Gut microbiome across disease groups in Latvia
240 samples from Latvia, covering healthy controls and individuals with colorectal cancer, liver disease, autoimmune/inflammatory conditions, or other cardiometabolic conditions; design type recorded as "other." machine-written summary
240 samples · 240 runs · LV · Age unknown · 2023 · 7.36 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 658 sample values (country, health condition, health condition detail) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 240 | 100% | 240 | |||
| health_condition | 209 | 87% | 209 | |||
| subject_id | 0 | 0% | ||||
| health_condition_detail | 209 | 87% | 209 |
Archive description
Will be added
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.60. Assay shotgun_dna.
- host run.scientific_name · “human gut metagenome”
- body site run.scientific_name · “human gut metagenome”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA112671170 | country | LV | R1 | 0.90 | sample.attr.geographic_location_country_and_or_sea | Latvia |
| SAMEA112671170 | health_condition | autoimmune_inflammatory | R1 | 0.85 | biosample.attribute:description | Autoimmune disease |
| SAMEA112671170 | health_condition_detail | Autoimmune disease | R1 | 0.85 | biosample.attribute:description | Autoimmune disease |
Sequencing
240 runs over 240 samples · mean 10.82 Gbp per run (median 7.36 Gbp, total 2,596.35 Gbp; 240 runs with a base count) · layout PAIRED 240 · platform DNBSEQ 240 · models DNBSEQ-G400 (240) · 0% of runs with a Sandpiper profile · first public 2023-03-20
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, subject_id. Share metadata
Downloads
PRJEB60097.csv.gz (6.2 KB) · parquet (77.9 KB) — all 240 samples, every field with route and confidence · PRJEB60097_determinations.csv.gz (4.2 KB) — 658 evidence rows