Healthy Indian gut metagenome, cross-sectional, multi-site
84 gut metagenome samples from healthy Indian individuals across Bhopal, Sheikhpura, Satara, Delhi, and Chittorgarh, part of a cross-sectional study on Prevotella composition in the gut microbiome. machine-written summary
84 samples · 84 runs · IN · Age unknown · 2025 · 1.69 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 504 sample values (collection date, country, latitude, location locality, location region, longitude) |
| ✓ Abstract / description | 168 sample values (health condition, health condition detail) |
| ○ Full text | read; no usable statement or table · PMC8497558 |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 77 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 84 | 100% | 84 | |||
| health_condition | 84 | 100% | 84 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 84 | 100% | 84 | |||
| detailed_location | 84 | 100% | ||||
| health_condition_detail | 84 | 100% | 84 | |||
| latitude | 84 | 100% | 84 | |||
| location_locality | 84 | 100% | 84 | |||
| location_region | 84 | 100% | 84 | |||
| longitude | 84 | 100% | 84 |
- Western and non-western gut microbiomes reveal new roles of Prevotella in carbohydrate metabolism and mouth-gut axis. 2021 PMID 34620880 PMC8497558 unsure
Archive description
Metagenomic data of Indian gut microbiome to capture taxonomic and functional composition of diverse Indian cohorts
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by opus_adjudicated with confidence 0.75. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site study.title · “Healthy Indian gut metagenome sequence data”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN18387060 | collection_date | 2018-11-17 | R1 | 0.90 | biosample.attribute:collection_date | 2018-11-17 |
| SAMN18387060 | country | IN | R1 | 0.90 | sample.attr.geo_loc_name | India: Sheikhpura |
| SAMN18387060 | health_condition | healthy_control | R4 | 0.50 | paper.abstract | 586 healthy samples from western |
| SAMN18387060 | health_condition_detail | healthy Indian cohort | R4 | 0.50 | paper.abstract | 586 healthy samples from western |
| SAMN18387060 | latitude | 25.1417 | R1 | 0.90 | biosample.attribute:lat_lon | 25.1417 N 85.8629 E |
| SAMN18387060 | location_locality | Sheikhpura | R1 | 0.85 | biosample.attribute:geo_loc_name | India: Sheikhpura |
| SAMN18387060 | location_region | Bihar | R1 | 0.60 | biosample.attribute:lat_lon | 25.1417 N 85.8629 E |
| SAMN18387060 | longitude | 85.8629 | R1 | 0.90 | biosample.attribute:lat_lon | 25.1417 N 85.8629 E |
Sequencing
84 runs over 84 samples · mean 1.75 Gbp per run (median 1.69 Gbp, total 146.59 Gbp; 84 runs with a base count) · layout PAIRED 84 · platform ILLUMINA 84 · models NextSeq 500 (84) · 92% of runs with a Sandpiper profile · first public 2025-02-08
Authors (7)
Prasoodanan P K V first · Sharma AK · Mahajan S · Dhakan DB · Maji A · Scaria J · Sharma VK last
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, subject_id. Share metadata
Downloads
PRJNA715908.csv.gz (3.1 KB) · parquet (73.8 KB) — all 84 samples, every field with route and confidence · PRJNA715908_determinations.csv.gz (4.4 KB) — 672 evidence rows