Antibiotic resistome in cat and human feces, China
Shotgun metagenomic study of 95 samples (30 human feces, 30 cat feces, 35 household environment swabs) from cat owners, non-owners, and cats in China, comparing antibiotic resistance gene profiles. machine-written summary
95 samples · 95 runs · CN · Age unknown · 2023 · 6.97 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 380 sample values (country, latitude, location locality, longitude) |
| ○ Abstract / description | read; no usable statement |
| ✓ Full text | 60 sample values (collection date, subject id) · PMC10591416 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 95 | 100% | 95 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 30 | 32% | 30 | |||
| detailed_location | 95 | 100% | ||||
| latitude | 95 | 100% | 95 | |||
| location_locality | 95 | 100% | 95 | |||
| longitude | 95 | 100% | 95 | |||
| collection_date | 30 | 32% | 30 |
- Genome-resolved and culture-based atlas of the feline gut microbiome enables host-adapted probiotic development. 2026 PMID 42259841 PMC13586241 cites_accession
- Pet cats may shape the antibiotic resistome of their owner's gut and living environment. 2023 PMID 37872584 PMC10591416 own_data
Archive description
We compared the ARG profiles of cats, humans, and their living environments using metagenomic analysis to identify the core ARGs in the cat and human gut and explore the potential impact of cats on ARGs in the human gut through the environment.
How this project entered the registry
Classified as human and non-human (mixed) gut / stool / other human site / multiple sites shotgun DNA metagenome of age unknown by curator_audit with confidence 0.65. Assay shotgun_dna.
- host runs.isolation_source · “CatFaeces (30); HumanFeces (30)”
- host papers[1].abstract · “core ARGs in the cat and human gut”
- body site runs.isolation_source · “CatFaeces (30); HumanFeces (30)”
- body site papers[1].abstract · “core ARGs in the cat and human gut”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN33877401 | collection_date | 2020-08 | R3 | 0.70 | paper.body.methods | 30 volunteers from Guangzhou, China, in August 2020 |
| SAMN33877371 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:Guangzhou |
| SAMN33877371 | latitude | 23.16 | R1 | 0.85 | biosample.attribute:lat_lon | 23.16 N 113.35 E |
| SAMN33877371 | location_locality | Guangzhou | R1 | 0.85 | biosample.attribute:geo_loc_name | China:Guangzhou |
| SAMN33877371 | longitude | 113.35 | R1 | 0.85 | biosample.attribute:lat_lon | 23.16 N 113.35 E |
| SAMN33877401 | subject_id | SAMN33877401 | R3 | 0.70 | design.one_sample_per_subject:fulltext | 60 fecal samples were collected from 30 pet cats and 30 volunteers from Guangzhou, China |
Sequencing
95 runs over 95 samples · mean 8.32 Gbp per run (median 6.97 Gbp, total 790.56 Gbp; 95 runs with a base count) · layout PAIRED 95 · platform ILLUMINA 95 · models Illumina NovaSeq 6000 (95) · 87% of runs with a Sandpiper profile · first public 2023-03-30
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, health_condition, subject_id. Share metadata
Downloads
PRJNA944553.csv.gz (3.1 KB) · parquet (73.6 KB) — all 95 samples, every field with route and confidence · PRJNA944553_determinations.csv.gz (3.1 KB) — 440 evidence rows