Gut microbiome in Taenia asiatica infection, Dali, China
190 fecal samples from a case-control study in Dali, China, comparing gut microbiota of Taenia asiatica-infected patients and healthy controls, including a longitudinal subset sampled after deworming. machine-written summary
190 samples · 190 runs · CN · Age unknown · 2024 · 11.46 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 755 sample values (collection date, country, location locality, subject id, timepoint) |
| ✓ Abstract / description | 190 sample values (health condition detail) |
| ✓ Full text | 190 sample values (antibiotic exposure) · PMC11536184 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
intervention — arms not resolved
design single_arm_before_after
longitudinal — not resolved
24 of 87 people sampled more than once (48 samples; median 2, up to 2 per person). Schedule stated by the source: “Subset of 24 infected patients resampled after deworming treatment; no specific timepoints stated” (time origin: intervention_start).
Genera, mean relative abundance over 174 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 190 | 100% | 190 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 111 | 58% | 111 | |||
| antibiotic_exposure | 190 | 100% | 190 | |||
| collection_date | 190 | 100% | 190 | |||
| detailed_location | 190 | 100% | ||||
| health_condition_detail | 190 | 100% | 190 | |||
| location_locality | 190 | 100% | 190 | |||
| timepoint_label | 74 | 39% | 74 |
- Taeniasis impacts human gut microbiome composition and function. 2024 PMID 39441994 PMC11536184 own_data
Archive description
Human fecal samples of Taeniasis asiatica infected patients and healthy controls
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.72. Assay shotgun_dna.
- host study.title · “Human fecal samples Metagenome”
- body site study.description · “Human fecal samples of Taeniasis”
- body site run.scientific_name · “gut metagenome”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN44409411 | antibiotic_exposure | no | R3 | 0.70 | paper.fulltext.methods | taken antibiotics or antifungal medications within the last 3 months were excluded |
| SAMN44409411 | collection_date | 2023-11 | R1 | 0.90 | biosample.attribute:collection_date | 2023-11 |
| SAMN44409411 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:Dali |
| SAMN44409411 | health_condition_detail | mixed_case_control: Taenia asiatica infection vs. healthy controls | R4 | 0.40 | study.description | Taeniasis asiatica infected patients and healthy controls |
| SAMN44409411 | location_locality | Dali | R1 | 0.85 | biosample.attribute:geo_loc_name | China:Dali |
| SAMN44409431 | subject_id | T1 | R1 | 0.70 | sample.name_rule:alias | T1 |
| SAMN44409468 | timepoint_label | baseline (pre-deworming) | R1 | 0.70 | sample.name_rule:alias | T43be |
Sequencing
190 runs over 190 samples · mean 11.68 Gbp per run (median 11.46 Gbp, total 2,218.76 Gbp; 190 runs with a base count) · layout PAIRED 190 · platform ILLUMINA 190 · models Illumina NovaSeq 6000 (190) · 92% of runs with a Sandpiper profile · first public 2024-10-27
Authors (13)
Mu W first · Ma P · Wang Y · Li Y · Ding Y · Zou Y · Pu L · Yan Q · Kong H · Guo X · Guo A · Li H · Wang S last
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, health_condition. Share metadata
Downloads
PRJNA1148078.csv.gz (5.5 KB) · parquet (77.2 KB) — all 190 samples, every field with route and confidence · PRJNA1148078_determinations.csv.gz (8.9 KB) — 1,135 evidence rows