Pediatric gut MAG inventory from Hong Kong
136 metagenome samples from children in Hong Kong, assembled into genomes for a metagenome-assembled genome inventory; no health condition, intervention, or design details given. machine-written summary
136 samples · 136 runs · HK · Infant / toddler · 2024 · 4.92 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 136 sample values (country) |
| ○ Abstract / description | read; no usable statement |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 103 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 136 | 100% | 136 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% |
- A metagenome-assembled genome inventory for children reveals early-life gut bacteriome and virome dynamics. 2024 PMID 39591974 own_data
Archive description
A Metagenome-Assembled Genome Inventory for Children (The sequencing files may be accessed via https://www.ncbi.nlm.nih.gov/sra/?term=PRJNA1162635)
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of child and infant / toddler by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage verdict include”
- body site external_curation.infant_catalog · “infant triage verdict include (gut/stool scope)”
- life stage study.title · “Genome Inventory for Children (MAGIC)”
- life stage study.description · “Genome Inventory for Children (The sequencing files”
- life stage external_curation.infant_catalog · “infant triage verdict include (0-3 y scope)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN43792048 | country | HK | R1 | 0.90 | biosample_attr | Hong Kong |
Sequencing
136 runs over 136 samples · mean 4.71 Gbp per run (median 4.92 Gbp, total 640.70 Gbp; 136 runs with a base count) · layout PAIRED 136 · platform ILLUMINA 136 · models Illumina NovaSeq 6000 (136) · 76% of runs with a Sandpiper profile · first public 2024-12-01
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, health_condition, subject_id. Share metadata
Downloads
PRJNA1162635.csv.gz (4.2 KB) · parquet (74.4 KB) — all 136 samples, every field with route and confidence · PRJNA1162635_determinations.csv.gz (697 B) — 136 evidence rows