Infant gut virome across different feeding patterns
51 gut virome samples from infants, examining relationship with different feeding patterns; country, age details, and study design are not specified in the available sources. machine-written summary
51 samples · 51 runs · Infant / toddler · 2025 · 0.40 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 51 sample values (collection date) |
| ✓ Abstract / description | 102 sample values (health condition, health condition detail) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 42 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 0 | 0% | ||||
| health_condition | 51 | 100% | 51 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 51 | 100% | 51 | |||
| health_condition_detail | 51 | 100% | 51 |
- Effects of Different Feeding Patterns on the Gut Virome of 6-Month-Old Infants. 2025 PMID 40202375 own_data
Archive description
Infands gut virome relation with different feeding patterns
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of infant / toddler by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage verdict include”
- body site study.title · “Infands gut virome (PRJCA031650)”
- body site study.description · “Infands gut virome relation with”
- life stage external_curation.infant_catalog · “infant triage verdict include (0-3 y scope)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMD00946731 | collection_date | 2023-11-15 | R1 | 0.85 | biosample.attribute:collection_date | 2023-11-15 |
| SAMD00946731 | health_condition | healthy_control | R4 | 0.50 | paper.abstract | we collected fecal samples from healthy infants |
| SAMD00946731 | health_condition_detail | healthy infants | R4 | 0.50 | paper.abstract | we collected fecal samples from healthy infants |
Sequencing
51 runs over 51 samples · mean 1.12 Gbp per run (median 0.40 Gbp, total 57.09 Gbp; 51 runs with a base count) · layout PAIRED 51 · platform ILLUMINA 51 · models Illumina NovaSeq 6000 (51) · 90% of runs with a Sandpiper profile · first public 2025-09-28
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, country, subject_id. Share metadata
Downloads
PRJDB33192.csv.gz (2.3 KB) · parquet (71.0 KB) — all 51 samples, every field with route and confidence · PRJDB33192_determinations.csv.gz (1.8 KB) — 153 evidence rows