Human fecal metagenome in children and infants, Hong Kong
98 fecal metagenome samples from children and infants in Hong Kong; no health conditions, interventions, or study design details are specified in the available sources. machine-written summary
98 samples · 98 runs · HK · Child · 2024 · 7.46 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 389 sample values (age, collection date, country, sex) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 93 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 98 | 100% | ||||
| country | 98 | 100% | 98 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 98 | 100% | 98 | |||
| sex | 98 | 100% | 98 | |||
| age_at_collection_days | 95 | 97% | 95 |
Archive description
human fecal metagenome
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of child by sonnet_x2 with confidence 0.62. Assay shotgun_dna.
- host run.scientific_name · “human feces metagenome”
- body site study.title · “human fecal metagenome”
- life stage sample.attr.age · “6 (n=95/98)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN40634126 | age_at_collection_days | 1095.8 | R1 | 0.70 | sample.attr.age | 3 |
| SAMN40634126 | collection_date | 2017-12-03 | R1 | 0.90 | biosample.attribute:collection_date | 2017-12-03 |
| SAMN40634126 | country | HK | R1 | 0.90 | sample.attr.geo_loc_name | Hong Kong |
| SAMN40634126 | sex | male | R1 | 0.90 | sample.attr.sex | male |
Sequencing
98 runs over 98 samples · mean 11.13 Gbp per run (median 7.46 Gbp, total 1,090.66 Gbp; 98 runs with a base count) · layout PAIRED 98 · platform ILLUMINA 98 · models Illumina NovaSeq 6000 (98) · 95% of runs with a Sandpiper profile · first public 2024-04-03
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: health_condition, subject_id. Share metadata
Downloads
PRJNA1092797.csv.gz (3.6 KB) · parquet (73.8 KB) — all 98 samples, every field with route and confidence · PRJNA1092797_determinations.csv.gz (2.9 KB) — 389 evidence rows