What changed in R2026.25 (package 1.20.0, 2026-10-12)
78,512
sample × field values added (46,920 samples, 215 studies)
0
catalog studies added
0
registry studies added
Values added, by field
| field | values | samples | studies |
|---|---|---|---|
| collection_date | 16,465 | 16,465 | 25 |
| location_site | 9,894 | 9,894 | 56 |
| location_region | 8,574 | 8,574 | 27 |
| health_condition | 6,456 | 6,456 | 39 |
| sex | 6,244 | 6,244 | 42 |
| location_locality | 4,952 | 4,952 | 24 |
| antibiotic_exposure | 4,751 | 4,751 | 31 |
| health_condition_detail | 3,784 | 3,784 | 29 |
| age_at_collection_days | 3,270 | 3,270 | 35 |
| diet | 3,113 | 3,113 | 9 |
| bmi | 2,370 | 2,370 | 18 |
| timepoint_label | 2,083 | 2,083 | 15 |
| smoking_status | 1,520 | 1,520 | 8 |
| subject_id | 1,507 | 1,507 | 12 |
| intervention | 1,292 | 1,292 | 10 |
| country | 1,252 | 1,252 | 13 |
| medication | 542 | 542 | 6 |
| lifestyle | 392 | 392 | 4 |
| lifestyle_detail | 51 | 51 | 1 |
By route: R3 42,250 · R2 25,950 · R4 10,312
Studies with the most added values
| study | title | values | samples touched | samples in study | fields | routes |
|---|---|---|---|---|---|---|
| PRJEB108612 | MOMmy-Microbiome_Epigenome_Neurodevelopment | 5,328 | 5,328 | 5,328 | collection_date | R3 |
| PRJEB32631 | Early_life_microbiota_colonisation | 3,906 | 2,387 | 2,387 | antibiotic_exposure, collection_date, diet, timepoint_label | R2, R3 |
| PRJNA850529 | Host factors associated with gut mycobiome structure | 3,763 | 922 | 923 | antibiotic_exposure, bmi, diet, health_condition, health_condition_detail, medication, smoking_status, subject_id | R2 |
| PRJNA1237248 | MicroN Study Prescient data | 3,587 | 897 | 897 | age_at_collection_days, bmi, health_condition, sex | R2 |
| PRJEB63587 | A microbiota-directed therapeutic food for severely malnourished children evaluated following acute | 3,038 | 1,519 | 1,519 | antibiotic_exposure, location_region | R3, R4 |
| PRJNA1195215 | Human gut metagenome | 2,810 | 1,401 | 1,710 | age_at_collection_days, health_condition, sex | R2 |
| PRJNA821542 | Longitudinal gut metagenomes from mothers and their infants in the EDIA study | 2,754 | 918 | 918 | collection_date, location_locality, location_region | R3 |
| PRJNA1060349 | Weaning accelerates and transforms within-host adaptation in the infant gut microbiome | 2,394 | 1,197 | 1,197 | location_locality, location_region | R3 |
| PRJEB32762 | iMSMS Baranzini data | 2,250 | 2,250 | 3,765 | collection_date | R3 |
| PRJEB62678 | BASIC: Biology, Affect, Stress, Imaging and Cognition in pregnancy | 2,085 | 926 | 926 | collection_date, location_region, location_site | R4 |
| PRJNA974858 | Temporal shotgun sequencing of the gut microbiota of healthy adults taking ciprofloxacin | 2,080 | 1,040 | 1,040 | health_condition, health_condition_detail | R3 |
| PRJEB9403 | BAMBI__Baby_Associated_MicroBiota_of_the_Intestine_ | 2,027 | 338 | 1,486 | age_at_collection_days, antibiotic_exposure, diet, intervention, sex, timepoint_label | R2 |
| PRJNA784939 | Distinct fecal metagenomic signatures associated with pre-malignant colorectal adenomas | 1,942 | 971 | 971 | collection_date, location_region | R3 |
| PRJNA993675 | Discovery of disease-adapted bacterial lineages in inflammatory bowel diseases | 1,920 | 960 | 960 | collection_date, location_site | R3 |
| PRJNA804384 | Inflammatory bowel disease patients undergoing biological therapy | 1,678 | 423 | 432 | bmi, collection_date, smoking_status, timepoint_label | R2 |
| PRJNA1045701 | Sample size estimations based on human microbiome temporal stability over six months: a shallow shot | 1,060 | 212 | 212 | country, health_condition, health_condition_detail, location_region, location_site | R3, R4 |
| PRJNA1221567 | Viral Microbiome Dataset of Children Post-Allogeneic Hematopoietic Cell Transplantation | 937 | 343 | 343 | health_condition, health_condition_detail, location_site | R4 |
| PRJNA588514 | viral metagenome Metagenome | 930 | 930 | 930 | location_region | R4 |
| PRJNA1157208 | Lactiplantibacillus plantarum for the Prevention of GI aGVHD. A Report from the Childrens Oncology G | 859 | 859 | 859 | collection_date | R3 |
| PRJEB23292 | Dysbiosis, including decreased gut microbial richness (MGR) and composition modifications, associate | 813 | 271 | 271 | antibiotic_exposure, location_locality, location_site | R3 |
| PRJNA1390888 | Immune-microbiome coordination defines interferon setpoints in healthy humans [CITE-seq and WMS] | 801 | 267 | 267 | antibiotic_exposure, health_condition_detail, location_site | R3 |
| PRJNA1277853 | PediCAP metagenomics and metaserotyping | 784 | 682 | 682 | antibiotic_exposure, health_condition, health_condition_detail | R4 |
| PRJEB39661 | Changes in the microbiota across life: the existence of a core of microbial taxa and decoupling taxa | 742 | 304 | 304 | age_at_collection_days, lifestyle, sex | R2 |
| PRJNA1246224 | MASLD-A multi-omic study of microbiome and metabolic dysfunction-associated steatotic liver disease | 713 | 713 | 713 | sex | R3 |
| PRJEB64861 | Impact of dietary interventions on pre-diabetic oral and gut microbiome, metabolites and cytokines | 702 | 702 | 706 | intervention | R2 |