Hi-C and VLP sequencing of SPMP gut microbiome samples
64 samples from the Singapore Platinum Metagenomes Project (SPMP) cohort (50 adult, 14 elderly), profiled with Hi-C and viral-like particle (VLP)–enriched metagenomic sequencing. machine-written summary
64 samples · 64 runs · Age unknown · 2026 · 5.76 Gbp / sample
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what each source gave
| ○ Sequence archive | records read; no usable sample values |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 64 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 64 | 100% | ||||
| country | 0 | 0% | ||||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| age_at_collection_days | 64 | 100% | ||||
| sex | 64 | 100% |
Archive description
Sequencing data generated from Hi-C and viral-like particle (VLP)–enriched metagenomes of human gut microbiome samples from the Singapore Platinum Metagenomes Project (SPMP) cohort. These data were generated from the same biological samples as those previously deposited under PRJEB49168, which include Illumina short-read and ONT long-read metagenomic sequencing data, as well as Hi-C libraries for a different subset of samples.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.60. Assay shotgun_dna.
- host study.description · “human gut microbiome samples from the Singapore Platinum Metagenomes Project”
- body site run.scientific_name · “human gut metagenome”
Sequencing
64 runs over 64 samples · mean 7.08 Gbp per run (median 5.76 Gbp, total 452.97 Gbp; 64 runs with a base count) · layout PAIRED 64 · platform ILLUMINA 64 · models Illumina NovaSeq X Plus (64) · 94% of runs with a Sandpiper profile · first public 2026-01-27
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: country, health_condition, subject_id. Share metadata
Downloads
PRJEB106095.csv.gz (2.6 KB) · parquet (71.4 KB) — all 64 samples, every field with route and confidence · PRJEB106095_determinations.csv.gz (168 B) — 0 evidence rows