# REGISTRY_REPORT — registry_studies (R2026.25) *Full registry universe.* Studies: **64,369** · runs: **2,334,512** · samples: **2,028,236** · needs-LLM (stage pending): **417** ### host_human | value | studies | |---|---:| | no | 43,775 | | unknown | 13,696 | | yes | 6,652 | | mixed | 246 | ### body_site_primary | value | studies | |---|---:| | (null) | 43,760 | | unknown_site | 14,018 | | gut_stool | 3,349 | | blood_tissue | 1,182 | | respiratory_lower | 511 | | oral | 444 | | vaginal_urogenital | 258 | | skin | 245 | | nasal_nasopharyngeal | 195 | | other_site | 171 | | multi_site | 149 | | eye_ear | 60 | | milk | 27 | ### life_stage_primary | value | studies | |---|---:| | (null) | 43,765 | | unknown_age | 17,987 | | adult | 1,509 | | infant | 450 | | child | 433 | | mixed_ages | 86 | | elderly | 59 | | neonate | 51 | | adolescent | 29 | ### assay | value | studies | |---|---:| | shotgun_dna | 45,355 | | other | 17,327 | | isolate_genome | 526 | | amplicon_misfiled | 391 | | mixed | 357 | | rna | 181 | | amplicon | 132 | | unknown | 97 | | assembly_only | 3 | ### classification_stage | value | studies | |---|---:| | deterministic_rule | 52,142 | | sonnet_x2 | 5,164 | | deterministic_prior | 4,808 | | opus_adjudicated | 1,663 | | pending | 417 | | owner_decision | 96 | | curator_audit | 79 | ### in_infant_catalog | value | studies | |---|---:| | not_screened | 54,788 | | exclude | 9,140 | | include | 389 | | uncertain | 52 | ### access | value | studies | |---|---:| | open | 64,368 | | controlled | 1 | ### scope_memberships (a study can be in several) | scope | studies | |---|---:| | human_all | 4,675 | | gut_adult | 1,202 | | blood_tissue | 1,127 | | unknown_site | 993 | | respiratory | 769 | | oral | 586 | | infant_gut | 389 | | gut_child | 368 | | vaginal_urogenital | 282 | | skin | 256 | | other_site | 251 | | milk | 64 | ### registry_universe_audit (enumeration track) | slice | partition | tag | query | ena_count | rows_pulled | complete | seconds | |:--------|:------------------------|:----------------------------|:-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------------:|--------------:|:-----------|----------:| | S1 | y2010 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2010-01-01 AND first_public<=2010-12-31 | 1862 | 1862 | True | 0 | | S1 | y2011 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2011-01-01 AND first_public<=2011-12-31 | 1045 | 1045 | True | 0 | | S1 | y2012 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2012-01-01 AND first_public<=2012-12-31 | 7645 | 7645 | True | 0.1 | | S1 | y2013 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2013-01-01 AND first_public<=2013-12-31 | 6019 | 6019 | True | 0 | | S1 | y2014 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2014-01-01 AND first_public<=2014-12-31 | 11247 | 11247 | True | 0.1 | | S1 | y2015 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2015-01-01 AND first_public<=2015-12-31 | 24668 | 24668 | True | 0.2 | | S1 | y2016 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2016-01-01 AND first_public<=2016-12-31 | 18494 | 18494 | True | 0.1 | | S1 | y2017 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2017-01-01 AND first_public<=2017-12-31 | 35544 | 35544 | True | 0.3 | | S1 | y2018 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2018-01-01 AND first_public<=2018-12-31 | 53985 | 53985 | True | 0.4 | | S1 | y2019 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2019-01-01 AND first_public<=2019-12-31 | 87954 | 87954 | True | 0.7 | | S1 | y2020 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2020-01-01 AND first_public<=2020-12-31 | 87741 | 87741 | True | 0.7 | | S1 | y2021 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2021-01-01 AND first_public<=2021-12-31 | 99071 | 99071 | True | 0.8 | | S1 | y2022 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2022-01-01 AND first_public<=2022-12-31 | 111886 | 111886 | True | 0.9 | | S1 | y2023q1 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2023-01-01 AND first_public<=2023-03-31 | 44101 | 44101 | True | 0.3 | | S1 | y2023q2 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2023-04-01 AND first_public<=2023-06-30 | 44844 | 44844 | True | 0.3 | | S1 | y2023q3 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2023-07-01 AND first_public<=2023-09-30 | 36324 | 36324 | True | 0.3 | | S1 | y2023q4 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2023-10-01 AND first_public<=2023-12-31 | 36046 | 36046 | True | 0.3 | | S1 | y2024q1 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2024-01-01 AND first_public<=2024-03-31 | 53477 | 53477 | True | 0.4 | | S1 | y2024q2 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2024-04-01 AND first_public<=2024-06-30 | 41424 | 41424 | True | 0.3 | | S1 | y2024q3 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2024-07-01 AND first_public<=2024-09-30 | 48802 | 48802 | True | 0.4 | | S1 | y2024q4 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2024-10-01 AND first_public<=2024-12-31 | 75871 | 75871 | True | 0.6 | | S1 | y2025q1 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2025-01-01 AND first_public<=2025-03-31 | 60575 | 60575 | True | 0.5 | | S1 | y2025q2 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2025-04-01 AND first_public<=2025-06-30 | 66581 | 66581 | True | 0.6 | | S1 | y2025q3 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2025-07-01 AND first_public<=2025-09-30 | 54876 | 54876 | True | 0.4 | | S1 | y2025q4 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2025-10-01 AND first_public<=2025-12-31 | 75675 | 75675 | True | 0.6 | | S1 | y2026q1 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2026-01-01 AND first_public<=2026-03-31 | 79923 | 79923 | True | 0.6 | | S1 | y2026q2 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2026-04-01 AND first_public<=2026-06-30 | 103156 | 103156 | True | 0.8 | | S1 | y2026q3 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2026-07-01 AND first_public<=2026-09-30 | 66596 | 66596 | True | 0.5 | | S1 | y2026q4 | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2026-10-01 AND first_public<=2026-12-31 | 0 | 0 | True | 0 | | S1 | fill_missing_from_index | shotgun_frame_free | run_accession IN (<29952 accessions missing from partitions>) | 29952 | 29952 | True | 0 | | S1 | TOTAL | shotgun_frame_free | library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") | 1465384 | 1465384 | True | 11.2 | | S2 | all | misfiled_genomic_human_taxa | library_source="GENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND (tax_eq(408170) OR tax_eq(433733) OR tax_eq(447426) OR tax_eq(539655) OR tax_eq(646099) OR tax_eq(749906) OR tax_eq(1131769) OR tax_eq(1504969) OR tax_eq(1630596) OR tax_eq(1632839) OR tax_eq(1633571) OR tax_eq(1679718) OR tax_eq(1712573) OR tax_eq(1774142) OR tax_eq(1837932) OR tax_eq(1842734) OR tax_eq(1861841) OR tax_eq(2489051) OR tax_eq(2516875) OR tax_eq(2517771) OR tax_eq(2705415)) | 62089 | 62089 | True | 0.5 | | S2 | TOTAL | misfiled_genomic_human_taxa | library_source="GENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND (tax_eq(408170) OR tax_eq(433733) OR tax_eq(447426) OR tax_eq(539655) OR tax_eq(646099) OR tax_eq(749906) OR tax_eq(1131769) OR tax_eq(1504969) OR tax_eq(1630596) OR tax_eq(1632839) OR tax_eq(1633571) OR tax_eq(1679718) OR tax_eq(1712573) OR tax_eq(1774142) OR tax_eq(1837932) OR tax_eq(1842734) OR tax_eq(1861841) OR tax_eq(2489051) OR tax_eq(2516875) OR tax_eq(2517771) OR tax_eq(2705415)) | 62089 | 62089 | True | 0.5 | | S3 | all | adjudication_other_tc_wga | (library_strategy="OTHER" OR library_strategy="Targeted-Capture" OR library_strategy="WGA") AND (library_source="METAGENOMIC" OR (library_source="OTHER" AND (host_tax_id=9606 OR tax_eq(9606) OR (tax_eq(408170) OR tax_eq(433733) OR tax_eq(447426) OR tax_eq(539655) OR tax_eq(646099) OR tax_eq(749906) OR tax_eq(1131769) OR tax_eq(1504969) OR tax_eq(1630596) OR tax_eq(1632839) OR tax_eq(1633571) OR tax_eq(1679718) OR tax_eq(1712573) OR tax_eq(1774142) OR tax_eq(1837932) OR tax_eq(1842734) OR tax_eq(1861841) OR tax_eq(2489051) OR tax_eq(2516875) OR tax_eq(2517771) OR tax_eq(2705415)))) OR (library_source="GENOMIC" AND (tax_eq(408170) OR tax_eq(433733) OR tax_eq(447426) OR tax_eq(539655) OR tax_eq(646099) OR tax_eq(749906) OR tax_eq(1131769) OR tax_eq(1504969) OR tax_eq(1630596) OR tax_eq(1632839) OR tax_eq(1633571) OR tax_eq(1679718) OR tax_eq(1712573) OR tax_eq(1774142) OR tax_eq(1837932) OR tax_eq(1842734) OR tax_eq(1861841) OR tax_eq(2489051) OR tax_eq(2516875) OR tax_eq(2517771) OR tax_eq(2705415)))) | 457755 | 457755 | True | 46.4 | | S3 | TOTAL | adjudication_other_tc_wga | (library_strategy="OTHER" OR library_strategy="Targeted-Capture" OR library_strategy="WGA") AND (library_source="METAGENOMIC" OR (library_source="OTHER" AND (host_tax_id=9606 OR tax_eq(9606) OR (tax_eq(408170) OR tax_eq(433733) OR tax_eq(447426) OR tax_eq(539655) OR tax_eq(646099) OR tax_eq(749906) OR tax_eq(1131769) OR tax_eq(1504969) OR tax_eq(1630596) OR tax_eq(1632839) OR tax_eq(1633571) OR tax_eq(1679718) OR tax_eq(1712573) OR tax_eq(1774142) OR tax_eq(1837932) OR tax_eq(1842734) OR tax_eq(1861841) OR tax_eq(2489051) OR tax_eq(2516875) OR tax_eq(2517771) OR tax_eq(2705415)))) OR (library_source="GENOMIC" AND (tax_eq(408170) OR tax_eq(433733) OR tax_eq(447426) OR tax_eq(539655) OR tax_eq(646099) OR tax_eq(749906) OR tax_eq(1131769) OR tax_eq(1504969) OR tax_eq(1630596) OR tax_eq(1632839) OR tax_eq(1633571) OR tax_eq(1679718) OR tax_eq(1712573) OR tax_eq(1774142) OR tax_eq(1837932) OR tax_eq(1842734) OR tax_eq(1861841) OR tax_eq(2489051) OR tax_eq(2516875) OR tax_eq(2517771) OR tax_eq(2705415)))) | 457755 | 457755 | True | 46.4 |