Arivale Stool Metagenomes: Diet Intervention, Washington, USA
156 stool metagenome samples from participants in Arivale, a precision wellness program in Washington, USA, collected as part of a diet intervention study. machine-written summary
156 samples · 156 runs · US · Age unknown · 2025 · 0.88 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 780 sample values (collection date, country, latitude, location region, longitude) |
| ✓ Abstract / description | 156 sample values (subject id) |
| ○ Full text | read; no usable statement or table · PMC12919772 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Controlled / prescribed diet or feeding regimen · population cardiometabolic_other · Arivale wellness program; diet/lifestyle cohort sampled for fiber intake modeling
“healthy diet and lifestyle intervention” — abstract:41712536 (study level; per-sample arms are in the intervention column below)
Genera, mean relative abundance over 43 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 156 | 100% | 156 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 156 | 100% | 156 | |||
| collection_date | 156 | 100% | 156 | |||
| detailed_location | 156 | 100% | ||||
| latitude | 156 | 100% | 156 | |||
| location_region | 156 | 100% | 156 | |||
| longitude | 156 | 100% | 156 |
- Metabolic modeling reveals determinants of prebiotic and probiotic treatment efficacy across multiple human intervention trials. 2026 PMID 41712536 PMC12919772 unsure
Archive description
Stool metagenomic sequencing data for 156 participants in Arivale, a former precision wellness company.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.72. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site study.title · “Arivale Stool Metagenomes”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN48446927 | collection_date | 2019-12-16 | R1 | 0.90 | biosample.attribute:collection_date | 2019-12-16 |
| SAMN48446927 | country | US | R1 | 0.90 | sample.attr.geographic_location | USA:Washington |
| SAMN48446927 | latitude | 47.6061 | R1 | 0.90 | biosample.attribute:latitude_and_longitude | 47.6061 N 122.3328 W |
| SAMN48446927 | location_region | Washington | R1 | 0.85 | biosample.attribute:geographic_location | USA:Washington |
| SAMN48446927 | longitude | -122.3328 | R1 | 0.90 | biosample.attribute:latitude_and_longitude | 47.6061 N 122.3328 W |
| SAMN48446927 | subject_id | SAMN48446927 | R4 | 0.60 | design.one_sample_per_subject:description | Stool metagenomic sequencing data for 156 participants in Arivale, a former precision wellness company. |
Sequencing
156 runs over 156 samples · mean 0.87 Gbp per run (median 0.88 Gbp, total 135.24 Gbp; 156 runs with a base count) · layout PAIRED 156 · platform ILLUMINA 156 · models Illumina NovaSeq 6000 (156) · 28% of runs with a Sandpiper profile · first public 2025-05-18
Authors (3)
Quinn-Bohmann N first · Carr AV · Gibbons SM last
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, health_condition. Share metadata
Downloads
PRJNA1262070.csv.gz (4.6 KB) · parquet (76.6 KB) — all 156 samples, every field with route and confidence · PRJNA1262070_determinations.csv.gz (5.9 KB) — 936 evidence rows