Natural product intervention, Zhengzhou, China
393 fecal samples from Zhengzhou, China, in an intervention study on the effect of natural products on the intestinal microbiota; specific health condition and intervention details are not given. machine-written summary
393 samples · 393 runs · CN · Age unknown · 2023 · 14.96 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 2,358 sample values (collection date, country, latitude, location locality, location region, longitude) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
intervention — arms not resolved
design single_arm_before_after
Genera, mean relative abundance over 345 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 393 | 100% | 393 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 393 | 100% | 393 | |||
| detailed_location | 393 | 100% | ||||
| latitude | 393 | 100% | 393 | |||
| location_locality | 393 | 100% | 393 | |||
| location_region | 393 | 100% | 393 | |||
| longitude | 393 | 100% | 393 |
Archive description
To investigate the impact of treatment on intestinal microbial
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.57. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site study.title · “Intestinal Microbial”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN32824400 | collection_date | 2022-03-30 | R1 | 0.90 | biosample.attribute:collection_date | 2022-03-30 |
| SAMN32824400 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China: Zhengzhou |
| SAMN32824400 | latitude | 34.8200 | R1 | 0.90 | biosample.attribute:lat_lon | 34.82 N 113.62 E |
| SAMN32824400 | location_locality | Zhengzhou | R1 | 0.85 | biosample.attribute:geo_loc_name | China: Zhengzhou |
| SAMN32824400 | location_region | Henan Sheng | R1 | 0.60 | biosample.attribute:lat_lon | 34.82 N 113.62 E |
| SAMN32824400 | longitude | 113.6200 | R1 | 0.90 | biosample.attribute:lat_lon | 34.82 N 113.62 E |
Sequencing
393 runs over 393 samples · mean 15.08 Gbp per run (median 14.96 Gbp, total 5,925.48 Gbp; 393 runs with a base count) · layout PAIRED 393 · platform ILLUMINA 393 · models Illumina HiSeq 2000 (393) · 88% of runs with a Sandpiper profile · first public 2023-01-31
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, health_condition, subject_id. Share metadata
Downloads
PRJNA926022.csv.gz (9.7 KB) · parquet (83.6 KB) — all 393 samples, every field with route and confidence · PRJNA926022_determinations.csv.gz (12.8 KB) — 2,358 evidence rows