Gut metagenome from hospitalized patients in Beijing, China
52 fecal samples from patients in wards in Beijing, China. No health condition, intervention, or study design details are specified in the available sources. machine-written summary
52 samples · 52 runs · CN · Age unknown · 2024 · 5.67 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 260 sample values (collection date, country, latitude, location locality, longitude) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 45 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 52 | 100% | 52 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 52 | 100% | 52 | |||
| detailed_location | 52 | 100% | ||||
| latitude | 52 | 100% | 52 | |||
| location_locality | 52 | 100% | 52 | |||
| longitude | 52 | 100% | 52 |
Archive description
Fecal samples from the patients in wards
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.72. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- host run.scientific_name · “human metagenome”
- body site study.description · “Fecal samples from the patients”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN41177486 | collection_date | 2023-02-08 | R1 | 0.90 | biosample.attribute:collection_date | 2023-02-08 |
| SAMN41177486 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:Beijing |
| SAMN41177486 | latitude | 39.5400 | R1 | 0.90 | biosample.attribute:lat_lon | 39.54 N 116.25 E |
| SAMN41177486 | location_locality | Beijing | R1 | 0.85 | biosample.attribute:geo_loc_name | China:Beijing |
| SAMN41177486 | longitude | 116.2500 | R1 | 0.90 | biosample.attribute:lat_lon | 39.54 N 116.25 E |
Sequencing
52 runs over 52 samples · mean 5.66 Gbp per run (median 5.67 Gbp, total 294.44 Gbp; 52 runs with a base count) · layout PAIRED 52 · platform ILLUMINA 52 · models Illumina NovaSeq 6000 (52) · 87% of runs with a Sandpiper profile · first public 2024-08-31
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, health_condition, subject_id. Share metadata
Downloads
PRJNA1107280.csv.gz (2.2 KB) · parquet (71.0 KB) — all 52 samples, every field with route and confidence · PRJNA1107280_determinations.csv.gz (2.1 KB) — 260 evidence rows