Preterm infant stool metagenomes, Newcastle, UK, longitudinal
365 stool metagenome samples from very low birth weight preterm infants at RVI Newcastle upon Tyne, UK, collected as part of a longitudinal cohort study. machine-written summary
365 samples · 365 runs · GB · Infant / toddler · 2026 · 3.87 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 365 sample values (country) |
| ✓ Abstract / description | 730 sample values (location locality, preterm status) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 365 | 100% | ||||
| country | 365 | 100% | 365 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| detailed_location | 365 | 100% | ||||
| location_locality | 365 | 100% | 365 | |||
| preterm_status | 365 | 100% | 365 |
Archive description
Additional collection of Metagenomics sequencing runs from VLBW preterm infant stool samples collected from RVI Newcastle upon Tyne, UK. (Paired with submission PRJEB49383) Data utilised in several studies.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of infant / toddler and neonate by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage verdict include”
- body site study.title · “Preterm Neonatal Stool Metagenomes+”
- body site study.description · “VLBW preterm infant stool samples collected from”
- life stage external_curation.infant_catalog · “infant triage verdict include (0-3 y scope)”
- life stage study.description · “from VLBW preterm infant stool samples collected”
- life stage study.title · “Preterm Neonatal Stool Metagenomes+”
- life stage study.description · “runs from VLBW preterm infant stool samples”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA11124101 | country | GB | R1 | 0.90 | biosample_attr | United Kingdom |
| SAMEA11124101 | location_locality | Newcastle upon Tyne | R4 | 0.45 | ena.study_description | collected from RVI Newcastle upon Tyne, UK |
| SAMEA11124101 | preterm_status | preterm | R4 | 0.50 | paper.abstract | Preterm Neonatal Stool Metagenomes |
Sequencing
365 runs over 365 samples · mean 3.99 Gbp per run (median 3.87 Gbp, total 1,457.45 Gbp; 365 runs with a base count) · layout PAIRED 365 · platform ILLUMINA 365 · models Illumina HiSeq 2000 (365) · 0% of runs with a Sandpiper profile · first public 2026-04-08 – 2026-04-23
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: health_condition, subject_id. Share metadata
Downloads
PRJEB110894.csv.gz (10.1 KB) · parquet (84.4 KB) — all 365 samples, every field with route and confidence · PRJEB110894_determinations.csv.gz (4.3 KB) — 1,095 evidence rows