Child gut microbiome cross-sectional study in South Korea
Whole metagenomic sequencing of 55 child gut microbiome samples from South Korea, using a cross-sectional design; no health condition or intervention is specified in the available sources. machine-written summary
55 samples · 55 runs · KR · Infant / toddler · 2022 · 6.84 Gbp / sample · cohort Kim 2022 South Korea
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 220 sample values (collection date, country, health condition, health condition detail) |
| ○ Abstract / description | read; no usable statement |
| ✓ Full text | 55 sample values (location site) · PMC9726757 |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 51 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 55 | 100% | 55 | |||
| health_condition | 55 | 100% | 55 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 55 | 100% | 55 | |||
| detailed_location | 55 | 100% | ||||
| health_condition_detail | 55 | 100% | 55 | |||
| location_site | 55 | 100% | 55 |
- Different maturation of gut microbiome in Korean children. PMID 36504822 PMC9726757 curated
Archive description
whole metagenomic sequencing for child gut microbiome
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of child and infant / toddler by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage verdict include”
- body site study.title · “Child gut microbiome”
- body site study.description · “sequencing for child gut microbiome”
- life stage study.title · “Child gut microbiome”
- life stage study.description · “metagenomic sequencing for child gut microbiome”
- life stage external_curation.infant_catalog · “infant triage verdict include (0-3 y scope)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA111279291 | collection_date | 2020-04-03 | R1 | 0.85 | biosample.attribute:collection_date | 2020-04-03 |
| SAMEA111279291 | country | KR | R1 | 0.90 | biosample_attr | South Korea |
| SAMEA111279291 | health_condition | healthy_control | R1 | 0.85 | biosample.attribute:title | Child gut microbiome |
| SAMEA111279291 | health_condition_detail | Child gut microbiome | R1 | 0.85 | biosample.attribute:title | Child gut microbiome |
| SAMEA111279291 | location_site | Hanyang University Hospital | R3 | 0.70 | paper.fulltext.methods | visited the Hanyang University Hospital in South Korea |
Sequencing
55 runs over 55 samples · mean 6.75 Gbp per run (median 6.84 Gbp, total 371.18 Gbp; 55 runs with a base count) · layout PAIRED 55 · platform ILLUMINA 55 · models Illumina HiSeq 4000 (55) · 93% of runs with a Sandpiper profile · first public 2022-09-18
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, subject_id. Share metadata
Downloads
PRJEB55713.csv.gz (2.4 KB) · parquet (71.7 KB) — all 55 samples, every field with route and confidence · PRJEB55713_determinations.csv.gz (2.0 KB) — 275 evidence rows