Gut Microbiota in Alzheimer's: MIND Diet Intervention, USA
384 stool samples from Rush and Harvard cohorts in the USA, collected at Year 3 of a U19 study examining MIND diet-induced effects on the microbiota-brain axis in Alzheimer's disease; intervention design. machine-written summary
384 samples · 384 runs · US · Adult · 2026 · 2.18 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 1,140 sample values (collection date, country, latitude, longitude) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
intervention — arms not resolved
design single_arm_before_after · MIND diet intervention
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 384 | 100% | ||||
| country | 328 | 85% | 328 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| latitude | 328 | 85% | 328 | |||
| longitude | 328 | 85% | 328 | |||
| collection_date | 156 | 41% | 156 |
Archive description
Stool collection for the U19 occurred at Y3 (from both the Rush and Harvard cohorts).
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- body site study.description · “Stool collection for the”
- body site external_curation.infant_catalog · “body_site_call gut”
- life stage external_curation.infant_catalog · “infant triage reason_code age_adult_only”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA122901803 | collection_date | 2020-11-19 | R1 | 0.90 | biosample.attribute:collection_date | 2020-11-19 |
| SAMEA122901803 | country | US | R1 | 0.90 | sample.attr.geographic_location_country_and_or_sea | USA |
| SAMEA122901803 | latitude | 35.9800 | R1 | 0.90 | biosample.attribute:geographic_location_latitude+geographic_location_longitude | 35.98 -78.9 |
| SAMEA122901803 | longitude | -78.9000 | R1 | 0.90 | biosample.attribute:geographic_location_latitude+geographic_location_longitude | 35.98 -78.9 |
Sequencing
384 runs over 384 samples · mean 2.05 Gbp per run (median 2.18 Gbp, total 788.65 Gbp; 384 runs with a base count) · layout PAIRED 384 · platform ILLUMINA 384 · models Illumina NovaSeq 6000 (384) · 0% of runs with a Sandpiper profile · first public 2026-06-30
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: health_condition, subject_id. Share metadata
Downloads
PRJEB115009.csv.gz (9.4 KB) · parquet (83.9 KB) — all 384 samples, every field with route and confidence · PRJEB115009_determinations.csv.gz (6.7 KB) — 1,140 evidence rows