Gut microbiome in Crohn's disease, Zhejiang, China
158 gut metagenome samples from individuals with Crohn's disease in Zhejiang, China. Age categories and study design are not specified in the available sources. machine-written summary
158 samples · 158 runs · CN · Age unknown · 2026 · 12.67 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 790 sample values (collection date, country, latitude, location region, longitude) |
| ✓ Abstract / description | 316 sample values (health condition, health condition detail) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 155 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 158 | 100% | 158 | |||
| health_condition | 158 | 100% | 158 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 158 | 100% | 158 | |||
| detailed_location | 158 | 100% | ||||
| health_condition_detail | 158 | 100% | 158 | |||
| latitude | 158 | 100% | 158 | |||
| location_region | 158 | 100% | 158 | |||
| longitude | 158 | 100% | 158 |
Archive description
Crohn's Disease Microbiome Atlas
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.55. Assay shotgun_dna.
- host run.scientific_name · “gut metagenome”
- body site run.scientific_name · “gut metagenome”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN55371446 | collection_date | 2024 | R1 | 0.90 | biosample.attribute:collection_date | 2024 |
| SAMN55371446 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:Zhejiang |
| SAMN55371446 | health_condition | crohns_disease | R4 | 0.50 | study.title | Crohn's Disease Microbiome Atlas |
| SAMN55371446 | health_condition_detail | Crohn's Disease | R4 | 0.50 | study.title | Crohn's Disease Microbiome Atlas |
| SAMN55371446 | latitude | 30.8700 | R1 | 0.90 | biosample.attribute:lat_lon | 30.87 N 120.12 E |
| SAMN55371446 | location_region | Zhejiang | R1 | 0.85 | biosample.attribute:geo_loc_name | China:Zhejiang |
| SAMN55371446 | longitude | 120.1200 | R1 | 0.90 | biosample.attribute:lat_lon | 30.87 N 120.12 E |
Sequencing
158 runs over 158 samples · mean 13.94 Gbp per run (median 12.67 Gbp, total 2,203.12 Gbp; 158 runs with a base count) · layout PAIRED 158 · platform ILLUMINA 158 · models Illumina NovaSeq 6000 (158) · 98% of runs with a Sandpiper profile · first public 2026-02-22 – 2026-03-22
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, subject_id. Share metadata
Downloads
PRJNA1423906.csv.gz (4.5 KB) · parquet (75.7 KB) — all 158 samples, every field with route and confidence · PRJNA1423906_determinations.csv.gz (5.8 KB) — 1,106 evidence rows