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HMP1 healthy adult reference (Human Microbiome Project, WGS)
Benchmark and reference cohorts · collection id hmp1-healthy-adults
The NIH Human Microbiome Project phase 1 shotgun metagenomes of clinically healthy US adults (Houston and St Louis), the most reused healthy-adult reference set; the BioProject spans all HMP body sites, so restrict to gut samples with body_site_class.
Open in the sample explorer (530 samples)
2
studies with member samples
530
member samples in this release
Membership rule
| Studies | PRJNA48479, PRJNA275349 |
| body_site_class | primary |
PRJNA275349 is the HMP phase III WGS deposit (JCVI). Both BioProjects contain oral, skin and vaginal samples; the body_site_class filter keeps the gut ones.
Composition
Age category
| unknown | 296 |
| adult | 234 |
Country
| US | 244 |
Health condition
| healthy_control Healthy / control | 530 |
Member studies (2)
| Study | Title | Member samples | First public |
|---|---|---|---|
| PRJNA48479 | Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human microbiome samples: Production Phase | 441 | 2010 |
| PRJNA275349 | Human Microbiome Environment Metagenome | 89 | 2015 |