Fecal metagenome of HIV-infected individuals, cross-sectional
This cross-sectional study analyzed 57 fecal metagenomic samples from individuals with HIV infection; sample location data were not available. machine-written summary
57 samples · 59 runs · Age unknown · 2026 · 11.69 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 57 sample values (collection date) |
| ✓ Abstract / description | 57 sample values (health condition) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 56 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 0 | 0% | ||||
| health_condition | 57 | 100% | 57 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 57 | 100% | 57 |
Archive description
Fecal metagenomic sequencing of HIV-infected individuals
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by opus_adjudicated with confidence 0.80. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- host study.description · “HIV-infected individuals”
- body site study.description · “Fecal metagenomic sequencing”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMD01712774 | collection_date | 2021-04-26 | R1 | 0.90 | biosample.attribute:collection_date | 2021-04-26 |
| SAMD01712774 | health_condition | other_infection | R4 | 0.50 | study.description | Fecal metagenomic sequencing of HIV-infected individuals |
Sequencing
59 runs over 57 samples · mean 11.82 Gbp per run (median 11.66 Gbp, total 697.64 Gbp; 59 runs with a base count) · layout PAIRED 59 · platform ILLUMINA 59 · models Illumina NovaSeq 6000 (59) · 95% of runs with a Sandpiper profile · first public 2026-06-02 – 2026-08-26
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, country, subject_id. Share metadata
Downloads
PRJDB39575.csv.gz (2.3 KB) · parquet (70.8 KB) — all 57 samples, every field with route and confidence · PRJDB39575_determinations.csv.gz (1.3 KB) — 114 evidence rows