Infant gut microbiome by atopic risk, New York cohort
Longitudinal cohort study of 261 infant stool samples from New York, USA, comparing high atopic risk versus low atopic risk infants. machine-written summary
261 samples · 261 runs · US · Infant / toddler · 2026 · 7.35 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 261 sample values (country) |
| ○ Abstract / description | read; no usable statement |
| ○ Full text | read; no usable statement or table · PMC12851394 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
longitudinal — not resolved
Genera, mean relative abundance over 221 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 261 | 100% | ||||
| country | 261 | 100% | 261 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% |
- The enteric DNA virome differs in infants at risk for atopic disease. PMID 41593042 PMC12851394 curated
Archive description
Infant stools from high atopic risk versus low atopic risk infants
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of infant / toddler by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage verdict include”
- body site study.title · “Infant stool”
- body site study.description · “Infant stools from high atopic”
- life stage external_curation.infant_catalog · “infant triage verdict include (0-3 y scope)”
- life stage study.title · “Infant stool”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN49918264 | country | US | R1 | 0.90 | biosample_attr | USA: New York |
Sequencing
261 runs over 261 samples · mean 7.78 Gbp per run (median 7.35 Gbp, total 2,029.79 Gbp; 261 runs with a base count) · layout PAIRED 261 · platform ILLUMINA 261 · models NextSeq 500 (261) · 85% of runs with a Sandpiper profile · first public 2026-02-22
Authors (8)
Perdue TJ first · Newkirk CE · Beblavy R · Seppo AE · Davis EC · Sohn MB · Järvinen KM · Monaco CL last
Help complete this project
2 of the 4 core fields are below 50% coverage: health_condition, subject_id. Share metadata
Downloads
PRJNA1290379.csv.gz (7.3 KB) · parquet (79.7 KB) — all 261 samples, every field with route and confidence · PRJNA1290379_determinations.csv.gz (1.1 KB) — 261 evidence rows