Gut mycobiome in obese vs lean adults, Hong Kong
Shotgun metagenomics of stool DNA from 229 catalog samples (128 obese) of a case-control study comparing the gut mycobiome of obese and lean adults in Hong Kong. machine-written summary
229 samples · 229 runs · HK · Age unknown · 2022 · 13.18 Gbp / sample · cohort Variation in the metagenomic analysis of fecal mic
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 485 sample values (country, health condition, health condition detail) |
| ○ Abstract / description | read; no usable statement |
| ○ Full text | read; no usable statement or table · PMC11195487, PMC11602751, PMC11619352 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 229 | 100% | 229 | |||
| health_condition | 128 | 56% | 128 | |||
| subject_id | 0 | 0% | ||||
| health_condition_detail | 128 | 56% | 128 |
- The gut microbiota-derived metabolite indole-3-propionic acid enhances leptin sensitivity by targeting STAT3 against diet-induced obesity. 2024 PMID 39606796 PMC11602751 cites_accession
- Gut mycobiome alterations in obesity in geographically different regions. 2024 PMID 38899956 PMC11195487 own_data
- Variation in the metagenomic analysis of fecal microbiome composition calls for a standardized operating approach. 2024 PMID 39475247 PMC11619352 own_data
Archive description
human gut metagenomics Metagenome
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by curator_audit with confidence 0.55. Assay shotgun_dna.
- host runs.isolation_source · “human feces”
- host runs.scientific_name · “human gut metagenome”
- body site runs.isolation_source · “human feces”
- body site runs.scientific_name · “human gut metagenome”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN26880167 | country | HK | R1 | 0.90 | sample.attr.geo_loc_name | Hong Kong |
| SAMN26880201 | health_condition | obesity | R1 | 0.85 | biosample.attribute:group | group: S35Obese |
| SAMN26880201 | health_condition_detail | obese (BMI >= 28 kg/m2) | R1 | 0.85 | biosample.attribute:group | group: S35Obese |
Sequencing
229 runs over 229 samples · mean 13.39 Gbp per run (median 13.18 Gbp, total 3,066.96 Gbp; 229 runs with a base count) · layout PAIRED 229 · platform ILLUMINA 229 · models Illumina NovaSeq 6000 (229) · 93% of runs with a Sandpiper profile · first public 2022-04-04
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, subject_id. Share metadata
Downloads
PRJNA648796.csv.gz (6.1 KB) · parquet (77.1 KB) — all 229 samples, every field with route and confidence · PRJNA648796_determinations.csv.gz (4.1 KB) — 485 evidence rows