Infant and child gut microbiome cohort in Denmark
Longitudinal cohort study of 932 gut microbiome samples from infants and children in Denmark, sampled at 1 month and 10 years of age. machine-written summary
932 samples · 932 runs · DK · Infant / toddler · 2026 · 8.39 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 3,728 sample values (age, collection date, country, timepoint) |
| ○ Abstract / description | read; no usable statement |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
longitudinal — not resolved
Schedule stated by the source: “stool at 1 month and 10 years of age (separate 1-year timepoint deposited elsewhere)” (time origin: birth).
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 932 | 100% | ||||
| country | 932 | 100% | 932 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| age_at_collection_days | 932 | 100% | 932 | |||
| collection_date | 932 | 100% | 932 | |||
| timepoint_label | 932 | 100% | 932 |
Archive description
1year data can be found at SRA under: PRJNA715601
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of infant / toddler by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage verdict include”
- body site study.title · “Investigating infant gut microbial composition (1”
- body site external_curation.infant_catalog · “infant triage verdict include (gut/stool scope)”
- life stage external_curation.infant_catalog · “infant triage verdict include (0-3 y scope)”
- life stage study.title · “Investigating infant gut microbial composition”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA122511623 | age_at_collection_days | 30 | R1 | 0.90 | biosample_attr | 1 |
| SAMEA122512140 | age_at_collection_days | 3652 | R1 | 0.80 | sample.attr.host_age | 120 |
| SAMEA122511623 | collection_date | 2010-01-01 | R1 | 0.85 | biosample.attribute:collection_date | 2010-01-01 |
| SAMEA122511623 | country | DK | R1 | 0.90 | biosample_attr | Denmark |
| SAMEA122511623 | timepoint_label | 1 month | R1 | 0.85 | biosample.attribute:host_age | 1 |
Sequencing
932 runs over 932 samples · mean 9.49 Gbp per run (median 8.39 Gbp, total 8,840.39 Gbp; 932 runs with a base count) · layout PAIRED 932 · platform ILLUMINA 932 · models Illumina NovaSeq 6000 (932) · 0% of runs with a Sandpiper profile · first public 2026-05-13 – 2026-05-15
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: health_condition, subject_id. Share metadata
Downloads
PRJEB112735.csv.gz (24.1 KB) · parquet (108.5 KB) — all 932 samples, every field with route and confidence · PRJEB112735_determinations.csv.gz (18.0 KB) — 3,728 evidence rows