmid": "30305736", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "villasenor a": {"display": "Villaseñor A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991269", "pmid": "38589361", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "villela hdm": {"display": "Villela HDM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA649484", "pmid": "34389536", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "villette r": {"display": "Villette R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA782492", "pmid": "40707492", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MiBiPa - Non-invasive microbiome-derived multi-omic biomarkers for the early-stage detect…"}]}, "villoslada-blanco p": {"display": "Villoslada-Blanco P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819232", "pmid": "35618952", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Integrase Inhibitors on gut and oral microbiome"}]}, "vinayek r": {"display": "Vinayek R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39023", "pmid": "24440222", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Treatment of recurrent Clostridioides difficile infection with Fecal Microbiota Transplan…"}]}, "vincent c": {"display": "Vincent C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA297252", "pmid": "26975510", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Intestinal microbiota dynamics in hospitalized patients"}]}, "vincent jj": {"display": "Vincent JJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA277916", "pmid": "27896068", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "VAG Mine Pit Pond Metagenome"}]}, "vincent m": {"display": "Vincent M", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA273761", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA376566", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA46337", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA63661", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA733860", "pmid": "34704805", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infant fecal metagenome"}]}, "vines j": {"display": "Viñes J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42270", "pmid": "33957869", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Long-read metagenomics to retrieve high-quality metagenome-assembled genomes from canine…"}]}, "vinje j": {"display": "Vinjé J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA322324", "pmid": "26893429", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA322324", "pmid": "28302791", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA490509", "pmid": "28408676", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Raw sequence reads of multiple foodborne viruses from outbreaks or sporatic cased in US"}, {"acc": "PRJNA853174", "pmid": "35891376", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "vinner l": {"display": "Vinner L", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB12636", "pmid": "26818667", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of P. acnes levels in NGS data from cancer samples"}, {"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}, {"acc": "PRJNA789782", "pmid": "34970712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of bat coronaviruses from Eswatini"}]}, "vinogradova e": {"display": "Vinogradova E", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1217583", "pmid": "40299456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic predictors of childhood obesity, cross-talk with maternal microflora"}, {"acc": "PRJNA949528", "pmid": "37308527", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}, {"acc": "PRJNA949528", "pmid": "40299456", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}, {"acc": "PRJNA949528", "pmid": "40399402", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Health programming, evolution of the infants microbiome"}, {"acc": "PRJNA973824", "pmid": "40399402", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Immunoregulatory role of gut microbiome and mycobiome in aging"}]}, "vinoy s": {"display": "Vinoy S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB76794", "pmid": "39710576", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Multifunctional dietary approach reduces intestinal inflammation in relation with changes…"}]}, "vinuela l": {"display": "Viñuela L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB55075", "pmid": "38524774", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Molecular and phylogenetic characterization of the monkeypox outbreak in Andalusia, Spain"}]}, "vinyard b": {"display": "Vinyard B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1406675", "pmid": "41901112", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "GEO accession GSE317287 is currently private and is scheduled to be released on Jul 01, 2…"}]}, "virgin hw": {"display": "Virgin HW", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB7772", "pmid": "25619688", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}, {"acc": "PRJEB9818", "pmid": "26351661", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The gut DNA viromes of Malawian twins discordant for severe acute undernutrition"}]}, "virkud yv": {"display": "Virkud YV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1445880", "pmid": "42010622", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome samples Gastrointestinal Microbiome and Allergic Proctocolitis coho…"}]}, "virta lj": {"display": "Virta LJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11685", "pmid": "26811868", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children"}]}, "virta m": {"display": "Virta M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA384716", "pmid": "30250208", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}]}, "virta mp": {"display": "Virta MP", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "34677583", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "34677583", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA301903", "pmid": "34677583", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA396794", "pmid": "34677583", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "34677583", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA532310", "pmid": "34677583", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut metagenome"}]}, "virtanen sm": {"display": "Virtanen SM", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA475246", "pmid": "35685890", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA821542", "pmid": "39551356", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut metagenomes from mothers and their infants in the EDIA study"}]}, "viscardi rm": {"display": "Viscardi RM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA774819", "pmid": "35695455", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Highly specialized carbohydrate metabolism capability in Bifidobacterium strain associate…"}, {"acc": "PRJNA776332", "pmid": "35280991", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Altered gut microbiome and fecal immune phenotype in early preterm infants with leaky gut"}]}, "viscogliosi e": {"display": "Viscogliosi E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27005", "pmid": "30726303", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}]}, "visconti a": {"display": "Visconti A", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA957107", "pmid": "38291926", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Imrabiome - Rheumatoid project"}]}, "visel a": {"display": "Visel A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}]}, "vital m": {"display": "Vital M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51501", "pmid": "36416760", "pos": "last", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Predicting butyrate- and propionate-forming bacteria of gut microbiota from sequencing da…"}, {"acc": "PRJEB51501", "pmid": null, "pos": "last", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Predicting butyrate- and propionate-forming bacteria of gut microbiota from sequencing da…"}]}, "vitale sg": {"display": "Vitale SG", "group": false, "n_studies": 36, "studies": [{"acc": "PRJDB4525", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics of fecal bacterial consortium inhabiting healthy Asian children"}, {"acc": "PRJEB12669", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB32631", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB41102", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Analysis of human fecal metagenomes from adults and infants, to investigate strain persis…"}, {"acc": "PRJEB42363", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiom…"}, {"acc": "PRJEB6456", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA215106", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA268964", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA272371", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA290380", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA300541", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA322188", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA345144", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA422569", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Tracing mother-infant transmission of bacteriophages by means of a novel tool for analysi…"}, {"acc": "PRJNA436562", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489693", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial Diversity of NICU Infant Feeding Tubes"}, {"acc": "PRJNA497734", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA521878", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543967", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA549787", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA633576", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA644725", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}, {"acc": "PRJNA686821", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics data from human stool microorganism Raw sequence reads"}, {"acc": "PRJNA688164", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Role of synbiotics to prevalence of LRTinfections in infants:gut metagenomic analysis"}, {"acc": "PRJNA695570", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}, {"acc": "PRJNA833139", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gender-specific cross-generational microbial persistence of human gut microbes"}, {"acc": "PRJNA991269", "pmid": "41350579", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "vitality team": {"display": "VITALITY team", "group": true, "n_studies": 2, "studies": [{"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "vitman schorr a": {"display": "Vitman Schorr A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991320", "pmid": "37794974", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Depression in older adults"}]}, "vitulo n": {"display": "Vitulo N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746509", "pmid": "34946200", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota in an infant with propionic acidemia before and after probiotic supplement…"}]}, "vivancos mj": {"display": "Vivancos MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "vlajic m": {"display": "Vlajic M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB100868", "pmid": "42644416", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "PREVENT 1: Gut microbiota development and health in early life"}]}, "vlamakis h": {"display": "Vlamakis H", "group": false, "n_studies": 8, "studies": [{"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA398089", "pmid": "35614211", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA559861", "pmid": "32544460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cholesterol Metabolism by Uncultured Human Gut Bacteria Influences Host Cholesterol Level."}, {"acc": "PRJNA657818", "pmid": "33377127", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}, {"acc": "PRJNA685168", "pmid": "34297922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics suggest diverse mechanisms for response to biologic therapies in IBD"}]}, "vlassis n": {"display": "Vlassis N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "vo at": {"display": "Vo AT", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA510445", "pmid": "31959989", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA510445", "pmid": "34525965", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA516442", "pmid": "30784601", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Depletion of human DNA from complex clinical samples for metagenomic sequencing"}, {"acc": "PRJNA530252", "pmid": "32631930", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effect of cycled, inhaled tobramycin on the sputum microbiome in cystic fibrosis"}, {"acc": "PRJNA860728", "pmid": "36121157", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "GenCap-Seq Selectively Enriches Bacterial DNA and Enables Genome-wide Measurement of Intr…"}]}, "vo j": {"display": "Vo J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}]}, "vodapalli a": {"display": "Vodapalli A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1415085", "pmid": "41844673", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Profiling of Antimicrobial Resistance in Wastewater from Metropolitan Cities…"}]}, "vogel a": {"display": "Vogel A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "vogt jk": {"display": "Vogt JK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62848", "pmid": "38010080", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant stool, moderate and late preterm infants, probiotic and prebiotic"}]}, "vogtmann e": {"display": "Vogtmann E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}]}, "voigt ay": {"display": "Voigt AY", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB12357", "pmid": "27126044", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB46778", "pmid": "27126044", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}, {"acc": "PRJNA289586", "pmid": "30747106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}]}, "voigt s": {"display": "Voigt S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "vollbrecht l": {"display": "Vollbrecht L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819194", "pmid": "35606844", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "KRuMBS: Kyphosid Ruminant Microbial Biodigestor of Seaweeds"}]}, "volmer jg": {"display": "Volmer JG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA907943", "pmid": "36949471", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Characterisation and isolation of novel host-associated Methanocorpusculum species from n…"}]}, "volobaev v": {"display": "Volobaev V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "volpe ar": {"display": "Volpe AR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA695570", "pmid": "34442687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of healthy mothers and their children"}]}, "volpedo g": {"display": "Volpedo G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1168703", "pmid": "38485093", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of an epilepsy-linked gut microbiota signature in a pediatric rat model of…"}]}, "vomstein k": {"display": "Vomstein K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37731", "pmid": "39160615", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}]}, "von bergen m": {"display": "von Bergen M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB3085", "pmid": "23236009", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Disturbance of the gut microbiota during antibiotic stress (therapy): a multi-omic approa…"}]}, "von dach e": {"display": "von Dach E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB40995", "pmid": "34492446", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of antibiotic duration on the intestinal microbiota and resistome"}]}, "von hunnius t": {"display": "von Hunnius T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB62879", "pmid": "39694065", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient genomes reveal a deep history of Treponema pallidum in the Americas"}]}, "von klitzing a": {"display": "von Klitzing A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB86263", "pmid": "39218875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gender-affirming hormonal therapy induces a gender-concordant fecal metagenome transition…"}]}, "von meijenfeldt fab": {"display": "von Meijenfeldt FAB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB23207", "pmid": "29468143", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic characterization of the human intestinal microbiota in faecal samples from ST…"}]}, "von mutius e": {"display": "von Mutius E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15633", "pmid": "35406036", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}]}, "von rosenvinge ec": {"display": "von Rosenvinge EC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39023", "pmid": "24303043", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Treatment of recurrent Clostridioides difficile infection with Fecal Microbiota Transplan…"}, {"acc": "PRJEB39023", "pmid": "24440222", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Treatment of recurrent Clostridioides difficile infection with Fecal Microbiota Transplan…"}]}, "von schwartzenberg rj": {"display": "von Schwartzenberg RJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA412411", "pmid": "34163067", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diet-induced perturbations to the human gut microbiome"}]}, "vonaesch p": {"display": "Vonaesch P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA300541", "pmid": "38049420", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "vongsangnak w": {"display": "Vongsangnak W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA637175", "pmid": "33668840", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}]}, "voolstra cr": {"display": "Voolstra CR", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA437202", "pmid": "32438323", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Red Sea coral metagenomes"}, {"acc": "PRJNA437202", "pmid": "33117317", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Red Sea coral metagenomes"}, {"acc": "PRJNA649484", "pmid": "34389536", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mussismilia hispida BMC metaorganism sequence data"}]}, "vorkas ck": {"display": "Vorkas CK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445968", "pmid": "30282828", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}]}, "voskuijl wp": {"display": "Voskuijl WP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "vossen rham": {"display": "Vossen RHAM", "group": false, "n_studies": 10, "studies": [{"acc": "PRJDB4176", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1690", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB21528", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB22893", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome impacts response to PD-1 immunotherapy in melanoma patients"}, {"acc": "PRJEB27005", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB39223", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB44737", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJNA231909", "pmid": "39885121", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "39885121", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA48479", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "vrieze a": {"display": "Vrieze A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}]}, "vucak m": {"display": "Vučak M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA882666", "pmid": "37643006", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing of three novel cytomegalovirus species from Mastomys natalensis rodents from M…"}]}, "vuillemin a": {"display": "Vuillemin A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB66721", "pmid": "39384533", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metabolic features explaining the prevalence Bathyarchaeia among microbial communities in…"}, {"acc": "PRJEB98232", "pmid": "41459228", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Cryptic sulfur cycling sustains lithotrophy in the deep biosphere of ferruginous Lake Tow…"}]}, "vuillermin p": {"display": "Vuillermin P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}]}, "vujkovic-cvijin i": {"display": "Vujkovic-Cvijin I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "vuong j": {"display": "Vuong J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "waalkes a": {"display": "Waalkes A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1015704", "pmid": "40042126", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal and oropharyngeal microbiota from infants with cystic fibrosis on and off beta-lact…"}, {"acc": "PRJNA860728", "pmid": "36121157", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "GenCap-Seq Selectively Enriches Bacterial DNA and Enables Genome-wide Measurement of Intr…"}]}, "wachtel h": {"display": "Wachtel H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45845", "pmid": "715442", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The Cysteine Protease Giardipain-1 from Giardia duodenalis Contributes to the Disruption…"}]}, "wade kc": {"display": "Wade KC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA872399", "pmid": "36474348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "wadge s": {"display": "Wadge S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB72531", "pmid": "38424099", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prebiotic intervention for muscle function and cognition"}]}, "wadt d": {"display": "Wadt D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1279254", "pmid": "41562608", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of synovial joint fluid collected from feedlot cattle. Raw sequenc…"}]}, "wadugu b": {"display": "Wadugu B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73590", "pmid": "38235427", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as…"}]}, "waeschenbach a": {"display": "Waeschenbach A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "waghmare a": {"display": "Waghmare A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA338014", "pmid": "28379561", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA907865", "pmid": "37486790", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Rhinovirus raw sequence reads"}]}, "waghmare aa": {"display": "Waghmare AA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28838146", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "wagner bd": {"display": "Wagner BD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29078", "pmid": "30352933", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}]}, "wagner j": {"display": "Wagner J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28671", "pmid": "34972822", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A_novel_nano_iron_supplement__IHAT__to_safely_combact_iron_deficiency_and_anemia"}, {"acc": "PRJEB28671", "pmid": "41387413", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A_novel_nano_iron_supplement__IHAT__to_safely_combact_iron_deficiency_and_anemia"}]}, "wagner m": {"display": "Wagner M", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1033532", "pmid": "38014294", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Evaluating the impact of pharmaceuticals on the human gut microbiome Raw sequence reads"}, {"acc": "PRJNA997800", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997800", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997801", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "38267717", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "40739039", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "wagner s": {"display": "Wagner S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81434", "pmid": "40461059", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Toxic microbiome and progression of chronic kidney disease. Insight of the longitudinal s…"}]}, "wain j": {"display": "Wain J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB14935", "pmid": "29096601", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Term and preterm shotgun samples"}, {"acc": "PRJEB21259", "pmid": "41144256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}]}, "waite dw": {"display": "Waite DW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA381379", "pmid": "29802288", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut metagenome the kakapo"}]}, "waite td": {"display": "Waite TD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14718", "pmid": "28667104", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Study of the changes in the metagenome of the groundwater community at Little Forest Lega…"}, {"acc": "PRJEB14718", "pmid": "34737728", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Study of the changes in the metagenome of the groundwater community at Little Forest Lega…"}, {"acc": "PRJEB14718", "pmid": null, "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Study of the changes in the metagenome of the groundwater community at Little Forest Lega…"}]}, "wake h": {"display": "Wake H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "waker e": {"display": "Waker E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA943135", "pmid": "37577378", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diarrhoeal-associated gut dysbiosis in cancer and inflammatory bowel disease patients i…"}]}, "waks ag": {"display": "Waks AG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1295573", "pmid": "41760690", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The intestinal microbiome of patients with newly diagnosed invasive breast cancer and duc…"}]}, "waku d": {"display": "Waku D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB15258", "pmid": "38265980", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic analyses of 7,000 to 5,500 years old coprolites excavated from the Torihama s…"}]}, "walas d": {"display": "Walas D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1011899", "pmid": "40155393", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Collaborative spiking study 2B for high throughput sequencing for virus detection"}]}, "wald a": {"display": "Wald A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28287142", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28711653", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29281620", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29898986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30305383", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30383234", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "waldburger l": {"display": "Waldburger L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA914281", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Tandem repeats in giant archaeal Borg elements undergo rapid evolution and create new int…"}]}, "waldenstrom a": {"display": "Waldenström A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "waldron l": {"display": "Waldron L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "waljee a": {"display": "Waljee A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884688", "pmid": "36778973", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiota and protein source"}]}, "walker as": {"display": "Walker AS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1031997", "pmid": "34609275", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Determination of KMA confidence detetcion thresholds"}]}, "walker aw": {"display": "Walker AW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21624", "pmid": "29491419", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of the rumen of Scottish cattle."}]}, "walker bj": {"display": "Walker BJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "walker c": {"display": "Walker C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "walker k": {"display": "Walker K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "walker m": {"display": "Walker M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "walker n": {"display": "Walker N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701480", "pmid": "34186487", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vaginal seeding in babies born by caesarean section (ECOBABe trial) - shotgun metagenomic…"}]}, "wall dp": {"display": "Wall DP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "34666677", "pos": "last", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": "36220843", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": "37938270", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "wall gd": {"display": "Wall GD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "wallace m": {"display": "Wallace M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1148144", "pmid": "40128855", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Biosignatures of late-onset extraintestinal bacterial infections"}]}, "wallace ma": {"display": "Wallace MA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884103", "pmid": "37134153", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}]}, "wallace mj": {"display": "Wallace MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1067813", "pmid": "39731916", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C. difficile-associated mouse and human fecal metagenomes"}]}, "wallace rj": {"display": "Wallace RJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "30429252", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "wallingford jc": {"display": "Wallingford JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54991", "pmid": "36211486", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomics of infant formula study"}]}, "walsh a": {"display": "Walsh A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "walsh am": {"display": "Walsh AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44042", "pmid": "34252569", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Kefir ameliorates specific microbiota-gut-brain axis impairments in a mouse model relevan…"}]}, "walsh cj": {"display": "Walsh CJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB44042", "pmid": "34252569", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Kefir ameliorates specific microbiota-gut-brain axis impairments in a mouse model relevan…"}, {"acc": "PRJEB48251", "pmid": "37230981", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJEB48251", "pmid": "39365058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}, {"acc": "PRJEB48251", "pmid": "40755225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "walsh l": {"display": "Walsh L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA997800", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental, raw material and final product samples from meat f…"}, {"acc": "PRJNA997801", "pmid": "39214080", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}]}, "walsh m": {"display": "Walsh M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "walson jl": {"display": "Walson JL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}, {"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "walter j": {"display": "Walter J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}, {"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "walters t": {"display": "Walters T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}]}, "walters wa": {"display": "Walters WA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA916952", "pmid": "36758519", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Stanford's Outcomes Research in Kids (STORK) Virome"}]}, "waltz s": {"display": "Waltz S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA255985", "pmid": "25279840", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human saliva, creek water, and synthetic metagenomic samples used in selective DNA isolat…"}]}, "wamalwa d": {"display": "Wamalwa D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1045584", "pmid": "39185682", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of SARS-CoV-2 in stool sample from women living with HIV and HIV-negative women an…"}, {"acc": "PRJNA635738", "pmid": "33727396", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Breast milk Microbiome/Virome of HIV+ Kenyan Women is Not Altered by Immunosuppression"}]}, "wampach l": {"display": "Wampach L", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA230567", "pmid": "25424998", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA289586", "pmid": "27723761", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA379120", "pmid": "30504906", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA489090", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA595749", "pmid": "36717704", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}]}, "wan j": {"display": "Wan J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB23052", "pmid": "33510860", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJNA516054", "pmid": "33510860", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Whole metagenomic analysis of the enteric microbiota in children with autism spectrum dis…"}]}, "wan kh": {"display": "Wan KH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA607328", "pmid": "32381611", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Whole-genome sequencing of bacteria, fungi, plants, and metagenomes"}]}, "wan qh": {"display": "Wan QH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA539906", "pmid": "31708889", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Chinese alligator gut metagenome"}]}, "wan sh": {"display": "Wan SH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1087008", "pmid": "39236827", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic and Metatranscriptomic data of Marine Microbes in Coastal Waters of the South…"}]}, "wan x": {"display": "Wan X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA683873", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Severe acute respiratory syndrome coronavirus 2 Genome sequencing"}]}, "wanderkoke v": {"display": "Wanderkoke V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA847605", "pmid": "36565815", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosa…"}]}, "wang b": {"display": "Wang B", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA215106", "pmid": "24236055", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Pediatric Fecal Metagenome"}, {"acc": "PRJNA245336", "pmid": "26229982", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uncontacted Yanomami resistome"}, {"acc": "PRJNA301903", "pmid": "27572443", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA549787", "pmid": "31832638", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "South African HIV-exposed, uninfected infant gut microbiomes"}, {"acc": "PRJNA945408", "pmid": "38085102", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prev…"}]}, "wang b-y": {"display": "Wang B-Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1010809", "pmid": "38230927", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Role of P. gingivalis in microbial diversity and composition of dental plaque"}]}, "wang by": {"display": "Wang BY", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1010809", "pmid": "37674718", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Role of P. gingivalis in microbial diversity and composition of dental plaque"}, {"acc": "PRJNA1160290", "pmid": "39416080", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and characteristics of the oral microbiome across race and ethnicity"}, {"acc": "PRJNA1160290", "pmid": "39769067", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and characteristics of the oral microbiome across race and ethnicity"}, {"acc": "PRJNA1482867", "pmid": "42428114", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of dental plaque microbiomes before and after non-sur…"}, {"acc": "PRJNA1482867", "pmid": "42589241", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of dental plaque microbiomes before and after non-sur…"}]}, "wang c": {"display": "Wang C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1018083", "pmid": "38705065", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "comammox supports stable production of ammonia nitrate from urine"}]}, "wang cc": {"display": "Wang CC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1145565", "pmid": "39234544", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "WES of Taiwain Children with Enterovirus (EV) Infections"}]}, "wang chern sw": {"display": "Wang Chern SW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "27932649", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "wang d": {"display": "Wang D", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB7772", "pmid": "25619688", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}, {"acc": "PRJEB82926", "pmid": "40431157", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotic Supplementation Impacts Gut Microbiota Development in Infants at Risk of Atopy:…"}, {"acc": "PRJEB9818", "pmid": "26351661", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The gut DNA viromes of Malawian twins discordant for severe acute undernutrition"}, {"acc": "PRJNA1092353", "pmid": "39353343", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Benzothiazole-degrading consortia Raw sequence reads and Metagenome"}, {"acc": "PRJNA818432", "pmid": "35783441", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Raw sequence reads"}]}, "wang e": {"display": "Wang E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA776087", "pmid": "36973820", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}]}, "wang f": {"display": "Wang F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1139690", "pmid": "40340756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "HOME Study fecal samples"}]}, "wang g": {"display": "Wang G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA633324", "pmid": "33751816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Comparative microbial antibiotic resistome between urban and deep forest environments"}, {"acc": "PRJNA905328", "pmid": "37904586", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut microbes sequencing"}]}, "wang h": {"display": "Wang H", "group": false, "n_studies": 58, "studies": [{"acc": "PRJDB38192", "pmid": "37674580", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Utility of clinical metagenomics in diagnosing malignancies in a cohort of patients with…"}, {"acc": "PRJEB24006", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB27928", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB32631", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "38424077", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB36820", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB6456", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB73551", "pmid": "38912204", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "PICU cases"}, {"acc": "PRJEB9524", "pmid": "38424077", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Expanded Enteric Virome and Altered Bacterial Microbiome in Acquired Immunodeficiency Syn…"}, {"acc": "PRJNA272371", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA301903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356809", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "the gut metagenome of ginat pandas , bears and carnivores Raw sequence reads"}, {"acc": "PRJNA358755", "pmid": "35568757", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "wild and captive gut Raw sequence reads"}, {"acc": "PRJNA376566", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA385126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA387903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Intestinal Virome Changes Precede Autoimmunity in Type I Diabetes Susceptible Children"}, {"acc": "PRJNA390646", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA407341", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA427478", "pmid": "30107526", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pomacea canaliculata isolate:SZHN2017 Genome sequencing and assembly"}, {"acc": "PRJNA436562", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA446038", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA491626", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut virome of Cameroonians living in close proximity with bats"}, {"acc": "PRJNA504891", "pmid": "37596617", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA521878", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA529124", "pmid": "37596617", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA542703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA545408", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Longitudinal study of the human gut virome"}, {"acc": "PRJNA555020", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA562766", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA657818", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA681411", "pmid": "34230529", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Clinical sample from VZV patients"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA774076", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Gut metagenome of bamboo rats"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA869587", "pmid": "36973710", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human viral metagenome Metagenome"}, {"acc": "PRJNA871195", "pmid": "36973710", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Intestinal phage analysis of neonates and children under 5 years old"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "wang hh": {"display": "Wang HH", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA321058", "pmid": "32508773", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Increased intestinal microbial diversity following fecal microbiota transplant for active…"}, {"acc": "PRJNA352475", "pmid": "32508773", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA484151", "pmid": "32508773", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Rural and Urban infant''s fecal microbiota study"}]}, "wang j": {"display": "Wang J", "group": false, "n_studies": 27, "studies": [{"acc": "PRJDB28434", "pmid": "37979711", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Macrogenomic data of mice (PRJCA016720)"}, {"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB15111", "pmid": "26932197", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}, {"acc": "PRJEB26795", "pmid": "30609941", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJEB59277", "pmid": "37009508", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "PICU mngs PCP"}, {"acc": "PRJNA1024085", "pmid": "38423525", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut microbiota facilitate adaptation of invasive moths to new host plants"}, {"acc": "PRJNA1052964", "pmid": "39034349", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA1052964", "pmid": "40860434", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA1151839", "pmid": "39663251", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Salivary microbiome in burning mouth syndrome"}, {"acc": "PRJNA1218236", "pmid": "40144527", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Analysis of Intragastric Administration of Donkey Milk on Mouse Immunity Using Gut Microb…"}, {"acc": "PRJNA1338803", "pmid": "41421358", "pos": "first", "reason_code": "host_synthetic", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of faecal fermentation in vitro"}, {"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}, {"acc": "PRJNA352475", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA422434", "pmid": "41421358", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA473126", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA474601", "pmid": "29988510", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Loss of intestinal microbes in cholecystectomy patients"}, {"acc": "PRJNA489090", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA555020", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA63661", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA681411", "pmid": "34230529", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Clinical sample from VZV patients"}, {"acc": "PRJNA695070", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Transmission and formation of microbiota in the ealry life"}, {"acc": "PRJNA695070", "pmid": "38818221", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Transmission and formation of microbiota in the ealry life"}, {"acc": "PRJNA746290", "pmid": "35210415", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Circulating Microbiome in Myeloid Malignancy"}, {"acc": "PRJNA781781", "pmid": "38169289", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of Lactobacillus plantarum P-8 on Growth Performance and Gut Microbiota of Weaned…"}, {"acc": "PRJNA801914", "pmid": "38982403", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of spraying Lactobacillus plantarum P-8 on growth characteristics of neonatal pig…"}]}, "wang jd": {"display": "Wang JD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA911205", "pmid": "37726348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Psychosocial adversity experienced in utero and early life is associated with variation i…"}]}, "wang jy": {"display": "Wang JY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1428929", "pmid": "42022809", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota and Metabolome Signatures in Preterm Infants with High versus Low Risk for…"}]}, "wang k": {"display": "Wang K", "group": false, "n_studies": 8, "studies": [{"acc": "PRJNA1367284", "pmid": "38575146", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Probiotics mixture suppresses diet-induced MASLD: Fecal metagenomics of mice sample"}, {"acc": "PRJNA273761", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA327106", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA396794", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA63661", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "wang l": {"display": "Wang L", "group": false, "n_studies": 9, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}, {"acc": "PRJNA322324", "pmid": "34673119", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}, {"acc": "PRJNA484151", "pmid": "31379808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural and Urban infant''s fecal microbiota study"}, {"acc": "PRJNA644022", "pmid": "33891391", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiomes in algae biofilm and activated sludge under comparative operating conditions"}, {"acc": "PRJNA705894", "pmid": "33883261", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenomics of Belgian mosquitoes"}, {"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}, {"acc": "PRJNA880624", "pmid": "38742876", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral metagenomics of single Belgian field mosquitoes."}, {"acc": "PRJNA938144", "pmid": "37754563", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HOLA gut microbiome"}, {"acc": "PRJNA961946", "pmid": "37386612", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Human Genome sequencing and assembly"}]}, "wang lq": {"display": "Wang LQ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA936783", "pmid": "35486954", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Draft genome sequences of Group B Streptococcus isolates from infected infants or children"}]}, "wang lx": {"display": "Wang LX", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1428929", "pmid": "42022809", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota and Metabolome Signatures in Preterm Infants with High versus Low Risk for…"}]}, "wang m": {"display": "Wang M", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB12669", "pmid": "27583441", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB23052", "pmid": "33510860", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJEB23052", "pmid": "41511111", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJEB2778", "pmid": "22546241", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mutualism between gut microbiota and the host as revealed in a comparative study of breas…"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA516054", "pmid": "33510860", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Whole metagenomic analysis of the enteric microbiota in children with autism spectrum dis…"}, {"acc": "PRJNA656389", "pmid": "38365259", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of the digestive tract of buffalo"}, {"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}, {"acc": "PRJNA657455", "pmid": "38365259", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}, {"acc": "PRJNA752888", "pmid": "39509330", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Longitudinal saliva bacteriome and early childhood caries"}, {"acc": "PRJNA778397", "pmid": "39858934", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal Metagenome Sequences of STRONG Kids 2 Birth Cohort Study"}]}, "wang md": {"display": "Wang MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}]}, "wang ml": {"display": "Wang ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "wang n": {"display": "Wang N", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1425751", "pmid": "41994268", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome"}, {"acc": "PRJNA876377", "pmid": "37007478", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soil microbiome of grassland bulk soil Metagenome"}]}, "wang p": {"display": "Wang P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA427267", "pmid": "29235710", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pearl River metagenomics Raw sequence reads"}]}, "wang q": {"display": "Wang Q", "group": false, "n_studies": 9, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}, {"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}, {"acc": "PRJNA1010809", "pmid": "37674718", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Role of P. gingivalis in microbial diversity and composition of dental plaque"}, {"acc": "PRJNA1010809", "pmid": "38230927", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Role of P. gingivalis in microbial diversity and composition of dental plaque"}, {"acc": "PRJNA1119243", "pmid": "38947127", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbial Metabolism Analysis in the Cecum of New Zealand Rabbits under Short-Term Fatten…"}, {"acc": "PRJNA1160290", "pmid": "39416080", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and characteristics of the oral microbiome across race and ethnicity"}, {"acc": "PRJNA1160290", "pmid": "39769067", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and characteristics of the oral microbiome across race and ethnicity"}, {"acc": "PRJNA1402009", "pmid": "41726387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "faeces of British shorthair Raw sequence reads"}, {"acc": "PRJNA1482867", "pmid": "42428114", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of dental plaque microbiomes before and after non-sur…"}, {"acc": "PRJNA1482867", "pmid": "42589241", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of dental plaque microbiomes before and after non-sur…"}, {"acc": "PRJNA633948", "pmid": "35263515", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole genome sequencing of SARS-CoV-2 clinical isolates"}, {"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "wang r": {"display": "Wang R", "group": false, "n_studies": 5, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}, {"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}, {"acc": "PRJNA801796", "pmid": "37482605", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Upper respiratory tract virus infection alters the host microbial feature"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}, {"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "wang s": {"display": "Wang S", "group": false, "n_studies": 56, "studies": [{"acc": "PRJEB21259", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "AMR_metagenomic_sequencing"}, {"acc": "PRJEB24006", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB27928", "pmid": "36050292", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB27928", "pmid": "38424077", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB32631", "pmid": "33960282", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "36050292", "pos": "last", "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB32731", "pmid": "38424077", "pos": "last", "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB36820", "pmid": "36050292", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB36820", "pmid": "38424077", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB39610", "pmid": "41025564", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB61771", "pmid": "37719673", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "RICU NTM study"}, {"acc": "PRJEB6456", "pmid": "33960282", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9524", "pmid": "38424077", "pos": "last", "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Expanded Enteric Virome and Altered Bacterial Microbiome in Acquired Immunodeficiency Syn…"}, {"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}, {"acc": "PRJNA1148165", "pmid": "39947133", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut metagenomic samples of IBD patients"}, {"acc": "PRJNA1151839", "pmid": "39663251", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Salivary microbiome in burning mouth syndrome"}, {"acc": "PRJNA1338803", "pmid": "41421358", "pos": null, "reason_code": "host_synthetic", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of faecal fermentation in vitro"}, {"acc": "PRJNA272371", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41796297", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA301903", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA301903", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "33960282", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "33960282", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "33960282", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "33960282", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "33960282", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA385126", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA387903", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Intestinal Virome Changes Precede Autoimmunity in Type I Diabetes Susceptible Children"}, {"acc": "PRJNA390646", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA390646", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA396794", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA407341", "pmid": "38424077", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA422434", "pmid": "41421358", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA436359", "pmid": "41796297", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbial factors implicated in disease progression and treatment response in pediatr…"}, {"acc": "PRJNA436562", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA446038", "pmid": "38424077", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "33960282", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA491626", "pmid": "38424077", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut virome of Cameroonians living in close proximity with bats"}, {"acc": "PRJNA521878", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA521878", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA545408", "pmid": "38424077", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Longitudinal study of the human gut virome"}, {"acc": "PRJNA555020", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA562766", "pmid": "36050292", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA562766", "pmid": "38424077", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA657818", "pmid": "36050292", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA657818", "pmid": "38424077", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA725613", "pmid": "34307461", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "colorectal gut microbiota"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "wang sg": {"display": "Wang SG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843211", "pmid": "36153619", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "the renal pelvis urobiome in the unilateral kidney stone patients"}]}, "wang w": {"display": "Wang W", "group": false, "n_studies": 8, "studies": [{"acc": "PRJDB28401", "pmid": "37261381", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenome investigation of ocular microbiota of cataract patients with and without type…"}, {"acc": "PRJDB29433", "pmid": "39510074", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nanopore-based metagenomic sequencing analysis of control subjects and patients with AD.…"}, {"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}, {"acc": "PRJNA1011899", "pmid": "40155393", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Collaborative spiking study 2B for high throughput sequencing for virus detection"}, {"acc": "PRJNA1052964", "pmid": "39034349", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA1052964", "pmid": "40860434", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA474601", "pmid": "29988510", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Loss of intestinal microbes in cholecystectomy patients"}, {"acc": "PRJNA494875", "pmid": "30914068", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Reconstructions of Gut Microbiome in Weanling Pigs"}, {"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}]}, "wang x": {"display": "Wang X", "group": false, "n_studies": 15, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}, {"acc": "PRJDB38192", "pmid": "37674580", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Utility of clinical metagenomics in diagnosing malignancies in a cohort of patients with…"}, {"acc": "PRJEB14607", "pmid": "25721383", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "By taking three metagenomic approaches to reveal the microplankton communities from compo…"}, {"acc": "PRJNA1005597", "pmid": "37896845", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "feces metagenome Metagenome"}, {"acc": "PRJNA1029896", "pmid": "39227902", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}, {"acc": "PRJNA336061", "pmid": "28801639", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prevotella enterotype related metagenome sequencing"}, {"acc": "PRJNA589343", "pmid": "32912596", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The gut microbiota changes in Chinese children with autism spectrum disorders"}, {"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}, {"acc": "PRJNA660305", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism, up-regulated colon inf…"}, {"acc": "PRJNA660966", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism and up-regulated colon…"}, {"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}, {"acc": "PRJNA841246", "pmid": "35765950", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Feline panleukopenia and healthy control feline faecal samples"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}, {"acc": "PRJNA994670", "pmid": "39242698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial community characterization and molecular resistance monitoring in geriatric int…"}]}, "wang xj": {"display": "Wang XJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA778020", "pmid": "35089209", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Clinical metagenomic sequencing for rapid diagnosis of Neonatal meningitis caused by Urea…"}]}, "wang xm": {"display": "Wang XM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB40947", "pmid": "38745649", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Evaluation of the effect of Fangyu acid lowering granules on improving Hyperuricemia (PRJ…"}]}, "wang xw": {"display": "Wang XW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA932948", "pmid": "37452065", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Dysbiosys of the gut microbiota in Thai hepatocellular carcinoma and intrahepatic cholang…"}]}, "wang y": {"display": "Wang Y", "group": false, "n_studies": 20, "studies": [{"acc": "PRJDB24652", "pmid": "35876474", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Tea (Camellia sinensis) microbiomes (PRJCA007800)"}, {"acc": "PRJEB12669", "pmid": "27583441", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1005597", "pmid": "37896845", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "feces metagenome Metagenome"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA1218236", "pmid": "40144527", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Analysis of Intragastric Administration of Donkey Milk on Mouse Immunity Using Gut Microb…"}, {"acc": "PRJNA290380", "pmid": "38193687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA398089", "pmid": "35614211", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA401977", "pmid": "41620634", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome from patients with gestational diabetes mellitus"}, {"acc": "PRJNA475246", "pmid": "38486699", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA477424", "pmid": "30619206", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "panda gut metagenome raw sequence reads Raw sequence reads"}, {"acc": "PRJNA551026", "pmid": "32130897", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Monogenic skin disease driven by staphylococcal dysbiosis"}, {"acc": "PRJNA589343", "pmid": "32912596", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The gut microbiota changes in Chinese children with autism spectrum disorders"}, {"acc": "PRJNA592843", "pmid": "32100127", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Therapeutic effects of the in vitro cultured human gut microbiota as transplants on alter…"}, {"acc": "PRJNA605028", "pmid": "32690954", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Genome sequencing and assembly"}, {"acc": "PRJNA605028", "pmid": "38263861", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Genome sequencing and assembly"}, {"acc": "PRJNA675914", "pmid": "34302348", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "hydrothermally inactive sulfides metagenomes"}, {"acc": "PRJNA734860", "pmid": "32258950", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA776087", "pmid": "36973820", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}, {"acc": "PRJNA994670", "pmid": "39242698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial community characterization and molecular resistance monitoring in geriatric int…"}]}, "wang ye": {"display": "Wang YE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA812695", "pmid": "37714338", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Metagenome"}]}, "wang yj": {"display": "Wang YJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1052964", "pmid": "40860434", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}]}, "wang z": {"display": "Wang Z", "group": false, "n_studies": 10, "studies": [{"acc": "PRJEB23052", "pmid": "41511111", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJNA1025870", "pmid": "38778483", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota transplantation significantly improved respiratory failure of amyotrophi…"}, {"acc": "PRJNA1151839", "pmid": "39663251", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Salivary microbiome in burning mouth syndrome"}, {"acc": "PRJNA1170175", "pmid": "40248366", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Vaginal Virome of Healthy Women and Patients with Vaginitis"}, {"acc": "PRJNA202380", "pmid": "24907284", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Sheep rumen microbiome"}, {"acc": "PRJNA48479", "pmid": "38882493", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}, {"acc": "PRJNA847006", "pmid": "37049457", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA847006", "pmid": "37280255", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA847017", "pmid": "37280255", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads of GF mice"}, {"acc": "PRJNA877820", "pmid": "36539432", "pos": "last", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "wang zw": {"display": "Wang ZW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA539906", "pmid": "31708889", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Chinese alligator gut metagenome"}]}, "wang zx": {"display": "Wang ZX", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}]}, "wani g": {"display": "Wani G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}]}, "wani k": {"display": "Wani K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "wannerberger k": {"display": "Wannerberger K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37731", "pmid": "33816334", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}]}, "ward dv": {"display": "Ward DV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA63661", "pmid": "25332767", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA63661", "pmid": "26110908", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "wardenburg jb": {"display": "Wardenburg JB", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB8347", "pmid": "42259839", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Temporal and technical variability of human gut metagenomes"}, {"acc": "PRJNA1148144", "pmid": "42259839", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Biosignatures of late-onset extraintestinal bacterial infections"}, {"acc": "PRJNA301903", "pmid": "42259839", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA48479", "pmid": "42259839", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA489090", "pmid": "42259839", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA799247", "pmid": "42259839", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA884103", "pmid": "42259839", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}]}, "wardenburg k": {"display": "Wardenburg K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884103", "pmid": "37134153", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}]}, "wargo ja": {"display": "Wargo JA", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}, {"acc": "PRJNA770295", "pmid": "34941392", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "warinner c": {"display": "Warinner C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}, {"acc": "PRJEB35362", "pmid": "32337106", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}, {"acc": "PRJNA445215", "pmid": "29959351", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "wark pa": {"display": "Wark PA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA562766", "pmid": "33208745", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}]}, "warmoes mo": {"display": "Warmoes MO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "warner bb": {"display": "Warner BB", "group": false, "n_studies": 9, "studies": [{"acc": "PRJNA1060349", "pmid": "40175737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Weaning accelerates and transforms within-host adaptation in the infant gut microbiome"}, {"acc": "PRJNA301903", "pmid": "27572443", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA301903", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA46337", "pmid": "28274256", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Neonatal Microbiome and Necrotizing Enterocolitis"}, {"acc": "PRJNA473126", "pmid": "30374198", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA701982", "pmid": "34264786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic-driven intestinal dysbiosis in paediatric SBS alters microbiome functions and…"}, {"acc": "PRJNA884103", "pmid": "37134153", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Gut residence of bloodstream infection pathogens in the NICU"}, {"acc": "PRJNA911205", "pmid": "37726348", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Psychosocial adversity experienced in utero and early life is associated with variation i…"}, {"acc": "PRJNA938144", "pmid": "37754563", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HOLA gut microbiome"}]}, "warner bw": {"display": "Warner BW", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA301903", "pmid": "34264786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "34264786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "34264786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA701982", "pmid": "34264786", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic-driven intestinal dysbiosis in paediatric SBS alters microbiome functions and…"}]}, "warr a": {"display": "Warr A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21624", "pmid": "29491419", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of the rumen of Scottish cattle."}]}, "warr b": {"display": "Warr B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1279254", "pmid": "41562608", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of synovial joint fluid collected from feedlot cattle. Raw sequenc…"}]}, "warren ak": {"display": "Warren AK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "warren fj": {"display": "Warren FJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA722408", "pmid": "36076058", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}, {"acc": "PRJNA722408", "pmid": null, "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomics data from a colon model experiment linking carbohydrate structure with funct…"}]}, "warren-rhodes ka": {"display": "Warren-Rhodes KA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "washburne a": {"display": "Washburne A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29169", "pmid": "31222023", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Establishing microbial composition measurement standards with reference frames"}]}, "washington mk": {"display": "Washington MK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA986525", "pmid": "38441000", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "2'-fucoysllactose treatment of C57BL/6 adult mice fecal metagenomics"}]}, "washington py": {"display": "Washington PY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "34666677", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "wasmund k": {"display": "Wasmund K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1033532", "pmid": "38014294", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Evaluating the impact of pharmaceuticals on the human gut microbiome Raw sequence reads"}]}, "wasserscheid j": {"display": "Wasserscheid J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629517", "pmid": "34145447", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "DFO - beads in situ microcosms Raw sequence reads"}]}, "wasson pa": {"display": "Wasson PA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1107349", "pmid": "38980166", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Polysaccharide degradation by microbial communities"}]}, "waszak sm": {"display": "Waszak SM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}]}, "watai h": {"display": "Watai H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10879", "pmid": "36722950", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Seasonal dynamics of prokaryotes and viruses in Osaka bay"}]}, "watanabe e": {"display": "Watanabe E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "watanabe k": {"display": "Watanabe K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "watanabe t": {"display": "Watanabe T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB8125", "pmid": "31549291", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metaviromic analyses on crane fecal samples"}]}, "watanabe y": {"display": "Watanabe Y", "group": false, "n_studies": 11, "studies": [{"acc": "PRJDB4176", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB17632", "pmid": "37188713", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Subspecies in the global human gut microbiome"}, {"acc": "PRJEB6070", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6456", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB7774", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJNA217052", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Fiji COMP"}, {"acc": "PRJNA268964", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA290380", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA485056", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}]}, "waters jl": {"display": "Waters JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27308", "pmid": "30974084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome metagenome analysis of stool samples from individuals with low and high saliva…"}]}, "watling jg": {"display": "Watling JG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}]}, "watowich ss": {"display": "Watowich SS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "watson a": {"display": "Watson A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1071720", "pmid": "38572716", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FECBUD Study Fecal Metagenomes"}]}, "watson ar": {"display": "Watson AR", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1121295", "pmid": "38964511", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "FEDEX Study Fecal Metagenomes"}, {"acc": "PRJNA701961", "pmid": "37069665", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA701961", "pmid": null, "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA755324", "pmid": "35421353", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Colonization of the Live Biotherapeutic Product VE303 and Modulation of the Microbiota an…"}]}, "watson d": {"display": "Watson D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA751712", "pmid": "35345612", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "To Probiotic or not to probiotic: using metagenomics to compare the gut microbiome of inf…"}, {"acc": "PRJNA751712", "pmid": "35796792", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "To Probiotic or not to probiotic: using metagenomics to compare the gut microbiome of inf…"}]}, "watson jt": {"display": "Watson JT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28369502", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "watson m": {"display": "Watson M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21624", "pmid": "29491419", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of the rumen of Scottish cattle."}]}, "watson p": {"display": "Watson P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1222153", "pmid": "41547860", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Waltham Catalogue for the Canine Gut Microbiome: A complete taxonomic and functional cata…"}]}, "watson rl": {"display": "Watson RL", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA555020", "pmid": "31676793", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA613032", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life and effects of early life antibiotics, annotated shotgun s…"}, {"acc": "PRJNA613054", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal resistome in early life and effects of early life antibiotics, annotated shotgun se…"}]}, "watts pc": {"display": "Watts PC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA613381", "pmid": "32968071", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut…"}]}, "weakley am": {"display": "Weakley AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}]}, "weaver ct": {"display": "Weaver CT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542320", "pmid": "31700190", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacteria Genome sequencing and assembly"}]}, "webber dm": {"display": "Webber DM", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}]}, "weber d": {"display": "Weber D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "weber s": {"display": "Weber S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14474", "pmid": "28539477", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial colonization and succession in a newly opened hospital"}]}, "webster g": {"display": "Webster G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1235110", "pmid": "39798461", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome"}]}, "wedel h": {"display": "Wedel H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51353", "pmid": "26096600", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human gut metagenomes of SCAPIS Uppsala and Malmo"}]}, "wee b": {"display": "Wee B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "36220843", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "weerapakorn w": {"display": "Weerapakorn W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA637175", "pmid": "33668840", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome of Thai adults"}]}, "wegen s": {"display": "Wegen S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "wegmann u": {"display": "Wegmann U", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14935", "pmid": "29096601", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Term and preterm shotgun samples"}]}, "wehrhahn mc": {"display": "Wehrhahn MC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1200893", "pmid": "41809988", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}, {"acc": "PRJNA1241475", "pmid": "41861844", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycoplasma pneumoniae WGS"}]}, "wehrli b": {"display": "Wehrli B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675607", "pmid": null, "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Biogeochemistry study on Lake Tanganyika in Tanzania"}]}, "wei cl": {"display": "Wei CL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA16209", "pmid": "16336043", "pos": null, "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of RNA viruses in human feces"}]}, "wei e": {"display": "Wei E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB59277", "pmid": "37009508", "pos": "last", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "PICU mngs PCP"}, {"acc": "PRJEB73551", "pmid": "38912204", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "PICU cases"}]}, "wei g": {"display": "Wei G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA775062", "pmid": "41877288", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Landscapes of bacterial, viral and metabolic signatures and their interaction in early-we…"}]}, "wei h": {"display": "Wei H", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA775062", "pmid": "35913177", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Landscapes of bacterial, viral and metabolic signatures and their interaction in early-we…"}, {"acc": "PRJNA847006", "pmid": "37049457", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA847006", "pmid": "37280255", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA847017", "pmid": "37280255", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads of GF mice"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "wei j": {"display": "Wei J", "group": false, "n_studies": 8, "studies": [{"acc": "PRJNA1052964", "pmid": "40860434", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA273761", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA327106", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA396794", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA63661", "pmid": "36081629", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "wei l": {"display": "Wei L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1119243", "pmid": "38947127", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbial Metabolism Analysis in the Cecum of New Zealand Rabbits under Short-Term Fatten…"}, {"acc": "PRJNA730640", "pmid": "34262484", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}]}, "wei m": {"display": "Wei M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB29433", "pmid": "39510074", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nanopore-based metagenomic sequencing analysis of control subjects and patients with AD.…"}]}, "wei p": {"display": "Wei P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA734860", "pmid": "32258950", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA734860", "pmid": "34633706", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA734860", "pmid": "35477306", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}]}, "wei s": {"display": "Wei S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA812583", "pmid": "36352460", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level metagenomics reveal microbial transfer from donor to infant after fecal micr…"}]}, "wei w": {"display": "Wei W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB39536", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Large-scale single-cell long-read genomics enables high-resolution microbiome profiling (…"}]}, "wei x": {"display": "Wei X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA936938", "pmid": "36992458", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "searching for viruses in Asiatic toad Raw sequence reads"}]}, "wei xx": {"display": "Wei XX", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1428929", "pmid": "42022809", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota and Metabolome Signatures in Preterm Infants with High versus Low Risk for…"}]}, "wei y": {"display": "Wei Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}, {"acc": "PRJNA725613", "pmid": "34307461", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "colorectal gut microbiota"}]}, "weichhart t": {"display": "Weichhart T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "weidenmaier c": {"display": "Weidenmaier C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB10391", "pmid": "26369961", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of ciprofloxacin pertubation on the intestinal resistome and microbiota in two hea…"}]}, "weidner m": {"display": "Weidner M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}]}, "weightman aj": {"display": "Weightman AJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1235110", "pmid": "39798461", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome"}]}, "weihe c": {"display": "Weihe C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA647720", "pmid": "33727392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiome sequencing during a high fiber diet intervention"}]}, "weinberg ga": {"display": "Weinberg GA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "weinberger a": {"display": "Weinberger A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "weinert ee": {"display": "Weinert EE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "weingarten ra": {"display": "Weingarten RA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445389", "pmid": "30586509", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Sphingomonas koreensis Genome sequencing and assembly"}]}, "weinheimer-haus em": {"display": "Weinheimer-Haus EM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884688", "pmid": "36778973", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiota and protein source"}]}, "weinstein eg": {"display": "Weinstein EG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA679286", "pmid": "34320399", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Global genome analyses reveal a vast and dynamic anellovirus landscape within the human v…"}]}, "weinstock gm": {"display": "Weinstock GM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA259274", "pmid": "25568281", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Wake Forest Vervet Microbiome Project"}]}, "weir jc": {"display": "Weir JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB1775", "pmid": "23571589", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diagnostic Metagenomics: A Culture-Independent Approach to the Investigation of Bacterial…"}]}, "weis arns c": {"display": "Weis Arns C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA613851", "pmid": "38091183", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "INVESTIGATION OF THE BACTERIAL AND VIRAL DIVERSITY OF DIDELPHID OPOSSUMS FROM BRAZILIAN F…"}]}, "weiss a": {"display": "Weiss A", "group": false, "n_studies": 40, "studies": [{"acc": "PRJEB1220", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB22207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJEB32135", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9576", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA188481", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA221723", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA305507", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA319574", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA322188", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA328899", "pmid": "38172624", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA398089", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA436562", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA485056", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA489090", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA504891", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA510445", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA542703", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA557731", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA633576", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA715601", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA853174", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "weiss e-c": {"display": "Weiss E-C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB77729", "pmid": "39714161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "First-Year Dynamics of the Microbiome in Infants’ Oral and Gastrointestinal Systems"}]}, "weiss ej": {"display": "Weiss EJ", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA510445", "pmid": "31959989", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA510445", "pmid": "34525965", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA516442", "pmid": "30784601", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Depletion of human DNA from complex clinical samples for metagenomic sequencing"}, {"acc": "PRJNA530252", "pmid": "32631930", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effect of cycled, inhaled tobramycin on the sputum microbiome in cystic fibrosis"}]}, "weiss gj": {"display": "Weiss GJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA626477", "pmid": "34002024", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut microbiota Raw sequence reads with and without cancer cachexia"}]}, "weiss sl": {"display": "Weiss SL", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1150154", "pmid": "39251076", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotyp…"}, {"acc": "PRJNA1188190", "pmid": "37113001", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two…"}, {"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "weissenbach j": {"display": "Weissenbach J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA950101", "pmid": "39449105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomes from aquatic ecosystems of the Central Arctic"}]}, "weissenberger g": {"display": "Weissenberger G", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "weiszer k": {"display": "Weiszer K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}]}, "weitkamp jh": {"display": "Weitkamp JH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1502892", "pmid": "40490486", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Associations between antibiotic exposure intensity, intestinal microbiome perturbations,…"}]}, "weitzmann mn": {"display": "Weitzmann MN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1071073", "pmid": "38530358", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Transgender Mouse Bone Microbiome"}]}, "welch aa": {"display": "Welch AA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB72531", "pmid": "38424099", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prebiotic intervention for muscle function and cognition"}]}, "welch nl": {"display": "Welch NL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "weldon k": {"display": "Weldon K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}]}, "weldon kc": {"display": "Weldon KC", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB38352", "pmid": "33026068", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome an…"}, {"acc": "PRJEB52147", "pmid": "35440708", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Association Between Milk Feedings in the Preterm Population, the Microbiome and Risk…"}]}, "wellejus a": {"display": "Wellejus A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1159139", "pmid": "39377603", "pos": "last", "reason_code": "host_synthetic", "src": "L", "status": "excluded", "title_short": "I-TIM-2 validation (VAL)"}]}, "weller c": {"display": "Weller C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1198110", "pmid": "40439559", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Clinical infection by Francisella tularensis ssp. holarctica in stranded beluga whales fr…"}]}, "wells a": {"display": "Wells A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA259274", "pmid": "25568281", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Wake Forest Vervet Microbiome Project"}]}, "wells pm": {"display": "Wells PM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA957107", "pmid": "38291926", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Imrabiome - Rheumatoid project"}]}, "welsh rm": {"display": "Welsh RM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}]}, "wemheuer b": {"display": "Wemheuer B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA240141", "pmid": "25208077", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "wen b": {"display": "Wen B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB15111", "pmid": "26932197", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}, {"acc": "PRJNA961946", "pmid": "37386612", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Human Genome sequencing and assembly"}]}, "wen j": {"display": "Wen J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA812695", "pmid": "37714338", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Metagenome"}]}, "wen r": {"display": "Wen R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA401977", "pmid": "41620634", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome from patients with gestational diabetes mellitus"}]}, "wen y": {"display": "Wen Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1201756", "pmid": "37940330", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiome Metagenome"}]}, "wendm st": {"display": "Wendm ST", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1066815", "pmid": "38963827", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human rhinovirus A, B and C in Washington State"}, {"acc": "PRJNA723895", "pmid": "38963827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Rhinovirus NGS"}]}, "wendoh j": {"display": "Wendoh J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA526942", "pmid": "33137401", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "uncultured crAssphage strain:ZA | isolates :M186D4, C0521BW15,C0526BW15, C0521BD4, and C0…"}]}, "wendt s": {"display": "Wendt S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "27974546", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "weng c": {"display": "Weng C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1184213", "pmid": "40765991", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The microbiota-dependent effect of physical activity on Crohn's disease"}]}, "weng s": {"display": "Weng S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675914", "pmid": "34302348", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "hydrothermally inactive sulfides metagenomes"}]}, "wenne m": {"display": "Wenne M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1262354", "pmid": "41603547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMBARK - Establishing a Monitoring Baseline for Antimicrobial Resistance in Key environme…"}]}, "wentworth jm": {"display": "Wentworth JM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87209", "pmid": "41339319", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Australian infant gut microbiome metagenomics"}]}, "werner f": {"display": "Werner F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA240141", "pmid": "36284144", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Elephant feces Metagenome"}]}, "wesseling h": {"display": "Wesseling H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961698", "pmid": "37610205", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Very Early Life Microbiome and Metabolome Correlates with Primary Vaccination Variability…"}]}, "wesselingh sl": {"display": "Wesselingh SL", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA503909", "pmid": "33074097", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Torres Strait Islands Health Surveys, 2016"}, {"acc": "PRJNA807448", "pmid": "40175554", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Antibiotics and Immune Responses Study"}]}, "west ce": {"display": "West CE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB89491", "pmid": "42057198", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "LucKi Gut - Longitudinal metagenomic sequencing of infant gut microbiota"}]}, "west k": {"display": "West K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}]}, "west ka": {"display": "West KA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA895487", "pmid": "36220843", "pos": "first", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "west pt": {"display": "West PT", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA376580", "pmid": "30770768", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hospital (NICU) surfaces and sinks"}, {"acc": "PRJNA417343", "pmid": null, "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y5 Cohort)"}, {"acc": "PRJNA717139", "pmid": "34154658", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitaliz…"}]}, "west-roberts j": {"display": "West-Roberts J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA914281", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Tandem repeats in giant archaeal Borg elements undergo rapid evolution and create new int…"}]}, "westaway jaf": {"display": "Westaway JAF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA751712", "pmid": "35345612", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "To Probiotic or not to probiotic: using metagenomics to compare the gut microbiome of inf…"}, {"acc": "PRJNA751712", "pmid": "35796792", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "To Probiotic or not to probiotic: using metagenomics to compare the gut microbiome of inf…"}]}, "westerhoff m": {"display": "Westerhoff M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA285502", "pmid": "26288277", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiota transplantation (FMT) for ulcerative colitis"}]}, "westerhuis ja": {"display": "Westerhuis JA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB32631", "pmid": "40396737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}]}, "westerlund-wikstrom b": {"display": "Westerlund-Wikström B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893826", "pmid": "38622998", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Culture-independent long read metagenomic diagnostics for genomic surveillance and infect…"}]}, "westin j": {"display": "Westin J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "westmeijer g": {"display": "Westmeijer G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA950101", "pmid": "39449105", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomes from aquatic ecosystems of the Central Arctic"}]}, "weston cq": {"display": "Weston CQ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA255985", "pmid": "25279840", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human saliva, creek water, and synthetic metagenomic samples used in selective DNA isolat…"}]}, "wetzel d": {"display": "Wetzel D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1307628", "pmid": "41461922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbial oral-gut translocation in advanced chronic liver disease is linked to exacerbat…"}]}, "wex h": {"display": "Wex H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA811790", "pmid": "37816747", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial and viral dispersal along the natural water cycle"}]}, "weyer nm": {"display": "Weyer NM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA942254", "pmid": "37650612", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomics of fecal samples from ant-eating mammal species"}]}, "weyrich ls": {"display": "Weyrich LS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA688065", "pmid": "33811235", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effectiveness of decontamination protocols when analyzing ancient DNA preserved in dental…"}]}, "whangbo js": {"display": "Whangbo JS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA787952", "pmid": "35239511", "pos": "last", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}, {"acc": "PRJNA787952", "pmid": null, "pos": "last", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Raw_metagenomic_sequencing_for_Pediatrics_Gut_Decontamination_NCT02641236"}]}, "whelan k": {"display": "Whelan K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB72531", "pmid": "38424099", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prebiotic intervention for muscle function and cognition"}]}, "white ba": {"display": "White BA", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA312222", "pmid": "27303377", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genome reconstructions from human gut metagenomes"}, {"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}, {"acc": "PRJNA49397", "pmid": "20962874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Canine gastrointestinal metagenome"}, {"acc": "PRJNA646650", "pmid": "33658330", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "In vivo competitions between Fibrobacter succinogenes, Ruminococcus flavefaciens and Rumi…"}]}, "white ch": {"display": "White CH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961698", "pmid": "37610205", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Very Early Life Microbiome and Metabolome Correlates with Primary Vaccination Variability…"}]}, "white jd": {"display": "White JD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019894", "pmid": "37835668", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Bos taurus breed:Angus Targeted Locus (Loci)"}]}, "white jr": {"display": "White JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA793907", "pmid": "35908379", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial 16S rRNA gene sequences from fecal samples of prostate cancer patients treated…"}]}, "white mg": {"display": "White MG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "white o": {"display": "White O", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA275349", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA48479", "pmid": "28953883", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "white sr": {"display": "White SR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB20527", "pmid": "26627545", "pos": "last", "reason_code": "assay_amplicon", "src": "B", "status": "excluded", "title_short": "Corticosteroid therapy and airflow obstruction influence the bronchial microbiome, which…"}]}, "white-williams c": {"display": "White-Williams C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912638", "pmid": "37213047", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MICROBIOME IN AGING GUT AND BRAIN (MiaGB) STUDY"}]}, "whitehouse ca": {"display": "Whitehouse CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA336518", "pmid": "29954907", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}, {"acc": "PRJNA336518", "pmid": "29954914", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Live Microbial Ingredients Survey"}]}, "whitehouse s": {"display": "Whitehouse S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29237", "pmid": "30838178", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "16S rRNA gene amplicon and metagenomic shotgun sequencing reads from a pediatric acute ly…"}]}, "whiteley pl": {"display": "Whiteley PL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA596855", "pmid": "31383310", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Disease surveillance in wild Victorian cacatuids"}]}, "whiteson h": {"display": "Whiteson H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA945408", "pmid": "38085102", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prev…"}]}, "whiteson k": {"display": "Whiteson K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA546004", "pmid": "31451108", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Maturation of the infant rhesus macaque (Macaca mulatta) gut microbiome and its role in t…"}, {"acc": "PRJNA647720", "pmid": "33727392", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiome sequencing during a high fiber diet intervention"}]}, "whitfield st": {"display": "Whitfield ST", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB14383", "pmid": "34551287", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Oral microbiome samples from the Philippines"}, {"acc": "PRJNA275349", "pmid": "34551287", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Environment Metagenome"}, {"acc": "PRJNA48479", "pmid": "34551287", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "whittle mj": {"display": "Whittle MJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1222153", "pmid": "41547860", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Waltham Catalogue for the Canine Gut Microbiome: A complete taxonomic and functional cata…"}]}, "whyte t": {"display": "Whyte T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28818890", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "wiberg-itzel e": {"display": "Wiberg-Itzel E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB37731", "pmid": "42203854", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}, {"acc": "PRJEB38528", "pmid": "42203854", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for bab…"}]}, "wibowo m": {"display": "Wibowo M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}]}, "wichels a": {"display": "Wichels A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21210", "pmid": "29866485", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "North Sea Virome"}]}, "wichmann a": {"display": "Wichmann A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1159139", "pmid": "39377603", "pos": null, "reason_code": "host_synthetic", "src": "L", "status": "excluded", "title_short": "I-TIM-2 validation (VAL)"}]}, "wichmann f": {"display": "Wichmann F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA599270", "pmid": "32179689", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Honey bee gut virome"}]}, "wicke t": {"display": "Wicke T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA381395", "pmid": "28843021", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut and nasal microbiome in Parkinson''s disease"}]}, "widdowson m": {"display": "Widdowson M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB46943", "pmid": "41387423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA916259", "pmid": "40140473", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}]}, "wiebe po": {"display": "Wiebe PO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1328708", "pmid": "41472057", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "wieder i": {"display": "Wieder I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}]}, "wiedmann m": {"display": "Wiedmann M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA667736", "pmid": null, "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Milk Metagenome Anomaly Detection Project"}]}, "wieg c": {"display": "Wieg C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "wiegandt a": {"display": "Wiegandt A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15376", "pmid": "29067007", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome, metatranscriptome and exo-proteome analyses identify molecular keys and main…"}]}, "wiehlmann l": {"display": "Wiehlmann L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB38221", "pmid": "33319812", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Airway metagenome of healthy infants and infants with cystic fibrosis"}, {"acc": "PRJEB52640", "pmid": "37474785", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Longitudinal development of the airway metagenome of preterm very low birth weight infant…"}]}, "wieler n": {"display": "Wieler N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "wiens c": {"display": "Wiens C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1188787", "pmid": "40440428", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium lepromatosis genomic data"}]}, "wierzbicka-wos a": {"display": "Wierzbicka-Woś A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "wiesnoski dh": {"display": "Wiesnoski DH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}]}, "wijmenga c": {"display": "Wijmenga C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}]}, "wilber jc": {"display": "Wilber JC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA507824", "pmid": "30742071", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}]}, "wilck n": {"display": "Wilck N", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}, {"acc": "PRJNA698459", "pmid": "33785752", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fasting alters the gut microbiome with sustained blood pressure and body weight reduction…"}]}, "wilcox s": {"display": "Wilcox S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39143045", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}, {"acc": "PRJNA1081952", "pmid": "39367018", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "wilkes h": {"display": "Wilkes H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35337", "pmid": "11075884", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Analysis of freeze-dried faecal samples collected from individuals between 1974 and 1980"}]}, "wilkins mr": {"display": "Wilkins MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB14718", "pmid": "34737728", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Study of the changes in the metagenome of the groundwater community at Little Forest Lega…"}, {"acc": "PRJEB14718", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Study of the changes in the metagenome of the groundwater community at Little Forest Lega…"}]}, "willassen np": {"display": "Willassen NP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29052", "pmid": "30505830", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}]}, "willems rjl": {"display": "Willems RJL", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}, {"acc": "PRJNA555020", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA613032", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life and effects of early life antibiotics, annotated shotgun s…"}, {"acc": "PRJNA613054", "pmid": "35173154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal resistome in early life and effects of early life antibiotics, annotated shotgun se…"}]}, "willems rpj": {"display": "Willems RPJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB44119", "pmid": "35659906", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut colonisation by extended-spectrum β-lactamase-producing Escherichia coli and its asso…"}]}, "willemsen g": {"display": "Willemsen G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24041", "pmid": "29496731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Selective maternal seeding and environment shape the human gut microbiome"}]}, "willemsen m": {"display": "Willemsen M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA996050", "pmid": "38022530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or…"}]}, "willers m": {"display": "Willers M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52640", "pmid": "37474785", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Longitudinal development of the airway metagenome of preterm very low birth weight infant…"}]}, "willerslev e": {"display": "Willerslev E", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB37914", "pmid": "32699412", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Evidence of human occupation in Mexico around the Last Glacial Maximum"}, {"acc": "PRJEB9021", "pmid": "26062507", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}, {"acc": "PRJNA246597", "pmid": "24568772", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "willette m": {"display": "Willette M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA605836", "pmid": "32769191", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomics of Enterobacteriaceae from wild owls"}]}, "williams a": {"display": "Williams A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}, {"acc": "PRJNA208535", "pmid": "40607829", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "The daily dynamics of the vaginal microbiota before and after bacterial vaginosis"}]}, "williams bt": {"display": "Williams BT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522699", "pmid": "31427729", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}]}, "williams c": {"display": "Williams C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA907387", "pmid": "37014219", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Acid mine drainage metagenomes"}]}, "williams d": {"display": "Williams D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1454889", "pmid": "30337259", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt, Liberia, 2017…"}]}, "williams fmk": {"display": "Williams FMK", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1420872", "pmid": "41027803", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of gut/stool samples Metagenome"}, {"acc": "PRJNA957107", "pmid": "38291926", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Imrabiome - Rheumatoid project"}]}, "williams j": {"display": "Williams J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "williams jv": {"display": "Williams JV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1110763", "pmid": "39652359", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "NVSN Surveillance of RSV - Houston"}]}, "williams mr": {"display": "Williams MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA551026", "pmid": "32130897", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Monogenic skin disease driven by staphylococcal dysbiosis"}]}, "williams rbh": {"display": "Williams RBH", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB17097", "pmid": "40226095", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "St Johns Island Resistome project"}, {"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "williams re": {"display": "Williams RE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB35337", "pmid": "11075884", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Analysis of freeze-dried faecal samples collected from individuals between 1974 and 1980"}]}, "williams s": {"display": "Williams S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1160290", "pmid": "39416080", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and characteristics of the oral microbiome across race and ethnicity"}, {"acc": "PRJNA1160290", "pmid": "39769067", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and characteristics of the oral microbiome across race and ethnicity"}]}, "williams sa": {"display": "Williams SA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "williams scr": {"display": "Williams SCR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "42311381", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "williamson da": {"display": "Williamson DA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA754263", "pmid": "35659903", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "willingham a": {"display": "Willingham A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA322324", "pmid": "28369502", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "willis ad": {"display": "Willis AD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1139690", "pmid": "40340756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "HOME Study fecal samples"}]}, "willmann m": {"display": "Willmann M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB10391", "pmid": "26369961", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of ciprofloxacin pertubation on the intestinal resistome and microbiota in two hea…"}, {"acc": "PRJEB12272", "pmid": "27984120", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A statistical test for the detection of inhomogeneity in metagenomic samples"}]}, "wills b": {"display": "Wills B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1156595", "pmid": "39827146", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics: a new frontier for routine pathology testing of gastrointestinal pathogens"}]}, "wilmes p": {"display": "Wilmes P", "group": false, "n_studies": 8, "studies": [{"acc": "PRJNA230567", "pmid": "25424998", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "26505828", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "28721231", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "29075368", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33077707", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA289586", "pmid": "27723761", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA289586", "pmid": "30747106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA379120", "pmid": "30504906", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "36717704", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "39739091", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA381395", "pmid": "28843021", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut and nasal microbiome in Parkinson''s disease"}, {"acc": "PRJNA489090", "pmid": "36717704", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA595749", "pmid": "36717704", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}, {"acc": "PRJNA595749", "pmid": "39739091", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COSMIC2 - Persistence of birth mode-dependent effects on gut microbiome composition, immu…"}, {"acc": "PRJNA781406", "pmid": "35444202", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Vanishing Glaciers Project"}, {"acc": "PRJNA782492", "pmid": "40707492", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MiBiPa - Non-invasive microbiome-derived multi-omic biomarkers for the early-stage detect…"}]}, "wilson b": {"display": "Wilson B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA707065", "pmid": "35075183", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "NiPPeR Study - pilot microbiome investigation"}]}, "wilson bc": {"display": "Wilson BC", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA637785", "pmid": "33346848", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA637785", "pmid": "33985595", "pos": "first", "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)"}, {"acc": "PRJNA701480", "pmid": "34186487", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Vaginal seeding in babies born by caesarean section (ECOBABe trial) - shotgun metagenomic…"}]}, "wilson mr": {"display": "Wilson MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA234452", "pmid": "24896819", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}]}, "wilson ng": {"display": "Wilson NG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB59709", "pmid": "38560624", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut metagenome harbors metabolic and antibiotic resistance signatures of established…"}]}, "wilson ph": {"display": "Wilson PH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA901256", "pmid": "12117207", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Acrossocheilus fasciatus Raw sequence reads"}]}, "wilson wa": {"display": "Wilson WA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45845", "pmid": "715442", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The Cysteine Protease Giardipain-1 from Giardia duodenalis Contributes to the Disruption…"}]}, "wilson-o'brien a": {"display": "Wilson-O'Brien A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA715634", "pmid": "34035441", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Novel Strain Level Resolution of Crohns Disease Mucosa-Associated Microbiota via an ex vi…"}]}, "wilus d": {"display": "Wilus D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1482867", "pmid": "42428114", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of dental plaque microbiomes before and after non-sur…"}, {"acc": "PRJNA1482867", "pmid": "42589241", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of dental plaque microbiomes before and after non-sur…"}]}, "wimpenny t": {"display": "Wimpenny T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1200893", "pmid": "41809988", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}]}, "wincker p": {"display": "Wincker P", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB51655", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station HCMR-1 (HCMR)"}, {"acc": "PRJEB51658", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51658", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station NRMCB (SZN)"}, {"acc": "PRJEB51660", "pmid": "40115125", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}, {"acc": "PRJEB51660", "pmid": "41624426", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMO BON Observatory Station PiEGetxo (PiE)"}]}, "wind ll": {"display": "Wind LL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA506850", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "USDA Developing Computational Tools To Identify Critical Control Points For Mitigating Th…"}]}, "wine e": {"display": "Wine E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA690735", "pmid": "36183751", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}]}, "winglee k": {"display": "Winglee K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA349463", "pmid": "28915922", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Urban vs. Rural China Microbiome"}]}, "wink l": {"display": "Wink L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "winkelman jd": {"display": "Winkelman JD", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1042647", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1173239", "pmid": "40763731", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Amino acid competition shapes Acinetobacter baumannii gut carriage"}]}, "winn ka": {"display": "Winn KA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA772730", "pmid": "35071138", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The FOUNDATION Study: Hospital Formulation Of B. infantis EVC001 Utilized In The NICU To…"}]}, "winnicki sm": {"display": "Winnicki SM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}, {"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "winokur g": {"display": "Winokur G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24383", "pmid": "5527411", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Molecular Diagnosis of Orthopedic-Device-Related Infection Directly from Sonication Fluid…"}]}, "winton jr": {"display": "Winton JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "28870221", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "wipperman mf": {"display": "Wipperman MF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445968", "pmid": "28883399", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}, {"acc": "PRJNA445968", "pmid": "30282828", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}]}, "wirbel j": {"display": "Wirbel J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJNA289586", "pmid": "30747106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "wiser ah": {"display": "Wiser AH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB21624", "pmid": "29491419", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of the rumen of Scottish cattle."}]}, "wisgrill l": {"display": "Wisgrill L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1112760", "pmid": "39679616", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic signatures of early life brain damage"}]}, "wishart ds": {"display": "Wishart DS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "witek-mcmanus s": {"display": "Witek-McManus S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB90452", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "E", "status": "excluded", "title_short": "Global diversity of STH"}]}, "witkiewicz w": {"display": "Witkiewicz W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "witt ke": {"display": "Witt KE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657304", "pmid": "33542301", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun Sequencing of Dog Coprolites"}]}, "wittung-stafshede p": {"display": "Wittung-Stafshede P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB17694", "pmid": "27912057", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Di…"}]}, "wlodek me": {"display": "Wlodek ME", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA819247", "pmid": "36060782", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome Raw sequence reads"}]}, "woelk ch": {"display": "Woelk CH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961698", "pmid": "37610205", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Very Early Life Microbiome and Metabolome Correlates with Primary Vaccination Variability…"}]}, "woelnerhanssen b": {"display": "Woelnerhanssen B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB36461", "pmid": "32360114", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Impact of Laparoscopic Roux-en-Y gastric bypass and sleeve gastrectomy on gut microbiota:…"}]}, "woerner j": {"display": "Woerner J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA746290", "pmid": "35210415", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Circulating Microbiome in Myeloid Malignancy"}]}, "woh py": {"display": "Woh PY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB77729", "pmid": "39714161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "First-Year Dynamics of the Microbiome in Infants’ Oral and Gastrointestinal Systems"}]}, "wohl s": {"display": "Wohl S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}, {"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "wojciechowski s": {"display": "Wojciechowski S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA290380", "pmid": "30894435", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "wolf j": {"display": "Wolf J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA633381", "pmid": "33662387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "IgA deficiency microbiota"}]}, "wolf p": {"display": "Wolf P", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1108908", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1108960", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}, {"acc": "PRJNA1109334", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Archaea on human skin: AOA as integral members of the human skin microbiome"}]}, "wolf yi": {"display": "Wolf YI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA605028", "pmid": "32690954", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Genome sequencing and assembly"}]}, "wolfe nd": {"display": "Wolfe ND", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA80601", "pmid": "23554892", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Characterization of the nasopharyngeal virome in patients with influenza-like illness of…"}]}, "wolff d": {"display": "Wolff D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "wollenberg rd": {"display": "Wollenberg RD", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB48021", "pmid": "35789207", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of anaerobic digester at Fredericia WWTP with short and long read s…"}, {"acc": "PRJEB48692", "pmid": "35789207", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Sequenced reads for ZymoBIOMICS HMW DNA Standard, including reads from Illumina, Nanopore…"}]}, "wollner j": {"display": "Wöllner J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1139160", "pmid": "40229352", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Uro-Vaxom Pilot"}]}, "woltemate s": {"display": "Woltemate S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB51501", "pmid": "36416760", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Predicting butyrate- and propionate-forming bacteria of gut microbiota from sequencing da…"}, {"acc": "PRJEB51501", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Predicting butyrate- and propionate-forming bacteria of gut microbiota from sequencing da…"}]}, "wolter dj": {"display": "Wolter DJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA516442", "pmid": "30784601", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Depletion of human DNA from complex clinical samples for metagenomic sequencing"}, {"acc": "PRJNA530252", "pmid": "32631930", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effect of cycled, inhaled tobramycin on the sputum microbiome in cystic fibrosis"}]}, "won s": {"display": "Won S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB45443", "pmid": "35485368", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}]}, "wong g": {"display": "Wong G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1355224", "pmid": "42037384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human metagenomic samples Metagenome"}]}, "wong m": {"display": "Wong M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "wong mc": {"display": "Wong MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "wong mk": {"display": "Wong MK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "wong p": {"display": "Wong P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445968", "pmid": "30282828", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease"}]}, "wong rj": {"display": "Wong RJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA288562", "pmid": "26283357", "pos": null, "reason_code": "age_maternal_only", "src": "B", "status": "excluded", "title_short": "Temporal and Spatial Variation of the Human Microbiota During Pregnancy"}]}, "wong sh": {"display": "Wong SH", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA353598", "pmid": "28539351", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}]}, "wong skh": {"display": "Wong SKH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}]}, "wong ssy": {"display": "Wong SSY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA421859", "pmid": "29886344", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sichuan takin Metagenome"}]}, "wong vws": {"display": "Wong VWS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}]}, "wong ww": {"display": "Wong WW", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA832417", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hot and cold deserts across seven continents (unpublished)"}]}, "woo je": {"display": "Woo JE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA976404", "pmid": "37438797", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic assessment of gut microbial communities and risk of severe COVID-19"}]}, "woo pc": {"display": "Woo PC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA573821", "pmid": "32919472", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Whole Meta-genome shotgun sequencing of stool samples from human treated with antibiotics"}]}, "woo pcy": {"display": "Woo PCY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA421859", "pmid": "29886344", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sichuan takin Metagenome"}]}, "wood dl": {"display": "Wood DL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA313232", "pmid": "27388460", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacteroidales group S24-7 population genome recovery"}]}, "wood dla": {"display": "Wood DLA", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1156595", "pmid": "39827146", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics: a new frontier for routine pathology testing of gastrointestinal pathogens"}, {"acc": "PRJNA1200893", "pmid": "41809988", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics Enables Parallel Detection of 176 Clinically Relevant Targets from Faecal Sa…"}, {"acc": "PRJNA562766", "pmid": "33208745", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}]}, "wood lg": {"display": "Wood LG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA562766", "pmid": "33208745", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}]}, "woodcroft bj": {"display": "Woodcroft BJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA907943", "pmid": "36949471", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Characterisation and isolation of novel host-associated Methanocorpusculum species from n…"}]}, "woodcroft kj": {"display": "Woodcroft KJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52295", "pmid": "38117587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Precocious infant gut microbiome reprograms enterocytes and promotes childhood obesity ri…"}]}, "woodford e": {"display": "Woodford E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA872399", "pmid": "36474348", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "woodman se": {"display": "Woodman SE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "woodson ck": {"display": "Woodson CK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB102033", "pmid": "41330369", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lantibiotic-producing bacteria impact microbiome resilience and colonization resistance"}]}, "wooldridge dj": {"display": "Wooldridge DJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15257", "pmid": "28149696", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}, {"acc": "PRJEB15257", "pmid": "34362295", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The antibiotic resistance potential of the preterm infant gut microbiome measured using s…"}]}, "woon jy": {"display": "Woon JY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "worby cj": {"display": "Worby CJ", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB32631", "pmid": "40328944", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJNA1138246", "pmid": "40755247", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal metagenomes of Peruvian children"}, {"acc": "PRJNA400628", "pmid": "40328944", "pos": null, "reason_code": "assay_isolate_genome", "src": "L", "status": "excluded", "title_short": "Escherichia coli Genome sequencing and assembly"}, {"acc": "PRJNA726052", "pmid": "35422497", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effects of drinking water chlorination on childrens intestinal flora and resistomes in Dh…"}]}, "working group of the netherlands donor feces bank": {"display": "Working Group of the Netherlands Donor Feces Bank", "group": true, "n_studies": 1, "studies": [{"acc": "PRJEB44737", "pmid": "34126062", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}]}, "worm m": {"display": "Worm M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA881055", "pmid": "36225266", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An interdisciplinary approach to characterize peanut-allergic patients - first data from…"}]}, "wortmann e": {"display": "Wortmann E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB48251", "pmid": "37230981", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MicrobeMom"}]}, "wright ag": {"display": "Wright AG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA237795", "pmid": "35583332", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Swine feces Targeted Locus (Loci)"}]}, "wright ca": {"display": "Wright CA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA629517", "pmid": "34145447", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "DFO - beads in situ microcosms Raw sequence reads"}]}, "wright g": {"display": "Wright G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352376", "pmid": "28072390", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human metagenome Raw sequence reads"}]}, "wright gd": {"display": "Wright GD", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA805248", "pmid": "36008821", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Targeted Capture of AMR in Preterm infants after probiotic exposure"}, {"acc": "PRJNA980291", "pmid": "38298144", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Targeted Capture of AMR in children in Botswana"}]}, "wright j": {"display": "Wright J", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB32631", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA301903", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA396794", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA532310", "pmid": "34677583", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut metagenome"}]}, "wright m": {"display": "Wright M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37312", "pmid": "33072693", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "The utility of shotgun metagenomics to investigate the carriage of, and longitudinal chan…"}]}, "wright ml": {"display": "Wright ML", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA725416", "pmid": "33996627", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Emory University African American Vaginal, Oral, and Gut Microbiome in Pregnancy Cohort S…"}]}, "wright r": {"display": "Wright R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA394877", "pmid": "31435014", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High frequency intestinal microbiota sampling in allogeneic bone marrow transplant patien…"}]}, "wright rj": {"display": "Wright RJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "wright ro": {"display": "Wright RO", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA975184", "pmid": "39474439", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}, {"acc": "PRJNA975184", "pmid": "39640590", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "PROGRESS Gut Microbiome"}]}, "wright sl": {"display": "Wright SL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA688065", "pmid": "33811235", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Effectiveness of decontamination protocols when analyzing ancient DNA preserved in dental…"}]}, "wrighton kc": {"display": "Wrighton KC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA321218", "pmid": "24137540", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "human gut and groundwater harbor non-photosynthetic bacteria"}]}, "wrobel s": {"display": "Wrobel S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA290380", "pmid": "30894435", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "wu a": {"display": "Wu A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA390646", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA633576", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}]}, "wu al": {"display": "Wu AL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA669352", "pmid": "38366247", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome assembly for sulfonamide subsistence and the transfer of genetic determinants"}]}, "wu b": {"display": "Wu B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA323812", "pmid": "27866251", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "wastewater metagenome Genome sequencing"}]}, "wu c": {"display": "Wu C", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB18471", "pmid": "41695140", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamics of the gut microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA398187", "pmid": "41695140", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human gut metagenome Targeted loci environmental"}]}, "wu ch": {"display": "Wu CH", "group": false, "n_studies": 40, "studies": [{"acc": "PRJEB1220", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB22207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJEB32135", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9576", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA188481", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA221723", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA305507", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA319574", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA322188", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA328899", "pmid": "38172624", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA398089", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA436562", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA485056", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA489090", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA504891", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA510445", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA542703", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA557731", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA633576", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA715601", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA853174", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "wu d": {"display": "Wu D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}]}, "wu g": {"display": "Wu G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1092353", "pmid": "39353343", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Benzothiazole-degrading consortia Raw sequence reads and Metagenome"}]}, "wu gd": {"display": "Wu GD", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1042647", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1042647", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1042647", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1106565", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1106565", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1145027", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1173239", "pmid": "40763731", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Amino acid competition shapes Acinetobacter baumannii gut carriage"}, {"acc": "PRJNA557731", "pmid": "32284564", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "wu h": {"display": "Wu H", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA776087", "pmid": "36973820", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}, {"acc": "PRJNA899808", "pmid": "36543914", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Role of the gut microbiome in lung fibrosis"}, {"acc": "PRJNA994670", "pmid": "39242698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial community characterization and molecular resistance monitoring in geriatric int…"}]}, "wu j": {"display": "Wu J", "group": false, "n_studies": 8, "studies": [{"acc": "PRJNA1390667", "pmid": "42071227", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal sample"}, {"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}, {"acc": "PRJNA237795", "pmid": "35583332", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Swine feces Targeted Locus (Loci)"}, {"acc": "PRJNA290380", "pmid": "38193687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA656389", "pmid": "38365259", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of the digestive tract of buffalo"}, {"acc": "PRJNA657455", "pmid": "38365259", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}, {"acc": "PRJNA924947", "pmid": "38651859", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}]}, "wu jcy": {"display": "Wu JCY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA353598", "pmid": "28539351", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}]}, "wu jf": {"display": "Wu JF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1056831", "pmid": "39006502", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiota of infant cholestasis in Taiwan"}]}, "wu k": {"display": "Wu K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA719915", "pmid": "34465850", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tumor microbiome contributes to an aggressive phenotype in the basal-like subtype of panc…"}]}, "wu l": {"display": "Wu L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB14607", "pmid": "25721383", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "By taking three metagenomic approaches to reveal the microplankton communities from compo…"}, {"acc": "PRJNA433058", "pmid": "37854337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "wu li": {"display": "Wu LI", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1045584", "pmid": "39185682", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of SARS-CoV-2 in stool sample from women living with HIV and HIV-negative women an…"}, {"acc": "PRJNA635738", "pmid": "33727396", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Breast milk Microbiome/Virome of HIV+ Kenyan Women is Not Altered by Immunosuppression"}]}, "wu m": {"display": "Wu M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA209131", "pmid": "23976882", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacter…"}]}, "wu mc": {"display": "Wu MC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA876771", "pmid": "36975801", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Vaginal microbiome metagenome inference accuracy: differential measurement error accordin…"}]}, "wu ms": {"display": "Wu MS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762484", "pmid": "34996879", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota in patients with Parkinson disease"}]}, "wu p": {"display": "Wu P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "wu q": {"display": "Wu Q", "group": false, "n_studies": 19, "studies": [{"acc": "PRJEB6456", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB80456", "pmid": "42214386", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "afmt sample deep sequencing metagenomic and HiC"}, {"acc": "PRJNA273761", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA384716", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA390646", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA473126", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA633576", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA63661", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}]}, "wu r": {"display": "Wu R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "wu s": {"display": "Wu S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}, {"acc": "PRJNA605028", "pmid": "32690954", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Genome sequencing and assembly"}, {"acc": "PRJNA973819", "pmid": "38188910", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Pathogenetic characterization of a Micrococcus luteus strain isolated from an infant"}]}, "wu ui": {"display": "Wu UI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA704313", "pmid": "34835435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating sepsis with culture-Independent mNGS"}]}, "wu w": {"display": "Wu W", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "wu wkk": {"display": "Wu WKK", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}, {"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}]}, "wu x": {"display": "Wu X", "group": false, "n_studies": 5, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}, {"acc": "PRJNA1081790", "pmid": "38838490", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Dongkemadi glacier"}, {"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}, {"acc": "PRJNA734860", "pmid": "34633706", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA734860", "pmid": "35477306", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA801796", "pmid": "37482605", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Upper respiratory tract virus infection alters the host microbial feature"}]}, "wu y": {"display": "Wu Y", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA1029896", "pmid": "39227902", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA1402009", "pmid": "41726387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "faeces of British shorthair Raw sequence reads"}, {"acc": "PRJNA660305", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism, up-regulated colon inf…"}, {"acc": "PRJNA660966", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism and up-regulated colon…"}, {"acc": "PRJNA806510", "pmid": "40487637", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of Gut Microbiota Mediated Metformin Monotherapy Failure in Type 2 Diabetes Mellitus"}, {"acc": "PRJNA895487", "pmid": "36220843", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": "37938270", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "wu yf": {"display": "Wu YF", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1145565", "pmid": "39234544", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "WES of Taiwain Children with Enterovirus (EV) Infections"}]}, "wu yj": {"display": "Wu YJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "wu yw": {"display": "Wu YW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762484", "pmid": "34996879", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiota in patients with Parkinson disease"}]}, "wu z": {"display": "Wu Z", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}, {"acc": "PRJNA1425751", "pmid": "41994268", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome"}, {"acc": "PRJNA702770", "pmid": "33676490", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "gut microbiomes of dogs and wolves"}, {"acc": "PRJNA847006", "pmid": "37280255", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA847017", "pmid": "37280255", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads of GF mice"}]}, "wuest f": {"display": "Wuest F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA376580", "pmid": "28232747", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hospital (NICU) surfaces and sinks"}]}, "wuest m": {"display": "Wuest M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA376580", "pmid": "28232747", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomes from hospital (NICU) surfaces and sinks"}]}, "wurch l": {"display": "Wurch L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA812770", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Lake Erie eDNA HAB samples"}]}, "wurzner-ghajarzadeh a": {"display": "Wurzner-Ghajarzadeh A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB43505", "pmid": "34535959", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut barrier and microbiota changes with glycine and branched chain amino acids supplement…"}]}, "wyche tp": {"display": "Wyche TP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA961698", "pmid": "37610205", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Very Early Life Microbiome and Metabolome Correlates with Primary Vaccination Variability…"}]}, "wydmanski w": {"display": "Wydmański W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "wyvill km": {"display": "Wyvill KM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "xavier bb": {"display": "Xavier BB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA685914", "pmid": "33854066", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiota-based markers predictive of development of Clostridioides difficile infection"}]}, "xavier jb": {"display": "Xavier JB", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA259179", "pmid": "25337874", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Studies of intestinal microbiome and infection resistance"}, {"acc": "PRJNA545312", "pmid": "31780560", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "The role of Enterococcus in allo-HCT patient outcome"}]}, "xavier r": {"display": "Xavier R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}]}, "xavier rj": {"display": "Xavier RJ", "group": false, "n_studies": 15, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": "last", "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": "last", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}, {"acc": "PRJEB7772", "pmid": "25619688", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}, {"acc": "PRJNA231909", "pmid": "36195095", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA398089", "pmid": "35614211", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA400072", "pmid": "41299229", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome structure and metabolic activity in inflammatory bowel disease"}, {"acc": "PRJNA497734", "pmid": "30559407", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA559861", "pmid": "32544460", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Cholesterol Metabolism by Uncultured Human Gut Bacteria Influences Host Cholesterol Level."}, {"acc": "PRJNA615162", "pmid": "41299229", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "IgG4RD and systemic sclerosis"}, {"acc": "PRJNA657818", "pmid": "33377127", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA675598", "pmid": "34325466", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Identification of unique bile acid metabolizing bacteria from the microbiome of centenari…"}, {"acc": "PRJNA685168", "pmid": "34297922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics suggest diverse mechanisms for response to biologic therapies in IBD"}, {"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}, {"acc": "PRJNA821542", "pmid": "41299229", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut metagenomes from mothers and their infants in the EDIA study"}]}, "xhumari j": {"display": "Xhumari J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1095378", "pmid": "39373498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic resistance"}]}, "xi m": {"display": "Xi M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858926", "pmid": "36687649", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}, {"acc": "PRJNA858926", "pmid": "37771701", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}]}, "xi y": {"display": "Xi Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1005597", "pmid": "37896845", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "feces metagenome Metagenome"}]}, "xia dq": {"display": "Xia DQ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA784757", "pmid": "35902819", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "The Diagnosis Performance of Mycobacterium Tuberculosis Complex by Metagenomic Next-gener…"}]}, "xia h": {"display": "Xia H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15111", "pmid": "26932197", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}]}, "xia hl": {"display": "Xia HL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA784757", "pmid": "35902819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "The Diagnosis Performance of Mycobacterium Tuberculosis Complex by Metagenomic Next-gener…"}]}, "xia hm": {"display": "Xia HM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA312041", "pmid": "27226242", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human fecal raw sequence reads"}]}, "xia j": {"display": "Xia J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA925842", "pmid": "36750571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut bacteria glycan metabolism - Raw sequence reads"}]}, "xia m": {"display": "Xia M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390667", "pmid": "42071227", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal sample"}]}, "xia qd": {"display": "Xia QD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843211", "pmid": "36153619", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "the renal pelvis urobiome in the unilateral kidney stone patients"}]}, "xia y": {"display": "Xia Y", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1231247", "pmid": "42746483", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "metagenome Raw sequence reads"}, {"acc": "PRJNA821338", "pmid": "36259361", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial pathogens and antimicrobial resistance diagnosis workflow using Nanopore adapti…"}, {"acc": "PRJNA869513", "pmid": "36259361", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An ultra-sensitive bacterial pathogen and antimicrobial resistance diagnosis workflow usi…"}]}, "xiang q": {"display": "Xiang Q", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1195114", "pmid": "40594045", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Full length norovirus sequencing"}, {"acc": "PRJNA1195142", "pmid": "40594045", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults"}, {"acc": "PRJNA1195144", "pmid": "40594045", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Sequencing of pediatric respiratory syncytial virus isolates from Houston"}]}, "xiang t": {"display": "Xiang T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}]}, "xiang w": {"display": "Xiang W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1425751", "pmid": "41994268", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome"}]}, "xiang y": {"display": "Xiang Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1238458", "pmid": "42654723", "pos": "first", "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Raw data of 16S rRNA sequencing of preterm infants' feces (NEC study)"}]}, "xiao b": {"display": "Xiao B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA695070", "pmid": "38818221", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Transmission and formation of microbiota in the ealry life"}]}, "xiao f": {"display": "Xiao F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB29433", "pmid": "39510074", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nanopore-based metagenomic sequencing analysis of control subjects and patients with AD.…"}]}, "xiao j": {"display": "Xiao J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB6456", "pmid": "35768643", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1052964", "pmid": "39034349", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA1052964", "pmid": "40860434", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}]}, "xiao k": {"display": "Xiao K", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA356809", "pmid": "35568757", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "the gut metagenome of ginat pandas , bears and carnivores Raw sequence reads"}, {"acc": "PRJNA358755", "pmid": "35568757", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "wild and captive gut Raw sequence reads"}, {"acc": "PRJNA774076", "pmid": "35568757", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Gut metagenome of bamboo rats"}, {"acc": "PRJNA986854", "pmid": "40467587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "stool sample of paired mother-infant for 16S rRNA sequencing analysis"}]}, "xiao l": {"display": "Xiao L", "group": false, "n_studies": 10, "studies": [{"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}, {"acc": "PRJNA352475", "pmid": "34429130", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "34429130", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA473126", "pmid": "34429130", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "34429130", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "34429130", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA555020", "pmid": "34429130", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA63661", "pmid": "34429130", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA695070", "pmid": "34429130", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Transmission and formation of microbiota in the ealry life"}, {"acc": "PRJNA695070", "pmid": "38818221", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Transmission and formation of microbiota in the ealry life"}]}, "xiao q": {"display": "Xiao Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1127293", "pmid": "39065200", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "fecal microbial composition in Parkinson's disease"}]}, "xiao x": {"display": "Xiao X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}]}, "xiao y": {"display": "Xiao Y", "group": false, "n_studies": 4, "studies": [{"acc": "PRJDB28434", "pmid": "37979711", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Macrogenomic data of mice (PRJCA016720)"}, {"acc": "PRJNA715658", "pmid": "40266232", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Genome-resolved metagenomics of the chicken gut microbiome"}, {"acc": "PRJNA735411", "pmid": "40266232", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Microbial Ecology of sea lion gut microbiome at Comau Fjord, Northern Patagonia (42 S). R…"}, {"acc": "PRJNA847006", "pmid": "37049457", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}]}, "xie b": {"display": "Xie B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA895372", "pmid": "38303501", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiome function and neurodevelopment in Black infants: Vitamin B12 biosynthesis emerg…"}, {"acc": "PRJNA986854", "pmid": "40467587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "stool sample of paired mother-infant for 16S rRNA sequencing analysis"}]}, "xie f": {"display": "Xie F", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA633324", "pmid": "33751816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Comparative microbial antibiotic resistome between urban and deep forest environments"}, {"acc": "PRJNA657455", "pmid": "34118976", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}]}, "xie g": {"display": "Xie G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "xie h": {"display": "Xie H", "group": false, "n_studies": 10, "studies": [{"acc": "PRJDB24652", "pmid": "35876474", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Tea (Camellia sinensis) microbiomes (PRJCA007800)"}, {"acc": "PRJNA1010809", "pmid": "37674718", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Role of P. gingivalis in microbial diversity and composition of dental plaque"}, {"acc": "PRJNA1010809", "pmid": "38230927", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Role of P. gingivalis in microbial diversity and composition of dental plaque"}, {"acc": "PRJNA1066815", "pmid": "38963827", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human rhinovirus A, B and C in Washington State"}, {"acc": "PRJNA1160290", "pmid": "39416080", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and characteristics of the oral microbiome across race and ethnicity"}, {"acc": "PRJNA1160290", "pmid": "39769067", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and characteristics of the oral microbiome across race and ethnicity"}, {"acc": "PRJNA1390667", "pmid": "42071227", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal sample"}, {"acc": "PRJNA1482867", "pmid": "42428114", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of dental plaque microbiomes before and after non-sur…"}, {"acc": "PRJNA1482867", "pmid": "42589241", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of dental plaque microbiomes before and after non-sur…"}, {"acc": "PRJNA338014", "pmid": "28287142", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28838146", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29554870", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29898986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30383234", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "33827948", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA504891", "pmid": "37596617", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37596617", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA723895", "pmid": "38963827", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Rhinovirus NGS"}]}, "xie j": {"display": "Xie J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1166969", "pmid": "39470277", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Multi-Omics Analysis of the Microbial Profile Characteristics Associated with Pulmonary A…"}]}, "xie l": {"display": "Xie L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73551", "pmid": "38912204", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "PICU cases"}]}, "xie m": {"display": "Xie M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "xie o": {"display": "Xie O", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32631", "pmid": "42032281", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB47909", "pmid": "42032281", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "FMT datasets of patients with recurrent Clostridioides difficile infection (rCDI), inflam…"}]}, "xie w": {"display": "Xie W", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}, {"acc": "PRJNA427267", "pmid": "29235710", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pearl River metagenomics Raw sequence reads"}, {"acc": "PRJNA784757", "pmid": "35902819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "The Diagnosis Performance of Mycobacterium Tuberculosis Complex by Metagenomic Next-gener…"}, {"acc": "PRJNA818432", "pmid": "35783441", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Raw sequence reads"}]}, "xie xh": {"display": "Xie XH", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB6456", "pmid": "36779183", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA422434", "pmid": "36779183", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA48479", "pmid": "36779183", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "xie y": {"display": "Xie Y", "group": false, "n_studies": 4, "studies": [{"acc": "PRJDB29433", "pmid": "39510074", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nanopore-based metagenomic sequencing analysis of control subjects and patients with AD.…"}, {"acc": "PRJEB23052", "pmid": "41511111", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJNA1390667", "pmid": "42071227", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal sample"}, {"acc": "PRJNA311208", "pmid": "27406942", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Severe gut microbiota dysbiosis is associated with poor growth in patients with short bow…"}]}, "xie ym": {"display": "Xie YM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1428929", "pmid": "42022809", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota and Metabolome Signatures in Preterm Infants with High versus Low Risk for…"}]}, "xie z": {"display": "Xie Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1146994", "pmid": "38556088", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Personal traits, lifestyle decisions, and geography shape our dietary intake and conseque…"}]}, "ximenez c": {"display": "Ximénez C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA592261", "pmid": "32788688", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "35196791", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}, {"acc": "PRJNA592261", "pmid": "36650178", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant virome during the first year of life"}]}, "ximenez-garcia c": {"display": "Ximénez-García C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1258733", "pmid": "42127418", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Metagenome"}]}, "xing l": {"display": "Xing L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB61771", "pmid": "37719673", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "RICU NTM study"}]}, "xing m": {"display": "Xing M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390667", "pmid": "42071227", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal sample"}]}, "xing p": {"display": "Xing P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA884026", "pmid": "36724220", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic investigation of lake Issyk-Kul, Kyrgyzstan"}]}, "xing zk": {"display": "Xing ZK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB40947", "pmid": "38745649", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Evaluation of the effect of Fangyu acid lowering granules on improving Hyperuricemia (PRJ…"}]}, "xiong h": {"display": "Xiong H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB108038", "pmid": "41834868", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Jaundice and the Infant Gut Microbiome: An Integrated Shotgun Metagenomics and B…"}]}, "xiong s": {"display": "Xiong S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA986854", "pmid": "40467587", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "stool sample of paired mother-infant for 16S rRNA sequencing analysis"}]}, "xiong w": {"display": "Xiong W", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA273761", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA294605", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA376566", "pmid": "29636439", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}]}, "xiong y": {"display": "Xiong Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA400115", "pmid": "35729161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}]}, "xu a": {"display": "Xu A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}, {"acc": "PRJNA728908", "pmid": "35675435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiota of baseline individuals in a 4.6-year non-alcoholic fatty liver disease pr…"}]}, "xu d": {"display": "Xu D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1274127", "pmid": null, "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Fecal metagenome of Chinese Sturgeons (Acipenser sinensis) gut microbiota"}]}, "xu g": {"display": "Xu G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA390646", "pmid": "29242832", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}]}, "xu h": {"display": "Xu H", "group": false, "n_studies": 6, "studies": [{"acc": "PRJNA427478", "pmid": "24865920", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pomacea canaliculata isolate:SZHN2017 Genome sequencing and assembly"}, {"acc": "PRJNA592843", "pmid": "32100127", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Therapeutic effects of the in vitro cultured human gut microbiota as transplants on alter…"}, {"acc": "PRJNA633324", "pmid": "33751816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Comparative microbial antibiotic resistome between urban and deep forest environments"}, {"acc": "PRJNA681411", "pmid": "34230529", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Clinical sample from VZV patients"}, {"acc": "PRJNA694773", "pmid": "33808480", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Inhibitory effects of breast milk-derived Lactobacillus rhamnosus Probio-M9 on colitis-as…"}, {"acc": "PRJNA806510", "pmid": "40487637", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of Gut Microbiota Mediated Metformin Monotherapy Failure in Type 2 Diabetes Mellitus"}]}, "xu hj": {"display": "Xu HJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA776087", "pmid": "36973820", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Mult-omics Data of Citrus Reticulata 'Chachi'"}]}, "xu j": {"display": "Xu J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB24652", "pmid": "35876474", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Tea (Camellia sinensis) microbiomes (PRJCA007800)"}, {"acc": "PRJNA1274127", "pmid": null, "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Fecal metagenome of Chinese Sturgeons (Acipenser sinensis) gut microbiota"}]}, "xu jz": {"display": "Xu JZ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843211", "pmid": "36153619", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "the renal pelvis urobiome in the unilateral kidney stone patients"}]}, "xu k": {"display": "Xu K", "group": false, "n_studies": 21, "studies": [{"acc": "PRJEB6456", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1018083", "pmid": "38705065", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "comammox supports stable production of ammonia nitrate from urine"}, {"acc": "PRJNA1256929", "pmid": "42237168", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Intestinal flora of piglets"}, {"acc": "PRJNA273761", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA384716", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA473126", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA63661", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA644022", "pmid": "33891391", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Microbiomes in algae biofilm and activated sludge under comparative operating conditions"}, {"acc": "PRJNA775062", "pmid": "42326398", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Landscapes of bacterial, viral and metabolic signatures and their interaction in early-we…"}, {"acc": "PRJNA847006", "pmid": "42326398", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}]}, "xu l": {"display": "Xu L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1024085", "pmid": "38423525", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut microbiota facilitate adaptation of invasive moths to new host plants"}, {"acc": "PRJNA866095", "pmid": "36046746", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Genome sequencing and assembly"}]}, "xu p": {"display": "Xu P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB24652", "pmid": "35876474", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Tea (Camellia sinensis) microbiomes (PRJCA007800)"}]}, "xu q": {"display": "Xu Q", "group": false, "n_studies": 5, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}, {"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}, {"acc": "PRJNA818432", "pmid": "35783441", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Raw sequence reads"}]}, "xu r": {"display": "Xu R", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB12669", "pmid": "27583441", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA853174", "pmid": "35891376", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}, {"acc": "PRJNA902684", "pmid": "39135694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome level reveals the regulatory effect of probiotics to mastitis rats"}]}, "xu s": {"display": "Xu S", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB26810", "pmid": "40347294", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}, {"acc": "PRJNA1127293", "pmid": "39065200", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "fecal microbial composition in Parkinson's disease"}, {"acc": "PRJNA681411", "pmid": "34230529", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Clinical sample from VZV patients"}, {"acc": "PRJNA973819", "pmid": "38188910", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Pathogenetic characterization of a Micrococcus luteus strain isolated from an infant"}]}, "xu t": {"display": "Xu T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA605028", "pmid": "38263861", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Genome sequencing and assembly"}]}, "xu w": {"display": "Xu W", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}, {"acc": "PRJNA1087008", "pmid": "39236827", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic and Metatranscriptomic data of Marine Microbes in Coastal Waters of the South…"}, {"acc": "PRJNA681411", "pmid": "34230529", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Clinical sample from VZV patients"}, {"acc": "PRJNA746290", "pmid": "35210415", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Circulating Microbiome in Myeloid Malignancy"}]}, "xu x": {"display": "Xu X", "group": false, "n_studies": 21, "studies": [{"acc": "PRJEB15111", "pmid": "26932197", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}, {"acc": "PRJEB26795", "pmid": "30609941", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJEB6456", "pmid": "38882494", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1181840", "pmid": "39966439", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Deep Nanopore Q20+ sequencing of Zymo D6331"}, {"acc": "PRJNA273761", "pmid": "38882494", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "38882494", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38882494", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "38882494", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38882494", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38882494", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38882494", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "38882494", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38882494", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA384716", "pmid": "38882494", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "38882494", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA473126", "pmid": "38882494", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38882494", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38882494", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA63661", "pmid": "38882494", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA986854", "pmid": "40467587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "stool sample of paired mother-infant for 16S rRNA sequencing analysis"}]}, "xu y": {"display": "Xu Y", "group": false, "n_studies": 12, "studies": [{"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}, {"acc": "PRJNA1029896", "pmid": "39227902", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA1052964", "pmid": "39034349", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA1087008", "pmid": "39236827", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic and Metatranscriptomic data of Marine Microbes in Coastal Waters of the South…"}, {"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}, {"acc": "PRJNA1139690", "pmid": "40340756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "HOME Study fecal samples"}, {"acc": "PRJNA1231247", "pmid": "42746483", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "metagenome Raw sequence reads"}, {"acc": "PRJNA1364313", "pmid": "35794664", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Antibiotic impact on preterm infant microbiome maturation"}, {"acc": "PRJNA589343", "pmid": "32912596", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The gut microbiota changes in Chinese children with autism spectrum disorders"}, {"acc": "PRJNA631602", "pmid": "32578861", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Rumen metagenome of Hu sheep fed urea"}, {"acc": "PRJNA660305", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism, up-regulated colon inf…"}, {"acc": "PRJNA660966", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism and up-regulated colon…"}]}, "xu z": {"display": "Xu Z", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}, {"acc": "PRJNA936938", "pmid": "36992458", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "searching for viruses in Asiatic toad Raw sequence reads"}]}, "xu zz": {"display": "Xu ZZ", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB23524", "pmid": "38868710", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "WGS data from FMT trial for the treatment of recurrent Clostridium difficile infection"}, {"acc": "PRJEB6456", "pmid": "38868710", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA285502", "pmid": "38868710", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiota transplantation (FMT) for ulcerative colitis"}, {"acc": "PRJNA625520", "pmid": "38868710", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Linking strain engraftment in fecal microbiota transplantation with maintenance of remiss…"}]}, "xue h": {"display": "Xue H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB40947", "pmid": "38745649", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Evaluation of the effect of Fangyu acid lowering granules on improving Hyperuricemia (PRJ…"}]}, "xue l": {"display": "Xue L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "xue q": {"display": "Xue Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1402009", "pmid": "41726387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "faeces of British shorthair Raw sequence reads"}]}, "xue w": {"display": "Xue W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "xun y": {"display": "Xun Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843211", "pmid": "36153619", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "the renal pelvis urobiome in the unilateral kidney stone patients"}]}, "xun zr": {"display": "Xun ZR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB40947", "pmid": "38745649", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Evaluation of the effect of Fangyu acid lowering granules on improving Hyperuricemia (PRJ…"}]}, "yachida s": {"display": "Yachida S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "yadav h": {"display": "Yadav H", "group": false, "n_studies": 11, "studies": [{"acc": "PRJEB14964", "pmid": "41751912", "pos": "last", "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Maternal Secretor Status and Microbiota Composition"}, {"acc": "PRJEB27914", "pmid": "41751912", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Six-week endurance exercise alters gut metagenome that is not reflected in systemic metab…"}, {"acc": "PRJEB29078", "pmid": "41751912", "pos": "last", "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA307231", "pmid": "41751912", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA32089", "pmid": "41751912", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}, {"acc": "PRJNA322188", "pmid": "41751912", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA445932", "pmid": "41751912", "pos": "last", "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA541981", "pmid": "41751912", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome in melanoma patients"}, {"acc": "PRJNA565546", "pmid": "41751912", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "fecal sample Raw sequence reads"}, {"acc": "PRJNA763023", "pmid": "41751912", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Dysbiosis of human gut microbiome in young-onset colorectal cancer"}, {"acc": "PRJNA912638", "pmid": "37213047", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MICROBIOME IN AGING GUT AND BRAIN (MiaGB) STUDY"}]}, "yadgar k": {"display": "Yadgar K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA524170", "pmid": "31605691", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistant microbiome underlies antibiotic therapy in pouchitis"}]}, "yagi s": {"display": "Yagi S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA171119", "pmid": "21779173", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}]}, "yagita m": {"display": "Yagita M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "yahagi k": {"display": "Yahagi K", "group": false, "n_studies": 11, "studies": [{"acc": "PRJDB4176", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB17632", "pmid": "37188713", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Subspecies in the global human gut microbiome"}, {"acc": "PRJEB6070", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Potential of fecal microbiota for early stage detection of colorectal cancer"}, {"acc": "PRJEB6456", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB7774", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome development along the colorectal adenoma-carcinoma sequence"}, {"acc": "PRJEB8094", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The initial state of the human gut microbiome determines its reshaping by antibiotics"}, {"acc": "PRJNA217052", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Fiji COMP"}, {"acc": "PRJNA268964", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "37188713", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA290380", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA485056", "pmid": "37188713", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}]}, "yahia is": {"display": "Yahia IS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA785410", "pmid": "35052889", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Antimicrobial Discovery from Paenibacillus ehimensis A Metagenomics-Nanopore sequencing A…"}]}, "yakimov mm": {"display": "Yakimov MM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA158313", "pmid": "23251564", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Iberian lynx fecal Metagenome"}]}, "yamada t": {"display": "Yamada T", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB1220", "pmid": "24997787", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "yamaguchi j": {"display": "Yamaguchi J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1328708", "pmid": "41472057", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "teamNGS genome sequencing and assembly"}]}, "yamaguchi m": {"display": "Yamaguchi M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB10711", "pmid": "34090359", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomics for pathogens detection from patients with fever of unknown origin"}, {"acc": "PRJDB16375", "pmid": "38708423", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Hybrid sequence-based analysis reveals the distribution of bacterial species and genes in…"}]}, "yamamichi n": {"display": "Yamamichi N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "yamamoto k": {"display": "Yamamoto K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJDB10879", "pmid": "36722950", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Seasonal dynamics of prokaryotes and viruses in Osaka bay"}, {"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "yamamoto rt": {"display": "Yamamoto RT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA255985", "pmid": "25279840", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human saliva, creek water, and synthetic metagenomic samples used in selective DNA isolat…"}]}, "yamano h": {"display": "Yamano H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "yamasaki k": {"display": "Yamasaki K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB7462", "pmid": "25080337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The genomic analysis of an unclutured bacterium IOLA detected from a patient with chronic…"}]}, "yamashita r": {"display": "Yamashita R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "40659786", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "yamazaki t": {"display": "Yamazaki T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "yan a": {"display": "Yan A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA669352", "pmid": "33820946", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome assembly for sulfonamide subsistence and the transfer of genetic determinants"}, {"acc": "PRJNA818303", "pmid": "36823020", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Integrated metagenomics, metaviromics, and metatranscriptomics reveal colonic virome-bact…"}]}, "yan b": {"display": "Yan B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}]}, "yan d": {"display": "Yan D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "yan f": {"display": "Yan F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA986525", "pmid": "38441000", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "2'-fucoysllactose treatment of C57BL/6 adult mice fecal metagenomics"}]}, "yan h": {"display": "Yan H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1402009", "pmid": "41726387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "faeces of British shorthair Raw sequence reads"}, {"acc": "PRJNA237795", "pmid": "35583332", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Swine feces Targeted Locus (Loci)"}]}, "yan j": {"display": "Yan J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1025870", "pmid": "38778483", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota transplantation significantly improved respiratory failure of amyotrophi…"}, {"acc": "PRJNA475246", "pmid": "38486699", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "yan k": {"display": "Yan K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB73551", "pmid": "38912204", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "PICU cases"}]}, "yan p": {"display": "Yan P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA474601", "pmid": "29988510", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Loss of intestinal microbes in cholecystectomy patients"}]}, "yan q": {"display": "Yan Q", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB14607", "pmid": "25721383", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "By taking three metagenomic approaches to reveal the microplankton communities from compo…"}, {"acc": "PRJNA433058", "pmid": "37854337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA936783", "pmid": "35486954", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Draft genome sequences of Group B Streptococcus isolates from infected infants or children"}]}, "yan s": {"display": "Yan S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}, {"acc": "PRJNA605028", "pmid": "38263861", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Genome sequencing and assembly"}]}, "yan t": {"display": "Yan T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "yan w": {"display": "Yan W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15111", "pmid": "26932197", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}]}, "yan x": {"display": "Yan X", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}, {"acc": "PRJNA779578", "pmid": "36503572", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Cervus nippon Raw sequence reads"}]}, "yan y": {"display": "Yan Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}, {"acc": "PRJNA858926", "pmid": "37771701", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}]}, "yan z": {"display": "Yan Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1238458", "pmid": "42654723", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Raw data of 16S rRNA sequencing of preterm infants' feces (NEC study)"}]}, "yanamandra av": {"display": "Yanamandra AV", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "yancey ce": {"display": "Yancey CE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA679730", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2018"}, {"acc": "PRJNA702522", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "3G-ESP Lake Erie 2019"}]}, "yanez f": {"display": "Yañez F", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1146994", "pmid": "38556088", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Personal traits, lifestyle decisions, and geography shape our dietary intake and conseque…"}, {"acc": "PRJNA1171764", "pmid": "40524271", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut metagenome of IBD patients and healthy controls"}]}, "yang b": {"display": "Yang B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA401977", "pmid": "41620634", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome from patients with gestational diabetes mellitus"}]}, "yang c": {"display": "Yang C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}, {"acc": "PRJNA801914", "pmid": "38982403", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of spraying Lactobacillus plantarum P-8 on growth characteristics of neonatal pig…"}, {"acc": "PRJNA858926", "pmid": "37771701", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}]}, "yang dk": {"display": "Yang DK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA623215", "pmid": "32349121", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing to evaluate massively multiplexed detection with Cas13"}]}, "yang f": {"display": "Yang F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA580164", "pmid": "32552447", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome Raw sequence reads"}]}, "yang g": {"display": "Yang G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA775062", "pmid": "42326398", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Landscapes of bacterial, viral and metabolic signatures and their interaction in early-we…"}, {"acc": "PRJNA847006", "pmid": "42326398", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}]}, "yang h": {"display": "Yang H", "group": false, "n_studies": 8, "studies": [{"acc": "PRJDB28434", "pmid": "37979711", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Macrogenomic data of mice (PRJCA016720)"}, {"acc": "PRJEB26795", "pmid": "30609941", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA774819", "pmid": "35695455", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Highly specialized carbohydrate metabolism capability in Bifidobacterium strain associate…"}, {"acc": "PRJNA858926", "pmid": "37771701", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}, {"acc": "PRJNA870588", "pmid": "36843227", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic of preterm infants with cholestasis"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "yang hy": {"display": "Yang HY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA778020", "pmid": "35089209", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Clinical metagenomic sequencing for rapid diagnosis of Neonatal meningitis caused by Urea…"}]}, "yang ia": {"display": "Yang IA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA562766", "pmid": "33208745", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}]}, "yang j": {"display": "Yang J", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA46333", "pmid": "23698366", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA580164", "pmid": "32552447", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome Raw sequence reads"}, {"acc": "PRJNA961946", "pmid": "37386612", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Human Genome sequencing and assembly"}]}, "yang k": {"display": "Yang K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1355224", "pmid": "42037384", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human metagenomic samples Metagenome"}, {"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}]}, "yang l": {"display": "Yang L", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB84944", "pmid": "40885737", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of 56 mother-infant dyads from the ALADDIN birth cohort"}, {"acc": "PRJNA396840", "pmid": "28979798", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomic and metatranscriptomic analysis of saliva reveals disease-associated microbio…"}, {"acc": "PRJNA821338", "pmid": "36259361", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial pathogens and antimicrobial resistance diagnosis workflow using Nanopore adapti…"}, {"acc": "PRJNA869513", "pmid": "36259361", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An ultra-sensitive bacterial pathogen and antimicrobial resistance diagnosis workflow usi…"}]}, "yang q": {"display": "Yang Q", "group": false, "n_studies": 5, "studies": [{"acc": "PRJDB38192", "pmid": "37674580", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Utility of clinical metagenomics in diagnosing malignancies in a cohort of patients with…"}, {"acc": "PRJNA821338", "pmid": "36259361", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial pathogens and antimicrobial resistance diagnosis workflow using Nanopore adapti…"}, {"acc": "PRJNA869513", "pmid": "36259361", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An ultra-sensitive bacterial pathogen and antimicrobial resistance diagnosis workflow usi…"}, {"acc": "PRJNA876377", "pmid": "37007478", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soil microbiome of grassland bulk soil Metagenome"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "yang r": {"display": "Yang R", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA475246", "pmid": "38486699", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "yang s": {"display": "Yang S", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB66721", "pmid": "39384533", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metabolic features explaining the prevalence Bathyarchaeia among microbial communities in…"}, {"acc": "PRJNA1005597", "pmid": "37896845", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "feces metagenome Metagenome"}, {"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}, {"acc": "PRJNA507824", "pmid": "30742071", "pos": "last", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Analytical and Clinical Validation of a Microbial Cell-Free DNA Sequencing Test for Infec…"}, {"acc": "PRJNA869587", "pmid": "36973710", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human viral metagenome Metagenome"}, {"acc": "PRJNA871195", "pmid": "36973710", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Intestinal phage analysis of neonates and children under 5 years old"}, {"acc": "PRJNA994670", "pmid": "39242698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial community characterization and molecular resistance monitoring in geriatric int…"}]}, "yang sb": {"display": "Yang SB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1428929", "pmid": "42022809", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota and Metabolome Signatures in Preterm Infants with High versus Low Risk for…"}]}, "yang t": {"display": "Yang T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}]}, "yang wq": {"display": "Yang WQ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB40947", "pmid": "38745649", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Evaluation of the effect of Fangyu acid lowering granules on improving Hyperuricemia (PRJ…"}]}, "yang x": {"display": "Yang X", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB108038", "pmid": "41834868", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Jaundice and the Infant Gut Microbiome: An Integrated Shotgun Metagenomics and B…"}, {"acc": "PRJNA1127293", "pmid": "39065200", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "fecal microbial composition in Parkinson's disease"}, {"acc": "PRJNA290380", "pmid": "38193687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "yang y": {"display": "Yang Y", "group": false, "n_studies": 54, "studies": [{"acc": "PRJEB1220", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB22207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJEB32135", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB58634", "pmid": "40707831", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencin…"}, {"acc": "PRJEB6456", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9576", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA1025870", "pmid": "38778483", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota transplantation significantly improved respiratory failure of amyotrophi…"}, {"acc": "PRJNA1029896", "pmid": "39227902", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA188481", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA221723", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA305507", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA319574", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA322188", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA328899", "pmid": "38172624", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA336061", "pmid": "28801639", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prevotella enterotype related metagenome sequencing"}, {"acc": "PRJNA339914", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA398089", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA398963", "pmid": "30522530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "oral bacterial species growing in a complex biofilm Raw sequence reads"}, {"acc": "PRJNA436562", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA485056", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA489090", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA504891", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA510445", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA542703", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA557731", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA589343", "pmid": "32912596", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The gut microbiota changes in Chinese children with autism spectrum disorders"}, {"acc": "PRJNA633576", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA660305", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism, up-regulated colon inf…"}, {"acc": "PRJNA660966", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism and up-regulated colon…"}, {"acc": "PRJNA669352", "pmid": "33820946", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome assembly for sulfonamide subsistence and the transfer of genetic determinants"}, {"acc": "PRJNA715601", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA725613", "pmid": "34307461", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "colorectal gut microbiota"}, {"acc": "PRJNA843963", "pmid": "33553097", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA853174", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}, {"acc": "PRJNA858926", "pmid": "37771701", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}, {"acc": "PRJNA961946", "pmid": "37386612", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Human Genome sequencing and assembly"}]}, "yang ys": {"display": "Yang YS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA730640", "pmid": "34262484", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}]}, "yang yy": {"display": "Yang YY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843211", "pmid": "36153619", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "the renal pelvis urobiome in the unilateral kidney stone patients"}]}, "yang z": {"display": "Yang Z", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA490509", "pmid": "26823589", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Raw sequence reads of multiple foodborne viruses from outbreaks or sporatic cased in US"}, {"acc": "PRJNA490509", "pmid": "28408676", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Raw sequence reads of multiple foodborne viruses from outbreaks or sporatic cased in US"}, {"acc": "PRJNA504891", "pmid": "37596617", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37596617", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "yao g": {"display": "Yao G", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1070846", "pmid": "38647334", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal metagenomic sequecing"}, {"acc": "PRJNA48479", "pmid": "38882493", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA801914", "pmid": "38982403", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of spraying Lactobacillus plantarum P-8 on growth characteristics of neonatal pig…"}]}, "yao j": {"display": "Yao J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA397219", "pmid": "29704665", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenomes of patients with colorectal cancer"}]}, "yao l": {"display": "Yao L", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB6456", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA475246", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA486782", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA510445", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA630999", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "39428758", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}]}, "yao x": {"display": "Yao X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1218236", "pmid": "40144527", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Analysis of Intragastric Administration of Donkey Milk on Mouse Immunity Using Gut Microb…"}]}, "yap f": {"display": "Yap F", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "yap gc": {"display": "Yap GC", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA272371", "pmid": "29049378", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA642723", "pmid": "33023370", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiome and Metabolome in Atopic Eczema Infants"}]}, "yap m": {"display": "Yap M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA997801", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of raw material and final product samples from dairy facilities"}, {"acc": "PRJNA997821", "pmid": "39095404", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of environmental samples from dairy facilities"}]}, "yarchoan r": {"display": "Yarchoan R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA396064", "pmid": "30541782", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Survey of single and double stranded DNA non-enveloped viruses on the skin of WHIM patien…"}]}, "yariwake vy": {"display": "Yariwake VY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA894691", "pmid": "37082122", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Maternal exposure to air pollution changes gut microbiota in mice"}]}, "yarlagadda k": {"display": "Yarlagadda K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA657304", "pmid": "33542301", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Shotgun Sequencing of Dog Coprolites"}]}, "yassour m": {"display": "Yassour M", "group": false, "n_studies": 12, "studies": [{"acc": "PRJEB13679", "pmid": "24629344", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn s Disease"}, {"acc": "PRJEB13680", "pmid": "24629344", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The Treatment-Naive Microbiome in New-Onset Crohn`s Disease"}, {"acc": "PRJEB32631", "pmid": "38291346", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "38291346", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1312123", "pmid": "41203618", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Development of the preterm infant gut and gastric residuals microbiome"}, {"acc": "PRJNA1445880", "pmid": "42010622", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome samples Gastrointestinal Microbiome and Allergic Proctocolitis coho…"}, {"acc": "PRJNA1468137", "pmid": "42587158", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "38291346", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA475246", "pmid": "38291346", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA497734", "pmid": "38291346", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA657818", "pmid": "33377127", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA994433", "pmid": "38291346", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Variability of Bifidobacterium Species in the Infant Gut is Independent of M…"}]}, "yasunaga t": {"display": "Yasunaga T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA30563", "pmid": "18976571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High throughput sequence to detect the presence of a pathogenic microbe in a clinical hum…"}]}, "yata vk": {"display": "Yata VK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA912638", "pmid": "37213047", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "MICROBIOME IN AGING GUT AND BRAIN (MiaGB) STUDY"}]}, "yatera k": {"display": "Yatera K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB7462", "pmid": "25080337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The genomic analysis of an unclutured bacterium IOLA detected from a patient with chronic…"}]}, "yatsunenko t": {"display": "Yatsunenko T", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA145005", "pmid": "22030749", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic…"}, {"acc": "PRJNA32089", "pmid": "19043404", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}, {"acc": "PRJNA43253", "pmid": "20363958", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human fecal microbiome"}]}, "yazaki j": {"display": "Yazaki J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "ye h": {"display": "Ye H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA719915", "pmid": "34465850", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tumor microbiome contributes to an aggressive phenotype in the basal-like subtype of panc…"}]}, "ye j": {"display": "Ye J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA437202", "pmid": "33117317", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Red Sea coral metagenomes"}]}, "ye l": {"display": "Ye L", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}, {"acc": "PRJNA1402009", "pmid": "41726387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "faeces of British shorthair Raw sequence reads"}, {"acc": "PRJNA323812", "pmid": "27866251", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "wastewater metagenome Genome sequencing"}]}, "ye p": {"display": "Ye P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA497801", "pmid": "31701197", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "bovine fecal metagenome"}]}, "ye s": {"display": "Ye S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}]}, "ye sh": {"display": "Ye SH", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}, {"acc": "PRJNA623215", "pmid": "32349121", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequencing to evaluate massively multiplexed detection with Cas13"}]}, "ye y": {"display": "Ye Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA230567", "pmid": "33077707", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA230567", "pmid": "33139880", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}, {"acc": "PRJNA866095", "pmid": "36046746", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Genome sequencing and assembly"}]}, "ye z": {"display": "Ye Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB29030", "pmid": "38338730", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lettuce Microbiome (PRJCA018891)"}]}, "yeh mt": {"display": "Yeh MT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA644725", "pmid": "32958861", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with P…"}]}, "yeh sy": {"display": "Yeh SY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA492298", "pmid": "31146755", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Surface soil microbial communities from active vent of coal mine fire in Centralia Pennsy…"}]}, "yelin rd": {"display": "Yelin RD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA672955", "pmid": "34155414", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence…"}]}, "yen ty": {"display": "Yen TY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA704313", "pmid": "34835435", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Investigating sepsis with culture-Independent mNGS"}]}, "yeo kt": {"display": "Yeo KT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA947616", "pmid": "37974294", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome and bloodstream infections among premature infants in Singapore"}]}, "yeoman cj": {"display": "Yeoman CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA646650", "pmid": "33658330", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "In vivo competitions between Fibrobacter succinogenes, Ruminococcus flavefaciens and Rumi…"}]}, "yeong ky": {"display": "Yeong KY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA421859", "pmid": "29886344", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sichuan takin Metagenome"}]}, "yepes d": {"display": "Yepes D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB24921", "pmid": "29745896", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Neolithic and medieval virus genomes reveal complex evolution of hepatitis B"}]}, "yepiskoposyan l": {"display": "Yepiskoposyan L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "yerabandi n": {"display": "Yerabandi N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1019702", "pmid": "39265573", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "MILK study metagenomic sequencing of human milk and infant feces"}]}, "yersin s": {"display": "Yersin S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA300541", "pmid": "38049420", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "yeung dkt": {"display": "Yeung DKT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473348", "pmid": "36217535", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effect of bariatric surgery on the faecal metagenome"}]}, "yi p": {"display": "Yi P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA924947", "pmid": "38651859", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}]}, "yimer g": {"display": "Yimer G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "32351922", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "33042218", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "33553097", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "yin j": {"display": "Yin J", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "37596617", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37596617", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "yin jl": {"display": "Yin JL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB40947", "pmid": "38745649", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Evaluation of the effect of Fangyu acid lowering granules on improving Hyperuricemia (PRJ…"}]}, "yin l": {"display": "Yin L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1107349", "pmid": "38980166", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Polysaccharide degradation by microbial communities"}, {"acc": "PRJNA427478", "pmid": "30107526", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pomacea canaliculata isolate:SZHN2017 Genome sequencing and assembly"}]}, "yin n": {"display": "Yin N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA986854", "pmid": "40467587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "stool sample of paired mother-infant for 16S rRNA sequencing analysis"}]}, "yin q": {"display": "Yin Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29052", "pmid": "39794474", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}]}, "yin x": {"display": "Yin X", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1181840", "pmid": "39966439", "pos": null, "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Deep Nanopore Q20+ sequencing of Zymo D6331"}, {"acc": "PRJNA1390667", "pmid": "42071227", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal sample"}, {"acc": "PRJNA669352", "pmid": "33820946", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome assembly for sulfonamide subsistence and the transfer of genetic determinants"}, {"acc": "PRJNA895487", "pmid": "36220843", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": "37938270", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}, {"acc": "PRJNA895487", "pmid": null, "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Multi-omic gut microbiomes of autistic children and their typically developing siblings"}]}, "yin y": {"display": "Yin Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1256929", "pmid": "42237168", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Intestinal flora of piglets"}, {"acc": "PRJNA336061", "pmid": "28801639", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prevotella enterotype related metagenome sequencing"}]}, "yin z": {"display": "Yin Z", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB23052", "pmid": "33510860", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJNA516054", "pmid": "33510860", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Whole metagenomic analysis of the enteric microbiota in children with autism spectrum dis…"}]}, "yinda ck": {"display": "Yinda CK", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA344863", "pmid": "27666390", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral Metagenomics of fecal samples of fruit bats"}, {"acc": "PRJNA693793", "pmid": "35320047", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BaBel Infant Gut Virome Raw Data"}]}, "ying j": {"display": "Ying J", "group": false, "n_studies": 46, "studies": [{"acc": "PRJEB24006", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB27928", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB32631", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "38424077", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB36820", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB6456", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9524", "pmid": "38424077", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Expanded Enteric Virome and Altered Bacterial Microbiome in Acquired Immunodeficiency Syn…"}, {"acc": "PRJNA272371", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA301903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA385126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA387903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Intestinal Virome Changes Precede Autoimmunity in Type I Diabetes Susceptible Children"}, {"acc": "PRJNA390646", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA407341", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA436562", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA446038", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA491626", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut virome of Cameroonians living in close proximity with bats"}, {"acc": "PRJNA521878", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA545408", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Longitudinal study of the human gut virome"}, {"acc": "PRJNA555020", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA562766", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA657818", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "ying z": {"display": "Ying Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA475246", "pmid": "38486699", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}]}, "yip ayg": {"display": "Yip AYG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB60914", "pmid": null, "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Roles of gut microbiota-mediated nutrient competition and metabolite inhibition in the in…"}]}, "yip js": {"display": "Yip JS", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA376566", "pmid": "29925423", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}]}, "yoda t": {"display": "Yoda T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA692334", "pmid": "34641955", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Recovery of high-quality assembled genomes via single-cell genome-guided binning of metag…"}]}, "yoder c": {"display": "Yoder C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA413356", "pmid": "27532494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Mycobacterium tuberculosis Genome sequencing and assembly"}]}, "yoh m": {"display": "Yoh M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA30563", "pmid": "18976571", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "High throughput sequence to detect the presence of a pathogenic microbe in a clinical hum…"}]}, "yolken r": {"display": "Yolken R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1044118", "pmid": "38061464", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Human oral and gut microbiome in first episode psychosis patients"}]}, "yolton k": {"display": "Yolton K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1139690", "pmid": "40340756", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "HOME Study fecal samples"}]}, "yong gjm": {"display": "Yong GJM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB52295", "pmid": "38117587", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Precocious infant gut microbiome reprograms enterocytes and promotes childhood obesity ri…"}]}, "yoo hj": {"display": "Yoo HJ", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45443", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJNA979436", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}]}, "yoon si": {"display": "Yoon SI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87348", "pmid": "40210629", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "VLP metagenome of Korean gut"}]}, "yoon sm": {"display": "Yoon SM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB45443", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}, {"acc": "PRJNA979436", "pmid": "40442154", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Different development status of gut microbiome link to the dysbiosis of gut ecosystem in…"}]}, "yooseph s": {"display": "Yooseph S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA398963", "pmid": "30522530", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "oral bacterial species growing in a complex biofilm Raw sequence reads"}]}, "yoshida k": {"display": "Yoshida K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB6456", "pmid": "35768643", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "yoshida t": {"display": "Yoshida T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB10879", "pmid": "36722950", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Seasonal dynamics of prokaryotes and viruses in Osaka bay"}]}, "yoshida-court k": {"display": "Yoshida-Court K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}]}, "yoshikawa t": {"display": "Yoshikawa T", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29554870", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "yoshimura j": {"display": "Yoshimura J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA362284", "pmid": "31455406", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome PacBio Raw sequence reads"}]}, "yoshimura m": {"display": "Yoshimura M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA504891", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "36778050", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "yoshioka e": {"display": "Yoshioka E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB106892", "pmid": "41974697", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Chain_Ncc_Metagenomes_Release"}]}, "yoshiura ki": {"display": "Yoshiura KI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB15907", "pmid": "37621086", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Alpha-HPV-targeted sequence for cervical swab specimens"}]}, "you w": {"display": "You W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA433058", "pmid": "37854337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}]}, "you z": {"display": "You Z", "group": false, "n_studies": 2, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}, {"acc": "PRJNA1005597", "pmid": "37896845", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "feces metagenome Metagenome"}]}, "you zq": {"display": "You ZQ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA421859", "pmid": "29886344", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sichuan takin Metagenome"}]}, "young a": {"display": "Young A", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA46333", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Gene-Environment Interactions at the Skin Surface"}, {"acc": "PRJNA971252", "pmid": "37946302", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human skin metagenome during the first year of life"}]}, "young gr": {"display": "Young GR", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB39610", "pmid": "39216480", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB49383", "pmid": "36163498", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm Neonatal Stool Metagenomes"}, {"acc": "PRJNA518912", "pmid": "37231089", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Characterization of fecal IgA levels of several commensal Bacteroides ovatus strains"}, {"acc": "PRJNA637878", "pmid": "37231089", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Precise quantification and tracking of gut bacterial strains following fecal transplantat…"}]}, "young m": {"display": "Young M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA499081", "pmid": "33794724", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}]}, "young ra": {"display": "Young RA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA497734", "pmid": "30559407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "young rr": {"display": "Young RR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA698366", "pmid": "34511605", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "young s": {"display": "Young S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA174084", "pmid": "23924002", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sequence-based discovery of a cord colitis syndrome-associated Bradyrhizobium"}]}, "young v": {"display": "Young V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA797011", "pmid": "35707545", "pos": null, "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "T cell receptor repertoire in premature infants"}]}, "youngblut nd": {"display": "Youngblut ND", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB27308", "pmid": "30974084", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbiome metagenome analysis of stool samples from individuals with low and high saliva…"}, {"acc": "PRJEB46788", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB86954", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Integrating Metagenomics for Helminth Detection"}, {"acc": "PRJNA48479", "pmid": "41358671", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "yousuf ei": {"display": "Yousuf EI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA805248", "pmid": "36008821", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Targeted Capture of AMR in Preterm infants after probiotic exposure"}]}, "yousuf hassen j": {"display": "Yousuf Hassen J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "32351922", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}, {"acc": "PRJNA843963", "pmid": "33553097", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "yousuf j": {"display": "Yousuf J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA843963", "pmid": "33042218", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION"}]}, "yozwiak nl": {"display": "Yozwiak NL", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA344504", "pmid": "28538734", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Zika virus Genome sequencing"}, {"acc": "PRJNA436552", "pmid": "30332564", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lassa virus patient sequencing"}, {"acc": "PRJNA679286", "pmid": "34320399", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Global genome analyses reveal a vast and dynamic anellovirus landscape within the human v…"}]}, "yu b": {"display": "Yu B", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA237795", "pmid": "35583332", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Swine feces Targeted Locus (Loci)"}]}, "yu d": {"display": "Yu D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "yu f": {"display": "Yu F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "yu fb": {"display": "Yu FB", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1390888", "pmid": "41806833", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "GEO accession GSE314416 is currently private and is scheduled to be released on May 01, 2…"}, {"acc": "PRJNA717139", "pmid": "34154658", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitaliz…"}]}, "yu g": {"display": "Yu G", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1188190", "pmid": "37113001", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two…"}, {"acc": "PRJNA171119", "pmid": "20976137", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Viral pathogen detection and discovery by clinical metagenomics"}, {"acc": "PRJNA234452", "pmid": "24896819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Cerebrospinal fluid metagenome from which Leptospira santarosai was diagnosed"}]}, "yu h": {"display": "Yu H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA775062", "pmid": "42326398", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Landscapes of bacterial, viral and metabolic signatures and their interaction in early-we…"}, {"acc": "PRJNA847006", "pmid": "42326398", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}]}, "yu j": {"display": "Yu J", "group": false, "n_studies": 11, "studies": [{"acc": "PRJDB24652", "pmid": "35876474", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Tea (Camellia sinensis) microbiomes (PRJCA007800)"}, {"acc": "PRJEB35362", "pmid": "32337106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun sequencing of archaelogical paleofeces and sediments"}, {"acc": "PRJNA237795", "pmid": "35583332", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Swine feces Targeted Locus (Loci)"}, {"acc": "PRJNA353598", "pmid": "28539351", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA504921", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA506811", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "HUMAN GUT RECTAL BACTERIA Metagenome"}, {"acc": "PRJNA715634", "pmid": "34035441", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Novel Strain Level Resolution of Crohns Disease Mucosa-Associated Microbiota via an ex vi…"}, {"acc": "PRJNA781781", "pmid": "38169289", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of Lactobacillus plantarum P-8 on Growth Performance and Gut Microbiota of Weaned…"}, {"acc": "PRJNA902684", "pmid": "39135694", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome level reveals the regulatory effect of probiotics to mastitis rats"}, {"acc": "PRJNA905328", "pmid": "37904586", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut microbes sequencing"}]}, "yu kb": {"display": "Yu KB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1184197", "pmid": "39856104", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Dietary fiber content in clinical ketogenic diets modifies the gut microbiome and seizure…"}]}, "yu l": {"display": "Yu L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": "38908894", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "yu mk": {"display": "Yu MK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA701961", "pmid": "37069665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}, {"acc": "PRJNA701961", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Donor and recipient stool metagenomes from a fecal microbiota transplantation study"}]}, "yu q": {"display": "Yu Q", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1425751", "pmid": "41994268", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome"}, {"acc": "PRJNA497734", "pmid": "39745374", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "yu s": {"display": "Yu S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJDB38192", "pmid": "37674580", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Utility of clinical metagenomics in diagnosing malignancies in a cohort of patients with…"}, {"acc": "PRJNA1025870", "pmid": "38778483", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota transplantation significantly improved respiratory failure of amyotrophi…"}, {"acc": "PRJNA633324", "pmid": "33751816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Comparative microbial antibiotic resistome between urban and deep forest environments"}]}, "yu sj": {"display": "Yu SJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA997754", "pmid": "38231265", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Pioneering gut health improvements in piglets with phytogenic feed additives"}]}, "yu x": {"display": "Yu X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15111", "pmid": "26932197", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}]}, "yu y": {"display": "Yu Y", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB14607", "pmid": "25721383", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "By taking three metagenomic approaches to reveal the microplankton communities from compo…"}, {"acc": "PRJNA1236379", "pmid": "40886152", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Infant BBB"}, {"acc": "PRJNA698366", "pmid": "34511605", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiomes of mother-infant pairs in Botswana"}]}, "yu yw": {"display": "Yu YW", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA504891", "pmid": "32093762", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "yu z": {"display": "Yu Z", "group": false, "n_studies": 6, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}, {"acc": "PRJEB26810", "pmid": "40347294", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}, {"acc": "PRJNA484151", "pmid": "31379808", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Rural and Urban infant''s fecal microbiota study"}, {"acc": "PRJNA63661", "pmid": "25332767", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA63661", "pmid": "26110908", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA821338", "pmid": "36259361", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial pathogens and antimicrobial resistance diagnosis workflow using Nanopore adapti…"}, {"acc": "PRJNA869513", "pmid": "36259361", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An ultra-sensitive bacterial pathogen and antimicrobial resistance diagnosis workflow usi…"}]}, "yu zg": {"display": "Yu ZG", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB6456", "pmid": "36779183", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA422434", "pmid": "36779183", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA48479", "pmid": "36779183", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "yuan a": {"display": "Yuan A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1463324", "pmid": "41342324", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "VE202 phase 1 stool metagenomes"}]}, "yuan c": {"display": "Yuan C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA806510", "pmid": "40487637", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of Gut Microbiota Mediated Metformin Monotherapy Failure in Type 2 Diabetes Mellitus"}]}, "yuan g": {"display": "Yuan G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB38192", "pmid": "37674580", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Utility of clinical metagenomics in diagnosing malignancies in a cohort of patients with…"}]}, "yuan j": {"display": "Yuan J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1464060", "pmid": "42293186", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Efficacy of Bifidobacterium lactis BLa80 in Preventing Early Childhood Eczema and Respira…"}]}, "yuan l": {"display": "Yuan L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "yuan q": {"display": "Yuan Q", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1206145", "pmid": "40898384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun sequencing of the gut microbiome from infants enrolled in a randomized controlled…"}, {"acc": "PRJNA1445880", "pmid": "42010622", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome samples Gastrointestinal Microbiome and Allergic Proctocolitis coho…"}]}, "yuan r": {"display": "Yuan R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}]}, "yuan s": {"display": "Yuan S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "29564400", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "yuan x": {"display": "Yuan X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA877820", "pmid": "36289225", "pos": "first", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "yuan y": {"display": "Yuan Y", "group": false, "n_studies": 19, "studies": [{"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJNA1425751", "pmid": "41994268", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "yuan z": {"display": "Yuan Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA806510", "pmid": "40487637", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of Gut Microbiota Mediated Metformin Monotherapy Failure in Type 2 Diabetes Mellitus"}]}, "yue w": {"display": "Yue W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA474601", "pmid": "29988510", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Loss of intestinal microbes in cholecystectomy patients"}]}, "yue zz": {"display": "Yue ZZ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB57970", "pmid": "36816587", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "CCU infection"}, {"acc": "PRJEB57970", "pmid": "37139490", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "CCU infection"}]}, "yugi k": {"display": "Yugi K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB11444", "pmid": "37648852", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome of prediabetes in Japan"}]}, "yun ye": {"display": "Yun YE", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB87348", "pmid": "40210629", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "VLP metagenome of Korean gut"}]}, "yung ccm": {"display": "Yung CCM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1087008", "pmid": "39236827", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic and Metatranscriptomic data of Marine Microbes in Coastal Waters of the South…"}]}, "yunusbaeva m": {"display": "Yunusbaeva M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1061168", "pmid": "38440790", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Excess fermentation and lactic acidosis as detrimental functions of the gut microbes in t…"}, {"acc": "PRJNA1366497", "pmid": "42553090", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Bifidobacterium- and Escherichia-dominated gut microbiome metabolic shifts in tuberculosi…"}]}, "yunusbayev b": {"display": "Yunusbayev B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1061168", "pmid": "38440790", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Excess fermentation and lactic acidosis as detrimental functions of the gut microbes in t…"}, {"acc": "PRJNA1366497", "pmid": "42553090", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Bifidobacterium- and Escherichia-dominated gut microbiome metabolic shifts in tuberculosi…"}]}, "yunusbayeva a": {"display": "Yunusbayeva A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1366497", "pmid": "42553090", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Bifidobacterium- and Escherichia-dominated gut microbiome metabolic shifts in tuberculosi…"}]}, "zabih s": {"display": "Zabih S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA836336", "pmid": "36179550", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut metagenome of MSM prior to and following HIV seroconversion"}]}, "zablocki o": {"display": "Zablocki O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA552463", "pmid": "32841606", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "IBD virome Raw sequence reads"}]}, "zachariasen t": {"display": "Zachariasen T", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA715601", "pmid": "38135681", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA916259", "pmid": "38135681", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "COPSAC2000 18-adult metagenomic data"}]}, "zacher m": {"display": "Zacher M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "zackular jp": {"display": "Zackular JP", "group": false, "n_studies": 7, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1042647", "pmid": "39440978", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1042647", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1042647", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1088536", "pmid": "39030654", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of dietary zinc on the gut microbiome and resistome of the gestating cow and neon…"}, {"acc": "PRJNA1106565", "pmid": "39440978", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1106565", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1106565", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "39440978", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1145027", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1173239", "pmid": "40763731", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Amino acid competition shapes Acinetobacter baumannii gut carriage"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA748262", "pmid": "36385534", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal metagenomes of C. difficile colonized patients"}]}, "zagorska i": {"display": "Zagorska I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB42185", "pmid": "34192537", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis"}]}, "zahavi l": {"display": "Zahavi L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": null, "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "zahra r": {"display": "Zahra R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1262354", "pmid": "41603547", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "EMBARK - Establishing a Monitoring Baseline for Antimicrobial Resistance in Key environme…"}]}, "zakirova a": {"display": "Zakirova A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1061168", "pmid": "38440790", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Excess fermentation and lactic acidosis as detrimental functions of the gut microbes in t…"}]}, "zakovic s": {"display": "Zaković S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1297429", "pmid": "40946313", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "16S and RNA sequencing Anopheles gambiae"}]}, "zakrzewski s": {"display": "Zakrzewski S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA417381", "pmid": "29746563", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient Mycobacterium leprae genomes"}]}, "zalcman g": {"display": "Zalcman G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}]}, "zama d": {"display": "Zama D", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA525982", "pmid": "30948795", "pos": null, "reason_code": "age_child_over_36m", "src": "B", "status": "excluded", "title_short": "Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transpl…"}, {"acc": "PRJNA914532", "pmid": "36639555", "pos": null, "reason_code": null, "src": "B", "status": "human_review", "title_short": "Levofloxacin prophylaxis and parenteral nutrition have a detrimental effect on intestinal…"}]}, "zamalloa a": {"display": "Zamalloa A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1307628", "pmid": "41461922", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Microbial oral-gut translocation in advanced chronic liver disease is linked to exacerbat…"}]}, "zaman mu": {"display": "Zaman MU", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1123170", "pmid": "39356745", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "A microbiota-directed therapeutic food for severely malnourished children evaluated follo…"}]}, "zambrinis c": {"display": "Zambrinis C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA557226", "pmid": "31578522", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "Mycobiome in Pancreatic Cancer"}]}, "zamir e": {"display": "Zamir E", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41223", "pmid": "34694375", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB41223", "pmid": "35536665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Diversity and metagenome changes of the oropharyngeal microbiome associated with severe C…"}, {"acc": "PRJEB54704", "pmid": "36914893", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Gut microbiome associations with clinical outcomes of CD19-targeted CAR-T cell immunother…"}]}, "zamora j": {"display": "Zamora J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB75958", "pmid": "33602945", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "REpeated Fecal microbiota REStoration in Hiv"}]}, "zaniani nr": {"display": "Zaniani NR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1168703", "pmid": "38485093", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Identification of an epilepsy-linked gut microbiota signature in a pediatric rat model of…"}]}, "zappulo e": {"display": "Zappulo E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA675110", "pmid": "33659220", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nasopharyngeal microbiome signature in COVID-19 positive patients"}]}, "zar hj": {"display": "Zar HJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37312", "pmid": "33072693", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "The utility of shotgun metagenomics to investigate the carriage of, and longitudinal chan…"}]}, "zara i": {"display": "Zara I", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}]}, "zaramela ls": {"display": "Zaramela LS", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB29169", "pmid": "31222023", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Establishing microbial composition measurement standards with reference frames"}, {"acc": "PRJNA551026", "pmid": "32130897", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Monogenic skin disease driven by staphylococcal dysbiosis"}]}, "zarebski ae": {"display": "Zarebski AE", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB32631", "pmid": "42032281", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB47909", "pmid": "42032281", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "FMT datasets of patients with recurrent Clostridioides difficile infection (rCDI), inflam…"}]}, "zarrinpar a": {"display": "Zarrinpar A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA597371", "pmid": "34193290", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal Selective Pressure and Coevolution Project Part 4 human placebo Metagenome"}]}, "zaura e": {"display": "Zaura E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB88622", "pmid": "41785249", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Functional adaptations and metabolic interactions of undescribed Streptococcus and Rothia…"}]}, "zayed aa": {"display": "Zayed AA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA552463", "pmid": "32841606", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "IBD virome Raw sequence reads"}]}, "zdovc i": {"display": "Zdovc I", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA339914", "pmid": "36170451", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA343144", "pmid": "36170451", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome Metagenomic assembly"}, {"acc": "PRJNA400259", "pmid": "36170451", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human Milk Microbiome Metagenome"}, {"acc": "PRJNA524170", "pmid": "36170451", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Resistant microbiome underlies antibiotic therapy in pouchitis"}]}, "zeber-lubecka n": {"display": "Zeber-Lubecka N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA943135", "pmid": "37577378", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "A diarrhoeal-associated gut dysbiosis in cancer and inflammatory bowel disease patients i…"}]}, "zech xu z": {"display": "Zech Xu Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB13051", "pmid": "25807110", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Subsistence strategies in traditional societies distinguish gut microbiomes"}]}, "zechner el": {"display": "Zechner EL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA63661", "pmid": "41250602", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}]}, "zeevi d": {"display": "Zeevi D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": "first", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "zeidan rs": {"display": "Zeidan RS", "group": false, "n_studies": 10, "studies": [{"acc": "PRJEB14964", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "Maternal Secretor Status and Microbiota Composition"}, {"acc": "PRJEB27914", "pmid": "41751912", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Six-week endurance exercise alters gut metagenome that is not reflected in systemic metab…"}, {"acc": "PRJEB29078", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "NOMIC"}, {"acc": "PRJNA307231", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human feces metagenome 16s rDNA sequencing"}, {"acc": "PRJNA32089", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A core gut microbiome in obese and lean twins"}, {"acc": "PRJNA322188", "pmid": "41751912", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA445932", "pmid": "41751912", "pos": null, "reason_code": "assay_amplicon", "src": "L", "status": "excluded", "title_short": "16S rDNA profiling and virome sequencing of stool samples from children after the onset o…"}, {"acc": "PRJNA541981", "pmid": "41751912", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut microbiome in melanoma patients"}, {"acc": "PRJNA565546", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "fecal sample Raw sequence reads"}, {"acc": "PRJNA763023", "pmid": "41751912", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Dysbiosis of human gut microbiome in young-onset colorectal cancer"}]}, "zeimes m": {"display": "Zeimes M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA230567", "pmid": "29075368", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Systems Biology of Lipid Accumulating Organisms"}]}, "zekeridou a": {"display": "Zekeridou A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB39870", "pmid": "33646178", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Oral microbial community profiles in Parkinson’s disease"}]}, "zelasko s": {"display": "Zelasko S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1078287", "pmid": "39425237", "pos": "first", "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Infant Upper Respiratory Microbiome"}]}, "zeller g": {"display": "Zeller G", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB12357", "pmid": "27126044", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB27928", "pmid": "30936547", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB46778", "pmid": "27126044", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}, {"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}, {"acc": "PRJNA289586", "pmid": "30747106", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}]}, "zeller gf": {"display": "Zeller GF", "group": false, "n_studies": 10, "studies": [{"acc": "PRJDB4176", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "metagenomic data from human fecal samples"}, {"acc": "PRJEB1690", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "This is a metagenomic study to investigate the microbial community and metabolic function…"}, {"acc": "PRJEB21528", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Here we performed a metagenome-wide association study (MWAS) on stools from 218 individua…"}, {"acc": "PRJEB22893", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbiome impacts response to PD-1 immunotherapy in melanoma patients"}, {"acc": "PRJEB27005", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut metagenomes of rural populations in Cameroon"}, {"acc": "PRJEB39223", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metageno…"}, {"acc": "PRJEB44737", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}, {"acc": "PRJNA231909", "pmid": "39885121", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "39885121", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA48479", "pmid": "39885121", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "zeller m": {"display": "Zeller M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA344863", "pmid": "27666390", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Viral Metagenomics of fecal samples of fruit bats"}, {"acc": "PRJNA693793", "pmid": "35320047", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BaBel Infant Gut Virome Raw Data"}]}, "zellmer cj": {"display": "Zellmer CJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445389", "pmid": "30586509", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Sphingomonas koreensis Genome sequencing and assembly"}]}, "zemel b": {"display": "Zemel B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1042647", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "39856742", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}]}, "zemel bs": {"display": "Zemel BS", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1042647", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1042647", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1042647", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase"}, {"acc": "PRJNA1106565", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1106565", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy te…"}, {"acc": "PRJNA1145027", "pmid": "39440978", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1145027", "pmid": "40763731", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metal availability shapes early life microbial ecology and community succession"}, {"acc": "PRJNA1173239", "pmid": "40763731", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Amino acid competition shapes Acinetobacter baumannii gut carriage"}, {"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA557731", "pmid": "38326609", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}]}, "zemke ac": {"display": "Zemke AC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081394", "pmid": "38564694", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Sinus, throat, and sputum airway microbiology in cystic fibrosis"}]}, "zemlin m": {"display": "Zemlin M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA473126", "pmid": "39102225", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}]}, "zemmel zm": {"display": "Zemmel ZM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1236379", "pmid": "40886152", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Infant BBB"}]}, "zemskaya ti": {"display": "Zemskaya TI", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA875570", "pmid": "38217803", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic analysis of microbial communities in gradient zones of the sedimentary strata…"}]}, "zeng c": {"display": "Zeng C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "zeng h": {"display": "Zeng H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA801796", "pmid": "37482605", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Upper respiratory tract virus infection alters the host microbial feature"}]}, "zeng l": {"display": "Zeng L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA477424", "pmid": "30619206", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "panda gut metagenome raw sequence reads Raw sequence reads"}]}, "zeng q": {"display": "Zeng Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}]}, "zeng s": {"display": "Zeng S", "group": false, "n_studies": 48, "studies": [{"acc": "PRJEB23052", "pmid": "33510860", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJEB23052", "pmid": "41511111", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJEB24006", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB27928", "pmid": "36050292", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB27928", "pmid": "38424077", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB32631", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "36050292", "pos": "first", "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB32731", "pmid": "38424077", "pos": "first", "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB36820", "pmid": "36050292", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB36820", "pmid": "38424077", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB39610", "pmid": "41025564", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB6456", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9524", "pmid": "38424077", "pos": "first", "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Expanded Enteric Virome and Altered Bacterial Microbiome in Acquired Immunodeficiency Syn…"}, {"acc": "PRJNA272371", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA301903", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA301903", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA385126", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA387903", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Intestinal Virome Changes Precede Autoimmunity in Type I Diabetes Susceptible Children"}, {"acc": "PRJNA390646", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA390646", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA396794", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA407341", "pmid": "38424077", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA436562", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA446038", "pmid": "38424077", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "33960282", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA491626", "pmid": "38424077", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut virome of Cameroonians living in close proximity with bats"}, {"acc": "PRJNA516054", "pmid": "33510860", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Whole metagenomic analysis of the enteric microbiota in children with autism spectrum dis…"}, {"acc": "PRJNA521878", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA521878", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA545408", "pmid": "38424077", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Longitudinal study of the human gut virome"}, {"acc": "PRJNA555020", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA562766", "pmid": "36050292", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA562766", "pmid": "38424077", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA657818", "pmid": "36050292", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA657818", "pmid": "38424077", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "zeng w": {"display": "Zeng W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1390667", "pmid": "42071227", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal sample"}]}, "zeng wb": {"display": "Zeng WB", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA893635", "pmid": "36361763", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}, {"acc": "PRJNA893635", "pmid": "37297350", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome"}]}, "zeng y": {"display": "Zeng Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1218236", "pmid": "40144527", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Analysis of Intragastric Administration of Donkey Milk on Mouse Immunity Using Gut Microb…"}]}, "zeng zg": {"display": "Zeng ZG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA730640", "pmid": "34262484", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}]}, "zengler k": {"display": "Zengler K", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB29169", "pmid": "31222023", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Establishing microbial composition measurement standards with reference frames"}, {"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA551026", "pmid": "32130897", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Monogenic skin disease driven by staphylococcal dysbiosis"}]}, "zennaro m": {"display": "Zennaro M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB81450", "pmid": "40562730", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Streptococcus gordonii endocarditis"}]}, "zernecke a": {"display": "Zernecke A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1293883", "pmid": "42754908", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss F…"}]}, "zerr dm": {"display": "Zerr DM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA338014", "pmid": "27795347", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "28379561", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29554870", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "29564400", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA338014", "pmid": "30576430", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}]}, "zha x": {"display": "Zha X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB29433", "pmid": "39510074", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nanopore-based metagenomic sequencing analysis of control subjects and patients with AD.…"}]}, "zha y": {"display": "Zha Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37731", "pmid": "33208514", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Effects of the menstrual cycle and hormonal contraceptives on the human microbiome"}]}, "zhai j": {"display": "Zhai J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "zhai q": {"display": "Zhai Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB37883", "pmid": "38908894", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}]}, "zhai x": {"display": "Zhai X", "group": false, "n_studies": 3, "studies": [{"acc": "PRJDB39536", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Large-scale single-cell long-read genomics enables high-resolution microbiome profiling (…"}, {"acc": "PRJNA1094595", "pmid": "39449043", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "SSLR"}, {"acc": "PRJNA926386", "pmid": "37635262", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Phagestorage"}]}, "zhai y": {"display": "Zhai Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA497734", "pmid": "39745374", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "zhan x": {"display": "Zhan X", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA311208", "pmid": "27406942", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Severe gut microbiota dysbiosis is associated with poor growth in patients with short bow…"}, {"acc": "PRJNA856701", "pmid": "36165604", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin microbiome of forehead in children with and without acne"}]}, "zhan y": {"display": "Zhan Y", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "zhang a": {"display": "Zhang A", "group": false, "n_studies": 19, "studies": [{"acc": "PRJEB6456", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA273761", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA384716", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA473126", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA592843", "pmid": "32100127", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Therapeutic effects of the in vitro cultured human gut microbiota as transplants on alter…"}, {"acc": "PRJNA63661", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA876771", "pmid": "36975801", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Vaginal microbiome metagenome inference accuracy: differential measurement error accordin…"}, {"acc": "PRJNA938144", "pmid": "37754563", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "HOLA gut microbiome"}]}, "zhang b": {"display": "Zhang B", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1081790", "pmid": "38838490", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Dongkemadi glacier"}, {"acc": "PRJNA695070", "pmid": "38818221", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Transmission and formation of microbiota in the ealry life"}, {"acc": "PRJNA737472", "pmid": "35365713", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}, {"acc": "PRJNA737472", "pmid": "39122767", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}, {"acc": "PRJNA754263", "pmid": "35659903", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak…"}]}, "zhang bn": {"display": "Zhang BN", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB28401", "pmid": "37261381", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenome investigation of ocular microbiota of cataract patients with and without type…"}]}, "zhang c": {"display": "Zhang C", "group": false, "n_studies": 7, "studies": [{"acc": "PRJDB29433", "pmid": "39510074", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nanopore-based metagenomic sequencing analysis of control subjects and patients with AD.…"}, {"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}, {"acc": "PRJNA1130617", "pmid": null, "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Australian tree bark metagenomes"}, {"acc": "PRJNA297869", "pmid": "26614063", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Human gastric microbiome metagenome"}, {"acc": "PRJNA633381", "pmid": "33662387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "IgA deficiency microbiota"}, {"acc": "PRJNA675914", "pmid": "34302348", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "hydrothermally inactive sulfides metagenomes"}, {"acc": "PRJNA825364", "pmid": "36045431", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Droplet microfluidic cultivation for bee gut bacteria"}]}, "zhang cl": {"display": "Zhang CL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA427267", "pmid": "29235710", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pearl River metagenomics Raw sequence reads"}]}, "zhang d": {"display": "Zhang D", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJEB58222", "pmid": "36813961", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "zhang f": {"display": "Zhang F", "group": false, "n_studies": 13, "studies": [{"acc": "PRJEB108038", "pmid": "41834868", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Jaundice and the Infant Gut Microbiome: An Integrated Shotgun Metagenomics and B…"}, {"acc": "PRJNA1151597", "pmid": "40405038", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Probiotics mixture suppresses MASLD-associated hepatocellular carcinoma"}, {"acc": "PRJNA1229795", "pmid": "40691217", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Theabrownin, in combination with Zearalenone, suppressed colitis-associated colorectal ca…"}, {"acc": "PRJNA1366117", "pmid": "39489290", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The Role of Amino Acid-Derived Metabolites in Non-alcoholic fatty liver disease (NAFLD) D…"}, {"acc": "PRJNA1366117", "pmid": "40015656", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "The Role of Amino Acid-Derived Metabolites in Non-alcoholic fatty liver disease (NAFLD) D…"}, {"acc": "PRJNA1367284", "pmid": "38575146", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Probiotics mixture suppresses diet-induced MASLD: Fecal metagenomics of mice sample"}, {"acc": "PRJNA1425751", "pmid": "41994268", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA504921", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA506811", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "HUMAN GUT RECTAL BACTERIA Metagenome"}, {"acc": "PRJNA715634", "pmid": "34035441", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Novel Strain Level Resolution of Crohns Disease Mucosa-Associated Microbiota via an ex vi…"}, {"acc": "PRJNA715658", "pmid": "40266232", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Genome-resolved metagenomics of the chicken gut microbiome"}, {"acc": "PRJNA735411", "pmid": "40266232", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Microbial Ecology of sea lion gut microbiome at Comau Fjord, Northern Patagonia (42 S). R…"}, {"acc": "PRJNA876804", "pmid": "36357381", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Human Metagenomic Metagenome"}]}, "zhang g": {"display": "Zhang G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA427478", "pmid": "30107526", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pomacea canaliculata isolate:SZHN2017 Genome sequencing and assembly"}]}, "zhang h": {"display": "Zhang H", "group": false, "n_studies": 13, "studies": [{"acc": "PRJDB38192", "pmid": "37674580", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Utility of clinical metagenomics in diagnosing malignancies in a cohort of patients with…"}, {"acc": "PRJDB40947", "pmid": "38745649", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Evaluation of the effect of Fangyu acid lowering granules on improving Hyperuricemia (PRJ…"}, {"acc": "PRJEB37883", "pmid": "38908894", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Hospital regimes including probiotics guide the individual development of the gut microbi…"}, {"acc": "PRJNA1070846", "pmid": "38647334", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal metagenomic sequecing"}, {"acc": "PRJNA240141", "pmid": "36284144", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Elephant feces Metagenome"}, {"acc": "PRJNA504891", "pmid": "37596617", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37596617", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA694773", "pmid": "33808480", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Inhibitory effects of breast milk-derived Lactobacillus rhamnosus Probio-M9 on colitis-as…"}, {"acc": "PRJNA741607", "pmid": "38540144", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Inhibitory Effects of Lactulose on Colitis-Associated Carcinogenesis by Restoration of th…"}, {"acc": "PRJNA801914", "pmid": "38982403", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of spraying Lactobacillus plantarum P-8 on growth characteristics of neonatal pig…"}, {"acc": "PRJNA810575", "pmid": "36419187", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes of maternal and infant faecal samples"}, {"acc": "PRJNA835973", "pmid": "38540144", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Lactobacillus rhamnosus Probio-M9 alleviates colitis-associated tumorigenesis via modifie…"}, {"acc": "PRJNA902684", "pmid": "39135694", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Metagenome level reveals the regulatory effect of probiotics to mastitis rats"}]}, "zhang j": {"display": "Zhang J", "group": false, "n_studies": 12, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}, {"acc": "PRJDB39536", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Large-scale single-cell long-read genomics enables high-resolution microbiome profiling (…"}, {"acc": "PRJNA1106097", "pmid": "41411653", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Leuconostoc citreum enhances the colonization ability of Lactiplantibacillus plantarum in…"}, {"acc": "PRJNA1425751", "pmid": "41994268", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome"}, {"acc": "PRJNA592843", "pmid": "32100127", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Therapeutic effects of the in vitro cultured human gut microbiota as transplants on alter…"}, {"acc": "PRJNA597371", "pmid": "34193290", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal Selective Pressure and Coevolution Project Part 4 human placebo Metagenome"}, {"acc": "PRJNA602729", "pmid": "34079079", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}, {"acc": "PRJNA602729", "pmid": "37905808", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}, {"acc": "PRJNA702617", "pmid": "37863066", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Shotgun Metagenome Sequencing of Rectal Swab Samples from Cervical Cancer Patients"}, {"acc": "PRJNA715634", "pmid": "34035441", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Novel Strain Level Resolution of Crohns Disease Mucosa-Associated Microbiota via an ex vi…"}, {"acc": "PRJNA734860", "pmid": "34633706", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA734860", "pmid": "35477306", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Stool microbiome of Hispanics in the Cameron County Hispanic Cohort"}, {"acc": "PRJNA801796", "pmid": "37482605", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Upper respiratory tract virus infection alters the host microbial feature"}, {"acc": "PRJNA866654", "pmid": "36358819", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Exploring gut microbiome in predicting efficacy of immuno-therapy in non-small cell lung…"}]}, "zhang jq": {"display": "Zhang JQ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA784757", "pmid": "35902819", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "The Diagnosis Performance of Mycobacterium Tuberculosis Complex by Metagenomic Next-gener…"}]}, "zhang jr": {"display": "Zhang JR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB40947", "pmid": "38745649", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Evaluation of the effect of Fangyu acid lowering granules on improving Hyperuricemia (PRJ…"}]}, "zhang k": {"display": "Zhang K", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1029896", "pmid": "39227902", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA1425751", "pmid": "41994268", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome"}, {"acc": "PRJNA660305", "pmid": "35663372", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism, up-regulated colon inf…"}, {"acc": "PRJNA660966", "pmid": "35663372", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism and up-regulated colon…"}]}, "zhang l": {"display": "Zhang L", "group": false, "n_studies": 31, "studies": [{"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJNA1031773", "pmid": "41411654", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}, {"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}, {"acc": "PRJNA1170175", "pmid": "40248366", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Vaginal Virome of Healthy Women and Patients with Vaginitis"}, {"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}, {"acc": "PRJNA1402009", "pmid": "41726387", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "faeces of British shorthair Raw sequence reads"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "38193687", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA400115", "pmid": "35729161", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA589343", "pmid": "32912596", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The gut microbiota changes in Chinese children with autism spectrum disorders"}, {"acc": "PRJNA60717", "pmid": "34294039", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analysis of infant stool sample"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA858101", "pmid": "36383683", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "B", "status": "excluded", "title_short": "Fecal microbiome from mouse models and patients"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}, {"acc": "PRJNA936783", "pmid": "35486954", "pos": null, "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Draft genome sequences of Group B Streptococcus isolates from infected infants or children"}]}, "zhang m": {"display": "Zhang M", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB59277", "pmid": "37009508", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "PICU mngs PCP"}, {"acc": "PRJEB73551", "pmid": "38912204", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "PICU cases"}, {"acc": "PRJNA1402009", "pmid": "41726387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "faeces of British shorthair Raw sequence reads"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA715658", "pmid": "40266232", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Genome-resolved metagenomics of the chicken gut microbiome"}, {"acc": "PRJNA735411", "pmid": "40266232", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Microbial Ecology of sea lion gut microbiome at Comau Fjord, Northern Patagonia (42 S). R…"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "zhang n": {"display": "Zhang N", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}, {"acc": "PRJNA741606", "pmid": "38254181", "pos": "last", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Rumen content metagenome of goat kids"}]}, "zhang p": {"display": "Zhang P", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB23052", "pmid": "41511111", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "zhang q": {"display": "Zhang Q", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1151839", "pmid": "39663251", "pos": "first", "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Salivary microbiome in burning mouth syndrome"}, {"acc": "PRJNA259274", "pmid": "25568281", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Wake Forest Vervet Microbiome Project"}, {"acc": "PRJNA48479", "pmid": "38882493", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA877820", "pmid": "36539432", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}, {"acc": "PRJNA994670", "pmid": "39242698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial community characterization and molecular resistance monitoring in geriatric int…"}]}, "zhang qz": {"display": "Zhang QZ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB40947", "pmid": "38745649", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Evaluation of the effect of Fangyu acid lowering granules on improving Hyperuricemia (PRJ…"}]}, "zhang r": {"display": "Zhang R", "group": false, "n_studies": 3, "studies": [{"acc": "PRJDB39536", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Large-scale single-cell long-read genomics enables high-resolution microbiome profiling (…"}, {"acc": "PRJEB26810", "pmid": "40347294", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Human milk bacterial and viral microbiota composition according to the delivery mode and…"}, {"acc": "PRJNA474601", "pmid": "29988510", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Loss of intestinal microbes in cholecystectomy patients"}]}, "zhang s": {"display": "Zhang S", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1024085", "pmid": "38423525", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut microbiota facilitate adaptation of invasive moths to new host plants"}, {"acc": "PRJNA1052964", "pmid": "39034349", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA702770", "pmid": "33676490", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "gut microbiomes of dogs and wolves"}, {"acc": "PRJNA961946", "pmid": "37386612", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Human Genome sequencing and assembly"}]}, "zhang t": {"display": "Zhang T", "group": false, "n_studies": 26, "studies": [{"acc": "PRJDB39536", "pmid": null, "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Large-scale single-cell long-read genomics enables high-resolution microbiome profiling (…"}, {"acc": "PRJEB6456", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1018083", "pmid": "38705065", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "comammox supports stable production of ammonia nitrate from urine"}, {"acc": "PRJNA1029896", "pmid": "39227902", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA1070846", "pmid": "38647334", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal metagenomic sequecing"}, {"acc": "PRJNA1181840", "pmid": "39966439", "pos": "last", "reason_code": "host_synthetic", "src": "B", "status": "excluded", "title_short": "Deep Nanopore Q20+ sequencing of Zymo D6331"}, {"acc": "PRJNA16209", "pmid": "16336043", "pos": "first", "reason_code": "assay_rna", "src": "B", "status": "excluded", "title_short": "Metagenome sequencing of RNA viruses in human feces"}, {"acc": "PRJNA273761", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA384716", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA473126", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA48479", "pmid": "38882493", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA489090", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA63661", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA660305", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism, up-regulated colon inf…"}, {"acc": "PRJNA660966", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism and up-regulated colon…"}, {"acc": "PRJNA669352", "pmid": "33820946", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome assembly for sulfonamide subsistence and the transfer of genetic determinants"}, {"acc": "PRJNA669352", "pmid": "38366247", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbiome assembly for sulfonamide subsistence and the transfer of genetic determinants"}]}, "zhang w": {"display": "Zhang W", "group": false, "n_studies": 28, "studies": [{"acc": "PRJDB38192", "pmid": "37674580", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Utility of clinical metagenomics in diagnosing malignancies in a cohort of patients with…"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJEB6456", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1005597", "pmid": "37896845", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "feces metagenome Metagenome"}, {"acc": "PRJNA1070846", "pmid": "38647334", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal metagenomic sequecing"}, {"acc": "PRJNA1081790", "pmid": "38838490", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Dongkemadi glacier"}, {"acc": "PRJNA1170175", "pmid": "40248366", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Vaginal Virome of Healthy Women and Patients with Vaginitis"}, {"acc": "PRJNA255683", "pmid": "25078300", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "CAT fecal Metagenome"}, {"acc": "PRJNA273761", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA384716", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA473126", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA63661", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA806510", "pmid": "40487637", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of Gut Microbiota Mediated Metformin Monotherapy Failure in Type 2 Diabetes Mellitus"}, {"acc": "PRJNA869587", "pmid": "36973710", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human viral metagenome Metagenome"}, {"acc": "PRJNA871195", "pmid": "36973710", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Intestinal phage analysis of neonates and children under 5 years old"}, {"acc": "PRJNA994670", "pmid": "39242698", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial community characterization and molecular resistance monitoring in geriatric int…"}]}, "zhang x": {"display": "Zhang X", "group": false, "n_studies": 11, "studies": [{"acc": "PRJEB23052", "pmid": "41511111", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJEB27799", "pmid": "30478291", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prediction of the intestinal resistome by a novel 3D-based method"}, {"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}, {"acc": "PRJNA1166969", "pmid": "39470277", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Multi-Omics Analysis of the Microbial Profile Characteristics Associated with Pulmonary A…"}, {"acc": "PRJNA1420872", "pmid": "41027803", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of gut/stool samples Metagenome"}, {"acc": "PRJNA48479", "pmid": "38882493", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA589343", "pmid": "32912596", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The gut microbiota changes in Chinese children with autism spectrum disorders"}, {"acc": "PRJNA702770", "pmid": "33676490", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "gut microbiomes of dogs and wolves"}, {"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}, {"acc": "PRJNA821237", "pmid": "36071157", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut microbiome during COVID-19 disease"}]}, "zhang xh": {"display": "Zhang XH", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522699", "pmid": "31427729", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}]}, "zhang xx": {"display": "Zhang XX", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1092353", "pmid": "39353343", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Benzothiazole-degrading consortia Raw sequence reads and Metagenome"}, {"acc": "PRJNA323812", "pmid": "27866251", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "wastewater metagenome Genome sequencing"}]}, "zhang y": {"display": "Zhang Y", "group": false, "n_studies": 22, "studies": [{"acc": "PRJDB29433", "pmid": "39510074", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Nanopore-based metagenomic sequencing analysis of control subjects and patients with AD.…"}, {"acc": "PRJDB38192", "pmid": "37674580", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Utility of clinical metagenomics in diagnosing malignancies in a cohort of patients with…"}, {"acc": "PRJEB108038", "pmid": "41834868", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal Jaundice and the Infant Gut Microbiome: An Integrated Shotgun Metagenomics and B…"}, {"acc": "PRJEB46943", "pmid": "37037943", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": "40396485", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB73551", "pmid": "38912204", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "PICU cases"}, {"acc": "PRJNA1024085", "pmid": "38423525", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut microbiota facilitate adaptation of invasive moths to new host plants"}, {"acc": "PRJNA1025870", "pmid": "38778483", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Fecal microbiota transplantation significantly improved respiratory failure of amyotrophi…"}, {"acc": "PRJNA1127293", "pmid": "39065200", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "fecal microbial composition in Parkinson's disease"}, {"acc": "PRJNA1274127", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Fecal metagenome of Chinese Sturgeons (Acipenser sinensis) gut microbiota"}, {"acc": "PRJNA383868", "pmid": "32409670", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Metagenomics of the Microbiome in Oral Health and Disease"}, {"acc": "PRJNA398089", "pmid": "35614211", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA427478", "pmid": "30107526", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pomacea canaliculata isolate:SZHN2017 Genome sequencing and assembly"}, {"acc": "PRJNA433058", "pmid": "37854337", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA504921", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA506811", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "HUMAN GUT RECTAL BACTERIA Metagenome"}, {"acc": "PRJNA602729", "pmid": "37905808", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}, {"acc": "PRJNA629392", "pmid": "33398182", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Metabolic recovery with eculizumab precision therapy of CHAPLE disease"}, {"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}, {"acc": "PRJNA719915", "pmid": "34465850", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tumor microbiome contributes to an aggressive phenotype in the basal-like subtype of panc…"}, {"acc": "PRJNA806510", "pmid": "40487637", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of Gut Microbiota Mediated Metformin Monotherapy Failure in Type 2 Diabetes Mellitus"}, {"acc": "PRJNA812695", "pmid": "37714338", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Metagenome"}]}, "zhang yz": {"display": "Zhang YZ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA522699", "pmid": "31427729", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}]}, "zhang z": {"display": "Zhang Z", "group": false, "n_studies": 15, "studies": [{"acc": "PRJEB15111", "pmid": "26932197", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA1002114", "pmid": "37823665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Direct prediction of carbapenem-resistance for Pseudomonas aeruginosa by whole genome seq…"}, {"acc": "PRJNA1106097", "pmid": "41411653", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Leuconostoc citreum enhances the colonization ability of Lactiplantibacillus plantarum in…"}, {"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}, {"acc": "PRJNA290380", "pmid": "38193687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA356809", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "the gut metagenome of ginat pandas , bears and carnivores Raw sequence reads"}, {"acc": "PRJNA358755", "pmid": "35568757", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "wild and captive gut Raw sequence reads"}, {"acc": "PRJNA400115", "pmid": "35729161", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "TEDDY Microbiome"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA60717", "pmid": "34294039", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analysis of infant stool sample"}, {"acc": "PRJNA690735", "pmid": "36183751", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary Fibers Promote Inflammation in Inflammatory Bowel Diseases"}, {"acc": "PRJNA774076", "pmid": "35568757", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Gut metagenome of bamboo rats"}, {"acc": "PRJNA847006", "pmid": "37280255", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA847017", "pmid": "37280255", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads of GF mice"}]}, "zhang zj": {"display": "Zhang ZJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB102033", "pmid": "41330369", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Lantibiotic-producing bacteria impact microbiome resilience and colonization resistance"}]}, "zhao a": {"display": "Zhao A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA858926", "pmid": "36687649", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}, {"acc": "PRJNA858926", "pmid": "37771701", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbiological analysis of breast milk and infant feces"}]}, "zhao c": {"display": "Zhao C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1162089", "pmid": "40730159", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin shotgun metagenomics and 16s amplicon sequencing from healthy adults, healthy childr…"}, {"acc": "PRJNA557731", "pmid": "32284564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA737472", "pmid": null, "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "zhao d": {"display": "Zhao D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1367284", "pmid": "38575146", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Probiotics mixture suppresses diet-induced MASLD: Fecal metagenomics of mice sample"}]}, "zhao f": {"display": "Zhao F", "group": false, "n_studies": 27, "studies": [{"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJNA1065277", "pmid": "39268487", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal factors are more capable of influencing the structure of infant gut microbes and…"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA352475", "pmid": "34429130", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "34429130", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "34429130", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "34429130", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "34429130", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA555020", "pmid": "34429130", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA63661", "pmid": "34429130", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA695070", "pmid": "34429130", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Transmission and formation of microbiota in the ealry life"}, {"acc": "PRJNA695070", "pmid": "38818221", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Transmission and formation of microbiota in the ealry life"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA741607", "pmid": "38540144", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Inhibitory Effects of Lactulose on Colitis-Associated Carcinogenesis by Restoration of th…"}, {"acc": "PRJNA781781", "pmid": "38169289", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of Lactobacillus plantarum P-8 on Growth Performance and Gut Microbiota of Weaned…"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA810575", "pmid": "36419187", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes of maternal and infant faecal samples"}, {"acc": "PRJNA835973", "pmid": "38540144", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Lactobacillus rhamnosus Probio-M9 alleviates colitis-associated tumorigenesis via modifie…"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "zhao g": {"display": "Zhao G", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB7772", "pmid": "25619688", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An analysis of the composition of viruses and bacteria in stool samples from IBD patients…"}, {"acc": "PRJEB9818", "pmid": "26351661", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "The gut DNA viromes of Malawian twins discordant for severe acute undernutrition"}, {"acc": "PRJNA290380", "pmid": "38193687", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}]}, "zhao h": {"display": "Zhao H", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}, {"acc": "PRJNA633324", "pmid": "33751816", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Comparative microbial antibiotic resistome between urban and deep forest environments"}, {"acc": "PRJNA633381", "pmid": "33662387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "IgA deficiency microbiota"}, {"acc": "PRJNA936938", "pmid": "36992458", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "searching for viruses in Asiatic toad Raw sequence reads"}]}, "zhao j": {"display": "Zhao J", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}, {"acc": "PRJNA1338803", "pmid": "41421358", "pos": null, "reason_code": "host_synthetic", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of faecal fermentation in vitro"}, {"acc": "PRJNA422434", "pmid": "41421358", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA504891", "pmid": "37596617", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "37596617", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA961946", "pmid": "37386612", "pos": "last", "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Human Genome sequencing and assembly"}]}, "zhao jy": {"display": "Zhao JY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1428929", "pmid": "42022809", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota and Metabolome Signatures in Preterm Infants with High versus Low Risk for…"}]}, "zhao k": {"display": "Zhao K", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1402009", "pmid": "41726387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "faeces of British shorthair Raw sequence reads"}, {"acc": "PRJNA322324", "pmid": "27927929", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Advanced molecular detection of viral diseases."}]}, "zhao l": {"display": "Zhao L", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}, {"acc": "PRJNA1166969", "pmid": "39470277", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Multi-Omics Analysis of the Microbial Profile Characteristics Associated with Pulmonary A…"}, {"acc": "PRJNA1355224", "pmid": "42037384", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human metagenomic samples Metagenome"}, {"acc": "PRJNA290380", "pmid": "38193687", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA905328", "pmid": "37904586", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut microbes sequencing"}]}, "zhao m": {"display": "Zhao M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA994670", "pmid": "39242698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Microbial community characterization and molecular resistance monitoring in geriatric int…"}]}, "zhao n": {"display": "Zhao N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46659", "pmid": "40241748", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Heritable Vaginal Bacteria Relate to Allergic Sensitization"}]}, "zhao q": {"display": "Zhao Q", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1002114", "pmid": "37823665", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Direct prediction of carbapenem-resistance for Pseudomonas aeruginosa by whole genome seq…"}, {"acc": "PRJNA1005597", "pmid": "37896845", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "feces metagenome Metagenome"}]}, "zhao r": {"display": "Zhao R", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1005597", "pmid": "37896845", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "feces metagenome Metagenome"}, {"acc": "PRJNA504921", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA506811", "pmid": "30842211", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "HUMAN GUT RECTAL BACTERIA Metagenome"}]}, "zhao s": {"display": "Zhao S", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJNA1273620", "pmid": "41998770", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility"}, {"acc": "PRJNA544527", "pmid": "31477907", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA775062", "pmid": "42326398", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Landscapes of bacterial, viral and metabolic signatures and their interaction in early-we…"}, {"acc": "PRJNA847006", "pmid": "42326398", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}]}, "zhao x": {"display": "Zhao X", "group": false, "n_studies": 4, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}, {"acc": "PRJEB57970", "pmid": "36816587", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "CCU infection"}, {"acc": "PRJEB57970", "pmid": "37139490", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "CCU infection"}, {"acc": "PRJNA1052964", "pmid": "39034349", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA1052964", "pmid": "40860434", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA497801", "pmid": "31701197", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "bovine fecal metagenome"}]}, "zhao x-m": {"display": "Zhao X-M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA524703", "pmid": "40600714", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA835720", "pmid": "40600714", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human feces Viral/Bacterial Metagenome"}]}, "zhao xm": {"display": "Zhao XM", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA300541", "pmid": "35484115", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA504891", "pmid": "35484115", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "36376928", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}]}, "zhao xy": {"display": "Zhao XY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB57970", "pmid": "36816587", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "CCU infection"}, {"acc": "PRJEB57970", "pmid": "37139490", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "CCU infection"}]}, "zhao y": {"display": "Zhao Y", "group": false, "n_studies": 7, "studies": [{"acc": "PRJDB38192", "pmid": "37674580", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Utility of clinical metagenomics in diagnosing malignancies in a cohort of patients with…"}, {"acc": "PRJNA1029896", "pmid": "39227902", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}, {"acc": "PRJNA390646", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA633576", "pmid": "42236946", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}, {"acc": "PRJNA877820", "pmid": "36539432", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "zhao yc": {"display": "Zhao YC", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB57970", "pmid": "37139490", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "CCU infection"}]}, "zhao z": {"display": "Zhao Z", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA1238458", "pmid": "42654723", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Raw data of 16S rRNA sequencing of preterm infants' feces (NEC study)"}, {"acc": "PRJNA475246", "pmid": "38486699", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA801914", "pmid": "38982403", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of spraying Lactobacillus plantarum P-8 on growth characteristics of neonatal pig…"}]}, "zheng h": {"display": "Zheng H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA825364", "pmid": "36045431", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Droplet microfluidic cultivation for bee gut bacteria"}]}, "zheng j": {"display": "Zheng J", "group": false, "n_studies": 11, "studies": [{"acc": "PRJNA1390667", "pmid": "42071227", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal sample"}, {"acc": "PRJNA352475", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA379120", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA473126", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA489090", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA494875", "pmid": "30914068", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Reconstructions of Gut Microbiome in Weanling Pigs"}, {"acc": "PRJNA497734", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA555020", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA63661", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA695070", "pmid": "34429130", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Transmission and formation of microbiota in the ealry life"}, {"acc": "PRJNA695070", "pmid": "38818221", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Transmission and formation of microbiota in the ealry life"}, {"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "zheng l": {"display": "Zheng L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA401977", "pmid": "41620634", "pos": null, "reason_code": "age_maternal_only", "src": "L", "status": "excluded", "title_short": "Metagenomic analysis of fecal microbiome from patients with gestational diabetes mellitus"}]}, "zheng m": {"display": "Zheng M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1018083", "pmid": "38705065", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "comammox supports stable production of ammonia nitrate from urine"}, {"acc": "PRJNA1184213", "pmid": "40765991", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The microbiota-dependent effect of physical activity on Crohn's disease"}]}, "zheng s": {"display": "Zheng S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "zheng w": {"display": "Zheng W", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "zheng x": {"display": "Zheng X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1092353", "pmid": "39353343", "pos": "first", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Benzothiazole-degrading consortia Raw sequence reads and Metagenome"}]}, "zheng y": {"display": "Zheng Y", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA1274127", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Fecal metagenome of Chinese Sturgeons (Acipenser sinensis) gut microbiota"}, {"acc": "PRJNA483343", "pmid": "30305736", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA522699", "pmid": "31427729", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacterial dimethylsulfoniopropionate production in marine sediments"}, {"acc": "PRJNA633324", "pmid": "33751816", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Comparative microbial antibiotic resistome between urban and deep forest environments"}]}, "zheng z": {"display": "Zheng Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1314725", "pmid": "41162698", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Evidence for improved DNA repair in long-lived bowhead whale"}]}, "zhernakova a": {"display": "Zhernakova A", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46943", "pmid": "40615392", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJEB46943", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Deep sequencing of faecal DNA viromes from 647 healthy Danish infants"}, {"acc": "PRJNA1468137", "pmid": "42587158", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal influences on infant gut microbiome and health"}, {"acc": "PRJNA524703", "pmid": "40615392", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}]}, "zhioua f": {"display": "Zhioua F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA762668", "pmid": "35547149", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal and comparative analysis of Tunisian newborns gut microbiota according to de…"}]}, "zhitenev v": {"display": "Zhitenev V", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB9021", "pmid": "26062507", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Investigation of Bronze Age in Eurasia by sequencing from 101 ancient human remains. We s…"}]}, "zhong a": {"display": "Zhong A", "group": false, "n_studies": 40, "studies": [{"acc": "PRJEB1220", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "A method for identifying metagenomic species and variable genetic elements by exhaustive…"}, {"acc": "PRJEB12669", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB22207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome diagnostics in pre-term babies"}, {"acc": "PRJEB32135", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The Canadian Healthy Infant Longitudinal Development (CHILD) study is a multicenter longi…"}, {"acc": "PRJEB6456", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9576", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the…"}, {"acc": "PRJNA188481", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Linking Lifestyle to the Oral and Gut Microbiota in a Large Prospective Cohort"}, {"acc": "PRJNA221723", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome from two premature infants"}, {"acc": "PRJNA273761", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA299502", "pmid": "38172624", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA305507", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Athlete Microbiome Project (AMP)"}, {"acc": "PRJNA319574", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Gut microbial interactions with the inflammatory cytokine production capacity"}, {"acc": "PRJNA322188", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA328899", "pmid": "38172624", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA397112", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Indian Human Gut Microbiome"}, {"acc": "PRJNA398089", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal Multi'omics of the Human Microbiome in Inflammatory Bowel Disease"}, {"acc": "PRJNA436562", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA473126", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA485056", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA489090", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA497734", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}, {"acc": "PRJNA504891", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA510445", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The relationship of fecal microbiomes and nutritional status in cystic fibrosis"}, {"acc": "PRJNA521878", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA542703", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA544527", "pmid": "38172624", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with…"}, {"acc": "PRJNA557731", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bacterial colonization reprograms the neonatal gut metabolome"}, {"acc": "PRJNA633576", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic survey of the gut microbiome of term infants in the United States reveals wid…"}, {"acc": "PRJNA715601", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "COPSAC corhot study of infant gut microbiome"}, {"acc": "PRJNA853174", "pmid": "38172624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant gut microbiome changes and recovers after norovirus infection"}]}, "zhong c": {"display": "Zhong C", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA866654", "pmid": "36358819", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Exploring gut microbiome in predicting efficacy of immuno-therapy in non-small cell lung…"}]}, "zhong h": {"display": "Zhong H", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB26795", "pmid": "30609941", "pos": "first", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "KOALA cohort metagenome study"}, {"acc": "PRJEB5224", "pmid": "24997786", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An integrated catalog of reference genes in the human gut microbiome"}]}, "zhong l": {"display": "Zhong L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1337442", "pmid": "41845058", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasophar…"}]}, "zhong s": {"display": "Zhong S", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB15111", "pmid": "26932197", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Integrated metabolomics and metagenomics analysis of plasma and urine identified microbia…"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}]}, "zhong z": {"display": "Zhong Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA810575", "pmid": "36419187", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes of maternal and infant faecal samples"}]}, "zhong zq": {"display": "Zhong ZQ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1428929", "pmid": "42022809", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota and Metabolome Signatures in Preterm Infants with High versus Low Risk for…"}]}, "zhou c": {"display": "Zhou C", "group": false, "n_studies": 6, "studies": [{"acc": "PRJEB45356", "pmid": "38093016", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJEB45356", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bioactive glycans in a microbiome-directed food for malnourished children"}, {"acc": "PRJNA1067830", "pmid": "37645712", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic f…"}, {"acc": "PRJNA1187541", "pmid": "39753133", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Raw metagenomics sequencing from human hippocampi."}, {"acc": "PRJNA338014", "pmid": "29564400", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA656389", "pmid": "38365259", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Metagenomic sequencing of the digestive tract of buffalo"}, {"acc": "PRJNA657455", "pmid": "38365259", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}]}, "zhou g": {"display": "Zhou G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA806510", "pmid": "40487637", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of Gut Microbiota Mediated Metformin Monotherapy Failure in Type 2 Diabetes Mellitus"}]}, "zhou h": {"display": "Zhou H", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA806510", "pmid": "40487637", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Study of Gut Microbiota Mediated Metformin Monotherapy Failure in Type 2 Diabetes Mellitus"}]}, "zhou j": {"display": "Zhou J", "group": false, "n_studies": 8, "studies": [{"acc": "PRJDB29523", "pmid": "38173792", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783)"}, {"acc": "PRJEB12669", "pmid": "27583441", "pos": null, "reason_code": null, "src": "B", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB14607", "pmid": "25721383", "pos": "last", "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "By taking three metagenomic approaches to reveal the microplankton communities from compo…"}, {"acc": "PRJEB23052", "pmid": "33510860", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJNA1274127", "pmid": null, "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Fecal metagenome of Chinese Sturgeons (Acipenser sinensis) gut microbiota"}, {"acc": "PRJNA296814", "pmid": "36632065", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA516054", "pmid": "33510860", "pos": null, "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Whole metagenomic analysis of the enteric microbiota in children with autism spectrum dis…"}, {"acc": "PRJNA877820", "pmid": "36539432", "pos": "first", "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "zhou jj": {"display": "Zhou JJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA866095", "pmid": "36046746", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Homo sapiens Genome sequencing and assembly"}]}, "zhou l": {"display": "Zhou L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA703757", "pmid": "37673036", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Human gut microbiota raw sequence reads from resistant starch intervention project in pat…"}]}, "zhou m": {"display": "Zhou M", "group": false, "n_studies": 19, "studies": [{"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJNA1002114", "pmid": "37823665", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Direct prediction of carbapenem-resistance for Pseudomonas aeruginosa by whole genome seq…"}, {"acc": "PRJNA1184213", "pmid": "40765991", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "The microbiota-dependent effect of physical activity on Crohn's disease"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "zhou n": {"display": "Zhou N", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB20471", "pmid": "20231444", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Forensic identification using skin bacterial communities - keyboard"}, {"acc": "PRJEB20500", "pmid": "20231444", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Forensic identification using skin bacterial communities - mouse"}, {"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "zhou s": {"display": "Zhou S", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB12669", "pmid": "27583441", "pos": "first", "reason_code": null, "src": "B", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJNA624740", "pmid": "33036549", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing of yak faecal microbiota"}, {"acc": "PRJNA877820", "pmid": "36539432", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "zhou w": {"display": "Zhou W", "group": false, "n_studies": 7, "studies": [{"acc": "PRJEB12669", "pmid": "27583441", "pos": "last", "reason_code": null, "src": "B", "status": "included", "title_short": "Gut microbiota of 10 pairs of Chinese infant twins"}, {"acc": "PRJEB23052", "pmid": "33510860", "pos": "last", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJEB23052", "pmid": "41511111", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "gut metagenome of ASD"}, {"acc": "PRJNA1024085", "pmid": "38423525", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Gut microbiota facilitate adaptation of invasive moths to new host plants"}, {"acc": "PRJNA1040852", "pmid": "37350224", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "CHAN skin Metagenome"}, {"acc": "PRJNA516054", "pmid": "33510860", "pos": "last", "reason_code": "age_child_over_36m", "src": "L", "status": "excluded", "title_short": "Whole metagenomic analysis of the enteric microbiota in children with autism spectrum dis…"}, {"acc": "PRJNA558989", "pmid": "32004459", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Genomics of Staphylococcus epidermidis and contextual metagenome"}, {"acc": "PRJNA595966", "pmid": "30442907", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "C57BL6_NSG_humanFMT"}]}, "zhou x": {"display": "Zhou X", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA427478", "pmid": "24865920", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pomacea canaliculata isolate:SZHN2017 Genome sequencing and assembly"}, {"acc": "PRJNA760967", "pmid": "34829986", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Enterococcus faecium Regulates Honey Bee Developmental Genes"}]}, "zhou xy": {"display": "Zhou XY", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA598014", "pmid": "34454634", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Broiler Chicken Cloacal and Litter Meta-genomic Samples"}]}, "zhou y": {"display": "Zhou Y", "group": false, "n_studies": 4, "studies": [{"acc": "PRJDB28938", "pmid": "39305900", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA0185…"}, {"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}, {"acc": "PRJNA877820", "pmid": "36289225", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}, {"acc": "PRJNA936783", "pmid": "35486954", "pos": "first", "reason_code": "assay_isolate_genome", "src": "B", "status": "excluded", "title_short": "Draft genome sequences of Group B Streptococcus isolates from infected infants or children"}]}, "zhou yl": {"display": "Zhou YL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1428929", "pmid": "42022809", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut Microbiota and Metabolome Signatures in Preterm Infants with High versus Low Risk for…"}]}, "zhou z": {"display": "Zhou Z", "group": false, "n_studies": 46, "studies": [{"acc": "PRJEB24006", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB24006", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal gut-microbiome-derived 12,13 DiHOME impedes tolerance and predicts childhood ato…"}, {"acc": "PRJEB27928", "pmid": "36050292", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB27928", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}, {"acc": "PRJEB32631", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32631", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB32731", "pmid": "36050292", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB32731", "pmid": "38424077", "pos": null, "reason_code": "access_controlled", "src": "L", "status": "excluded", "title_short": "Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohor…"}, {"acc": "PRJEB36820", "pmid": "36050292", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB36820", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Investigating the health status and microbiota in members of the Irish Travelling communi…"}, {"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJEB6456", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB6456", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJEB9524", "pmid": "38424077", "pos": null, "reason_code": "assay_other_nonshotgun", "src": "L", "status": "excluded", "title_short": "Expanded Enteric Virome and Altered Bacterial Microbiome in Acquired Immunodeficiency Syn…"}, {"acc": "PRJNA272371", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA272371", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant fecal microbiome related to eczema"}, {"acc": "PRJNA273761", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA287207", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA287207", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Evaluation of vertical transmission between mother-infant"}, {"acc": "PRJNA290380", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA296814", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA296814", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequenci…"}, {"acc": "PRJNA301903", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA301903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA339914", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA345144", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA345144", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Probiotics in Pregnancy study"}, {"acc": "PRJNA352475", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA352475", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA384716", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA384716", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA385126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA387903", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Intestinal Virome Changes Precede Autoimmunity in Type I Diabetes Susceptible Children"}, {"acc": "PRJNA390646", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA390646", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA396794", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA396794", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA407341", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA436562", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA436562", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Bangladesh Infant Gut Metagenomes"}, {"acc": "PRJNA446038", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "viral metagenome Raw sequence reads"}, {"acc": "PRJNA473126", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA491626", "pmid": "38424077", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut virome of Cameroonians living in close proximity with bats"}, {"acc": "PRJNA521878", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA521878", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut metagenome of infants in the neonatal intensive care unit"}, {"acc": "PRJNA524703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA542703", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA542703", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Whole genome metagenomic analysis of the gut microbiome of differently fed infants"}, {"acc": "PRJNA543520", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA543520", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of an…"}, {"acc": "PRJNA545408", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Longitudinal study of the human gut virome"}, {"acc": "PRJNA555020", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA555020", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Fecal microbiota in early life, annotated shotgun sequencing data"}, {"acc": "PRJNA562766", "pmid": "36050292", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA562766", "pmid": "38424077", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Fecal microbiome analysis of patients with chronic obstructive pulmonary disease"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA657818", "pmid": "36050292", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA657818", "pmid": "38424077", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Delivery mode impacts newborn gut colonization efficiency"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "zhu a": {"display": "Zhu A", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB12357", "pmid": "27126044", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB28730", "pmid": "30658995", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic stool samples in time series"}, {"acc": "PRJEB46778", "pmid": "27126044", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "zhu c": {"display": "Zhu C", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA300541", "pmid": "35484115", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA504891", "pmid": "35484115", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA589343", "pmid": "32912596", "pos": "last", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "The gut microbiota changes in Chinese children with autism spectrum disorders"}]}, "zhu d": {"display": "Zhu D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1403004", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study"}]}, "zhu g": {"display": "Zhu G", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA821338", "pmid": "36259361", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Bacterial pathogens and antimicrobial resistance diagnosis workflow using Nanopore adapti…"}, {"acc": "PRJNA869513", "pmid": "36259361", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "An ultra-sensitive bacterial pathogen and antimicrobial resistance diagnosis workflow usi…"}]}, "zhu h": {"display": "Zhu H", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB63183", "pmid": "37457984", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Interactions Between Bifidobacterium and Bacteroides and Human Milk Oligosaccharides and…"}, {"acc": "PRJNA338014", "pmid": "33827948", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral discovery and whole genome sequencing at University of Washington Virology"}, {"acc": "PRJNA986854", "pmid": "40467587", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "stool sample of paired mother-infant for 16S rRNA sequencing analysis"}]}, "zhu j": {"display": "Zhu J", "group": false, "n_studies": 9, "studies": [{"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJNA1031773", "pmid": "41411654", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Impacts of COVID-19 Pandemic on Early Life Gut Microbiome"}, {"acc": "PRJNA1402009", "pmid": "41726387", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "faeces of British shorthair Raw sequence reads"}, {"acc": "PRJNA422434", "pmid": "23023125", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "A metagenome-wide association study of gut microbiota in type 2 diabetes."}, {"acc": "PRJNA504891", "pmid": "37596617", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA524703", "pmid": "40600714", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut virome"}, {"acc": "PRJNA529124", "pmid": "37596617", "pos": "first", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA835720", "pmid": "40600714", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human feces Viral/Bacterial Metagenome"}, {"acc": "PRJNA884688", "pmid": "36778973", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut microbiota and protein source"}]}, "zhu k": {"display": "Zhu K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJDB38192", "pmid": "37674580", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Utility of clinical metagenomics in diagnosing malignancies in a cohort of patients with…"}]}, "zhu l": {"display": "Zhu L", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA336061", "pmid": "28801639", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Prevotella enterotype related metagenome sequencing"}]}, "zhu q": {"display": "Zhu Q", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB42155", "pmid": "35087228", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "UCSD IBD 200 Patient Cohort Multi-omic Project"}, {"acc": "PRJNA504891", "pmid": "32427907", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA597371", "pmid": "34193290", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Intestinal Selective Pressure and Coevolution Project Part 4 human placebo Metagenome"}, {"acc": "PRJNA602729", "pmid": "34079079", "pos": "first", "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}, {"acc": "PRJNA602729", "pmid": "40158141", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Ecological and evolutionary alteration in the GD intestinal microbiome part01"}]}, "zhu r": {"display": "Zhu R", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1170175", "pmid": "40248366", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Vaginal Virome of Healthy Women and Patients with Vaginitis"}]}, "zhu s": {"display": "Zhu S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA427478", "pmid": "24865920", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Pomacea canaliculata isolate:SZHN2017 Genome sequencing and assembly"}]}, "zhu w": {"display": "Zhu W", "group": false, "n_studies": 20, "studies": [{"acc": "PRJEB52774", "pmid": "39591974", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "HELMi infant stool WGS metagenomes (3 weeks to 1 year) and parental stool WGS metagenomes"}, {"acc": "PRJEB6456", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}, {"acc": "PRJNA273761", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA339914", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA376566", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA384716", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "human metagenome"}, {"acc": "PRJNA390646", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Microbiota and Probiotic Intake Study (IMPRINT)"}, {"acc": "PRJNA473126", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA631602", "pmid": "32578861", "pos": "last", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Rumen metagenome of Hu sheep fed urea"}, {"acc": "PRJNA63661", "pmid": "38882494", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Microbial composition of samples from infant gut"}, {"acc": "PRJNA657455", "pmid": "34118976", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastroin…"}]}, "zhu y": {"display": "Zhu Y", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA1033532", "pmid": "38014294", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Evaluating the impact of pharmaceuticals on the human gut microbiome Raw sequence reads"}, {"acc": "PRJNA499081", "pmid": "33794724", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transpl…"}, {"acc": "PRJNA719915", "pmid": "34465850", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Tumor microbiome contributes to an aggressive phenotype in the basal-like subtype of panc…"}, {"acc": "PRJNA779578", "pmid": "36503572", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Cervus nippon Raw sequence reads"}, {"acc": "PRJNA986854", "pmid": "40467587", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "stool sample of paired mother-infant for 16S rRNA sequencing analysis"}]}, "zhu yg": {"display": "Zhu YG", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA598014", "pmid": "34454634", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Broiler Chicken Cloacal and Litter Meta-genomic Samples"}]}, "zhu zj": {"display": "Zhu ZJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA730640", "pmid": "34262484", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}, {"acc": "PRJNA730640", "pmid": "34646837", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "The composition of gut microbiota in biliary atresia"}]}, "zhuang j": {"display": "Zhuang J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1238458", "pmid": "42654723", "pos": null, "reason_code": "assay_amplicon_misfiled", "src": "L", "status": "excluded", "title_short": "Raw data of 16S rRNA sequencing of preterm infants' feces (NEC study)"}]}, "zhuang y": {"display": "Zhuang Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1052964", "pmid": "39034349", "pos": "first", "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA1052964", "pmid": "40860434", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "calf microbiome"}, {"acc": "PRJNA741606", "pmid": "38254181", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Rumen content metagenome of goat kids"}]}, "zhuchenko na": {"display": "Zhuchenko NA", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA547700", "pmid": "31671744", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Lake Baikal Viromes Raw sequence reads"}]}, "zieff m": {"display": "Zieff M", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB32631", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early_life_microbiota_colonisation"}, {"acc": "PRJEB6456", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}, {"acc": "PRJNA1128723", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA300541", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}, {"acc": "PRJNA339914", "pmid": "39809768", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}]}, "zieff mr": {"display": "Zieff MR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1128723", "pmid": "40586263", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}, {"acc": "PRJNA1128723", "pmid": "42311381", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human gut metagenomes of South African infants"}]}, "ziegler ag": {"display": "Ziegler AG", "group": false, "n_studies": 5, "studies": [{"acc": "PRJNA268964", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human Gut Microbiome Metagenome"}, {"acc": "PRJNA278393", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Metagenome sequencing of the Hadza hunter-gatherer gut microbiota."}, {"acc": "PRJNA392180", "pmid": "35672407", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania"}, {"acc": "PRJNA485056", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA497734", "pmid": "35672407", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome stu…"}]}, "ziegler m": {"display": "Ziegler M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA437202", "pmid": "32438323", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Red Sea coral metagenomes"}, {"acc": "PRJNA437202", "pmid": "33117317", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Red Sea coral metagenomes"}]}, "zielinska k": {"display": "Zielińska K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB91718", "pmid": "38962119", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "COVID-19 Microbiome - deep samples"}]}, "ziesemer k": {"display": "Ziesemer K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA445215", "pmid": "29959351", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Differential DNA preservation in archaeological dental calculus and dentin"}]}, "zijlstra rt": {"display": "Zijlstra RT", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA494875", "pmid": "30914068", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Metagenomic Reconstructions of Gut Microbiome in Weanling Pigs"}]}, "zilber d": {"display": "Zilber D", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA992639", "pmid": "38876584", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "Novel misos shape distinct microbial ecologies"}]}, "zilberman-schapira g": {"display": "Zilberman-Schapira G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "zimmerman md": {"display": "Zimmerman MD", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA604820", "pmid": "34936382", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Skin metagenome from antibiotics treated healthy human subjects"}]}, "zimmermann m": {"display": "Zimmermann M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA1081952", "pmid": "39367018", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "BRISC microbiome sub study"}]}, "zimmermann mb": {"display": "Zimmermann MB", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB52748", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Gut microbiome function and composition in infants from rural Kenya and association with…"}, {"acc": "PRJEB6456", "pmid": "36794816", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life"}]}, "zimmermann p": {"display": "Zimmermann P", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB55714", "pmid": "37397142", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analyses of the intestinal microbiome from neonates in the MIS BAIR trial"}, {"acc": "PRJEB55714", "pmid": "41853385", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic analyses of the intestinal microbiome from neonates in the MIS BAIR trial"}, {"acc": "PRJEB79382", "pmid": "39932403", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Stool microbiota stability"}, {"acc": "PRJEB79382", "pmid": null, "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Stool microbiota stability"}]}, "zimmermann-kogadeeva m": {"display": "Zimmermann-Kogadeeva M", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "zindl cl": {"display": "Zindl CL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA542320", "pmid": "31700190", "pos": null, "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Bacteria Genome sequencing and assembly"}]}, "zink a": {"display": "Zink A", "group": false, "n_studies": 4, "studies": [{"acc": "PRJEB11511", "pmid": "26744403", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the…"}, {"acc": "PRJNA246597", "pmid": "24809476", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Shotgun and whole-genome-enriched DNA extracted from ancient human teeth, bones, and hair…"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}]}, "zinsou jf": {"display": "Zinsou JF", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB46788", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Codiversification of gut microbiota with humans"}, {"acc": "PRJEB86954", "pmid": "41358671", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Integrating Metagenomics for Helminth Detection"}, {"acc": "PRJNA48479", "pmid": "41358671", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}]}, "zinsstag j": {"display": "Zinsstag J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA300541", "pmid": "38049420", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Antibiotic resistance exchange between microbiota in resource-poor settings in Latin Amer…"}]}, "zisman tl": {"display": "Zisman TL", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA285502", "pmid": "26288277", "pos": "last", "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal microbiota transplantation (FMT) for ulcerative colitis"}]}, "zitvogel l": {"display": "Zitvogel L", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB22863", "pmid": "29097494", "pos": "last", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut mictobiota composition correlation with the clinical outcome of NSCLC and RCC patient…"}, {"acc": "PRJEB85676", "pmid": "40068595", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Low-Dose Irradiation of the Gut Improves the Efficacy of PD-L1 Blockade in Metastatic Can…"}]}, "ziv o": {"display": "Ziv O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA606271", "pmid": "33500411", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Neonatal antibiotic exposure impairs child growth during the first six years of life"}]}, "zivkovic am": {"display": "Zivkovic AM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB15633", "pmid": "28079170", "pos": "last", "reason_code": null, "src": "L", "status": "included", "title_short": "Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides…"}]}, "zmora n": {"display": "Zmora N", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB11532", "pmid": "26590418", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Towards personalized nutrition by prediction of glycemic responses"}]}, "zobniw cm": {"display": "Zobniw CM", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA770295", "pmid": "34941392", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response"}]}, "zoetendal e": {"display": "Zoetendal E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB46778", "pmid": "28978426", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Metabolic Syndrome"}]}, "zoetendal eg": {"display": "Zoetendal EG", "group": false, "n_studies": 3, "studies": [{"acc": "PRJEB12357", "pmid": "22728514", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Durable coexistence of donor and recipient strains after fecal microbiota transplantation"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB46777", "pmid": "25836986", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Fecal Microbiota Transplantation for Ulcerative Colitis."}]}, "zolfo m": {"display": "Zolfo M", "group": false, "n_studies": 15, "studies": [{"acc": "PRJEB15371", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition"}, {"acc": "PRJEB45799", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The person-to-person transmission landscape of the gut and oral microbiomes"}, {"acc": "PRJNA231909", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}, {"acc": "PRJNA328899", "pmid": "30661755", "pos": null, "reason_code": "site_unknown", "src": "L", "status": "excluded", "title_short": "Mongolian Metagenome"}, {"acc": "PRJNA339914", "pmid": "28144631", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Vertical Transmission Pilot"}, {"acc": "PRJNA352475", "pmid": "30001516", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mother-infant microbiome vertical transmission"}, {"acc": "PRJNA356102", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome in RA"}, {"acc": "PRJNA380031", "pmid": "28651630", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maternal inheritance of bifidobacterial communities and bifidophages in infants through v…"}, {"acc": "PRJNA447983", "pmid": "30936548", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts"}, {"acc": "PRJNA48479", "pmid": "30661755", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human m…"}, {"acc": "PRJNA485056", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from rural communities from north-eastern Madagas…"}, {"acc": "PRJNA504891", "pmid": "30661755", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA504891", "pmid": "32427907", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ethiopian individuals"}, {"acc": "PRJNA529124", "pmid": "31607556", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of stool samples from Ghanaian individuals"}, {"acc": "PRJNA613947", "pmid": "36653448", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "human gut metagenome Metagenome"}, {"acc": "PRJNA716780", "pmid": "36653448", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Mothers/children Metagenome"}]}, "zollkau j": {"display": "Zöllkau J", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA799199", "pmid": "35256725", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Evaluation of microbiome enrichment and host DNA depletion in human vaginal samples using…"}]}, "zomorrodi ar": {"display": "Zomorrodi AR", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA486782", "pmid": "32917289", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}, {"acc": "PRJNA486782", "pmid": "34253606", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Influence of early environmental factors on the establishment and development of gut micr…"}]}, "zonensain k": {"display": "Zonensain K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA524170", "pmid": "31605691", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Resistant microbiome underlies antibiotic therapy in pouchitis"}]}, "zong b": {"display": "Zong B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA660305", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism, up-regulated colon inf…"}, {"acc": "PRJNA660966", "pmid": "35663372", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Hindgut microbiota dysbiosis alter glycerophospholipid metabolism and up-regulated colon…"}]}, "zordao op": {"display": "Zordão OP", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA894691", "pmid": "37082122", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Maternal exposure to air pollution changes gut microbiota in mice"}]}, "zorrilla f": {"display": "Zorrilla F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB29052", "pmid": "39794474", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "The effect of probiotic supplementation on the gut microbiota and antibiotic resistome de…"}]}, "zorz jk": {"display": "Zorz JK", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA377096", "pmid": "31530813", "pos": "first", "reason_code": "host_nonhuman", "src": "B", "status": "excluded", "title_short": "Soda lake innocuated bioreactors"}]}, "zotti f": {"display": "Zotti F", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB67641", "pmid": "38709303", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental Plaque Microbiota Sequence Counts for Microbial Profiling and Resistance Genes Det…"}]}, "zou h": {"display": "Zou H", "group": false, "n_studies": 3, "studies": [{"acc": "PRJNA775062", "pmid": "35913177", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Landscapes of bacterial, viral and metabolic signatures and their interaction in early-we…"}, {"acc": "PRJNA847006", "pmid": "37280255", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads"}, {"acc": "PRJNA847017", "pmid": "37280255", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "gut metagenome Raw sequence reads of GF mice"}]}, "zou jj": {"display": "Zou JJ", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA901878", "pmid": "37120646", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of s…"}]}, "zou q": {"display": "Zou Q", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA950577", "pmid": "37306468", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "L", "status": "excluded", "title_short": "Dynamic associations between the respiratory tract and gut antibiotic resistome of patien…"}]}, "zou r": {"display": "Zou R", "group": false, "n_studies": 17, "studies": [{"acc": "PRJEB39610", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Longitudinal metagenomic analysis of the gut microbiome in preterm infants diagnosed with…"}, {"acc": "PRJNA273761", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from human infant fecal samples with and without necrotizing enterocolitis"}, {"acc": "PRJNA290380", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia…"}, {"acc": "PRJNA294605", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomes from 11 human infant fecal samples hospitalized in the same intensive care un…"}, {"acc": "PRJNA301903", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomic sequencing of preterm infant gut microbiota raw sequence reads"}, {"acc": "PRJNA322188", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body…"}, {"acc": "PRJNA327106", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Raw reads of the microbiota of premature infant mouth, skin, and gut"}, {"acc": "PRJNA376566", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (S2_2013 and NIHY2_2012 cohorts)"}, {"acc": "PRJNA379120", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Colonization, succession and evolution of the earliest human gastrointestinal microbiome"}, {"acc": "PRJNA396794", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "preterm infant gut metagenomes (NIH Y4 Cohort)"}, {"acc": "PRJNA473126", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Infant Diet and Maternal Gestational Weight Gain Influence Functional Maturation of the I…"}, {"acc": "PRJNA475246", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Strain-level identification of mother-to-child bacterial transmission during the first fe…"}, {"acc": "PRJNA489090", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Human infant gut metagenome, infant shotgun sequencing"}, {"acc": "PRJNA630999", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Premature infant microbiome Metagenome"}, {"acc": "PRJNA698986", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Early-life metagenomes from human infant fecal samples with matched maternal sample"}, {"acc": "PRJNA799247", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Metagenomics of preterm infant stool"}, {"acc": "PRJNA872399", "pmid": "41025564", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assem…"}]}, "zou x": {"display": "Zou X", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA973819", "pmid": "38188910", "pos": null, "reason_code": "site_excluded", "src": "L", "status": "excluded", "title_short": "Pathogenetic characterization of a Micrococcus luteus strain isolated from an infant"}]}, "zou y": {"display": "Zou Y", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA1090034", "pmid": "39706182", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Metagenomic sequencing for facel samples from subjects infected with VZV"}, {"acc": "PRJNA877820", "pmid": "36539432", "pos": null, "reason_code": null, "src": "L", "status": "human_review", "title_short": "Metagenomics of gut microbiota"}]}, "zubeldia-varela e": {"display": "Zubeldia-Varela E", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA991269", "pmid": "38589361", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Comparative characterization of the infant gut microbiome and their maternal lineage by a…"}]}, "zucker jd": {"display": "Zucker JD", "group": false, "n_studies": 5, "studies": [{"acc": "PRJEB23292", "pmid": "29899081", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dysbiosis, including decreased gut microbial richness (MGR) and composition modifications…"}, {"acc": "PRJEB41311", "pmid": "34880489", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Medication signatures dominate microbiome and metabolome alterations in cardiometabolic d…"}, {"acc": "PRJEB4336", "pmid": "23985870", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Richness of human gut microbiome correlates with metabolic markers"}, {"acc": "PRJEB4413", "pmid": "23985875", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Dietary intervention impact on gut microbial gene richness based on SOLiD next generation…"}, {"acc": "PRJEB46098", "pmid": "35177860", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome and Metabolome in Ischaemic Heart Disease"}]}, "zuffa s": {"display": "Zuffa S", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA231909", "pmid": "41339624", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "A prospective, longitudinal analysis of the developing gut microbiome in infants en route…"}]}, "zulianello g": {"display": "Zulianello G", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB67641", "pmid": "38709303", "pos": null, "reason_code": "site_excluded", "src": "B", "status": "excluded", "title_short": "Dental Plaque Microbiota Sequence Counts for Microbial Profiling and Resistance Genes Det…"}]}, "zumbo p": {"display": "Zumbo P", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA271013", "pmid": "26594662", "pos": null, "reason_code": "host_environmental", "src": "B", "status": "excluded", "title_short": "New York City MTA subway samples Metagenome"}]}, "zuo b": {"display": "Zuo B", "group": false, "n_studies": 2, "studies": [{"acc": "PRJNA781781", "pmid": "38169289", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of Lactobacillus plantarum P-8 on Growth Performance and Gut Microbiota of Weaned…"}, {"acc": "PRJNA801914", "pmid": "38982403", "pos": null, "reason_code": "host_nonhuman", "src": "L", "status": "excluded", "title_short": "Effects of spraying Lactobacillus plantarum P-8 on growth characteristics of neonatal pig…"}]}, "zuo t": {"display": "Zuo T", "group": false, "n_studies": 4, "studies": [{"acc": "PRJNA353598", "pmid": "28539351", "pos": "first", "reason_code": "assay_other_nonshotgun", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA504921", "pmid": "30842211", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "viral metagenome Metagenome"}, {"acc": "PRJNA506811", "pmid": "30842211", "pos": "first", "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "HUMAN GUT RECTAL BACTERIA Metagenome"}, {"acc": "PRJNA644456", "pmid": "33785557", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Obesity gut microbiome metagenomic sequencing"}]}, "zuo z": {"display": "Zuo Z", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA695070", "pmid": "38818221", "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Transmission and formation of microbiota in the ealry life"}]}, "zuza a": {"display": "Zuza A", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB63570", "pmid": null, "pos": null, "reason_code": null, "src": "L", "status": "included", "title_short": "Klebsiella_transmission_and_immunity_on_Chatinkha_nursery__Neo_TRACK_"}]}, "zwittink rd": {"display": "Zwittink RD", "group": false, "n_studies": 2, "studies": [{"acc": "PRJEB44119", "pmid": "35659906", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Gut colonisation by extended-spectrum β-lactamase-producing Escherichia coli and its asso…"}, {"acc": "PRJEB44737", "pmid": "34126062", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Metagenomic shotgun sequencing of healthy stool bank donors and multiple recurrent Clostr…"}]}, "zych k": {"display": "Zych K", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB27928", "pmid": "30936547", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific…"}]}, "zydek m": {"display": "Zydek M", "group": false, "n_studies": 1, "studies": [{"acc": "PRJNA737472", "pmid": "35365713", "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}, {"acc": "PRJNA737472", "pmid": "39122767", "pos": null, "reason_code": "age_adult_only", "src": "L", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}, {"acc": "PRJNA737472", "pmid": null, "pos": null, "reason_code": "age_adult_only", "src": "B", "status": "excluded", "title_short": "Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplan…"}]}, "оzer o": {"display": "Ӧzer O", "group": false, "n_studies": 1, "studies": [{"acc": "PRJEB66169", "pmid": "41540446", "pos": null, "reason_code": "age_unknown_no_evidence", "src": "B", "status": "excluded", "title_short": "Ancient DNA study provides clues to leprosy susceptibility in medieval Europe"}]}}