Infant gut metagenome, three months, Cork, Ireland
89 gut metagenome samples from three-month-old infants in Cork, Ireland. No condition, intervention, or study design is specified in the available sources. machine-written summary
89 samples · 89 runs · IE · Infant / toddler · 2024 · 2.71 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 267 sample values (country, subject id, timepoint) |
| ○ Abstract / description | read; no usable statement |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 77 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 89 | 100% | 89 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 89 | 100% | 89 | |||
| timepoint_label | 89 | 100% | 89 |
Archive description
MicrobeMon threemonth infant
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of infant / toddler by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage verdict include”
- body site external_curation.infant_catalog · “infant triage verdict include (gut/stool scope)”
- life stage external_curation.infant_catalog · “infant triage verdict include (0-3 y scope)”
- life stage study.title · “MicrobeMon threemonth infant”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN44970409 | country | IE | R1 | 0.90 | biosample_attr | Ireland:Cork |
| SAMN44970409 | subject_id | microbeMom3M-PC083 | R1 | 0.50 | biosample_attr | microbeMom3M-PC083 |
| SAMN44970409 | timepoint_label | 3M | R1 | 0.70 | sample.name_rule:title | microbeMom3M-PC083 |
Sequencing
89 runs over 89 samples · mean 2.58 Gbp per run (median 2.71 Gbp, total 229.78 Gbp; 89 runs with a base count) · layout PAIRED 89 · platform ILLUMINA 89 · models Illumina HiSeq 1000 (89) · 87% of runs with a Sandpiper profile · first public 2024-11-29
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, health_condition. Share metadata
Downloads
PRJNA1189459.csv.gz (3.4 KB) · parquet (73.5 KB) — all 89 samples, every field with route and confidence · PRJNA1189459_determinations.csv.gz (2.5 KB) — 267 evidence rows