Gut microbiota in children after liver transplantation
90 gut microbiome samples from children, studied in relation to liver transplantation surgery. No country, health condition details, or study design were specified in the available sources. machine-written summary
90 samples · 90 runs · DE · Child · 2025 · 1.68 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 180 sample values (collection date, country) |
| ○ Abstract / description | read; no usable statement |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
intervention — arms not resolved
Surgical procedure studied before/after (bariatric surgery design single_arm_before_after · Pediatric liver transplantation, pre/post sampling
“gut microbiota pre and post pLTx” — bioproject.description (study level; per-sample arms are in the intervention column below)
longitudinal — not resolved
Schedule stated by the source: “pre-pLT, then longitudinal follow-up until 12 months post-transplant; recovery noted at 3M” (time origin: transplant); stated follow-up 12 mo.
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 90 | 100% | ||||
| country | 90 | 100% | 90 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 90 | 100% | 90 |
- Short-term and long-term development of gut microbiota in children after liver transplantation-A prospective observational trial. 2026 PMID 40576662 own_data
Archive description
We analyzed gut microbiota pre and post pLTx based on quantitative metagenomics.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of child by sonnet_x2 with confidence 0.65. Assay shotgun_dna.
- host study.title · “development of gut microbiota in children”
- body site study.description · “analyzed gut microbiota pre and post pLTx”
- life stage study.title · “development of gut microbiota in children”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA117966139 | collection_date | 2023 | R1 | 0.85 | biosample.attribute:collection_date | collection_date: 2023 |
| SAMEA117966139 | country | DE | R1 | 0.85 | biosample.attribute:geographic_location_country_and_or_sea | geographic_location_country_and_or_sea: Germany |
Sequencing
90 runs over 90 samples · mean 1.95 Gbp per run (median 1.68 Gbp, total 175.61 Gbp; 90 runs with a base count) · layout PAIRED 90 · platform ILLUMINA 90 · models Illumina NovaSeq 6000 (90) · 0% of runs with a Sandpiper profile · first public 2025-04-02
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: health_condition, subject_id. Share metadata
Downloads
PRJEB87798.csv.gz (2.8 KB) · parquet (72.2 KB) — all 90 samples, every field with route and confidence · PRJEB87798_determinations.csv.gz (1.5 KB) — 180 evidence rows