Maternal stool microbiome, 3 months postpartum, Cork, Ireland
109 stool samples from adult mothers at 3 months postpartum, collected in Cork, Ireland. No health condition, intervention, or further design details were reported. machine-written summary
109 samples · 109 runs · IE · Adult · 2024 · 2.49 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 654 sample values (collection date, country, latitude, location region, longitude, timepoint) |
| ○ Abstract / description | read; no usable statement |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 94 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 109 | 100% | ||||
| country | 109 | 100% | 109 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 109 | 100% | 109 | |||
| detailed_location | 109 | 100% | ||||
| latitude | 109 | 100% | 109 | |||
| location_region | 109 | 100% | 109 | |||
| longitude | 109 | 100% | 109 | |||
| timepoint_label | 109 | 100% | 109 |
Archive description
MicroboeMom-3m-motherstool
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by opus_adjudicated with confidence 0.70. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site study.title · “MicroboeMom-3m-motherstool”
- life stage study.title · “MicroboeMom-3m-motherstool”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN44978003 | collection_date | 2024-01-01 | R1 | 0.90 | biosample.attribute:collection_date | 2024-01-01 |
| SAMN44978003 | country | IE | R1 | 0.90 | sample.attr.geo_loc_name | Ireland:Cork |
| SAMN44978003 | latitude | 51.8900 | R1 | 0.90 | biosample.attribute:lat_lon | 51.89 N 8.47 W |
| SAMN44978003 | location_region | Cork | R1 | 0.85 | biosample.attribute:geo_loc_name | Ireland:Cork |
| SAMN44978003 | longitude | -8.4700 | R1 | 0.90 | biosample.attribute:lat_lon | 51.89 N 8.47 W |
| SAMN44978003 | timepoint_label | 3M | R1 | 0.70 | sample.name_rule:sample_title | microbeMom3M-PB001 |
Sequencing
109 runs over 109 samples · mean 2.43 Gbp per run (median 2.49 Gbp, total 265.33 Gbp; 109 runs with a base count) · layout PAIRED 109 · platform ILLUMINA 109 · models Illumina HiSeq 1000 (109) · 86% of runs with a Sandpiper profile · first public 2024-11-27
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: health_condition, subject_id. Share metadata
Downloads
PRJNA1189516.csv.gz (3.4 KB) · parquet (73.6 KB) — all 109 samples, every field with route and confidence · PRJNA1189516_determinations.csv.gz (4.4 KB) — 654 evidence rows