Human gut microbiota study

gut microbiota

475 gut microbiota samples; no information given on location, health conditions, interventions, or study design beyond being categorized as "other." machine-written summary

475 samples · 475 runs · Age unknown · 2025 · 10.78 Gbp / sample

ENA BioProject Sample sheet Registry Download Flag an issue

Sources

✓Sequence archive 1,425–Abstract / description–Full text–Supplementary tables–External resources–User contribution–Human verified

Checked this project's papers and archive records yourself? Mark it human-verified.

what each source gave

✓ Sequence archive	1,425 sample values (collection date, subject id, timepoint)
– Abstract / description	no abstract or project description
– Full text	no open-access full text linked
– Supplementary tables	no supplementary tables available (or none open access)
– External resources	not covered by the external resources we ingest
– User contribution	nothing uploaded yet · share metadata
– Human verified	not yet checked by a person · I checked this project — verify it

Samples at a glance

Age

unknown475

Body site

primary475

Sequencing depth per sample · this project all projects

Sampling design and relatedness

longitudinal

97 of 97 people sampled more than once (475 samples; median 5, up to 5 per person) · follow-up median 2 mo (max 2 mo) · median interval between samples 11 d (time from collection dates).

Each row is one person (36 shown of 97); dots are samples at days since that person's first sample.

How longitudinal and relatedness information is derived

Community composition

No Sandpiper profile for this project's samples yet.

Field coverage

field	samples	coverage	R1
age_category	0	0%
country	0	0%
health_condition	0	0%
subject_id	475	100%	475
collection_date	475	100%	475
timepoint_label	475	100%	475

Details

Archive description

How this project entered the registry

Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.55. Assay shotgun_dna.

host run.host_tax_id · “9606”
body site run.scientific_name · “gut metagenome”

Evidence examples (one per field × route)

sample	field	value	route	conf.	source	quote
SAMN39186210	collection_date	2021-04-25	R1	0.90	biosample.attribute:collection_date	2021-04-25
SAMN39186210	subject_id	XGYM001	R1	0.85	biosample.attribute:isolation_source	isolation_source: XGYM001
SAMN39186210	timepoint_label	20210425	R1	0.70	sample.name_rule:alias	alias: XGYM00120210425A

Sequencing

475 runs over 475 samples · mean 10.76 Gbp per run (median 10.78 Gbp, total 5,108.96 Gbp; 475 runs with a base count) · layout PAIRED 475 · platform BGISEQ 475 · models MGISEQ-2000RS (475) · 0% of runs with a Sandpiper profile · first public 2025-01-02

Authors (0)

No author record.

Help complete this project

3 of the 4 core fields are below 50% coverage: age_category, country, health_condition. Share metadata

Downloads

PRJNA1058700.csv.gz (11.4 KB) · parquet (84.7 KB) — all 475 samples, every field with route and confidence · PRJNA1058700_determinations.csv.gz (12.3 KB) — 1,425 evidence rows

Samples (475 · every field this project has values for · hover a cell for its source)

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