Kawasaki disease patient stool metagenome, Chengdu, China
202 stool samples from Kawasaki disease patients in Chengdu, China, profiled by shotgun metagenomic sequencing; no further design or intervention details are given. machine-written summary
202 samples · 202 runs · CN · Infant / toddler · 2024 · 10.63 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 404 sample values (collection date, country) |
| ✓ Abstract / description | 202 sample values (health condition) |
| ✓ Full text | 202 sample values (location site) · PMC11298399 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
longitudinal — not resolved
Schedule stated by the source: “Stool collected at diagnosis (before IVIG) and again at 36h after initial IVIG administration”; stated follow-up 2 d.
Genera, mean relative abundance over 182 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 202 | 100% | 202 | |||
| health_condition | 202 | 100% | 202 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 202 | 100% | 202 | |||
| detailed_location | 202 | 100% | ||||
| location_site | 202 | 100% | 202 |
- Metagenomic analysis demonstrates distinct changes in the gut microbiome of Kawasaki diseases children. 2024 PMID 39104524 PMC11298399 own_data
Archive description
normal DNA-seq of the stool of Kawasaki diseases patients
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of infant / toddler by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage verdict include”
- body site study.description · “DNA-seq of the stool of Kawasaki diseases”
- body site external_curation.infant_catalog · “infant triage verdict include (gut/stool scope)”
- life stage external_curation.infant_catalog · “infant triage verdict include (0-3 y scope)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN41445359 | collection_date | 2023-01-10 | R1 | 0.85 | biosample.attribute:collection_date | 2023-01-10 |
| SAMN41445359 | country | CN | R1 | 0.90 | biosample_attr | China:Chengdu |
| SAMN41445359 | health_condition | other_disease | R4 | 0.40 | study.title | Kawasaki diseases patients metagenome |
| SAMN41445359 | location_site | West China Second University Hospital of Sichuan University | R3 | 0.70 | paper.fulltext.methods_results | The participants involved in this research had been enrolled from the West China Second University Hospital of Sichuan University from August 2022 to June 2023. |
Sequencing
202 runs over 202 samples · mean 10.89 Gbp per run (median 10.63 Gbp, total 2,199.01 Gbp; 202 runs with a base count) · layout PAIRED 202 · platform ILLUMINA 202 · models Illumina NovaSeq 6000 (202) · 90% of runs with a Sandpiper profile · first public 2024-05-26
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, subject_id. Share metadata
Downloads
PRJNA1112983.csv.gz (6.4 KB) · parquet (78.9 KB) — all 202 samples, every field with route and confidence · PRJNA1112983_determinations.csv.gz (5.4 KB) — 808 evidence rows