Microbiome features of bronchopulmonary dysplasia, Munich
196 samples from Munich, Germany, examining microbiome profiles associated with bronchopulmonary dysplasia; age and study design not specified in the available records. machine-written summary
228 samples · 228 runs · DE · Infant / toddler · 2025 · 3.56 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 506 sample values (country, health condition, health condition detail, timepoint) |
| ○ Abstract / description | read; no usable statement |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 47 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 32 | 14% | ||||
| country | 228 | 100% | 228 | |||
| health_condition | 25 | 11% | 25 | |||
| subject_id | 0 | 0% | ||||
| timepoint_label | 228 | 100% | 228 | |||
| health_condition_detail | 25 | 11% | 25 |
Archive description
Identifying microbiome profiles in bronchopulmonary dysplasia
How this project entered the registry
Classified as human lower respiratory / gut / stool / blood / tissue / internal fluids shotgun DNA metagenome of infant / toddler by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage verdict include”
- body site study.title · “Microbiome features of bronchopulmonary dysplasia”
- body site study.description · “microbiome profiles in bronchopulmonary dysplasia”
- body site external_curation.infant_catalog · “infant triage verdict include (gut/stool scope)”
- body site run.scientific_name · “human blood metagenome”
- life stage external_curation.infant_catalog · “infant triage verdict include (0-3 y scope)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN41247673 | country | DE | R1 | 0.90 | biosample_attr | Germany: Munich |
| SAMN41247731 | country | DE | R1 | 0.90 | sample.attr.geo_loc_name | Germany: Munich |
| SAMN41247731 | health_condition | other_disease | R1 | 0.85 | biosample.attribute:BPD severity | BPD severity: Moderate/severe |
| SAMN41247731 | health_condition_detail | bronchopulmonary dysplasia, severity Moderate/severe | R1 | 0.85 | biosample.attribute:BPD severity | BPD severity: Moderate/severe |
| SAMN41247673 | timepoint_label | 0 | R1 | 0.80 | biosample_attr | 0 |
| SAMN41247731 | timepoint_label | day 4 | R1 | 0.85 | biosample.attribute:Day | Day: 4 |
Sequencing
228 runs over 228 samples · mean 3.92 Gbp per run (median 3.56 Gbp, total 894.11 Gbp; 228 runs with a base count) · layout PAIRED 228 · platform ILLUMINA 228 · models Illumina NovaSeq 6000 (228) · 92% of runs with a Sandpiper profile · first public 2025-10-23
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, health_condition, subject_id. Share metadata
Downloads
PRJNA1105631.csv.gz (6.8 KB) · parquet (79.2 KB) — all 228 samples, every field with route and confidence · PRJNA1105631_determinations.csv.gz (3.1 KB) — 506 evidence rows