Elderly gut microbiota, diet and stress, Örebro, Sweden
97 faecal shotgun metagenome samples from senior orienteers and home-dwelling elderly in Örebro, Sweden, studying links between gut microbiota, dietary intake, psychological stress, and gastrointestinal symptoms, in a cross-sectional design. machine-written summary
97 samples · 98 runs · SE · Elderly · 2020 · 12.18 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 582 sample values (collection date, country, latitude, location locality, location region, longitude) |
| ○ Abstract / description | read; no usable statement |
| ○ Full text | read; no usable statement or table · PMC7551621 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 93 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 97 | 100% | ||||
| country | 97 | 100% | 97 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 97 | 100% | 97 | |||
| detailed_location | 97 | 100% | ||||
| latitude | 97 | 100% | 97 | |||
| location_locality | 97 | 100% | 97 | |||
| location_region | 97 | 100% | 97 | |||
| longitude | 97 | 100% | 97 |
- Differences in Gut Microbiome Composition between Senior Orienteering Athletes and Community-Dwelling Older Adults. 2020 PMID 32867153 PMC7551621 own_data
Archive description
This project is aimed to understand the influence of diet and psychological variables on the gut microbiota of elderly cohorts. Shotgun metagenome sequences were obtained from faecal samples from senior orienteers and home-dwelling elderly, and used for microbiota profiling. These microbiota profiles were used to study the differences among the participating groups based on their dietary intake, psychological stress, and gastrointestinal symptoms rating scales.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of elderly by opus_adjudicated with confidence 0.70. Assay shotgun_dna.
- host run.scientific_name · “human gut metagenome”
- host study.description · “home-dwelling elderly”
- body site study.description · “obtained from faecal samples”
- life stage study.description · “senior orienteers and home-dwelling elderly”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN13705497 | collection_date | 2015-09 | R1 | 0.90 | biosample.attribute:collection_date | 2015-09 |
| SAMN13705497 | country | SE | R1 | 0.90 | sample.attr.geo_loc_name | Sweden: Orebro |
| SAMN13705497 | latitude | 59.2753 | R1 | 0.90 | biosample.attribute:lat_lon | 59.2753 N 15.2134 E |
| SAMN13705497 | location_locality | Örebro | R1 | 0.85 | biosample.attribute:geo_loc_name | Sweden: Orebro |
| SAMN13705497 | location_region | OErebro | R1 | 0.60 | biosample.attribute:lat_lon | 59.2753 N 15.2134 E |
| SAMN13705497 | longitude | 15.2134 | R1 | 0.90 | biosample.attribute:lat_lon | 59.2753 N 15.2134 E |
Sequencing
98 runs over 97 samples · mean 12.64 Gbp per run (median 12.13 Gbp, total 1,238.45 Gbp; 98 runs with a base count) · layout PAIRED 98 · platform ILLUMINA 98 · models Illumina HiSeq 2500 (98) · 95% of runs with a Sandpiper profile · first public 2020-02-07 – 2020-02-09
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: health_condition, subject_id. Share metadata
Downloads
PRJNA598452.csv.gz (3.2 KB) · parquet (73.4 KB) — all 97 samples, every field with route and confidence · PRJNA598452_determinations.csv.gz (3.7 KB) — 582 evidence rows