Gut metagenome in chikungunya case-control study, Guangdong
107 fecal samples from healthy individuals and chikungunya patients in Guangdong Province, China, analyzed using a case-control design. machine-written summary
107 samples · 107 runs · CN · Age unknown · 2026 · 6.81 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 642 sample values (collection date, country, latitude, location region, longitude, subject id) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 107 | 100% | 107 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 107 | 100% | 107 | |||
| collection_date | 107 | 100% | 107 | |||
| detailed_location | 107 | 100% | ||||
| latitude | 107 | 100% | 107 | |||
| location_region | 107 | 100% | 107 | |||
| longitude | 107 | 100% | 107 |
Archive description
Fecal samples collected from healthy individuals and patients with chikungunya in Guangdong Province, China.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.68. Assay shotgun_dna.
- host study.title · “gut metagenome”
- body site study.title · “gut metagenome”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN56522802 | collection_date | 2025 | R1 | 0.90 | biosample.attribute:collection_date | 2025 |
| SAMN56522802 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China: Guangdong |
| SAMN56522802 | latitude | 23.2100 | R1 | 0.90 | biosample.attribute:lat_lon | 23.21 N 113.27 E |
| SAMN56522802 | location_region | Guangdong | R1 | 0.85 | biosample.attribute:geo_loc_name | China: Guangdong |
| SAMN56522802 | longitude | 113.2700 | R1 | 0.90 | biosample.attribute:lat_lon | 23.21 N 113.27 E |
| SAMN56522802 | subject_id | participant_001 | R1 | 0.85 | biosample.attribute:isolation_source | stool from participant_001 |
Sequencing
107 runs over 107 samples · mean 6.85 Gbp per run (median 6.81 Gbp, total 732.91 Gbp; 107 runs with a base count) · layout PAIRED 107 · platform ILLUMINA 107 · models Illumina NovaSeq X Plus (107) · 0% of runs with a Sandpiper profile · first public 2026-04-02
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, health_condition. Share metadata
Downloads
PRJNA1437835.csv.gz (3.6 KB) · parquet (74.3 KB) — all 107 samples, every field with route and confidence · PRJNA1437835_determinations.csv.gz (4.9 KB) — 642 evidence rows