Healthy-control stool samples from TB-DAR cohort
239 stool samples from healthy controls enrolled in the TB-DAR cohort (tuberculosis cases and household contacts) at Temeke District Hospital, Dar es Salaam, Tanzania, in a cross-sectional design. machine-written summary
239 samples · 239 runs · TZ · Age unknown · 2025 · 6.23 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 1,434 sample values (collection date, country, latitude, location locality, location region, longitude) |
| ✓ Abstract / description | 478 sample values (health condition, location site) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 229 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 239 | 100% | 239 | |||
| health_condition | 239 | 100% | 239 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 239 | 100% | 239 | |||
| detailed_location | 239 | 100% | ||||
| latitude | 239 | 100% | 239 | |||
| location_locality | 239 | 100% | 239 | |||
| location_region | 239 | 100% | 239 | |||
| location_site | 239 | 100% | 239 | |||
| longitude | 239 | 100% | 239 |
Archive description
For this study, we included stool samples from healthy controls obtained from participants enrolled in the existing TB-DAR cohort, a prospective cohort of tuberculosis (TB) cases and their household contacts recruited between November 2013 and November 2015 at Temeke District Hospital in Dar es Salaam, Tanzania.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.75. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site study.description · “stool samples from healthy controls”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN53666054 | collection_date | 2014-01-01 | R1 | 0.90 | biosample.attribute:collection_date | 2014-01-01 |
| SAMN53666054 | country | TZ | R1 | 0.90 | sample.attr.geo_loc_name | Tanzania: Dar es Salaam |
| SAMN53666054 | health_condition | healthy_control | R4 | 0.50 | study.description | healthy controls |
| SAMN53666054 | latitude | -6.7500 | R1 | 0.90 | biosample.attribute:lat_lon | 6.75 S 39.25 E |
| SAMN53666054 | location_locality | Dar es Salaam | R1 | 0.85 | biosample.attribute:geo_loc_name | Tanzania: Dar es Salaam |
| SAMN53666054 | location_region | Dar es Salaam | R1 | 0.60 | biosample.attribute:lat_lon | 6.75 S 39.25 E |
| SAMN53666054 | location_site | Temeke District Hospital | R4 | 0.45 | ena.study_description | recruited between November 2013 and November 2015 at Temeke District Hospital |
| SAMN53666054 | longitude | 39.2500 | R1 | 0.90 | biosample.attribute:lat_lon | 6.75 S 39.25 E |
Sequencing
239 runs over 239 samples · mean 8.04 Gbp per run (median 6.23 Gbp, total 1,920.53 Gbp; 239 runs with a base count) · layout PAIRED 239 · platform ILLUMINA 239 · models Illumina NovaSeq 6000 (239) · 96% of runs with a Sandpiper profile · first public 2025-12-06 – 2025-12-21
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, subject_id. Share metadata
Downloads
PRJNA1374062.csv.gz (6.6 KB) · parquet (78.9 KB) — all 239 samples, every field with route and confidence · PRJNA1374062_determinations.csv.gz (10.6 KB) — 1,912 evidence rows