Fecal Microbiota Transplant for C. diff, USA
127 gut samples from a US study of fecal microbiota transplant (FMT) for C. difficile, with an "other" study design; no demographic or health-condition details provided. machine-written summary
127 samples · 2,133 runs · US · Age unknown · 2014 · 9.01 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 127 sample values (country) |
| ○ Abstract / description | read; no usable statement |
| ○ Full text | read; no usable statement or table · PMC9426582 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Faecal microbiota transplantation · population gi_infection_or_diarrhoea · FMT for C. difficile infection
“C.diff FMT” — study.title (study level; per-sample arms are in the intervention column below)
FMT donor → recipient — not resolved
FMT (fecal microbiota transplant) study for C. diff; donor-recipient relationship implied by title/description.
Genera, mean relative abundance over 124 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 127 | 100% | 127 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% |
- Phage Cocktails Constrain the Growth of Enterococcus. 2022 PMID 35762793 PMC9426582 unsure
Archive description
C.diff FMT
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.75. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site run.scientific_name · “human gut metagenome”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN02675497 | country | US | R1 | 0.90 | sample.attr.geo_loc_name | USA |
Sequencing
2,133 runs over 127 samples · mean 0.63 Gbp per run (median 0.41 Gbp, total 1,352.44 Gbp; 2,133 runs with a base count) · layout PAIRED 2,133 · platform ILLUMINA 2,133 · models Illumina HiSeq 2000 (2,133) · 87% of runs with a Sandpiper profile · first public 2014-03-18 – 2014-08-11
Authors (9)
Wandro S first · Ghatbale P · Attai H · Hendrickson C · Samillano C · Suh J · Dunham SJB · Pride DT · Whiteson K last
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, health_condition, subject_id. Share metadata
Downloads
PRJNA240307.csv.gz (3.7 KB) · parquet (73.3 KB) — all 127 samples, every field with route and confidence · PRJNA240307_determinations.csv.gz (711 B) — 127 evidence rows