Gut microbiota in tuberculosis patients, Xinjiang, China
58 gut metagenome samples from patients with tuberculosis in Xinjiang, China, studying changes in intestinal flora associated with the infection. machine-written summary
58 samples · 58 runs · CN · Age unknown · 2025 · 7.14 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 290 sample values (collection date, country, health condition, health condition detail, location region) |
| ○ Abstract / description | read; no usable statement |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 58 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 58 | 100% | 58 | |||
| health_condition | 58 | 100% | 58 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 58 | 100% | 58 | |||
| detailed_location | 58 | 100% | ||||
| health_condition_detail | 58 | 100% | 58 | |||
| location_region | 58 | 100% | 58 |
Archive description
To explore the changes of intestinal flora in patients with tuberculosis
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.60. Assay shotgun_dna.
- host study.description · “patients with tuberculosis”
- body site study.description · “changes of intestinal flora”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN30914390 | collection_date | 2021-04-03 | R1 | 0.90 | biosample.attribute:collection_date | 2021-04-03 |
| SAMN30914390 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:XinJiang |
| SAMN30914390 | health_condition | healthy_control | R1 | 0.70 | sample.name_rule:alias | HC3 |
| SAMN30914390 | health_condition_detail | HC | R1 | 0.70 | sample.name_rule:alias | HC3 |
| SAMN30914390 | location_region | Xinjiang | R1 | 0.85 | biosample.attribute:geo_loc_name | China:XinJiang |
Sequencing
58 runs over 58 samples · mean 7.07 Gbp per run (median 7.14 Gbp, total 409.84 Gbp; 58 runs with a base count) · layout PAIRED 58 · platform ILLUMINA 58 · models Illumina NovaSeq 6000 (58) · 100% of runs with a Sandpiper profile · first public 2025-07-01 – 2025-07-27
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, subject_id. Share metadata
Downloads
PRJNA881732.csv.gz (2.3 KB) · parquet (71.3 KB) — all 58 samples, every field with route and confidence · PRJNA881732_determinations.csv.gz (2.9 KB) — 290 evidence rows