Rye vs wheat degradation by gut microbiota (Germany)
An in vitro multi-omics study using 60 samples from Germany comparing degradation of rye and wheat by human gut microbiota; no further population or design details are given. machine-written summary
60 samples · 60 runs · DE · Age unknown · 2025 · 7.31 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 120 sample values (collection date, country) |
| ○ Abstract / description | read; no usable statement |
| ○ Full text | read; no usable statement or table · PMC12811496 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 58 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 60 | 100% | 60 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 60 | 100% | 60 |
- Uncovering differences in rye and wheat degradation by human gut microbiota applying a quantitative multi-metaOmics <i>in vitro</i> approach. 2026 PMID 41551588 PMC12811496 own_data
- Uncovering differences in rye and wheat degradation by human gut microbiota applying a quantitative multi-metaOmics in vitro approach 2025 own_data
Archive description
Uncovering differences in rye and wheat degradation by human gut microbiota applying a quantitative multi-metaOmics in vitro approach
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.55. Assay shotgun_dna.
- host study.description · “human gut microbiota applying a quantitative”
- body site study.description · “rye and wheat degradation by human gut microbiota”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA118766712 | collection_date | 2023 | R1 | 0.90 | biosample.attribute:collection_date | 2023 |
| SAMEA118766712 | country | DE | R1 | 0.90 | sample.attr.geographic_location_country_and_or_sea | Germany |
Sequencing
60 runs over 60 samples · mean 7.11 Gbp per run (median 7.31 Gbp, total 426.81 Gbp; 60 runs with a base count) · layout PAIRED 60 · platform ILLUMINA 60 · models Illumina NovaSeq 6000 (60) · 97% of runs with a Sandpiper profile · first public 2025-07-20
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, health_condition, subject_id. Share metadata
Downloads
PRJEB93866.csv.gz (2.2 KB) · parquet (70.4 KB) — all 60 samples, every field with route and confidence · PRJEB93866_determinations.csv.gz (907 B) — 120 evidence rows