Gut metagenome in chronic kidney disease (HS study)
118 gut metagenome samples studied for a link between microbial ammonia metabolism and chronic kidney disease pathogenesis; country, age, and design details are not reported. machine-written summary
118 samples · 118 runs · Age unknown · 2025 · 11.30 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 118 sample values (collection date) |
| ✓ Abstract / description | 236 sample values (health condition, health condition detail) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 115 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 0 | 0% | ||||
| health_condition | 118 | 100% | 118 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 118 | 100% | 118 | |||
| health_condition_detail | 118 | 100% | 118 |
- Segatella copri and gut microbial ammonia metabolism contribute to chronic kidney disease pathogenesis. 2025 PMID 40555791 own_data
Archive description
Metagenome samples of HS study for Gut microbial ammonia metabolism contributes to the pathogenesis of chronic kidney disease
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.70. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site run.scientific_name · “human gut metagenome”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMD01622553 | collection_date | 2023-12-01 | R1 | 0.90 | biosample.attribute:collection_date | 2023-12-01 |
| SAMD01622553 | health_condition | kidney_disease | R4 | 0.50 | study.description | chronic kidney disease |
| SAMD01622553 | health_condition_detail | Study focuses on CKD patients' gut microbiota | R4 | 0.50 | study.description | chronic kidney disease |
Sequencing
118 runs over 118 samples · mean 11.43 Gbp per run (median 11.30 Gbp, total 1,348.38 Gbp; 118 runs with a base count) · layout PAIRED 118 · platform ILLUMINA 118 · models Illumina NovaSeq 6000 (118) · 97% of runs with a Sandpiper profile · first public 2025-11-21
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, country, subject_id. Share metadata
Downloads
PRJDB36775.csv.gz (3.7 KB) · parquet (73.5 KB) — all 118 samples, every field with route and confidence · PRJDB36775_determinations.csv.gz (2.3 KB) — 354 evidence rows