Whole metagenome sequencing of Chinese human feces, multi-region
169 fecal metagenome samples from Chinese individuals across multiple regions (Xinjiang, Shaanxi, Jiangsu, Shanxi, Tianjin, Heilongjiang, Jiangxi). No health condition, intervention, or study design specified. machine-written summary
169 samples · 169 runs · CN · Age unknown · 2023 · 14.75 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 1,350 sample values (collection date, country, latitude, location locality, location region, longitude, sex, subject id) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 169 | 100% | 169 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 169 | 100% | 169 | |||
| collection_date | 169 | 100% | 169 | |||
| detailed_location | 169 | 100% | ||||
| latitude | 169 | 100% | 169 | |||
| location_locality | 169 | 100% | 169 | |||
| location_region | 169 | 100% | 169 | |||
| longitude | 169 | 100% | 169 | |||
| sex | 167 | 99% | 167 |
Archive description
Whole metagenomics sequecing raw data of Chinese human feces
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.62. Assay shotgun_dna.
- host study.title · “Chinese human feces”
- body site study.title · “Chinese human feces”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN37009392 | collection_date | 2017-04-28 | R1 | 0.90 | biosample.attribute:collection_date | 2017-04-28 |
| SAMN37009392 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China: Xinjiang, Wusu |
| SAMN37009392 | latitude | 44.4132 | R1 | 0.90 | biosample.attribute:lat_lon | 44.41323 N 84.30276 E |
| SAMN37009392 | location_locality | Wusu | R1 | 0.85 | biosample.attribute:geo_loc_name | China: Xinjiang, Wusu |
| SAMN37009392 | location_region | Xinjiang | R1 | 0.85 | biosample.attribute:geo_loc_name | China: Xinjiang, Wusu |
| SAMN37009527 | location_region | Tianjin Shi | R1 | 0.60 | biosample.attribute:lat_lon | 39.12825 N 117.2523 E |
| SAMN37009392 | longitude | 84.3028 | R1 | 0.90 | biosample.attribute:lat_lon | 44.41323 N 84.30276 E |
| SAMN37009392 | sex | male | R1 | 0.70 | sample.name_rule:description | Sample000:Male_42_Han |
| SAMN37009392 | subject_id | Sample000 | R1 | 0.70 | biosample.attribute:title | DNA virome sequecing raw data of the subject #Sample000 |
Sequencing
169 runs over 169 samples · mean 14.88 Gbp per run (median 14.75 Gbp, total 2,515.11 Gbp; 169 runs with a base count) · layout PAIRED 169 · platform DNBSEQ 169 · models DNBSEQ-T7 (169) · 0% of runs with a Sandpiper profile · first public 2023-08-20
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, health_condition. Share metadata
Downloads
PRJNA1006089.csv.gz (5.7 KB) · parquet (78.3 KB) — all 169 samples, every field with route and confidence · PRJNA1006089_determinations.csv.gz (12.0 KB) — 1,350 evidence rows