Home › Contribute
Contribute
472 projects are missing basic sample information — age, country, health condition or subject. If you know where it is (you are an author, or the paper has a supplementary table), you can fill the gap in about two minutes.
- 1Find the project
Search the list below by accession, title word or author.
- 2Click “Share metadata”
A short GitHub form opens with the project already filled in (free GitHub account).
- 3Fill in the form
- what you are sharing
- a link — or drag the file in
- which column holds the sample IDs
- tick the CC-BY box, then submit
We check every submission and add the values in the next release; each value then links back to your issue as its evidence. A good table has one row per sample and a column with run (SRR/ERR…) or BioSample (SAMN/SAMEA…) accessions, for example:
| Run | age_years | sex | condition |
|---|---|---|---|
| SRR1234567 | 34 | female | ulcerative colitis |
| SRR1234568 | 41 | male | healthy |
Something else wrong on a page? Use Flag an issue on that study page. Submitted contributions: open issues.
Projects that need metadata
| Project | Samples | Missing | Paper | |
|---|---|---|---|---|
| PRJNA416160 The Environmental Determinants of Diabetes in the Young (TEDDY) Parent Study | 8,747 | age · country · health condition | PMID 39856391 | Share metadata |
| PRJNA400115 TEDDY Microbiome | 12,266 | age · health condition | PMID 35729161 | Share metadata |
| PRJEB75462 PREDICT 3 US21 | 11,797 | age · health condition | PMID 39558133 | Share metadata |
| PRJEB11419 American Gut Project | 7,353 | health condition · subject | PMID 33005310 | Share metadata |
| PRJEB108612 MOMmy-Microbiome_Epigenome_Neurodevelopment | 5,328 | age · health condition | PMID 41676450 | Share metadata |
| PRJNA1468137 Maternal influences on infant gut microbiome and health | 4,749 | age · health condition | PMID 42587158 | Share metadata |
| PRJEB75465 PREDICT 3 UK23ART | 2,245 | age · health condition · subject | — | Share metadata |
| PRJEB98467 Whole shotgun metagenomic sequencing for 1,679 individuals (2,075 samples) from the TwinsUK cohort. Supporting data for: Pope et al, Faecal | 2,071 | age · health condition · subject | PMID 42625955 | Share metadata |
| PRJNA838575 CHILD Infant Stool Raw sequence reads | 2,934 | health condition · subject | PMID 37644001 | Share metadata |
| PRJNA999635 Gut Microbiome of isolated villages in rural Honduras | 1,889 | age · health condition · subject | PMID 38968070 | Share metadata |
| PRJEB106892 Chain_Ncc_Metagenomes_Release | 1,851 | age · country · health condition | — | Share metadata |
| PRJEB115010 NCRAD ADRC Samples - Aug 2022, Aug 2023 (Native American samples removed) | 1,792 | country · health condition · subject | — | Share metadata |
| PRJNA1257550 Role of gut microbiota in eczema development | 1,737 | age · health condition · subject | — | Share metadata |
| PRJNA1357304 Shotgun metagenomic sequencing of stool microbiomes relating to "Characterising the gut phageome and its links with host metabolism in the g | 2,472 | age · health condition | — | Share metadata |
| PRJEB110772 Gut microbiota associates with frailty in older women | 2,398 | health condition · subject | PMID 42420265 | Share metadata |
| PRJNA1049511 Gestational diabetes mellitus (GDM) impacts the maternal or infant microbiome trajectory | 1,566 | age · health condition · subject | PMID 38955186 | Share metadata |
| PRJNA48479 Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human microbiome samples: Production Phase | 2,096 | age · country | PMID 34083435 | Share metadata |
| PRJNA943687 Faecal metagenome of children with autism spectrum disorder and children that are neurotypical | 2,089 | health condition · subject | PMID 39468837 | Share metadata |
| PRJNA1259152 MOMMY_IBD | 1,252 | age · health condition · subject | — | Share metadata |
| PRJEB34871 Predicting antibiotic resistance in clinical infections caused by Enterobacterales from aggregated population-level taxonomy-adjusted AMR es | 1,197 | age · health condition · subject | PMID 34124634 | Share metadata |
| PRJDB38712 Exploring Population Differences in the Human Gut Microbiome: From Microbial Abundance to Genomic Variants (PRJCA041694) | 1,146 | age · health condition · subject | DOI | Share metadata |
| PRJNA1195215 Human gut metagenome | 1,710 | age · subject | PMID 41196050 | Share metadata |
| PRJNA1004982 Gut microbiome associates with phenotypic manifestations of post-acute COVID-19 syndrome | 1,676 | health condition · subject | PMID 38657605 | Share metadata |
| PRJEB28671 A_novel_nano_iron_supplement__IHAT__to_safely_combact_iron_deficiency_and_anemia | 1,605 | age · health condition | PMID 34972822 | Share metadata |
| PRJEB6921 Role_of_early_life_gut_microbiota_in_colonisation_resistance_development | 772 | age · country · health condition · subject | — | Share metadata |
| PRJNA1403004 Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study | 1,018 | age · health condition · subject | DOI | Share metadata |
| PRJNA784939 Distinct fecal metagenomic signatures associated with pre-malignant colorectal adenomas | 971 | age · country · health condition | PMID 37130517 | Share metadata |
| PRJNA588513 human gut metagenome Metagenome | 942 | age · health condition · subject | PMID 36177457 | Share metadata |
| PRJNA693850 Inference of association with the gut microbiota in stool, swab and mucosal tissue samples | 1,397 | age · subject | PMID 34290321 | Share metadata |
| PRJEB74042 METHOD | 931 | age · health condition · subject | PMID 38714898 | Share metadata |
| PRJEB63570 Klebsiella_transmission_and_immunity_on_Chatinkha_nursery__Neo_TRACK_ | 928 | age · health condition · subject | DOI | Share metadata |
| PRJDB41738 Cross-sectional associations of lifestyle-linked microbial metabolites with metabolic syndrome and vascular health: a secondary analysis of | 1,342 | age · health condition | PMID 41432724 | Share metadata |
| PRJNA361402 human gut metagenome Metagenome | 873 | country · health condition · subject | PMID 36681701 | Share metadata |
| PRJNA758252 Clinical and genetic correlates of the gut microbiome and relation to cardiometabolic risk | 1,271 | health condition · subject | PMID 34915914 | Share metadata |
| PRJNA1077400 Gut microbiome of healthy Japanese | 1,268 | age · subject | — | Share metadata |
| PRJNA1445561 System-level gut microbial functional dysregulation in treatment-naive chronic constipation and its reshaping by prune intervention | 1,248 | country · health condition | — | Share metadata |
| PRJNA1060349 Weaning accelerates and transforms within-host adaptation in the infant gut microbiome | 1,197 | age · health condition | PMID 40175737 | Share metadata |
| PRJNA1305379 Fecal immunochemical tests from population-based colorectal cancer screening programs support prospective microbiome cohorts | 1,164 | health condition · subject | PMID 42286232 | Share metadata |
| PRJNA1140720 Modelling human microbiome transmission in a nursery setting | 1,163 | age · health condition | PMID 41565819 | Share metadata |
| PRJNA1086048 Metagenomic analysis of faecal microbiome as a tool for targeted non-invasive biomarkers for inflammatory bowel disease | 1,154 | age · health condition | PMID 39367251 | Share metadata |
| PRJEB115008 U19 - POINTER U.S. Study to Protect Brain Health through Lifestyle Intervention to Reduce Risk | 768 | age · health condition · subject | — | Share metadata |
| PRJEB110648 Gut Virome Profiling in Ulcerative Colitis and Crohn's Disease | 1,124 | age · subject | — | Share metadata |
| PRJNA1450325 Metagenomes of fermented foods and gut microbiome from non Western populations | 1,124 | health condition · subject | — | Share metadata |
| PRJNA1445880 Infant gut microbiome samples Gastrointestinal Microbiome and Allergic Proctocolitis cohort | 740 | age · health condition · subject | PMID 42010622 | Share metadata |
| PRJNA1450681 Metagenomic stool profiling - Church Lab | 534 | age · country · health condition · subject | — | Share metadata |
| PRJNA296814 New Hampshire Birth Cohort Study microbiome: marker gene and shotgun metagenomic sequencing | 1,063 | health condition · subject | PMID 29973274 | Share metadata |
| PRJNA1504428 Gut microbiomes in children with complicated severe acute malnutrition during hospitalisation and long-term follow-up | 685 | age · health condition · subject | DOI | Share metadata |
| PRJEB32731 Whole shotgun metagenomic sequencing for 1,004 individuals belonging to the TwinsUK cohort. Supporting data for: Visconti et al, Interplay b | 1,004 | age · health condition | PMID 31582752 | Share metadata |
| PRJNA698223 TD Cusco travelers study | 993 | country · health condition | PMID 36470885 | Share metadata |
| PRJNA1169537 Multi-biome analysis of Cron's disease and ulcerative colitis patients | 654 | age · country · health condition | PMID 39604394 ● | Share metadata |
| PRJNA1031773 Impacts of COVID-19 Pandemic on Early Life Gut Microbiome | 624 | age · health condition · subject | PMID 41411654 | Share metadata |
| PRJEB112735 Investigating infant gut microbial composition (1 month and 10 years) | 932 | health condition · subject | — | Share metadata |
| PRJEB98069 Distinct Microbial and Resistome Signatures Differentiate Healthy and Inflamed Ileal Pouches in Ulcerative Colitis Patients | 605 | age · health condition · subject | — | Share metadata |
| PRJNA1197998 Gut Microbiome in Patients with Microscopic Colitis | 903 | health condition · subject | PMID 40410138 | Share metadata |
| PRJEB37249 Statin therapy is associated with lower prevalence of gut microbiota dysbiosis | 888 | age · subject | PMID 33208748 | Share metadata |
| PRJEB105208 Exposure to pesticide residues impacts human gut microbiome – a biomonitoring study across Europe and Argentina | 591 | age · health condition · subject | — | Share metadata |
| PRJNA1164832 Mind Body Study: a sub-study on psychosocial factors and microbiomes of nurses in the Nurse’s Health Study II | 818 | country · health condition | PMID 42332773 ● | Share metadata |
| PRJEB50555 Targeted suppression of human IBD-associated gut microbiota commensals for treatment of intestinal inflammation | 537 | country · health condition · subject | PMID 39458395 | Share metadata |
| PRJEB112862 Investigating infant gut e.coli isolates (1 week, 1 month, 1 year) | 773 | health condition · subject | — | Share metadata |
| PRJEB100868 PREVENT 1: Gut microbiota development and health in early life | 744 | health condition · subject | — | Share metadata |
| PRJNA1113165 Misame3 gut metagenomic | 736 | age · health condition | PMID 40102379 | Share metadata |
| PRJNA1139229 JCM-16021 in diarrhea-predominant irritable bowel syndrome: efficacy and gut microbiota interactions in a double-blinded randomized placebo- | 723 | age · subject | PMID 40639240 | Share metadata |
| PRJEB58441 Hominid host-microbiome co-adaptive response on a leash | 481 | age · health condition · subject | PMID 40164980 | Share metadata |
| PRJNA1058700 gut microbiota | 475 | age · country · health condition | — | Share metadata |
| PRJNA1277853 PediCAP metagenomics and metaserotyping | 682 | age · subject | PMID 42168578 | Share metadata |
| PRJEB81106 Simultaneous metagenome-informed metaproteomics of the human gut microbiome, host and dietary exposome uncover functional interactomes in he | 450 | age · health condition · subject | PMID 39837331 | Share metadata |
| PRJNA1110178 Metagenomics of rib fracture cases and controls | 662 | age · health condition | PMID 39286492 | Share metadata |
| PRJEB46943 Deep sequencing of faecal DNA viromes from 647 healthy Danish infants | 655 | health condition · subject | PMID 37037943 | Share metadata |
| PRJNA1023304 Microbial landscape of primary and metastatic brain tumors | 655 | age · health condition | PMID 41238915 | Share metadata |
| PRJNA1045584 Impact of SARS-CoV-2 in stool sample from women living with HIV and HIV-negative women and their infants. | 655 | age · health condition | PMID 39185682 | Share metadata |
| PRJNA1356862 Geographic spillover of antimicrobial resistance from mass distribution of azithromycin | 630 | health condition · subject | PMID 41611691 | Share metadata |
| PRJEB81697 Metagenomics of the gut microbiome in the Holbaek cohort | 619 | age · health condition | — | Share metadata |
| PRJEB52938 Longitudinal stool metagenomics from preterm infants within the first month after birth | 614 | age · health condition | — | Share metadata |
| PRJNA1457641 OH-MicroDynamics | 402 | age · health condition · subject | DOI | Share metadata |
| PRJNA1403442 POMMS Study | 396 | country · health condition · subject | PMID 42454489 | Share metadata |
| PRJNA926022 Effect of Natural Products on the Intestinal Microbial | 393 | age · health condition · subject | — | Share metadata |
| PRJNA1181778 The Immune Microbiome Product Against COVID infecTion (IMPACT) study | 560 | age · subject | PMID 40851072 | Share metadata |
| PRJNA557323 Human gut metagenomes from Hong Kong populations | 556 | age · health condition | PMID 32051205 | Share metadata |
| PRJNA1219367 MEtagenomic Modelling of cOgnitive ImpaiRment | 358 | age · country · subject | DOI | Share metadata |
| PRJNA1046438 Profiling the gut microbiota throughout human lifespan | 519 | health condition · subject | PMID 41700653 | Share metadata |
| PRJNA1356541 Metagenomic strain tracking among children in urban and rural communities in low- and middle-income countries. | 511 | age · health condition | DOI | Share metadata |
| PRJEB61646 Microbiome interactions in development of T2D (MB-MeT2D) | 332 | age · health condition · subject | — | Share metadata |
| PRJDB20360 JACCRO GC-18 | 490 | age · health condition | PMID 41963512 | Share metadata |
| PRJNA1273620 Maternal-Prenatal Signature Underlying Offspring Atopic Dermatitis Susceptibility | 325 | age · health condition · subject | PMID 41998770 | Share metadata |
| PRJEB14847 International Human Microbiome Standards | 323 | age · country · health condition | PMID 31502536 | Share metadata |
| PRJNA1348896 2025-10-24_Duan_Optimizing-Methods-for-Virome | 323 | age · health condition · subject | PMID 42227741 | Share metadata |
| PRJNA945504 Diagnosis of Crohn's Disease and Ulcerative Colitis Using the Microbiome | 482 | age · subject | PMID 37951857 | Share metadata |
| PRJNA1126668 Bacterial strain-sharing across human, animal, and the environment in Nairobi | 321 | age · health condition · subject | PMID 40312516 | Share metadata |
| PRJNA1477909 Characterization of Gut Microbiota Signatures linked to Methotrexate Response in Rheumatoid and Psoriatic Arthritis | 312 | age · health condition · subject | — | Share metadata |
| PRJNA1303200 Gut and Oral Metagenomics Prior to HIV-1 Infection | 463 | health condition · subject | PMID 41266305 | Share metadata |
| PRJEB58436 Obesity, and not cardiometabolic health status, drives altered gut microbiome functions in the metabolically unhealthy | 452 | health condition · subject | PMID 37680093 | Share metadata |
| PRJNA1337442 Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasopharynx: A Cluster-Randomized Trial | 450 | age · health condition | PMID 41845058 | Share metadata |
| PRJNA995807 A synbiotic preparation (SIM01) for post-acute COVID-19 syndrome: a randomised, double-blind, placebo-controlled trial (RECOVERY trial) | 450 | age · subject | PMID 38071990 | Share metadata |
| PRJEB50977 A large-sale meta-analysis of C. difficile prevalence across age, geography, health and disease. | 448 | age · health condition | DOI ● | Share metadata |
| PRJEB74553 Metagenomics of Parkinson's Disease | 290 | age · health condition · subject | PMID 39192744 | Share metadata |
| PRJNA400628 Escherichia coli Genome sequencing and assembly | 422 | age · health condition | PMID 35255937 | Share metadata |
| PRJNA1425773 CAROTENOIDS MODULATE EX VIVO FERMENTATION OF INULIN USING IBS AND OVERWEIGHT ADULT GUT MICROBIOTA | 407 | health condition · subject | PMID 42271199 | Share metadata |
| PRJNA606075 Metagenome sequencing of fecal specimens from the patients before and after the administration of study drugs of RBX2660 and placebo | 407 | country · subject | PMID 32862830 | Share metadata |
| PRJNA1380750 Fecal samples collected from healthy human male adults for a dietary intervention study. Samples contain host (Homo sapiens) genomic materia | 399 | health condition · subject | — | Share metadata |
| PRJEB5224 An integrated catalog of reference genes in the human gut microbiome | 260 | age · health condition · subject | PMID 24997786 | Share metadata |
| PRJNA1502892 Associations between antibiotic exposure intensity, intestinal microbiome perturbations, and outcomes in premature neonates with bacteremia | 390 | health condition · subject | PMID 40490486 | Share metadata |
| PRJNA530339 Shotgun Metagenomics of 361 post-menopause women reveals gut microbiome change along with the bone loss | 385 | health condition · subject | PMID 36824343 | Share metadata |
| PRJEB115009 MICROBIOTA-Brain Axis in Alzheimers Disease: MIND Diet-Induced Effects | 384 | health condition · subject | — | Share metadata |
| PRJNA1308273 ST131 gut metagenomics and Escherichia coli whole genomes | 255 | age · health condition · subject | PMID 42680742 | Share metadata |
| PRJNA1377943 Dissecting the gut microbiome in multiplex autism spectrum disorder families | 380 | health condition · subject | PMID 41748585 | Share metadata |
| PRJNA1221063 Project of gut microbiota analysis based on the Healthy Lifestyle Promotion Cohort in China | 370 | health condition · subject | — | Share metadata |
| PRJEB110894 Preterm Neonatal Stool Metagenomes+ | 365 | health condition · subject | — | Share metadata |
| PRJEB49334 Dynamics in the gut microbiomes of subjects colonized by carbapenemase-producing Enterobacteriaceae (longitudinal data) | 361 | country · health condition | PMID 36109646 | Share metadata |
| PRJNA1232955 Homo sapiens Raw sequence reads | 180 | age · country · health condition · subject | — | Share metadata |
| PRJNA1274946 Siblings are Reservoirs for Microbial Metabolic Processes that Influence Allergy Development | 353 | age · health condition | PMID 40879391 | Share metadata |
| PRJDB43571 Changes in the gut microbiota of the drinking population after Fucha tea intervention (PRJCA034544) | 176 | age · country · health condition · subject | — | Share metadata |
| PRJNA1247984 Shotgun Metagenomic Sequencing of Fecal Samples from Arkhangelsk, Northwestern Russia | 350 | age · health condition | PMID 41309890 | Share metadata |
| PRJNA976726 Cholera patient metagenomes | 344 | age · subject | PMID 41597730 | Share metadata |
| PRJNA1105631 Microbiome features of bronchopulmonary dysplasia | 228 | age · health condition · subject | — | Share metadata |
| PRJEB58879 BLOOD | 226 | age · health condition · subject | — | Share metadata |
| PRJEB45443 Different development status of gut microbiome link to the dysbiosis of gut ecosystem in early childhood with atopic dermatitis | 338 | age · subject | PMID 35485368 | Share metadata |
| PRJNA546227 Metagenomic Study of Gastrointestinal Tract Microbial Community Change During Long-Term Acute Care | 335 | age · health condition | — | Share metadata |
| PRJNA1088546 CATCH study shotgun | 332 | country · subject | PMID 39017661 | Share metadata |
| PRJNA1156595 Metagenomics: a new frontier for routine pathology testing of gastrointestinal pathogens | 330 | age · subject | PMID 39827146 | Share metadata |
| PRJNA824824 An ex vivo screening of community response to synthetic and reference glycans | 324 | age · health condition | — | Share metadata |
| PRJNA800831 Shotgun metagenome sequencing of samples from Conambo in the Ecuadorian Amazon | 322 | age · health condition | — | Share metadata |
| PRJNA1226940 Restoration of Intestinal Secondary Bile Acid Synthesis: A Potential Approach to Improve Pancreatic Beta-Cell Function in Type 1 Diabetes | 213 | age · health condition · subject | PMID 40347938 | Share metadata |
| PRJNA1490646 Gut Microbiome of Pregnancy and Infancy | 319 | age · health condition | PMID 42684889 | Share metadata |
| PRJEB24041 Selective maternal seeding and environment shape the human gut microbiome | 212 | age · health condition · subject | PMID 29496731 | Share metadata |
| PRJNA1251707 Metagenomes for rational identification of live biotherapeutics for the treatment of inflammatory bowel disease | 312 | age · subject | DOI | Share metadata |
| PRJEB46664 Gut microbiota profile and plasma metabolome and lipidome in type 1 diabetes without and with stratification by albuminuria | 206 | age · health condition · subject | PMID 36531462 | Share metadata |
| PRJEB23010 RLBUHT_Cdiff | 205 | age · country · health condition | — | Share metadata |
| PRJNA1188789 fecal sample Raw sequence reads | 198 | age · health condition · subject | PMID 41526899 | Share metadata |
| PRJNA1074135 Long-term effects of ciprofloxacin treatment on the gastrointestinal and oropharyngeal microbiome are more pronounced after longer antibioti | 295 | age · health condition | PMID 38936492 | Share metadata |
| PRJEB63351 Neuroblastoma is associated with alterations in gut microbiome composition subsequent to maternal seeding | 288 | age · subject | PMID 38104504 | Share metadata |
| PRJEB60573 Auxotrophies in the human gut microbiome | 190 | age · health condition · subject | PMID 38740021 | Share metadata |
| PRJDB41627 GLP-1 RAs or dietary fiber interventions study (PRJCA050830) | 142 | age · country · health condition · subject | DOI | Share metadata |
| PRJEB26357 ShotGun BACTERIAL AND FUNCTIONAL DETERMINANTS OF OUTCOME IN FAECAL MICROBIOTA TRANSPLANTATION FOR ACTIVE ULCERATIVE COLITIS | 284 | country · subject | PMID 32298656 | Share metadata |
| PRJNA532888 Pro-inflammatory and autoimmunogenic gut microbiome in systemic lupus erythematosus | 284 | age · subject | PMID 41318497 | Share metadata |
| PRJNA1241852 dietary intervention trial in patients with melanoma | 282 | age · subject | — | Share metadata |
| PRJEB47445 Exploring semi-quantitative metagenomics studies using Oxford Nanopore sequencing : a computational and experimental protocol | 139 | age · country · health condition · subject | PMID 34680891 | Share metadata |
| PRJEB29052 The effect of probiotic supplementation on the gut microbiota and antibiotic resistome development in preterm infants | 184 | age · health condition · subject | PMID 30505830 | Share metadata |
| PRJNA1312123 Development of the preterm infant gut and gastric residuals microbiome | 272 | age · health condition | PMID 41203618 | Share metadata |
| PRJNA843963 CAGED: CAMPYLOBACTER GENOMICS AND ENVIRONMENTAL ENTERIC DYSFUNCTION | 177 | age · health condition · subject | PMID 41185061 | Share metadata |
| PRJDB28938 Multi-omics reveal host-microbiota interactions in primary biliary cholangitis (PRJCA018532) | 263 | age · country | PMID 39305900 ● | Share metadata |
| PRJNA1290379 Infant stool | 261 | health condition · subject | PMID 41593042 | Share metadata |
| PRJEB63183 Interactions Between Bifidobacterium and Bacteroides and Human Milk Oligosaccharides and Their Associations with Infant Cognition | 170 | age · health condition · subject | PMID 37457984 | Share metadata |
| PRJNA885289 Characteristics of the gut microbiome in esports players compared with those in physical education students and professional athletes | 169 | age · health condition · subject | PMID 36726816 | Share metadata |
| PRJDB16260 metagenomic data from human fecal samples | 250 | age · health condition | PMID 39089862 | Share metadata |
| PRJNA1099236 Gut Microbiome and Pregnancy Complications | 250 | health condition · subject | — | Share metadata |
| PRJNA1479378 Gut microbiota and graft versus host disease | 245 | age · health condition | PMID 42495148 | Share metadata |
| PRJEB74035 Long-term fasting remodels gut microbial metabolism and host metabolism | 241 | age · health condition | DOI | Share metadata |
| PRJEB60097 Microbiome in health and disease | 240 | age · subject | — | Share metadata |
| PRJEB68363 Characterization of the gut bacteriome and virome in LADA | 239 | health condition · subject | PMID 38594375 | Share metadata |
| PRJNA1374062 Healthy controls from the TB-DAR cohort | 239 | age · subject | — | Share metadata |
| PRJEB25008 The_human_gut_microbiome_in_alcoholic_liver_disease | 159 | age · country · health condition | PMID 35050163 | Share metadata |
| PRJDB41212 Gut Microbiota Dysbiosis and Metabolic Perturbations of Bile/Glyceric Acids in Major Depressive Disorder with IBS Comorbidity (PRJCA043176) | 119 | age · country · health condition · subject | PMID 41055380 | Share metadata |
| PRJEB110410 The impact of dietary fibres on gut microbiome of young children: insights from ex vivo experiments and an observational cohort | 156 | age · health condition · subject | DOI | Share metadata |
| PRJEB123560 A method to selectively enrich for microeukaryotic cells in human faecal samples by depleting bacterial cells prior to metagenomic sequencin | 156 | age · health condition · subject | DOI | Share metadata |
| PRJEB60692 The impact of exercise-induced muscle damage, inflammation and oxidative stress on the intestinal microbiota in athletes. | 232 | country · health condition | PMID 38381714 | Share metadata |
| PRJNA552463 IBD virome Raw sequence reads | 115 | age · country · health condition · subject | PMID 32841606 | Share metadata |
| PRJNA648796 human gut metagenomics Metagenome | 229 | age · subject | PMID 39606796 | Share metadata |
| PRJDB41006 Human gut microbiome (PRJCA023753) | 228 | age · country | — | Share metadata |
| PRJNA691382 human gut metagenome with illumina sequencing | 150 | age · health condition · subject | — | Share metadata |
| PRJNA902178 Effects of Lacticaseibacillus paracasei PC-01 on gut microbes in people with allergies | 150 | age · health condition · subject | PMID 36532514 | Share metadata |
| PRJNA982563 Daily occupational exposure in swine farm alters human skin microbiota and antibiotic resistome | 224 | age · health condition | PMID 38868515 | Share metadata |
| PRJNA1422633 Interpretable machine learning reveals pathoadaptive strain-level functional reprogramming of gut commensals in patients with diabetes and c | 149 | age · health condition · subject | — | Share metadata |
| PRJEB79832 Impact_of_the_host_microbiome_on_the_treatment_response_of_soil_transmitted_helminths | 223 | age · health condition | — | Share metadata |
| PRJNA1195614 blood, upper respiratory tract, and gut metagenome | 148 | age · health condition · subject | PMID 42586263 ● | Share metadata |
| PRJNA769968 Probiotic consumption relieved Parkinson's disease via modulating the gut microbiota and neuroactive compounds | 222 | age · health condition | PMID 35610236 | Share metadata |
| PRJNA1469445 WGS metagenomics data of stool samples of 109 patients and control group participants from 3 hospitals of Central Region of Russia | 218 | age · health condition | — | Share metadata |
| PRJEB58787 Reproducible chemostat cultures to minimize eukaryotic viruses from fecal transplant material | 108 | age · country · health condition · subject | PMID 39104406 | Share metadata |
| PRJNA877821 Shotgun sequencing of fecal samples from patients colonized with multidrug resistant Enterobacteriaceae | 216 | age · health condition | PMID 36153315 | Share metadata |
| PRJNA1454700 human fecal metagenome | 142 | age · health condition · subject | — | Share metadata |
| PRJNA1390327 Gut metagenome | 212 | health condition · subject | — | Share metadata |
| PRJEB96399 Symptom Generation in Functional Bowel Disorders (SYMBOWL) | 211 | age · subject | — | Share metadata |
| PRJDB13214 The characteristics of gut microbiome in COVID-19 patients | 208 | age · subject | PMID 38930440 ● | Share metadata |
| PRJEB44907 Effectiveness and safety of Bifidobacterium and berberine in human hyperglycemia and their regulatory effect on the gut microbiota: A multi- | 208 | age · health condition | PMID 34365978 | Share metadata |
| PRJNA689961 Gut microbiome sequencing | 208 | age · country | PMID 34687739 | Share metadata |
| PRJNA1162635 A Metagenome-Assembled Genome Inventory for Children (MAGIC) | 136 | age · health condition · subject | PMID 39591974 | Share metadata |
| PRJEB72524 Gut microbiome samples from a cohort of CRC patients in Brno, Czech Republic. | 203 | country · subject | PMID 40461820 | Share metadata |
| PRJNA1112983 Kawasaki diseases patients metagenome Raw sequence reads | 202 | age · subject | PMID 39104524 | Share metadata |
| PRJNA1068646 Gut virome in HIV infection | 201 | health condition · subject | PMID 39420423 | Share metadata |
| PRJNA439151 GUT FUNGAL METAGENOME Metagenome | 134 | age · health condition · subject | — | Share metadata |
| PRJNA763023 Dysbiosis of human gut microbiome in young-onset colorectal cancer | 200 | age · subject | PMID 34799562 | Share metadata |
| PRJDB36916 Gut metagenomic data for sepsis patients (PRJCA040720) | 132 | age · country · subject | — | Share metadata |
| PRJNA1274175 A two-phase population trial with composite polyphenols intervention | 198 | health condition · subject | PMID 41932890 | Share metadata |
| PRJNA1372070 Hepatocellular Carcinoma Cohort Metagenomics | 197 | age · subject | PMID 42099457 | Share metadata |
| PRJEB40256 Genomic insights into adaptations of TMA-utilizing methanogens to diverse habitats including the human gut | 130 | age · health condition · subject | PMID 33563787 | Share metadata |
| PRJNA787665 Human gut microbiota survey of the Hong Kong population | 195 | health condition · subject | — | Share metadata |
| PRJNA1189133 Comparison of biochemical, microbial and mucosal mRNA expression in bile acid diarrhoea and irritable bowel syndrome with diarrhoea | 194 | age · subject | PMID 35580964 | Share metadata |
| PRJNA1314234 Human and mouse gut microbiome sequencing datasets related to immune checkpoint inhibitor therapy and immune-related adverse events. | 194 | age · health condition | PMID 42083059 | Share metadata |
| PRJNA908301 Gastrointestinal symptoms of long COVID relate to the ectopic colonization of specific bacteria that move between the upper and lower alimen | 128 | country · health condition · subject | PMID 37468867 ● | Share metadata |
| PRJNA1194741 Shotgun metagenomic sequencing data of vegan and omnivorous Czech subjects | 191 | age · health condition | PMID 41340567 | Share metadata |
| PRJNA1368374 Metagenomes from mother-infant fecal samples | 191 | age · health condition | — | Share metadata |
| PRJNA240307 C.diff FMT | 127 | age · health condition · subject | PMID 35762793 | Share metadata |
| PRJNA1148078 Human fecal samples Metagenome | 190 | age · health condition | PMID 39441994 | Share metadata |
| PRJEB115011 The effect of the Gut Microbiome on the brain response to DHA supplementation PREVENTE4-Microbiome | 189 | health condition · subject | — | Share metadata |
| PRJNA1177813 2FL age specific bifidobacterium effect | 126 | age · health condition · subject | PMID 39796584 | Share metadata |
| PRJNA1522603 Pathogen co-infection in bronchoalveolar lavage fluid of post-renal transplant pneumonia patients and its correlations with patient physiolo | 188 | age · subject | — | Share metadata |
| PRJEB72212 Age-related dynamics of methanogens in the human gut: implication of longevity and health | 185 | age · health condition | PMID 40181255 | Share metadata |
| PRJNA629464 Microbial signature of multiple physical and psychological symptoms in a 135 days oceangoing voyage Metagenome | 123 | country · health condition · subject | PMID 35019672 | Share metadata |
| PRJEB40200 Alterations in gut microbiome in cirrhosis as assessed by quantitative metagenomics. Relationship with acute-on-chronic liver failure and mo | 182 | age · subject | PMID 32941879 ● | Share metadata |
| PRJDB29360 Identification of a 10-species microbial signature of inflammatory bowel disease by machine learning (PRJCA020224) | 181 | age · health condition | PMID 40658318 | Share metadata |
| PRJEB42363 Impact of azithromycin mass drug administration on the antibiotic resistant gut microbiome: a randomized, controlled trial | 181 | age · health condition | PMID 37191543 | Share metadata |
| PRJEB113311 Human Resistome - Hybrid capture and sequencing | 120 | age · health condition · subject | PMID 42294626 | Share metadata |
| PRJNA1247491 Molecular interactions between botanical extracts and the human gut microbiota | 90 | age · country · health condition · subject | PMID 40740338 | Share metadata |
| PRJNA663786 Unveiling the bifidobacterial resistance mechanism against amoxicillin-clavulanic acid: genetic and ecological insights | 120 | age · country · health condition | PMID 33483308 ● | Share metadata |
| PRJNA765566 metagenome of human oral and gut microbiome | 180 | age · health condition | PMID 36475759 | Share metadata |
| PRJNA1005702 Observing and Understanding antibiotic-induced Reduction in Short-chain Fatty Acids and time dependent administration of BB-12 proBIOTIC (OU | 179 | age · health condition | — | Share metadata |
| PRJEB50568 Pediatric gut resistome | 119 | age · health condition · subject | PMID 36202201 | Share metadata |
| PRJDB36775 Metagenome for CKD (HS study) (PRJCA040203) | 118 | age · country · subject | PMID 40555791 | Share metadata |
| PRJEB66493 A Randomised Placebo-Controlled Trial of Faecal Microbiota Transplantation in Patients with Chronic Pouchitis – MicroPouch study | 177 | health condition · subject | PMID 40413728 | Share metadata |
| PRJNA1394613 Intestinal flora structure mediated regulatory T cells in the effect and mechanism of postmenopausal osteoporosis by Metagenomic Sequencing | 118 | age · health condition · subject | — | Share metadata |
| PRJEB102491 Shotgun sequencing of 91 infants from the ALADDIN birth cohort | 176 | health condition · subject | — | Share metadata |
| PRJNA1282887 Multi-Site Microbiome Profiling Reveals Gastrointestinal-Pulmonary Microbial Associations in Multiple Primary Lung Cancer | 176 | age · subject | — | Share metadata |
| PRJNA417283 human metagenome Raw sequence reads | 86 | age · country · health condition · subject | PMID 29988506 | Share metadata |
| PRJNA778267 Gut microbiota and SARS-CoV-2 | 172 | age · subject | PMID 36207022 | Share metadata |
| PRJEB7772 An analysis of the composition of viruses and bacteria in stool samples from IBD patients and healthy controls. | 171 | age · health condition | PMID 25619688 | Share metadata |
| PRJNA1005411 Viral metagenomic sequencing raw data of Chinese human gut | 169 | age · health condition | — | Share metadata |
| PRJNA1006089 Whole metagenomics sequecing raw data of Chinese human feces | 169 | age · health condition | — | Share metadata |
| PRJDB18316 Association between polygenic risk score for prostate cancer and the gut microbiota | 166 | age · subject | PMID 41660426 | Share metadata |
| PRJNA1060633 Raw sequence reads of fecal metagenomics in HUA population | 166 | health condition · subject | PMID 38412863 | Share metadata |
| PRJNA1372133 Metagenomic sequencing of fecal and beef samples Raw sequence reads | 162 | age · health condition | — | Share metadata |
| PRJNA539933 Gut microbiome of humans and wild and captive chimpanzees and gorillas | 81 | age · country · health condition · subject | PMID 32203121 | Share metadata |
| PRJNA642723 Gut Microbiome and Metabolome in Atopic Eczema Infants | 162 | age · health condition | PMID 33023370 | Share metadata |
| PRJNA725047 16s vs shallowshotgun | 162 | age · health condition | PMID 34394027 | Share metadata |
| PRJNA1475796 Human fecal metagenomic | 80 | age · country · health condition · subject | — | Share metadata |
| PRJNA1452619 Microbiome and growth faltering in Indian Infants | 159 | age · health condition | — | Share metadata |
| PRJNA1423906 Crohn's Disease Microbiome Atlas | 158 | age · subject | — | Share metadata |
| PRJNA967723 Whole metagenome sequencing of human oral, vaginal, and rectal microbiome samples | 79 | age · country · health condition · subject | DOI | Share metadata |
| PRJNA1262070 Arivale Stool Metagenomes | 156 | age · health condition | PMID 41712536 | Share metadata |
| PRJNA906107 Characterizing microbiome dynamics among maternal and donor breastmilk and infants | 156 | age · health condition | — | Share metadata |
| PRJEB97759 Multi-kingdom gut microbiome for gastric cancer | 154 | health condition · subject | — | Share metadata |
| PRJNA1127293 fecal microbial composition in Parkinson's disease | 154 | age · subject | PMID 39065200 | Share metadata |
| PRJNA788972 Interactions between human gut microbiome dynamics and sub-optimal health symptoms during seafaring expeditions | 154 | health condition · subject | PMID 35019672 | Share metadata |
| PRJNA1501268 Gut microbiota changes following inulin and a placebo in older adults and healthy controls | 153 | age · health condition | — | Share metadata |
| PRJNA1169661 Infamilk | 152 | age · health condition | PMID 40312036 | Share metadata |
| PRJNA678472 Long-term persistence of crAss-like phage crAss001 in Bacteroides intestinalis cultures in vitro and in vivo | 101 | age · health condition · subject | PMID 34407825 | Share metadata |
| PRJNA1092365 Raw data used for stduying interaction between bile acid and gut microbiome | 151 | age · subject | — | Share metadata |
| PRJEB101714 strepB17 | 100 | age · health condition · subject | DOI | Share metadata |
| PRJEB41786 Healthy danish metagenomic samples | 150 | health condition · subject | PMID 36604748 | Share metadata |
| PRJNA1053635 Metagenomic sequencing of T2D patients | 150 | health condition · subject | PMID 39278950 ● | Share metadata |
| PRJNA1195696 Homo sapiens Raw sequence reads | 75 | age · country · health condition · subject | — | Share metadata |
| PRJNA1429435 Shotgun metagenomics samples of Camu camu trial. | 150 | age · health condition | DOI | Share metadata |
| PRJNA644725 Metagenomic Sequencing of Stool Samples in Bangladeshi Infants: Virome Association with Poliovirus Shedding After Oral Poliovirus Vaccinatio | 150 | age · health condition | PMID 32958861 | Share metadata |
| PRJNA797846 Intestinal mucosa microbiome (100) and transcriptome (23) | 100 | age · health condition · subject | PMID 35694307 | Share metadata |
| PRJNA893901 MEDIC Challenge test sequencing data | 100 | age · health condition · subject | PMID 37072468 | Share metadata |
| PRJEB11852 Prenatal arsenic exposure and intestinal microbiota in Bangladeshi children | 149 | health condition · subject | PMID 29211769 | Share metadata |
| PRJEB40628 gut metagenome of HC, IBS, DEP and COMO | 149 | health condition · subject | PMID 33194817 | Share metadata |
| PRJEB48605 Long-term effects of diet on human gut microbiota composition employing shotgun metagenomics data analysis | 149 | age · health condition | PMID 37891427 | Share metadata |
| PRJNA1214590 Tractidigestivibacter scatoligenes Metagenome | 149 | age · health condition | PMID 41128819 | Share metadata |
| PRJNA1247145 Intestinal permeability of stem cell transplant patients | 149 | age · subject | PMID 37083597 | Share metadata |
| PRJNA514108 human gut metagenome Metagenome | 99 | age · health condition · subject | PMID 34307189 ● | Share metadata |
| PRJDB40001 Human gut metagenome from the elderly population in Ginowan City, Okinawa | 148 | health condition · subject | — | Share metadata |
| PRJNA1227883 Metagenomes from mother-infant fecal and breastmilk samples of the MAMI cohort Metagenome | 146 | health condition · subject | PMID 42679805 | Share metadata |
| PRJDB18646 The Virome analysis in Japanese healthy cohort and patients with HIV or SARS-CoV-2 infection | 144 | age · health condition | PMID 39656008 | Share metadata |
| PRJEB34992 Diet and gut microbiome interactions of relevance for symptoms in irritable bowel syndrome | 144 | health condition · subject | PMID 33771219 | Share metadata |
| PRJEB45904 Gut-Brain axis in people at differential genetic risk for developing Alzheimer's disease | 96 | age · health condition · subject | — | Share metadata |
| PRJEB75510 Evaluation of DNA extraction kits for long-read shotgun metagenomics using Oxford Nanopore sequencing for rapid taxonomic and antimicrobial | 96 | age · health condition · subject | PMID 39604411 | Share metadata |
| PRJNA1320713 Sickle cell disease patient gut microbiome study | 144 | age · subject | DOI | Share metadata |
| PRJNA1445946 Within-sample comparison of DNA-, RNA-, and total nucleic acid metagenomic sequencing workflows in human clinical specimens | 96 | age · health condition · subject | PMID 42734361 | Share metadata |
| PRJNA684454 Diversity of Fecal Microbiome and Resistome of Food-producing Animals and Humans in Brazil | 96 | age · health condition · subject | PMID 35752638 | Share metadata |
| PRJNA706606 Impact of Water Chlorination of Children's Gut Microbiomes in Bangladesh | 95 | age · health condition · subject | — | Share metadata |
| PRJNA944553 Metagenomic samples of cat and human feces Metagenome | 95 | age · health condition · subject | PMID 42259841 | Share metadata |
| PRJNA874475 Systemic translocation of bacteriophages as a part of human intestine microbiome | 142 | age · health condition | — | Share metadata |
| PRJDB29523 Dynamical alterations of brain function and gut microbiome in weight loss (PRJCA020783) | 140 | country · subject | PMID 38173792 | Share metadata |
| PRJEB67456 IBD gut virome | 139 | age · subject | PMID 39026313 | Share metadata |
| PRJNA406958 Microbiota of RCDI patients subjected to FMT by capsules or colonoscopy | 92 | age · country · subject | PMID 37110500 | Share metadata |
| PRJNA1067625 Gut microbiome of children in Haiti | 137 | health condition · subject | PMID 38977240 | Share metadata |
| PRJNA668357 A metagenomic study of the gut microbiota following bariatric surgery | 135 | age · subject | PMID 40286292 | Share metadata |
| PRJNA843681 gastric mucosa of FD patients | 135 | age · subject | PMID 38029178 | Share metadata |
| PRJEB50505 Effect of a dairy-based product on sleep quality, stress, and gut-microbiota analyzed using shotgun metagenomics | 134 | health condition · subject | PMID 34199006 | Share metadata |
| PRJNA446038 viral metagenome Raw sequence reads | 134 | age · health condition | PMID 30526683 | Share metadata |
| PRJNA766048 Red Raspberry Polyphenols and Fructo-oligosaccharide on Gut Microbiome | 134 | health condition · subject | PMID 35421233 | Share metadata |
| PRJNA1079906 Fecal microbiome sequencing of colorectal cancer | 133 | age · subject | PMID 40433987 | Share metadata |
| PRJNA453965 Studies of human gut metagenome Metagenome in breast cancer patients. | 133 | age · subject | PMID 39315152 | Share metadata |
| PRJNA528960 Metagenomic sequencing of stool Metagenome | 133 | age · health condition | PMID 33596852 | Share metadata |
| PRJDB35189 Family Cohort Study Reveals Significant Fluctuations in Functional Microbiota in CRC (PRJCA038885) | 88 | age · country · health condition | — | Share metadata |
| PRJNA726052 Effects of drinking water chlorination on childrens intestinal flora and resistomes in Dhaka, Bangladesh: a cluster-randomized controlled tr | 132 | age · health condition | — | Share metadata |
| PRJNA904924 Stool microbiome profiling of celiac disease patients on gluten-free diet | 132 | age · health condition | PMID 36751856 | Share metadata |
| PRJDB41743 Human gut microbiome in Jiangsu and Guangxi (PRJCA050978) | 131 | health condition · subject | — | Share metadata |
| PRJEB76664 Metagenomic analysis of the gut microbiome of healthy participants in the GALAXY project | 131 | age · subject | PMID 41935631 | Share metadata |
| PRJNA845806 Trial of Diet in Gestational Diabetes Mellitus: Metabolic Consequences to Mother and Offspring (CHOICE) | 131 | age · health condition | PMID 35966074 | Share metadata |
| PRJNA1086381 Homo sapiens Raw sequence reads | 87 | country · health condition · subject | — | Share metadata |
| PRJNA1472498 Microbiome of Bolivian Arsenic-exposed populations | 130 | age · subject | — | Share metadata |
| PRJNA633381 IgA deficiency microbiota | 130 | age · subject | PMID 33662387 | Share metadata |
| PRJNA1156897 Metagenomic Profiling of Microbiomes from Patients with Autoimmune Diseases | 129 | age · health condition | PMID 41974712 | Share metadata |
| PRJNA686821 Shotgun metagenomics data from human stool microorganism Raw sequence reads | 128 | age · country | PMID 41350579 | Share metadata |
| PRJNA991269 Comparative characterization of the infant gut microbiome and their maternal lineage by a multi-omics approach | 128 | age · health condition | PMID 38589361 | Share metadata |
| PRJNA1099775 Doxycycline post-exposure prophylaxis for sexually transmitted infections impacts the gut antimicrobial resistome | 127 | health condition · subject | PMID 39363100 | Share metadata |
| PRJEB30611 The fecal microbiota has already altered in normoglycemic individuals who go on to have type 2 diabetes | 126 | health condition · subject | PMID 33680988 | Share metadata |
| PRJNA706060 human gut metagenome Metagenome | 126 | age · subject | PMID 34307189 ● | Share metadata |
| PRJNA1285275 Gut Microbiome in Type 1 diabetes | 125 | age · health condition | PMID 41930333 | Share metadata |
| PRJNA834762 LMIC human infant stool whole-genome shotgun metagenomic sequencing | 83 | age · health condition · subject | — | Share metadata |
| PRJEB72525 Gut microbiome samples from a cohort of CRC patients in two hospitals in Prague and Plzen, Czech Republic. | 124 | country · subject | PMID 40461820 | Share metadata |
| PRJNA1258282 The effect of bismuth subsalicylate on the gut microbiome | 124 | health condition · subject | DOI | Share metadata |
| PRJNA231909 A prospective, longitudinal analysis of the developing gut microbiome in infants en route to type 1 diabetes | 124 | health condition · subject | PMID 30661755 | Share metadata |
| PRJNA1295840 Gut Microbiome and Virome Dysbiosis in Pediatric Idiopathic Nephrotic Syndrome: A Multi-Kingdom Disruption of Microbial Crosstalk | 122 | country · subject | — | Share metadata |
| PRJEB23662 A novel affordable reagent for room temperature storage and transport of fecal samples for metagenomic analyses | 121 | age · subject | PMID 29482661 | Share metadata |
| PRJEB76399 Effect of large-scale population-based dietary change to vegetarianism on antimicrobial resistance and bacterial composition of sewage in Th | 121 | age · health condition | PMID 40389018 | Share metadata |
| PRJDA72415 Comprehensive Detection of Possible Pathogens Associated with Kawasaki Disease | 80 | age · country · health condition | PMID 23936105 | Share metadata |
| PRJNA1484372 Homo sapiens Metagenome | 60 | age · country · health condition · subject | — | Share metadata |
| PRJNA641593 Characterizing the gut DNA and RNA viromes in a population of Chinese residents and visiting Pakistanis | 120 | age · health condition | PMID 33959381 | Share metadata |
| PRJNA681337 Cranberry project | 120 | age · health condition | — | Share metadata |
| PRJNA721545 Gut metagenome and diet | 120 | country · health condition | PMID 41340567 ● | Share metadata |
| PRJNA727667 Human lung cancer metagenomic raw sequence reads | 120 | age · health condition | — | Share metadata |
| PRJNA942341 Growth phase estimation for abundant bacterial populations sampled longitudinally from human stool metagenomes | 80 | age · health condition · subject | PMID 37709733 ● | Share metadata |
| PRJNA1044231 Human metagenomic sequencing | 119 | age · subject | PMID 40969426 | Share metadata |
| PRJNA873083 Pulmonary arterial hypertension gut microbiome | 119 | age · subject | PMID 36343281 | Share metadata |
| PRJNA739170 FMT in recurrent C. Difficile and or IBD (inflammatory bowel diseases) | 118 | country · health condition | PMID 36618438 | Share metadata |
| PRJEB108281 chronic functional constipation | 78 | age · health condition · subject | PMID 41947790 | Share metadata |
| PRJNA890567 gut metagenome for chronic kidney disease | 78 | age · health condition · subject | PMID 40525868 | Share metadata |
| PRJNA1056888 Faecal microbiota transplantation for sleep disturbance in post-acute COVID-19 syndrome | 116 | health condition · subject | PMID 38908733 | Share metadata |
| PRJEB58106 Study of the microbiome in relation to cognitive traits | 115 | age · health condition | — | Share metadata |
| PRJEB27799 Prediction of the intestinal resistome by a novel 3D-based method | 114 | age · health condition | PMID 30478291 ● | Share metadata |
| PRJEB44233 Association between age and the human intestinal microbiome | 76 | country · health condition · subject | PMID 34662347 | Share metadata |
| PRJNA1356335 The associations of gut microbiota with insomnia | 114 | health condition · subject | PMID 42624113 | Share metadata |
| PRJNA870588 Longitudinal metagenomic of preterm infants with cholestasis | 114 | health condition · subject | PMID 36843227 | Share metadata |
| PRJNA1427647 Gut Microbiome Signatures Forecast Clinical Response to Methotrexate in Treatment-Naive Early Rheumatoid Arthritis Patients | 113 | health condition · subject | — | Share metadata |
| PRJEB32834 Microbiome_based_prediction_of_vaccine_response_in_elderly_patients | 74 | age · country · health condition | — | Share metadata |
| PRJDB38865 Efficacy and mechanism of Bifidobacterium animalis subsp. lactis BL-99 in promoting age-related intestinal peristalsis in older adults (PRJC | 110 | country · health condition | — | Share metadata |
| PRJEB101387 The Antimicrobial Gut Resistome of the Wayampi reveals a shared background of antibiotic and metal resistance genes with industrialized popu | 110 | health condition · subject | PMID 41803907 | Share metadata |
| PRJNA328899 Mongolian Metagenome | 110 | age · subject | PMID 34083435 | Share metadata |
| PRJNA715668 human gut metagenome Targeted Locus (Loci) | 110 | country · health condition | — | Share metadata |
| PRJNA1153735 gut metagenome | 73 | age · health condition · subject | — | Share metadata |
| PRJNA1251023 DFI C. diff Metagenomics Profiling | 73 | age · health condition · subject | — | Share metadata |
| PRJNA1189516 MicroboeMom-3m-motherstool | 109 | health condition · subject | — | Share metadata |
| PRJEB37062 Quantifying gut microbiome variation’s effect on interpersonal differences in drug metabolism | 72 | age · health condition · subject | DOI | Share metadata |
| PRJNA1230889 Human milk oligosaccharide mediates mutualism between Escherichia coli and Bifidobacterium bifidum | 108 | health condition · subject | PMID 42020426 | Share metadata |
| PRJEB101960 Gut microbiome of toddlers up to 36 months of age | 107 | health condition · subject | — | Share metadata |
| PRJNA1437835 gut metagenome | 107 | age · health condition | — | Share metadata |
| PRJNA564397 Metagenomics Reveals Impact of Geography, Antibiotics and Acute Diarrhoeal Disease on the Gut Microbiome of Central Indian Populations | 107 | health condition · subject | PMID 32459982 | Share metadata |
| PRJNA678426 Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes. | 106 | age · health condition | PMID 39086996 | Share metadata |
| PRJEB52748 Gut microbiome function and composition in infants from rural Kenya and association with human milk oligosaccharides | 105 | age · health condition | PMID 36794816 | Share metadata |
| PRJNA1080077 Metagenomics squencing of microbial diversity on human gut | 104 | health condition · subject | — | Share metadata |
| PRJNA1121964 fecal metagenomes of irritable bowel syndrome patients | 103 | age · subject | — | Share metadata |
| PRJNA1226748 Homo sapiens Raw sequence reads | 102 | health condition · subject | PMID 41246284 | Share metadata |
| PRJNA748262 Fecal metagenomes of C. difficile colonized patients | 102 | age · subject | PMID 35083969 | Share metadata |
| PRJEB44119 Gut colonisation by extended-spectrum β-lactamase-producing Escherichia coli and its association with the gut microbiome and metabolome in D | 101 | health condition · subject | PMID 35659906 ● | Share metadata |
| PRJEB41539 Alterations of gut microbiome, metabolome and lipidome in Takayasu arteritis | 67 | age · health condition · subject | PMID 36054683 | Share metadata |
| PRJNA1094595 SSLR | 67 | age · health condition · subject | PMID 39449043 | Share metadata |
| PRJNA1165922 Modulation of xylo-oligosaccharide on gut microbiota in pregnant women with high risk factors for gestational diabetes mellitus | 100 | country · health condition | — | Share metadata |
| PRJEB82904 Gut microbiota in CKD | 99 | health condition · subject | — | Share metadata |
| PRJNA715947 Gut microbiota and tuberculosis | 99 | age · health condition | PMID 34908436 | Share metadata |
| PRJDB39729 shotgun metagenomic sequences and metabolome datasets from Japanese fecal samples | 98 | health condition · subject | — | Share metadata |
| PRJDB39757 Shotgun metagenomic sequences from human gut virus-like particles | 98 | health condition · subject | — | Share metadata |
| PRJEB45653 Preliminary assessment of Microbiota Anaerobic Collection Medium (MACM) to maintain organism viability | 98 | age · subject | PMID 35061732 | Share metadata |
| PRJEB57404 Proton pump inhibitors enhance the risk of Carbapenem-resistant Enterobacteriaceae by facilitating the transfer antibiotic resistant genes a | 98 | age · health condition | PMID 38634770 | Share metadata |
| PRJNA1092797 human fecal metagenome | 98 | health condition · subject | — | Share metadata |
| PRJNA1050903 Human gut metagenome Raw sequence reads | 65 | age · country · subject | PMID 40207279 | Share metadata |
| PRJNA786015 Rural environment reduces allergic inflammation by modulating the gut microbiota | 65 | country · health condition · subject | PMID 36193874 | Share metadata |
| PRJNA892575 Human Gut Metagenome and Metatranscriptome Raw Sequence Reads - Methodological Comparison | 65 | age · health condition · subject | — | Share metadata |
| PRJNA986854 stool sample of paired mother-infant for 16S rRNA sequencing analysis | 65 | age · country · health condition | PMID 40467587 | Share metadata |
| PRJNA598452 Elderly Gut Microbiota FMM | 97 | health condition · subject | PMID 32867153 | Share metadata |
| PRJEB106095 Hi-C and VLP sequencing data of SPMP cohort | 64 | country · health condition · subject | — | Share metadata |
| PRJEB38483 TwinUK cohort | 96 | age · health condition | PMID 42491347 ● | Share metadata |
| PRJEB43044 Changes in human gut microbiome during the first wave of COVID-19 pandemic in comparison with pre-pandemic travel-related changes | 96 | age · health condition | PMID 33949663 | Share metadata |
| PRJEB13830 Investigation_of_changes_in_gastrointestinal_homeostasis_and_it_relationship_to_multi_organ_dysfunction_in_critically_ill_children | 95 | health condition · subject | PMID 35729169 | Share metadata |
| PRJEB81819 microbiota in cirrhosis | 95 | health condition · subject | PMID 40255076 | Share metadata |
| PRJNA1225188 Precision Glycans Enhance Gamma-Aminobutyric Acid Production in Human Gut Model | 63 | age · country · subject | — | Share metadata |
| PRJNA648487 Factors associated with the microbiome in moderate-late preterm babies - the DIAMOND trial - Shotgun Metagenomic data | 94 | health condition · subject | PMID 33732655 | Share metadata |
| PRJNA1163373 Jahansouz IMT Trial | 93 | age · health condition | — | Share metadata |
| PRJNA1456328 Axillary and Gut Microbiota Characteristics in Axillary Bromhidrosis Patients and the Effect of Microwave Therapy: A Case-Control Study | 62 | age · health condition · subject | PMID 42164666 | Share metadata |
| PRJNA445968 Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease | 92 | health condition · subject | PMID 28883399 | Share metadata |
| PRJEB33013 Human gut microbiome | 61 | age · health condition · subject | PMID 36504822 | Share metadata |
| PRJNA1358001 human gut Metagenome | 61 | age · health condition · subject | — | Share metadata |
| PRJEB25227 RNAssist_Microbiota_study | 60 | age · country · health condition | — | Share metadata |
| PRJEB35615 Associations between the intestinal microbiome and the complement system in age-related macular degeneration | 90 | age · subject | PMID 32922859 ● | Share metadata |
| PRJEB87798 Short- and long-term development of gut microbiota in children after liver transplantation | 90 | health condition · subject | PMID 40576662 | Share metadata |
| PRJEB93866 Rye and weat degradation by GM | 60 | age · health condition · subject | PMID 41551588 | Share metadata |
| PRJNA1209332 Gut Microbiota in Bullous Pemphigoid | 90 | age · subject | — | Share metadata |
| PRJNA1189459 MicrobeMon threemonth infant | 89 | age · health condition | — | Share metadata |
| PRJNA1245671 Gut metagenome of Multiple Sclerosis patients | 89 | age · subject | PMID 42700718 | Share metadata |
| PRJDB9649 Fecal microbiota transplantation alleviates diabetes peripheral neuropathy | 88 | age · health condition | PMID 37451270 | Share metadata |
| PRJEB57911 Infant metagemone data | 58 | age · health condition · subject | — | Share metadata |
| PRJEB73590 WGS and Metagenomic samples from Ethiopia, Tanzania, Mozambique and Nigeria, collected as part of the FOCAL - Foodborne disease epidemiology | 87 | age · subject | PMID 37111504 | Share metadata |
| PRJNA1078869 Dysglycemia and the Microbiome in Cystic Fibrosis | 87 | age · health condition | PMID 41056240 | Share metadata |
| PRJNA472785 Athlete Gut Microbiome Metagenomic Sequencing | 87 | health condition · subject | PMID 31235964 | Share metadata |
| PRJNA526861 Metagenomics of the mucosal and stool microbiome in Lynch syndrome | 87 | health condition · subject | PMID 32240601 | Share metadata |
| PRJEB102751 Metagenomic sequencing data of gut microbiota from patients with functional gastrointestinal disorders (FGIDs) | 86 | age · subject | — | Share metadata |
| PRJEB62463 Synergy and oxygen adaptation for development of next generation probiotics | 86 | age · health condition | PMID 37532933 | Share metadata |
| PRJNA718445 Metagenomes from DNA isolated from oropharyngeal swabs, stool samples, rectal swabs and vaginal secretions. Raw sequence reads | 86 | age · health condition | PMID 34254823 | Share metadata |
| PRJDB39575 Human gut microbiome (PRJCA048332) | 57 | age · country · subject | — | Share metadata |
| PRJNA407341 viral metagenome Metagenome | 84 | country · health condition | PMID 29631623 | Share metadata |
| PRJNA554501 Navy voyage feces metagenome Metagenome | 84 | health condition · subject | PMID 32079472 | Share metadata |
| PRJNA715908 Healthy Indian gut metagenome sequence data | 84 | age · subject | PMID 34620880 ● | Share metadata |
| PRJEB65440 Gut microbiota dysbiosis in Cirrhosis and hepatic encephalopathy | 83 | health condition · subject | PMID 42587419 | Share metadata |
| PRJNA353598 viral metagenome Metagenome | 83 | age · country | PMID 28539351 | Share metadata |
| PRJNA1257948 The Human Gut Microbiome and Its Metabolic Pathways Dynamics Before and During HIV Antiretroviral Therapy | 82 | health condition · subject | PMID 40522093 | Share metadata |
| PRJNA995034 Diet Soda Human gut microbiome | 82 | age · health condition | — | Share metadata |
| PRJNA1157583 metagenome Raw sequence reads | 81 | health condition · subject | PMID 40409349 | Share metadata |
| PRJNA429990 human gut metagenome Raw sequence reads | 81 | age · subject | PMID 34822777 ● | Share metadata |
| PRJNA1064103 Metagenomics of Colonoscopic Rinsates: Investigating Microbial Patterns in Inflammatory Bowel Disease | 80 | age · subject | — | Share metadata |
| PRJNA1129893 fecal sample | 80 | age · health condition | — | Share metadata |
| PRJNA1317556 Microbiome and metabolome characteristics of the small intestine in patients with ACLF | 80 | age · subject | — | Share metadata |
| PRJNA418044 Uncontacted Amerindians fecal virome | 80 | health condition · subject | PMID 33959147 ● | Share metadata |
| PRJNA433459 gut metagenome Metagenome | 80 | age · subject | PMID 42168845 | Share metadata |
| PRJNA1074773 NIST RM 8376 Use Cases | 53 | age · health condition · subject | PMID 40062856 | Share metadata |
| PRJNA1107280 Gut metagenome | 52 | age · health condition · subject | — | Share metadata |
| PRJNA738684 Branched-chain sugar of pectin | 52 | age · health condition · subject | — | Share metadata |
| PRJEB103000 Functional changes in the gut microbiome of Multiple Sclerosis patients come along with an increased Vancomycin-resistant gene profile | 77 | health condition · subject | — | Share metadata |
| PRJEB79382 Stool microbiota stability | 77 | age · health condition | PMID 39932403 | Share metadata |
| PRJDB33192 Infands gut virome (PRJCA031650) | 51 | age · country · subject | PMID 40202375 | Share metadata |
| PRJNA1045967 metagenome Raw sequence reads | 51 | age · health condition · subject | — | Share metadata |
| PRJNA1390426 Homo sapiens Raw sequence reads | 51 | age · country · health condition | — | Share metadata |
| PRJNA1457283 Homo sapiens Genome sequencing and assembly | 51 | country · health condition · subject | — | Share metadata |
| PRJDB7378 Generic sample from human gut metagenome | 50 | age · health condition · subject | PMID 39278950 | Share metadata |
| PRJNA1081608 Risk factor assessment and microbiome analysis in peritoneal dialysis-related peritonitis reveal etiological characteristics | 75 | age · subject | PMID 39611142 | Share metadata |
| PRJNA1115089 Exploring the Relationship Between the Gut Microbiome, Physical Fitness Levels and Metabolic Responses to Exercise (EXOMIC) | 50 | age · health condition · subject | — | Share metadata |
| PRJNA1259758 human fecal metagenome Raw sequence reads | 75 | age · health condition | — | Share metadata |
| PRJNA1436979 Shotgun metagenomic profiling of fecal microbiota in Normal, MPEI, and SPEI subjects | 50 | age · health condition · subject | — | Share metadata |
| PRJNA478949 Clostridium Difficile Matched 16S/ITS/Metagenomics/Metatranscriptomics Dataset | 75 | age · health condition | PMID 31462412 | Share metadata |
| PRJNA647065 The intestinal flora of Immunoglobulin A Nephropathy (IgAN) patients versus healthy controls | 50 | country · health condition · subject | — | Share metadata |
| PRJNA1469299 Geographic Heterogeneity of Gut Microbiome Disturbances in Adolescent Depression: A Metagenomic Analysis | 72 | health condition · subject | — | Share metadata |
| PRJEB102170 Gut microbiome of toddlers up to 12 months of age | 71 | age · subject | PMID 42769680 | Share metadata |
| PRJNA1167935 Stool shotgun metagenomic profiles CRC patients and healthy controls - TU cohort | 71 | age · subject | PMID 40461820 | Share metadata |
| PRJNA770101 the transmission of probio-m9 from mother to infant | 71 | age · health condition | — | Share metadata |
| PRJNA1056769 Fecal of bronchiectasis Metagenome | 70 | country · subject | — | Share metadata |
| PRJNA1064467 Clinically used broad-spectrum antibiotics compromise inflammatory monocyte-dependent antibacterial defense in the lung | 70 | age · subject | PMID 38555356 | Share metadata |
| PRJNA940499 Quantifying bias introduced by sample collection in relative and absolute microbiome measurements | 70 | age · health condition | PMID 39481381 | Share metadata |
| PRJNA991155 Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples | 70 | age · health condition | PMID 37828152 | Share metadata |
| PRJEB81237 Metabolites derived from the gut microbiota alleviate colorectal cancer | 69 | age · subject | — | Share metadata |
| PRJNA961175 Fecal microbiota profiling in patients with immune-related colitis | 69 | age · health condition | PMID 38108398 | Share metadata |
| PRJNA1065277 Delivery mode and maternal gestational diabetes are important factors in shaping the neonatal initial gut microbiota | 68 | age · health condition | PMID 39268487 | Share metadata |
| PRJNA1121295 FEDEX Study Fecal Metagenomes | 68 | age · subject | PMID 38964511 ● | Share metadata |
| PRJEB120968 Gut microbiome profiles associated with simple liver steatosis in MASLD: Swedish cohort. | 66 | health condition · subject | — | Share metadata |
| PRJNA1044118 Human oral and gut microbiome in first episode psychosis patients | 66 | country · subject | PMID 38061464 ● | Share metadata |
| PRJNA1457655 Functional Signatures of the Gut Microbiome in Middle-Aged Regular Runners: Insights from a Metagenomic Study | 66 | health condition · subject | PMID 42500599 | Share metadata |
| PRJNA763908 Intestinal flora sequencing of Chinese infants | 66 | age · subject | — | Share metadata |
| PRJEB14038 Evaluating the Potential of using Next-Generation Sequencing for Direct Clinical Diagnostics of Faecal Samples from Patients with Diarrhoea | 65 | age · subject | PMID 28285331 | Share metadata |
| PRJEB47543 Flagellin diversity | 64 | age · health condition | — | Share metadata |
| PRJNA1110638 OB fecal sample Metagenome | 63 | age · health condition | PMID 40600142 | Share metadata |
| PRJNA491626 Gut virome of Cameroonians living in close proximity with bats | 63 | age · subject | PMID 34083435 | Share metadata |
| PRJNA1209391 Microbial Influences on Immune Modulation and Colorectal Cancer Progression Through Combined Transcriptomic and Microbiomic Analysis | 62 | age · health condition | — | Share metadata |
| PRJNA1399671 Pharmabiotics, Phocaeicola dorei, ameliorates cholestatic liver fibrosis by alleviating macrophage efferocytosis of neutrophils | 62 | health condition · subject | PMID 42143054 | Share metadata |
| PRJNA498332 Comparison of faecal virome composition in cystic fibrosis patients vs. a healthy cohort | 62 | country · subject | PMID 34083435 | Share metadata |
| PRJNA914785 gut microbiota of Children NAFLD Raw sequence reads | 62 | health condition · subject | PMID 38189294 | Share metadata |
| PRJDB37437 Integrated Metagenomic and Metabolomic Profiling Reveals Gut Microbiota Dysbiosis and Metabolic Dysregulation in IgA Nephropathy and Membran | 61 | age · health condition | PMID 40740937 | Share metadata |
| PRJEB32411 Gut metagenomic signature in hypertension: a cross-sectional study | 61 | age · health condition | PMID 32296109 | Share metadata |
| PRJNA1056258 The Role of Akkermansia muciniphila in Luminal Cholesterol Metabolism | 61 | health condition · subject | — | Share metadata |
| PRJNA1154919 16s sequencing | 61 | health condition · subject | PMID 39383869 | Share metadata |
| PRJNA1273656 Arsenic Metabolism and Gut Microbiome Responses Following a Single Meal of Seaweeds in Humans | 61 | age · health condition | — | Share metadata |
| PRJNA1321953 Gut microbiome in patient with depression and recent suicide attempt | 61 | age · subject | PMID 40896414 | Share metadata |
| PRJDB15798 Novel sampling method optimized for fecal microbiota and metabolite preservation during storage | 60 | age · health condition | — | Share metadata |
| PRJNA1042648 Metabolic tumor burden assessed by [18F] FDG - PET CT scan as a predictive biomarker for immune checkpoint blockers in advanced NSCLC and it | 60 | age · subject | — | Share metadata |
| PRJNA1183595 Gut microbiome of individuals with Non-celiac gluten wheat sensitivity Raw sequence reads | 60 | country · health condition | — | Share metadata |
| PRJNA1232352 Intestinal flora in functional constipation | 60 | age · health condition | PMID 40469730 | Share metadata |
| PRJNA1348713 Short bowel syndrome and gut microbiota | 60 | age · health condition | PMID 42678156 | Share metadata |
| PRJNA1516100 Fecal metagenomic sequencing from human subjects | 60 | health condition · subject | — | Share metadata |
| PRJEB25514 A cross-sectional study of compositional and functional profiles of gut microbiota in Sardinian centenarians | 59 | health condition · subject | PMID 31289141 | Share metadata |
| PRJNA1077752 Homo sapiens Raw sequence reads | 59 | health condition · subject | PMID 40629292 | Share metadata |
| PRJNA819232 Impact of Integrase Inhibitors on gut and oral microbiome | 59 | age · subject | PMID 35618952 | Share metadata |
| PRJNA730677 Genomic adaptations of Escherichia coli strains from patients with inflammatory bowel diseases | 58 | age · subject | PMID 35560165 | Share metadata |
| PRJNA877820 Metagenomics of gut microbiota | 58 | age · subject | PMID 36289225 | Share metadata |
| PRJNA881732 gut metagenome | 58 | age · subject | — | Share metadata |
| PRJEB84128 Gut microbiota signatures associated with advanced metastatic prostatic cancer treated with androgen receptor pathway inhibitor therapy | 57 | health condition · subject | DOI | Share metadata |
| PRJNA1008138 Fecal metagenomes from humans and mouse lemurs | 57 | age · health condition | PMID 39099658 | Share metadata |
| PRJNA1173329 Mechanistic Study of Head and Neck Squamous Cell Carcinoma Based on Microbiomics | 57 | age · country | PMID 42134193 | Share metadata |
| PRJNA1245618 The characteristics of tissue microbiota in different anatomical locations and different tissue types of the colorectum in patients with col | 57 | age · subject | PMID 40422085 | Share metadata |
| PRJNA1372073 Hepatocellular Carcinoma Cohort Metagenomics | 57 | age · subject | PMID 42099457 | Share metadata |
| PRJNA788943 IBS Metagenome | 56 | health condition · subject | — | Share metadata |
| PRJEB28687 U.S. immigration westernizes the human gut microbiome | 55 | health condition · subject | PMID 30388453 | Share metadata |
| PRJEB33794 Changes in Microbiota Profiles After Prolonged Frozen Storage of Stool Suspensions | 55 | age · subject | PMID 32185143 | Share metadata |
| PRJEB55713 Child gut microbiome | 55 | age · subject | PMID 36504822 | Share metadata |
| PRJNA1218764 Evaluation of shotgun metagenomics as a diagnostic tool for infectious gastroenteritis | 55 | age · health condition | PMID 40892803 | Share metadata |
| PRJNA1423645 Jejunal microbiome metagenomic sequencing of morbid obese patients | 55 | age · subject | — | Share metadata |
| PRJNA973824 Immunoregulatory role of gut microbiome and mycobiome in aging | 55 | health condition · subject | PMID 38246133 | Share metadata |
| PRJDB41236 gut microbiota of CSA_AKI (PRJCA044377) | 53 | age · country | — | Share metadata |
| PRJEB87348 VLP metagenome of Korean gut | 53 | age · health condition | PMID 40210629 | Share metadata |
| PRJDB29433 Nanopore-based metagenomic sequencing analysis of control subjects and patients with AD. (PRJCA020467) | 52 | age · country | PMID 39510074 ● | Share metadata |
| PRJNA1118222 longitudinal exploration of rectal swab metagenomes | 52 | age · health condition | PMID 40097931 | Share metadata |
| PRJDB38277 Characteristics of intestinal bacteria in long-lived elderly (PRJCA019954) | 51 | country · health condition | PMID 40732166 | Share metadata |
| PRJNA1164032 gut metagenome | 51 | health condition · subject | PMID 42285959 | Share metadata |
| PRJNA1308943 Metagenomic sequencing of stool from foodborne outbreaks for the Undetermined Outbreaks project (UnO) | 51 | age · subject | — | Share metadata |
| PRJNA1076911 Infant and maternal gut microbiomes | 50 | health condition · subject | PMID 38995243 | Share metadata |
| PRJNA666005 viral metagenome Metagenomic assembly | 50 | health condition · subject | PMID 35265642 | Share metadata |
● supplementary tables not accessible to us — these are the quickest wins.