Neonatal Gut Colonization by Group B Streptococcus, France
100 samples from France examining neonatal gut colonization by Group B Streptococcus, focusing on the hypervirulent GBS CC17 lineage's competitive advantage; study design not stated. machine-written summary
100 samples · 370 runs · FR · Infant / toddler · 2026 · 2.86 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 492 sample values (collection date, country, delivery mode, diet, feeding mode) |
| ○ Abstract / description | read; no usable statement |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 100 | 100% | 100 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 100 | 100% | 100 | |||
| delivery_mode | 100 | 100% | 100 | |||
| diet | 96 | 96% | 96 | |||
| feeding_mode | 96 | 96% | 96 |
- Competitive advantage of hypervirulent Group B Streptococcus for neonatal colonization revealed by metagenomic analysis of gut microbiota 2026 own_data
Archive description
Metagenomic signatures of neonatal gut colonization by Group B Streptococcus reveal competitive advantage for the hypervirulent GBS CC17
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of infant / toddler and neonate by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage verdict include”
- body site study.description · “signatures of neonatal gut colonization by Group”
- body site external_curation.infant_catalog · “infant triage verdict include (gut/stool scope)”
- life stage external_curation.infant_catalog · “infant triage verdict include (0-3 y scope)”
- life stage study.description · “Metagenomic signatures of neonatal gut colonization by”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA120440370 | collection_date | 2013 | R1 | 0.85 | biosample.attribute:collection_date | collection_date: 2013 |
| SAMEA120440370 | country | FR | R1 | 0.90 | biosample_attr | France |
| SAMEA120440370 | delivery_mode | c_section | R1 | 0.90 | biosample_attr | caesarean |
| SAMEA120440370 | diet | formula | R1 | 0.85 | biosample.attribute:type_of_feeding | type_of_feeding: FF |
| SAMEA120440370 | feeding_mode | formula | R1 | 0.85 | biosample_attr | FF |
Sequencing
370 runs over 100 samples · mean 0.79 Gbp per run (median 0.72 Gbp, total 293.26 Gbp; 370 runs with a base count) · layout SINGLE 370 · platform ION_TORRENT 370 · models Ion Torrent Proton (370) · 0% of runs with a Sandpiper profile · first public 2026-03-12
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, health_condition, subject_id. Share metadata
Downloads
PRJEB101714.csv.gz (3.6 KB) · parquet (73.8 KB) — all 100 samples, every field with route and confidence · PRJEB101714_determinations.csv.gz (2.8 KB) — 492 evidence rows