Gut microbiota in short bowel syndrome, Shanghai, China
60 gut microbiome samples from Shanghai, China, studying the association between gut microbiota and short bowel syndrome; no further study design details are given. machine-written summary
60 samples · 60 runs · CN · Age unknown · 2026 · 11.02 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 180 sample values (collection date, country, location locality) |
| ○ Abstract / description | read; no usable statement |
| ✓ Full text | 120 sample values (location region, subject id) · PMC13595922 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 60 | 100% | 60 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 60 | 100% | 60 | |||
| collection_date | 60 | 100% | 60 | |||
| detailed_location | 60 | 100% | ||||
| location_locality | 60 | 100% | 60 | |||
| location_region | 60 | 100% | 60 |
- Multi-kingdom gut microbiota analyses identify biomarkers of different types of pediatric short bowel syndrome. 2026 PMID 42678156 PMC13595922 own_data
Archive description
The association between gut microbiota and short bowel syndrome
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.78. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site study.title · “Short bowel syndrome and gut microbiota”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN52909161 | collection_date | 2024-07-08 | R1 | 0.90 | biosample.attribute:collection_date | 2024-07-08 |
| SAMN52909161 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China: Shanghai |
| SAMN52909161 | location_locality | Shanghai | R1 | 0.85 | biosample.attribute:geo_loc_name | China: Shanghai |
| SAMN52909161 | location_region | Shanghai | R3 | 0.70 | paper.body.methods_results | Xinhua Hospital Affiliated to Shanghai Jiao Tong University School of Medicine |
| SAMN52909161 | subject_id | SAMN52909161 | R3 | 0.75 | design.one_sample_per_subject:fulltext | A cross-sectional study was conducted. |
Sequencing
60 runs over 60 samples · mean 11.24 Gbp per run (median 11.02 Gbp, total 674.20 Gbp; 60 runs with a base count) · layout PAIRED 60 · platform ILLUMINA 60 · models Illumina NovaSeq 6000 (60) · 0% of runs with a Sandpiper profile · first public 2026-08-14
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, health_condition. Share metadata
Downloads
PRJNA1348713.csv.gz (2.5 KB) · parquet (72.0 KB) — all 60 samples, every field with route and confidence · PRJNA1348713_determinations.csv.gz (3.0 KB) — 300 evidence rows