Human gut metagenome from Beijing, China
150 samples of human gut metagenome collected in Beijing, China, sequenced using Illumina technology. No health condition, intervention, or detailed study design information is provided. machine-written summary
150 samples · 150 runs · CN · Age unknown · 2022 · 8.81 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 750 sample values (collection date, country, latitude, location locality, longitude) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 139 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 150 | 100% | 150 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 150 | 100% | 150 | |||
| detailed_location | 150 | 100% | ||||
| latitude | 150 | 100% | 150 | |||
| location_locality | 150 | 100% | 150 | |||
| longitude | 150 | 100% | 150 |
Archive description
human gut metagenome with illumina sequencing
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.65. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site study.title · “human gut metagenome with illumina sequencing”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN17291872 | collection_date | 2018 | R1 | 0.90 | biosample.attribute:collection_date | 2018 |
| SAMN17291872 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China: Beijing |
| SAMN17291872 | latitude | 39.5400 | R1 | 0.90 | biosample.attribute:lat_lon | 39.54 N 116.2 E |
| SAMN17291872 | location_locality | Beijing | R1 | 0.85 | biosample.attribute:geo_loc_name | China: Beijing |
| SAMN17291872 | longitude | 116.2000 | R1 | 0.90 | biosample.attribute:lat_lon | 39.54 N 116.2 E |
Sequencing
150 runs over 150 samples · mean 9.53 Gbp per run (median 8.81 Gbp, total 1,429.54 Gbp; 150 runs with a base count) · layout PAIRED 150 · platform ILLUMINA 150 · models HiSeq X Ten (150) · 93% of runs with a Sandpiper profile · first public 2022-03-03
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, health_condition, subject_id. Share metadata
Downloads
PRJNA691382.csv.gz (4.2 KB) · parquet (74.9 KB) — all 150 samples, every field with route and confidence · PRJNA691382_determinations.csv.gz (4.3 KB) — 750 evidence rows