Gut virome of Chinese subjects across multiple provinces
Cross-sectional study of 169 gut virome samples from Chinese subjects across sites including Jiangsu, Xinjiang, Shaanxi, Shanxi, Tianjin, Heilongjiang, and Jiangxi. No health condition or intervention is specified. machine-written summary
169 samples · 192 runs · CN · Age unknown · 2023 · 4.76 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 1,181 sample values (collection date, country, latitude, location locality, location region, longitude, sex) |
| ✓ Abstract / description | 169 sample values (subject id) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 155 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 169 | 100% | 169 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 169 | 100% | 169 | |||
| collection_date | 169 | 100% | 169 | |||
| detailed_location | 169 | 100% | ||||
| latitude | 169 | 100% | 169 | |||
| location_locality | 169 | 100% | 169 | |||
| location_region | 169 | 100% | 169 | |||
| longitude | 169 | 100% | 169 | |||
| sex | 167 | 99% | 167 |
Archive description
This project includes the gut DNA virome sequencing of 169 Chinese subjects
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.60. Assay shotgun_dna.
- host study.description · “gut DNA virome sequencing of 169 Chinese subjects”
- body site study.title · “Chinese human gut”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN36986930 | collection_date | 2017-04-28 | R1 | 0.90 | biosample.attribute:collection_date | 2017-04-28 |
| SAMN36986930 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China: Xinjiang, Wusu |
| SAMN36986930 | latitude | 44.4132 | R1 | 0.90 | biosample.attribute:lat_lon | 44.41323 N 84.30276 E |
| SAMN36986930 | location_locality | Wusu | R1 | 0.85 | biosample.attribute:geo_loc_name | China: Xinjiang, Wusu |
| SAMN36986930 | location_region | Xinjiang | R1 | 0.85 | biosample.attribute:geo_loc_name | China: Xinjiang, Wusu |
| SAMN36987065 | location_region | Tianjin Shi | R1 | 0.60 | biosample.attribute:lat_lon | 39.12825 N 117.2523 E |
| SAMN36986930 | longitude | 84.3028 | R1 | 0.90 | biosample.attribute:lat_lon | 44.41323 N 84.30276 E |
| SAMN36986930 | sex | male | R1 | 0.70 | sample.name_rule:description | Sample000:Male_42_Han |
| SAMN36986930 | subject_id | SAMN36986930 | R4 | 0.60 | design.one_sample_per_subject:description | This project includes the gut DNA virome sequencing of 169 Chinese subjects |
Sequencing
192 runs over 169 samples · mean 4.50 Gbp per run (median 4.57 Gbp, total 863.27 Gbp; 192 runs with a base count) · layout PAIRED 192 · platform ILLUMINA 192 · models Illumina NovaSeq 6000 (192) · 93% of runs with a Sandpiper profile · first public 2023-08-19 – 2023-08-21
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, health_condition. Share metadata
Downloads
PRJNA1005411.csv.gz (5.4 KB) · parquet (78.3 KB) — all 169 samples, every field with route and confidence · PRJNA1005411_determinations.csv.gz (10.8 KB) — 1,350 evidence rows