Gut microbiota survey of adults in Shatin, Hong Kong
Cross-sectional study of 195 stool samples from adult volunteers recruited from the public in Shatin, Hong Kong, surveying gut microbiota composition. machine-written summary
195 samples · 195 runs · HK · Adult · 2024 · 4.33 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 975 sample values (collection date, country, latitude, location locality, longitude) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 175 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 195 | 100% | ||||
| country | 195 | 100% | 195 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 195 | 100% | 195 | |||
| detailed_location | 195 | 100% | ||||
| latitude | 195 | 100% | 195 | |||
| location_locality | 195 | 100% | 195 | |||
| longitude | 195 | 100% | 195 |
Archive description
Stool samples collected from volunteers recruited from Hong Kong public
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by sonnet_x2 with confidence 0.60. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site study.description · “Stool samples collected from volunteers”
- life stage study.description · “volunteers recruited from Hong Kong public”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN23838976 | collection_date | 2019-08 | R1 | 0.90 | biosample.attribute:collection_date | 2019-08 |
| SAMN23838976 | country | HK | R1 | 0.90 | sample.attr.geo_loc_name | Hong Kong: Shatin |
| SAMN23838976 | latitude | 22.3800 | R1 | 0.90 | biosample.attribute:lat_lon | 22.38 N 114.20 E |
| SAMN23838976 | location_locality | Shatin | R1 | 0.85 | biosample.attribute:geo_loc_name | Hong Kong: Shatin |
| SAMN23838976 | longitude | 114.2000 | R1 | 0.90 | biosample.attribute:lat_lon | 22.38 N 114.20 E |
Sequencing
195 runs over 195 samples · mean 5.13 Gbp per run (median 4.33 Gbp, total 1,000.94 Gbp; 195 runs with a base count) · layout PAIRED 195 · platform ILLUMINA 195 · models Illumina NovaSeq 6000 (195) · 90% of runs with a Sandpiper profile · first public 2024-01-28
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: health_condition, subject_id. Share metadata
Downloads
PRJNA787665.csv.gz (5.4 KB) · parquet (76.7 KB) — all 195 samples, every field with route and confidence · PRJNA787665_determinations.csv.gz (5.6 KB) — 975 evidence rows