Gut Metagenomics in HCC vs CRLM Patients, China
Shotgun metagenomic study of 57 catalogued stool samples from Chinese patients with hepatocellular carcinoma (n=52) and colorectal liver metastases (n=5), part of a larger HCC cohort study. machine-written summary
57 samples · 57 runs · CN · Age unknown · 2026 · 13.59 Gbp / sample · cohort Two stable gut microbiome guilds predict liver tum
One study deposited as 2 BioProjects (254 catalog samples together): PRJNA1372070 · PRJNA1372073 · show together
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 171 sample values (collection date, country, location locality) |
| ✓ Abstract / description | 57 sample values (location region) |
| ✓ Full text | 57 sample values (location site) · PMC13147943 |
| ✓ Supplementary tables | 114 sample values (health condition, health condition detail) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 57 | 100% | 57 | |||
| health_condition | 57 | 100% | 57 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 57 | 100% | 57 | |||
| detailed_location | 57 | 100% | ||||
| health_condition_detail | 57 | 100% | 57 | |||
| location_locality | 57 | 100% | 57 | |||
| location_region | 57 | 100% | 57 | |||
| location_site | 57 | 100% | 57 |
- Two stable gut microbiome guilds predict liver tumor class and treatment responses. 2026 PMID 42099457 PMC13147943 own_data
Archive description
Hepatocellular Carcinoma Cohort from No.2 Hospital of Ningbo, China.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by curator_audit with confidence 0.45. Assay shotgun_dna.
- host runs.scientific_name · “human gut metagenome”
- host runs.isolation_source · “feces”
- body site runs.scientific_name · “human gut metagenome”
- body site runs.isolation_source · “feces”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN53528796 | collection_date | 2024-11-07 | R1 | 0.85 | biosample.attribute:collection_date | 2024-11-07 |
| SAMN53528796 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China: Ningbo |
| SAMN53528796 | health_condition | liver_disease | R2 | 0.85 | paper.supp.IMT2-5-e70123-s001.xlsx[S8!HCC/CRLM] | HF38 HCC |
| SAMN53528796 | health_condition_detail | hepatocellular carcinoma (HCC) | R2 | 0.85 | paper.supp.IMT2-5-e70123-s001.xlsx[S8!HCC/CRLM] | HF38 HCC |
| SAMN53528796 | location_locality | Ningbo | R1 | 0.85 | biosample.attribute:geo_loc_name | China: Ningbo |
| SAMN53528796 | location_region | Zhejiang | R4 | 0.45 | ena.study_description | No.2 Hospital of Ningbo, China |
| SAMN53528796 | location_site | Ningbo No.2 Hospital | R3 | 0.70 | paper.body.methods | diagnosed and treated at Ningbo No. 2 Hospital |
Sequencing
57 runs over 57 samples · mean 13.70 Gbp per run (median 13.59 Gbp, total 780.95 Gbp; 57 runs with a base count) · layout PAIRED 57 · platform HELICOS 57 · models Helicos HeliScope (57) · 0% of runs with a Sandpiper profile · first public 2026-03-22
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, subject_id. Share metadata
Downloads
PRJNA1372073.csv.gz (2.5 KB) · parquet (72.0 KB) — all 57 samples, every field with route and confidence · PRJNA1372073_determinations.csv.gz (3.6 KB) — 399 evidence rows