Gut metagenomes from sepsis patients
132 gut metagenome samples from patients with other infection; location and design not specified in the available sources. machine-written summary
132 samples · 132 runs · Age unknown · 2025 · 7.40 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 132 sample values (collection date) |
| ✓ Abstract / description | 264 sample values (health condition, health condition detail) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 130 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 0 | 0% | ||||
| health_condition | 132 | 100% | 132 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 132 | 100% | 132 | |||
| health_condition_detail | 132 | 100% | 132 |
Archive description
This study contains gut metagenomic data for sepsis patients.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.80. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site run.scientific_name · “human gut metagenome”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMD01624514 | collection_date | 2024-08-01 | R1 | 0.90 | biosample.attribute:collection_date | 2024-08-01 |
| SAMD01624514 | health_condition | other_infection | R4 | 0.50 | study.title | Gut metagenomic data for sepsis patients |
| SAMD01624514 | health_condition_detail | sepsis | R4 | 0.50 | study.description | sepsis patients |
Sequencing
132 runs over 132 samples · mean 7.73 Gbp per run (median 7.40 Gbp, total 1,020.70 Gbp; 132 runs with a base count) · layout PAIRED 132 · platform ILLUMINA 132 · models Illumina HiSeq 2500 (132) · 99% of runs with a Sandpiper profile · first public 2025-11-21
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, country, subject_id. Share metadata
Downloads
PRJDB36916.csv.gz (3.7 KB) · parquet (73.9 KB) — all 132 samples, every field with route and confidence · PRJDB36916_determinations.csv.gz (2.2 KB) — 396 evidence rows