Gut metagenome in drinkers vs non-drinkers, Kunming, China
73 fecal samples from patients with and without a drinking history, collected in Kunming, China; case-control design. No further demographic or health details were provided. machine-written summary
73 samples · 73 runs · CN · Age unknown · 2026 · 6.73 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 365 sample values (collection date, country, latitude, location locality, longitude) |
| ✓ Abstract / description | 73 sample values (health condition detail) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 72 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 73 | 100% | 73 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 73 | 100% | 73 | |||
| detailed_location | 73 | 100% | ||||
| health_condition_detail | 73 | 100% | 73 | |||
| latitude | 73 | 100% | 73 | |||
| location_locality | 73 | 100% | 73 | |||
| longitude | 73 | 100% | 73 |
Archive description
Collect feces of patients with and without drinking history.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.70. Assay shotgun_dna.
- host study.description · “Collect feces of patients”
- body site study.description · “Collect feces of patients”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN43402273 | collection_date | 2023-12-12 | R1 | 0.90 | biosample.attribute:collection_date | 2023-12-12 |
| SAMN43402273 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China: kunming1 |
| SAMN43402339 | country | CN | R1 | 0.85 | biosample.attribute:geo_loc_name | China: kunming67 |
| SAMN43402273 | health_condition_detail | mixed_case_control: Mixed cohort: patients with drinking history vs. without drinking history (controls) | R4 | 0.50 | study.description | patients with and without drinking history |
| SAMN43402273 | latitude | 26.0000 | R1 | 0.90 | biosample.attribute:lat_lon | 26 N 102 E |
| SAMN43402273 | location_locality | Kunming | R1 | 0.85 | biosample.attribute:geo_loc_name | China: kunming1 |
| SAMN43402273 | longitude | 102.0000 | R1 | 0.90 | biosample.attribute:lat_lon | 26 N 102 E |
Sequencing
73 runs over 73 samples · mean 6.80 Gbp per run (median 6.73 Gbp, total 496.61 Gbp; 73 runs with a base count) · layout PAIRED 73 · platform ILLUMINA 73 · models Illumina NovaSeq 6000 (73) · 99% of runs with a Sandpiper profile · first public 2026-01-20
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, health_condition, subject_id. Share metadata
Downloads
PRJNA1153735.csv.gz (2.7 KB) · parquet (72.9 KB) — all 73 samples, every field with route and confidence · PRJNA1153735_determinations.csv.gz (3.9 KB) — 438 evidence rows