Gut microbiota and SARS-CoV-2 antibodies, Hefei, China
Cross-sectional study of 172 samples from Hefei, China, exploring how body features and gut microbiota relate to SARS-CoV-2 antibody production. machine-written summary
172 samples · 172 runs · CN · Age unknown · 2025 · 7.20 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 860 sample values (collection date, country, latitude, location locality, longitude) |
| ○ Abstract / description | read; no usable statement |
| ✓ Full text | 344 sample values (health condition, health condition detail) · PMC10511961 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 171 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 172 | 100% | 172 | |||
| health_condition | 172 | 100% | 172 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 172 | 100% | 172 | |||
| detailed_location | 172 | 100% | ||||
| health_condition_detail | 172 | 100% | 172 | |||
| latitude | 172 | 100% | 172 | |||
| location_locality | 172 | 100% | 172 | |||
| longitude | 172 | 100% | 172 |
- Dynamic changes in host immune system and gut microbiota are associated with the production of SARS-CoV-2 antibodies. 2023 PMID 36207022 PMC10511961 own_data
Archive description
Explore the contributions of body feature and gut microbiota on SARS-CoV-2 antibodies production
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.70. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site run.scientific_name · “human gut metagenome”
- body site study.title · “Gut microbiota and SARS-CoV-2”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN23287425 | collection_date | 2021-06 | R1 | 0.90 | biosample.attribute:collection_date | 2021-06 |
| SAMN23287425 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:Hefei |
| SAMN23287425 | health_condition | healthy_control | R3 | 0.70 | paper.body.methods_results | MH, WJ and SH recruited the healthy volunteers from School of Life Sciences, Anhui Medical University |
| SAMN23287425 | health_condition_detail | healthy volunteers | R3 | 0.70 | paper.body.methods_results | MH, WJ and SH recruited the healthy volunteers from School of Life Sciences, Anhui Medical University |
| SAMN23287425 | latitude | 31.0000 | R1 | 0.90 | biosample.attribute:lat_lon | 31 N 117 E |
| SAMN23287425 | location_locality | Hefei | R1 | 0.85 | biosample.attribute:geo_loc_name | China:Hefei |
| SAMN23287425 | longitude | 117.0000 | R1 | 0.90 | biosample.attribute:lat_lon | 31 N 117 E |
Sequencing
172 runs over 172 samples · mean 7.43 Gbp per run (median 7.20 Gbp, total 1,277.11 Gbp; 172 runs with a base count) · layout PAIRED 172 · platform ILLUMINA 172 · models HiSeq X Ten (172) · 99% of runs with a Sandpiper profile · first public 2025-12-21
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, subject_id. Share metadata
Downloads
PRJNA778267.csv.gz (4.6 KB) · parquet (76.1 KB) — all 172 samples, every field with route and confidence · PRJNA778267_determinations.csv.gz (6.7 KB) — 1,204 evidence rows