Gut microbiome in ALD vs healthy controls, case-control
75 gut metagenome samples compared bacterial communities in ALD (alcohol-related liver disease) versus healthy controls, using a case-control design; location, ages, and participant numbers not reported. machine-written summary
75 samples · 75 runs · Age unknown · 2025 · 12.17 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ○ Sequence archive | records read; no usable sample values |
| ✓ Abstract / description | 75 sample values (health condition detail) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 71 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 0 | 0% | ||||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| health_condition_detail | 75 | 100% | 75 |
Archive description
the aim of this study was to compare the bacterial communities in ALD to those of healthy controls.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.53. Assay shotgun_dna.
- host run.scientific_name · “Homo sapiens”
- body site sample.attr.tissue · “fecal (n=75/75)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN45226766 | health_condition_detail | mixed_case_control: Study compares ALD (alcoholic liver disease) cases to healthy controls; two distinct groups | R4 | 0.50 | study.description | bacterial communities in ALD to those of healthy controls |
Sequencing
75 runs over 75 samples · mean 11.86 Gbp per run (median 12.17 Gbp, total 889.74 Gbp; 75 runs with a base count) · layout PAIRED 75 · platform ILLUMINA 75 · models Illumina NovaSeq 6000 (75) · 95% of runs with a Sandpiper profile · first public 2025-07-01 – 2025-07-27
Authors (0)
No author record.
Help complete this project
4 of the 4 core fields are below 50% coverage: age_category, country, health_condition, subject_id. Share metadata
Downloads
PRJNA1195696.csv.gz (2.6 KB) · parquet (71.9 KB) — all 75 samples, every field with route and confidence · PRJNA1195696_determinations.csv.gz (879 B) — 75 evidence rows