Gut microbiome dysbiosis in rare blood disorders (UK)
Shotgun metagenomic sequencing of 226 gut samples collected in the United Kingdom in 2019 for a study of gut microbiome dysbiosis in rare blood disorders. machine-written summary
226 samples · 226 runs · GB · Age unknown · 2025 · 8.47 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 452 sample values (collection date, country) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 226 | 100% | 226 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 226 | 100% | 226 |
Archive description
.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by curator_audit with confidence 0.50. Assay shotgun_dna.
- host runs.scientific_name · “human gut metagenome (226)”
- host runs.library_strategy · “WGS (226)”
- body site runs.scientific_name · “human gut metagenome (226)”
- body site runs.library_strategy · “WGS (226)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA113937451 | collection_date | 2019 | R1 | 0.85 | biosample.attribute:collection_date | collection_date: 2019 |
| SAMEA113937451 | country | GB | R1 | 0.90 | sample.attr.geographic_location_country_and_or_sea | United Kingdom |
Sequencing
226 runs over 226 samples · mean 8.50 Gbp per run (median 8.47 Gbp, total 1,921.34 Gbp; 226 runs with a base count) · layout PAIRED 226 · platform ILLUMINA 226 · models Illumina NovaSeq 6000 (226) · 89% of runs with a Sandpiper profile · first public 2025-01-01
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, health_condition, subject_id. Share metadata
Downloads
PRJEB58879.csv.gz (5.8 KB) · parquet (76.8 KB) — all 226 samples, every field with route and confidence · PRJEB58879_determinations.csv.gz (2.4 KB) — 452 evidence rows