Longitudinal infant gut E. coli isolates and metagenomes, Denmark
773 samples from Denmark, spanning infant, child, and adult age categories, collected as part of a longitudinal study of infant gut E. coli isolates at 1 week, 1 month, and 1 year of age. machine-written summary
773 samples · 773 runs · DK · Infant / toddler · 2026 · 1.36 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 5,411 sample values (age, collection date, country, latitude, location region, longitude, timepoint) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
longitudinal — not resolved
Schedule stated by the source: “infant gut samples at 1 week, 1 month, 1 year” (time origin: birth).
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 773 | 100% | ||||
| country | 773 | 100% | 773 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| age_at_collection_days | 773 | 100% | 773 | |||
| collection_date | 773 | 100% | 773 | |||
| detailed_location | 773 | 100% | ||||
| latitude | 773 | 100% | 773 | |||
| location_region | 773 | 100% | 773 | |||
| longitude | 773 | 100% | 773 | |||
| timepoint_label | 773 | 100% | 773 |
Archive description
The 1 year metagenomes can be found at SRA: PRJNA715601 1 month (and 10 years) metagenomes can be found at ENA: PRJEB112735 1 week metagenomes are in preparation.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of infant / toddler and adult and child by sonnet_x2 with confidence 0.57. Assay shotgun_dna.
- host run.scientific_name · “human gut metagenome”
- body site study.title · “infant gut e.coli isolates”
- life stage study.title · “1 week, 1 month, 1 year”
- life stage sample.attr.host_age · “52 (n=507/773)”
- life stage sample.attr.host_age · “4 (n=266/773)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA122793507 | age_at_collection_days | 1461.0 | R1 | 0.85 | sample.attr.host_age | 4 |
| SAMEA122793507 | collection_date | 2010-01-01 | R1 | 0.90 | biosample.attribute:collection_date | 2010-01-01 |
| SAMEA122793507 | country | DK | R1 | 0.90 | sample.attr.geographic_location_country_and_or_sea | Denmark |
| SAMEA122793507 | latitude | 55.6760 | R1 | 0.90 | biosample.attribute:geographic_location_latitude+geographic_location_longitude | 55.676 12.568 |
| SAMEA122793507 | location_region | Capital Region | R1 | 0.60 | biosample.attribute:geographic_location_latitude+geographic_location_longitude | 55.676 12.568 |
| SAMEA122793507 | longitude | 12.5680 | R1 | 0.90 | biosample.attribute:geographic_location_latitude+geographic_location_longitude | 55.676 12.568 |
| SAMEA122793507 | timepoint_label | month 1 | R1 | 0.85 | biosample.attribute:host_age | 4 |
Sequencing
773 runs over 773 samples · mean 1.35 Gbp per run (median 1.36 Gbp, total 1,044.03 Gbp; 773 runs with a base count) · layout PAIRED 690, SINGLE 83 · platform ILLUMINA 690, PACBIO_SMRT 83 · models Illumina NovaSeq X (690), Sequel IIe (83) · 0% of runs with a Sandpiper profile · first public 2026-06-16
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: health_condition, subject_id. Share metadata
Downloads
PRJEB112862.csv.gz (17.5 KB) · parquet (97.5 KB) — all 773 samples, every field with route and confidence · PRJEB112862_determinations.csv.gz (27.6 KB) — 5,411 evidence rows